Multiple sequence alignment - TraesCS4D01G203500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G203500 chr4D 100.000 2846 0 0 1 2846 350501995 350499150 0.000000e+00 5256.0
1 TraesCS4D01G203500 chr4D 100.000 29 0 0 1986 2014 350499977 350499949 1.000000e-03 54.7
2 TraesCS4D01G203500 chr4D 100.000 29 0 0 2019 2047 350500010 350499982 1.000000e-03 54.7
3 TraesCS4D01G203500 chr4B 91.724 2888 112 43 1 2846 433646518 433643716 0.000000e+00 3892.0
4 TraesCS4D01G203500 chr4A 86.800 1250 79 27 979 2187 114588256 114589460 0.000000e+00 1315.0
5 TraesCS4D01G203500 chr4A 97.350 566 14 1 2282 2846 114589502 114590067 0.000000e+00 961.0
6 TraesCS4D01G203500 chr4A 93.636 110 7 0 1 110 114587498 114587607 6.310000e-37 165.0
7 TraesCS4D01G203500 chr4A 92.683 41 3 0 2195 2235 541360412 541360452 3.060000e-05 60.2
8 TraesCS4D01G203500 chr7D 90.000 50 5 0 2193 2242 523077294 523077245 6.580000e-07 65.8
9 TraesCS4D01G203500 chr7D 100.000 29 0 0 2193 2221 135673448 135673420 1.000000e-03 54.7
10 TraesCS4D01G203500 chr5A 93.182 44 3 0 2192 2235 444055259 444055216 6.580000e-07 65.8
11 TraesCS4D01G203500 chr6D 92.683 41 3 0 2195 2235 411210122 411210162 3.060000e-05 60.2
12 TraesCS4D01G203500 chr2A 100.000 30 0 0 2193 2222 747330496 747330467 3.960000e-04 56.5
13 TraesCS4D01G203500 chr6A 100.000 28 0 0 2195 2222 411942482 411942509 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G203500 chr4D 350499150 350501995 2845 True 1788.466667 5256 100.000000 1 2846 3 chr4D.!!$R1 2845
1 TraesCS4D01G203500 chr4B 433643716 433646518 2802 True 3892.000000 3892 91.724000 1 2846 1 chr4B.!!$R1 2845
2 TraesCS4D01G203500 chr4A 114587498 114590067 2569 False 813.666667 1315 92.595333 1 2846 3 chr4A.!!$F2 2845


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 919 0.10104 CACCTGCAACAACACCACTG 59.899 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 1977 0.251634 AGTTAGGGAAGCAGCTCAGC 59.748 55.0 0.0 0.0 0.0 4.26 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 4.142600 GGTGTAGCTTTTGTGGCTAGAATG 60.143 45.833 0.00 0.00 42.03 2.67
124 125 2.308570 TGTGGCTAGAATGTTCCATGGT 59.691 45.455 12.58 0.00 0.00 3.55
189 190 6.302535 TGAAAGATGGCAATGATTTGGAAT 57.697 33.333 0.00 0.00 33.22 3.01
190 191 6.110033 TGAAAGATGGCAATGATTTGGAATG 58.890 36.000 0.00 0.00 33.22 2.67
364 366 1.674322 CCAGTGGATTTTCGGCGGT 60.674 57.895 1.68 0.00 0.00 5.68
435 439 4.017177 AGCCTTCCTTGTTTGGTACTAC 57.983 45.455 0.00 0.00 0.00 2.73
438 442 5.046520 AGCCTTCCTTGTTTGGTACTACTAG 60.047 44.000 0.00 0.00 0.00 2.57
439 443 5.279859 GCCTTCCTTGTTTGGTACTACTAGT 60.280 44.000 0.00 0.00 0.00 2.57
440 444 6.071165 GCCTTCCTTGTTTGGTACTACTAGTA 60.071 42.308 1.89 1.89 0.00 1.82
451 455 9.918630 TTTGGTACTACTAGTATGTTTTGACTC 57.081 33.333 2.33 0.00 32.65 3.36
454 458 7.701501 GGTACTACTAGTATGTTTTGACTCTGC 59.298 40.741 2.33 0.00 32.65 4.26
511 564 2.093021 AGAGAGCTCCATCTTCTTTGGC 60.093 50.000 10.93 0.00 34.06 4.52
532 585 1.133976 GCCTCTTGTGGGTGATGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
585 638 1.071471 CAGCTTGGACGTGAACCCT 59.929 57.895 0.00 0.00 0.00 4.34
586 639 0.535102 CAGCTTGGACGTGAACCCTT 60.535 55.000 0.00 0.00 0.00 3.95
587 640 0.535102 AGCTTGGACGTGAACCCTTG 60.535 55.000 0.00 0.00 0.00 3.61
588 641 1.949257 CