Multiple sequence alignment - TraesCS4D01G203500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G203500
chr4D
100.000
2846
0
0
1
2846
350501995
350499150
0.000000e+00
5256.0
1
TraesCS4D01G203500
chr4D
100.000
29
0
0
1986
2014
350499977
350499949
1.000000e-03
54.7
2
TraesCS4D01G203500
chr4D
100.000
29
0
0
2019
2047
350500010
350499982
1.000000e-03
54.7
3
TraesCS4D01G203500
chr4B
91.724
2888
112
43
1
2846
433646518
433643716
0.000000e+00
3892.0
4
TraesCS4D01G203500
chr4A
86.800
1250
79
27
979
2187
114588256
114589460
0.000000e+00
1315.0
5
TraesCS4D01G203500
chr4A
97.350
566
14
1
2282
2846
114589502
114590067
0.000000e+00
961.0
6
TraesCS4D01G203500
chr4A
93.636
110
7
0
1
110
114587498
114587607
6.310000e-37
165.0
7
TraesCS4D01G203500
chr4A
92.683
41
3
0
2195
2235
541360412
541360452
3.060000e-05
60.2
8
TraesCS4D01G203500
chr7D
90.000
50
5
0
2193
2242
523077294
523077245
6.580000e-07
65.8
9
TraesCS4D01G203500
chr7D
100.000
29
0
0
2193
2221
135673448
135673420
1.000000e-03
54.7
10
TraesCS4D01G203500
chr5A
93.182
44
3
0
2192
2235
444055259
444055216
6.580000e-07
65.8
11
TraesCS4D01G203500
chr6D
92.683
41
3
0
2195
2235
411210122
411210162
3.060000e-05
60.2
12
TraesCS4D01G203500
chr2A
100.000
30
0
0
2193
2222
747330496
747330467
3.960000e-04
56.5
13
TraesCS4D01G203500
chr6A
100.000
28
0
0
2195
2222
411942482
411942509
5.000000e-03
52.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G203500
chr4D
350499150
350501995
2845
True
1788.466667
5256
100.000000
1
2846
3
chr4D.!!$R1
2845
1
TraesCS4D01G203500
chr4B
433643716
433646518
2802
True
3892.000000
3892
91.724000
1
2846
1
chr4B.!!$R1
2845
2
TraesCS4D01G203500
chr4A
114587498
114590067
2569
False
813.666667
1315
92.595333
1
2846
3
chr4A.!!$F2
2845
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
855
919
0.10104
CACCTGCAACAACACCACTG
59.899
55.0
0.0
0.0
0.0
3.66
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1846
1977
0.251634
AGTTAGGGAAGCAGCTCAGC
59.748
55.0
0.0
0.0
0.0
4.26
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
115
116
4.142600
GGTGTAGCTTTTGTGGCTAGAATG
60.143
45.833
0.00
0.00
42.03
2.67
124
125
2.308570
TGTGGCTAGAATGTTCCATGGT
59.691
45.455
12.58
0.00
0.00
3.55
189
190
6.302535
TGAAAGATGGCAATGATTTGGAAT
57.697
33.333
0.00
0.00
33.22
3.01
190
191
6.110033
TGAAAGATGGCAATGATTTGGAATG
58.890
36.000
0.00
0.00
33.22
2.67
364
366
1.674322
CCAGTGGATTTTCGGCGGT
60.674
57.895
1.68
0.00
0.00
5.68
435
439
4.017177
AGCCTTCCTTGTTTGGTACTAC
57.983
45.455
0.00
0.00
0.00
2.73
438
442
5.046520
AGCCTTCCTTGTTTGGTACTACTAG
60.047
44.000
0.00
0.00
0.00
2.57
439
443
5.279859
GCCTTCCTTGTTTGGTACTACTAGT
60.280
44.000
0.00
0.00
0.00
2.57
440
444
6.071165
GCCTTCCTTGTTTGGTACTACTAGTA
60.071
42.308
1.89
1.89
0.00
1.82
451
455
9.918630
TTTGGTACTACTAGTATGTTTTGACTC
57.081
33.333
2.33
0.00
32.65
3.36
454
458
7.701501
GGTACTACTAGTATGTTTTGACTCTGC
59.298
40.741
2.33
0.00
32.65
4.26
511
564
2.093021
AGAGAGCTCCATCTTCTTTGGC
60.093
50.000
10.93
0.00
34.06
4.52
532
585
1.133976
GCCTCTTGTGGGTGATGCTAT
60.134
52.381
0.00
0.00
0.00
2.97
585
638
1.071471
CAGCTTGGACGTGAACCCT
59.929
57.895
0.00
0.00
0.00
4.34
586
639
0.535102
CAGCTTGGACGTGAACCCTT
60.535
55.000
0.00
0.00
0.00
3.95
587
640
0.535102
AGCTTGGACGTGAACCCTTG
60.535
55.000
0.00
0.00
0.00
3.61
588
641
1.949257
CTTGGACGTGAACCCTTGC
59.051
57.895
0.00
0.00
0.00
4.01
589
642
0.817634
CTTGGACGTGAACCCTTGCA
60.818
55.000
0.00
0.00
0.00
4.08
590
643
0.817634
TTGGACGTGAACCCTTGCAG
60.818
55.000
0.00
0.00
0.00
4.41
591
644
1.966451
GGACGTGAACCCTTGCAGG
60.966
63.158
0.00
0.00
34.30
4.85
631
684
0.770499
TTCAACAGATCACTGCCCCA
59.230
50.000
0.00
0.00
46.95
4.96
673
726
2.109799
CGGATCAATGCCTCGCCT
59.890
61.111
0.00
0.00
0.00
5.52
690
743
2.604079
TGTTGCCCTGGCCATTGG
60.604
61.111
5.51
11.97
41.09
3.16
691
744
3.393106
GTTGCCCTGGCCATTGGG
61.393
66.667
23.22
23.22
46.00
4.12
692
745
4.718827
TTGCCCTGGCCATTGGGG
62.719
66.667
27.17
24.60
43.53
4.96
713
766
0.321564
ATGTGGTGTGTGTGATCCGG
60.322
55.000
0.00
0.00
0.00
5.14
741
794
3.771577
ACTGTTCCTCGTTTCTCCATT
57.228
42.857
0.00
0.00
0.00
3.16
743
796
4.822026
ACTGTTCCTCGTTTCTCCATTAG
58.178
43.478
0.00
0.00
0.00
1.73
754
807
9.834628
CTCGTTTCTCCATTAGTAGATTAGATC
57.165
37.037
0.00
0.00
0.00
2.75
852
916
3.205395
GCACCTGCAACAACACCA
58.795
55.556
0.00
0.00
41.59
4.17
854
918
1.666209
GCACCTGCAACAACACCACT
61.666
55.000
0.00
0.00
41.59
4.00
855
919
0.101040
CACCTGCAACAACACCACTG
59.899
55.000
0.00
0.00
0.00
3.66
856
920
1.066257
CCTGCAACAACACCACTGC
59.934
57.895
0.00
0.00
35.32
4.40
857
921
1.386525
CCTGCAACAACACCACTGCT
61.387
55.000
0.00
0.00
35.78
4.24
862
932
2.930455
GCAACAACACCACTGCTTTTGT
60.930
45.455
0.00
0.00
31.74
2.83
869
939
2.884012
CACCACTGCTTTTGTACATCCA
59.116
45.455
0.00
0.00
0.00
3.41
877
947
4.590647
TGCTTTTGTACATCCAAAATCCCA
59.409
37.500
0.00
0.00
41.88
4.37
891
961
8.650143
TCCAAAATCCCAATATAAATCTAGCC
57.350
34.615
0.00
0.00
0.00
3.93
936
1026
1.892468
CAGTCACCGCTACGAGTAAC
58.108
55.000
0.00
0.00
0.00
2.50
939
1029
1.226491
CACCGCTACGAGTAACCCG
60.226
63.158
0.00
0.00
0.00
5.28
941
1031
2.278401
CGCTACGAGTAACCCGCC
60.278
66.667
0.00
0.00
0.00
6.13
942
1032
2.768492
CGCTACGAGTAACCCGCCT
61.768
63.158
0.00
0.00
0.00
5.52
944
1034
1.436336
CTACGAGTAACCCGCCTGG
59.564
63.158
0.00
0.00
41.37
4.45
945
1035
1.001020
TACGAGTAACCCGCCTGGA
60.001
57.895
0.00
0.00
37.49
3.86
946
1036
1.033746
TACGAGTAACCCGCCTGGAG
61.034
60.000
0.00
0.00
37.49
3.86
947
1037
2.050350
CGAGTAACCCGCCTGGAGA
61.050
63.158
0.00
0.00
37.49
3.71
950
1041
1.218316
GTAACCCGCCTGGAGAGTG
59.782
63.158
0.00
0.00
37.49
3.51
955
1046
2.351244
CCGCCTGGAGAGTGTAGCA
61.351
63.158
0.00
0.00
37.49
3.49
987
1078
0.892063
GAGTTCTTGCTCTCCTCCGT
59.108
55.000
0.00
0.00
32.99
4.69
1243
1349
3.977244
CTGGTGCAACGGCCAACC
61.977
66.667
2.24
2.37
40.13
3.77
1419
1540
1.220206
CAGCCTCGTCCAGAGCAAT
59.780
57.895
0.00
0.00
45.54
3.56
1420
1541
1.088340
CAGCCTCGTCCAGAGCAATG
61.088
60.000
0.00
0.00
45.54
2.82
1421
1542
1.817099
GCCTCGTCCAGAGCAATGG
60.817
63.158
0.83
0.83
45.54
3.16
1422
1543
1.817099
CCTCGTCCAGAGCAATGGC
60.817
63.158
2.40
0.00
45.54
4.40
1423
1544
1.078918
CTCGTCCAGAGCAATGGCA
60.079
57.895
0.00
0.00
44.61
4.92
1424
1545
0.674581
CTCGTCCAGAGCAATGGCAA
60.675
55.000
0.00
0.00
44.61
4.52
1425
1546
0.955428
TCGTCCAGAGCAATGGCAAC
60.955
55.000
0.00
0.00
44.61
4.17
1426
1547
1.503542
GTCCAGAGCAATGGCAACG
59.496
57.895
0.00
0.00
44.61
4.10
1427
1548
2.180017
CCAGAGCAATGGCAACGC
59.820
61.111
0.00
3.48
44.61
4.84
1501
1631
2.685380
CGCCCCAGAACCTCCTCT
60.685
66.667
0.00
0.00
0.00
3.69
1830
1961
0.616111
ACAGCCTCCTCCAGTTCGAT
60.616
55.000
0.00
0.00
0.00
3.59
1846
1977
4.582656
AGTTCGATATTCACCTCTCCTGAG
59.417
45.833
0.00
0.00
39.92
3.35
1847
1978
2.887783
TCGATATTCACCTCTCCTGAGC
59.112
50.000
0.00
0.00
38.93
4.26
1848
1979
2.890311
CGATATTCACCTCTCCTGAGCT
59.110
50.000
0.00
0.00
38.93
4.09
1849
1980
3.305267
CGATATTCACCTCTCCTGAGCTG
60.305
52.174
0.00
0.00
38.93
4.24
1850
1981
2.244486
ATTCACCTCTCCTGAGCTGA
57.756
50.000
0.00
0.00
38.93
4.26
1870
2001
1.834263
AGCTGCTTCCCTAACTAGTGG
59.166
52.381
0.00
0.00
0.00
4.00
1877
2031
4.894114
GCTTCCCTAACTAGTGGTATCAGA
59.106
45.833
0.00
0.00
0.00
3.27
1951
2105
6.348213
CGGCCTATGCATTTTACTACCATAAC
60.348
42.308
3.54
0.00
40.13
1.89
1984
2140
6.795098
TGTAATGCAAACTAAGTACTGGTG
57.205
37.500
0.00
0.00
0.00
4.17
2057
2213
6.737254
ATGAAGAAAACTACCATAACACGG
57.263
37.500
0.00
0.00
0.00
4.94
2058
2214
4.453136
TGAAGAAAACTACCATAACACGGC
59.547
41.667
0.00
0.00
0.00
5.68
2059
2215
4.281898
AGAAAACTACCATAACACGGCT
57.718
40.909
0.00
0.00
0.00
5.52
2060
2216
5.410355
AGAAAACTACCATAACACGGCTA
57.590
39.130
0.00
0.00
0.00
3.93
2061
2217
5.985911
AGAAAACTACCATAACACGGCTAT
58.014
37.500
0.00
0.00
0.00
2.97
2062
2218
5.815740
AGAAAACTACCATAACACGGCTATG
59.184
40.000
0.00
0.00
0.00
2.23
2063
2219
3.107642
ACTACCATAACACGGCTATGC
57.892
47.619
0.00
0.00
0.00
3.14
2064
2220
2.432874
ACTACCATAACACGGCTATGCA
59.567
45.455
0.00
0.00
0.00
3.96
2065
2221
2.638480
ACCATAACACGGCTATGCAT
57.362
45.000
3.79
3.79
0.00
3.96
2066
2222
2.930950
ACCATAACACGGCTATGCATT
58.069
42.857
3.54
0.00
0.00
3.56
2099
2255
9.965824
GAAATGAAATCCTGAAAAACTGAACTA
57.034
29.630
0.00
0.00
0.00
2.24
2142
2300
2.851195
ACCACACCAAAAGCAGAGTAG
58.149
47.619
0.00
0.00
0.00
2.57
2231
2389
9.615660
ACACTCTTATATTATGGTATGAAGGGA
57.384
33.333
0.00
0.00
0.00
4.20
2805
2976
3.808728
TCAAACAAGAAGTGGAGGTCAG
58.191
45.455
0.00
0.00
0.00
3.51
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
189
190
2.373836
TGAGAAATTTCCCGGAGTTCCA
59.626
45.455
14.61
0.00
35.14
3.53
190
191
3.067684
TGAGAAATTTCCCGGAGTTCC
57.932
47.619
14.61
0.00
0.00
3.62
364
366
8.685427
CCAAAATTTCACATGTATACTCCATCA
58.315
33.333
0.00
0.00
0.00
3.07
397
401
3.227614
AGGCTAATGCATGCATGATCAA
58.772
40.909
32.79
15.11
41.91
2.57
406
410
4.178540
CAAACAAGGAAGGCTAATGCATG
58.821
43.478
0.00
0.00
41.91
4.06
409
413
2.562738
ACCAAACAAGGAAGGCTAATGC
59.437
45.455
0.00
0.00
38.76
3.56
410
414
5.010282
AGTACCAAACAAGGAAGGCTAATG
58.990
41.667
0.00
0.00
0.00
1.90
435
439
6.584942
TGTAACGCAGAGTCAAAACATACTAG
59.415
38.462
0.00
0.00
0.00
2.57
438
442
5.585500
TGTAACGCAGAGTCAAAACATAC
57.415
39.130
0.00
0.00
0.00
2.39
439
443
5.929415
TCATGTAACGCAGAGTCAAAACATA
59.071
36.000
0.00
0.00
0.00
2.29
440
444
4.754618
TCATGTAACGCAGAGTCAAAACAT
59.245
37.500
0.00
0.00
0.00
2.71
451
455
3.065786
AGGCATCATTTCATGTAACGCAG
59.934
43.478
0.00
0.00
0.00
5.18
454
458
5.401550
ACAAAGGCATCATTTCATGTAACG
58.598
37.500
0.00
0.00
0.00
3.18
493
545
1.012841
CGCCAAAGAAGATGGAGCTC
58.987
55.000
4.71
4.71
40.56
4.09
494
546
3.165606
CGCCAAAGAAGATGGAGCT
57.834
52.632
0.00
0.00
40.56
4.09
502
554
0.239347
CACAAGAGGCGCCAAAGAAG
59.761
55.000
31.54
15.33
0.00
2.85
511
564
2.401766
GCATCACCCACAAGAGGCG
61.402
63.158
0.00
0.00
31.65
5.52
532
585
1.311859
CAAGAAGCAGCAACCACAGA
58.688
50.000
0.00
0.00
0.00
3.41
631
684
4.778143
GGTGGCAGAACCGGCGAT
62.778
66.667
9.30
0.00
43.94
4.58
673
726
2.604079
CCAATGGCCAGGGCAACA
60.604
61.111
21.65
5.95
42.43
3.33
684
737
1.610086
ACACCACATGCCCCAATGG
60.610
57.895
0.00
0.00
38.26
3.16
685
738
1.186917
ACACACCACATGCCCCAATG
61.187
55.000
0.00
0.00
0.00
2.82
686
739
1.155859
ACACACCACATGCCCCAAT
59.844
52.632
0.00
0.00
0.00
3.16
687
740
1.831726
CACACACCACATGCCCCAA
60.832
57.895
0.00
0.00
0.00
4.12
690
743
0.895100
ATCACACACACCACATGCCC
60.895
55.000
0.00
0.00
0.00
5.36
691
744
0.523072
GATCACACACACCACATGCC
59.477
55.000
0.00
0.00
0.00
4.40
692
745
0.523072
GGATCACACACACCACATGC
59.477
55.000
0.00
0.00
0.00
4.06
693
746
0.798159
CGGATCACACACACCACATG
59.202
55.000
0.00
0.00
0.00
3.21
694
747
0.321564
CCGGATCACACACACCACAT
60.322
55.000
0.00
0.00
0.00
3.21
695
748
1.070615
CCGGATCACACACACCACA
59.929
57.895
0.00
0.00
0.00
4.17
696
749
2.325082
GCCGGATCACACACACCAC
61.325
63.158
5.05
0.00
0.00
4.16
697
750
2.031919
GCCGGATCACACACACCA
59.968
61.111
5.05
0.00
0.00
4.17
698
751
1.741770
GAGCCGGATCACACACACC
60.742
63.158
16.44
0.00
0.00
4.16
713
766
0.318762
ACGAGGAACAGTTGGAGAGC
59.681
55.000
0.00
0.00
0.00
4.09
741
794
4.838986
GTGCCCAAGGGATCTAATCTACTA
59.161
45.833
9.92
0.00
37.50
1.82
743
796
3.555168
CGTGCCCAAGGGATCTAATCTAC
60.555
52.174
9.92
0.00
37.50
2.59
754
807
1.524621
CAGATAGCGTGCCCAAGGG
60.525
63.158
0.00
0.00
38.57
3.95
847
911
2.884639
GGATGTACAAAAGCAGTGGTGT
59.115
45.455
0.00
0.00
0.00
4.16
850
914
4.582701
TTTGGATGTACAAAAGCAGTGG
57.417
40.909
0.00
0.00
37.40
4.00
869
939
9.432982
TGTTGGCTAGATTTATATTGGGATTTT
57.567
29.630
0.00
0.00
0.00
1.82
877
947
7.670979
TGGATGCATGTTGGCTAGATTTATATT
59.329
33.333
2.46
0.00
34.04
1.28
936
1026
3.082579
GCTACACTCTCCAGGCGGG
62.083
68.421
0.00
0.00
38.37
6.13
939
1029
1.153469
GCTGCTACACTCTCCAGGC
60.153
63.158
0.00
0.00
0.00
4.85
941
1031
0.975040
AGGGCTGCTACACTCTCCAG
60.975
60.000
0.00
0.00
0.00
3.86
942
1032
0.972983
GAGGGCTGCTACACTCTCCA
60.973
60.000
0.00
0.00
0.00
3.86
944
1034
1.681486
GGGAGGGCTGCTACACTCTC
61.681
65.000
8.43
1.22
0.00
3.20
945
1035
1.687493
GGGAGGGCTGCTACACTCT
60.687
63.158
8.43
0.00
0.00
3.24
946
1036
1.553690
TTGGGAGGGCTGCTACACTC
61.554
60.000
0.00
0.61
0.00
3.51
947
1037
1.538876
TTGGGAGGGCTGCTACACT
60.539
57.895
0.00
0.00
0.00
3.55
950
1041
1.078143
CTGTTGGGAGGGCTGCTAC
60.078
63.158
0.00
0.00
0.00
3.58
955
1046
0.474660
AGAACTCTGTTGGGAGGGCT
60.475
55.000
0.00
0.00
37.63
5.19
987
1078
3.364441
GCCATCTTGGTGCGTGCA
61.364
61.111
0.00
0.00
40.46
4.57
1027
1124
3.540014
CGTCAGAGCAAGCGCGAG
61.540
66.667
12.10
0.00
45.49
5.03
1141
1238
2.741092
CACCGGCACTACCACTGT
59.259
61.111
0.00
0.00
39.03
3.55
1226
1332
3.977244
GGTTGGCCGTTGCACCAG
61.977
66.667
0.00
0.00
40.13
4.00
1428
1549
2.726691
CTTGTAGCCGCCGTTGACG
61.727
63.158
0.00
0.00
39.44
4.35
1429
1550
0.947180
TTCTTGTAGCCGCCGTTGAC
60.947
55.000
0.00
0.00
0.00
3.18
1430
1551
0.947180
GTTCTTGTAGCCGCCGTTGA
60.947
55.000
0.00
0.00
0.00
3.18
1431
1552
1.225376
TGTTCTTGTAGCCGCCGTTG
61.225
55.000
0.00
0.00
0.00
4.10
1432
1553
1.070105
TGTTCTTGTAGCCGCCGTT
59.930
52.632
0.00
0.00
0.00
4.44
1433
1554
1.666872
GTGTTCTTGTAGCCGCCGT
60.667
57.895
0.00
0.00
0.00
5.68
1812
1943
1.403814
TATCGAACTGGAGGAGGCTG
58.596
55.000
0.00
0.00
0.00
4.85
1813
1944
2.390225
ATATCGAACTGGAGGAGGCT
57.610
50.000
0.00
0.00
0.00
4.58
1846
1977
0.251634
AGTTAGGGAAGCAGCTCAGC
59.748
55.000
0.00
0.00
0.00
4.26
1847
1978
2.763448
ACTAGTTAGGGAAGCAGCTCAG
59.237
50.000
0.00
0.00
0.00
3.35
1848
1979
2.497675
CACTAGTTAGGGAAGCAGCTCA
59.502
50.000
0.00
0.00
0.00
4.26
1849
1980
2.159028
CCACTAGTTAGGGAAGCAGCTC
60.159
54.545
0.00
0.00
0.00
4.09
1850
1981
1.834263
CCACTAGTTAGGGAAGCAGCT
59.166
52.381
0.00
0.00
0.00
4.24
1870
2001
6.420306
CGGCAGAGCATCATATAATCTGATAC
59.580
42.308
4.76
0.00
39.80
2.24
1877
2031
3.515630
CGACGGCAGAGCATCATATAAT
58.484
45.455
0.00
0.00
37.82
1.28
1903
2057
7.201350
GCCGTGAAATTCAGATTACAAATGTTC
60.201
37.037
0.00
0.00
0.00
3.18
1951
2105
9.547753
ACTTAGTTTGCATTACATATAGGAGTG
57.452
33.333
0.00
0.00
0.00
3.51
2033
2189
6.314400
GCCGTGTTATGGTAGTTTTCTTCATA
59.686
38.462
0.00
0.00
0.00
2.15
2034
2190
5.123344
GCCGTGTTATGGTAGTTTTCTTCAT
59.877
40.000
0.00
0.00
0.00
2.57
2035
2191
4.453136
GCCGTGTTATGGTAGTTTTCTTCA
59.547
41.667
0.00
0.00
0.00
3.02
2036
2192
4.694037
AGCCGTGTTATGGTAGTTTTCTTC
59.306
41.667
0.00
0.00
0.00
2.87
2038
2194
4.281898
AGCCGTGTTATGGTAGTTTTCT
57.718
40.909
0.00
0.00
0.00
2.52
2039
2195
5.503520
GCATAGCCGTGTTATGGTAGTTTTC
60.504
44.000
8.86
0.00
29.52
2.29
2040
2196
4.334481
GCATAGCCGTGTTATGGTAGTTTT
59.666
41.667
8.86
0.00
29.52
2.43
2041
2197
3.875134
GCATAGCCGTGTTATGGTAGTTT
59.125
43.478
8.86
0.00
29.52
2.66
2042
2198
3.118555
TGCATAGCCGTGTTATGGTAGTT
60.119
43.478
8.86
0.00
29.52
2.24
2044
2200
3.106242
TGCATAGCCGTGTTATGGTAG
57.894
47.619
8.86
0.00
29.52
3.18
2045
2201
3.762407
ATGCATAGCCGTGTTATGGTA
57.238
42.857
0.00
0.00
29.52
3.25
2047
2203
3.314913
TGAAATGCATAGCCGTGTTATGG
59.685
43.478
0.00
0.00
29.52
2.74
2048
2204
4.201901
TGTGAAATGCATAGCCGTGTTATG
60.202
41.667
0.00
4.24
31.48
1.90
2049
2205
3.944650
TGTGAAATGCATAGCCGTGTTAT
59.055
39.130
0.00
0.00
0.00
1.89
2050
2206
3.339141
TGTGAAATGCATAGCCGTGTTA
58.661
40.909
0.00
0.00
0.00
2.41
2051
2207
2.158559
TGTGAAATGCATAGCCGTGTT
58.841
42.857
0.00
0.00
0.00
3.32
2052
2208
1.819928
TGTGAAATGCATAGCCGTGT
58.180
45.000
0.00
0.00
0.00
4.49
2053
2209
2.355444
TCATGTGAAATGCATAGCCGTG
59.645
45.455
0.00
0.65
0.00
4.94
2054
2210
2.642427
TCATGTGAAATGCATAGCCGT
58.358
42.857
0.00
0.00
0.00
5.68
2055
2211
3.696281
TTCATGTGAAATGCATAGCCG
57.304
42.857
0.00
0.00
0.00
5.52
2065
2221
9.610705
TTTTTCAGGATTTCATTTCATGTGAAA
57.389
25.926
10.29
10.29
46.16
2.69
2066
2222
9.044150
GTTTTTCAGGATTTCATTTCATGTGAA
57.956
29.630
0.00
0.00
34.01
3.18
2099
2255
6.016276
GGTTTGTGTTCTGTAACTCATCCAAT
60.016
38.462
0.00
0.00
38.50
3.16
2142
2300
7.367285
TGTTTTGTGTTTATAGGAGTTCATGC
58.633
34.615
0.00
0.00
0.00
4.06
2207
2365
9.845214
ACTCCCTTCATACCATAATATAAGAGT
57.155
33.333
0.00
0.00
0.00
3.24
2222
2380
9.747898
TTTTGCTTAAATTCTACTCCCTTCATA
57.252
29.630
0.00
0.00
0.00
2.15
2273
2442
3.006967
GGCTTTCAGAGAACAGTGGTAGA
59.993
47.826
0.00
0.00
0.00
2.59
2805
2976
5.635700
GTCTGACCTTGATACTGAAACTGAC
59.364
44.000
0.00
0.00
0.00
3.51
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.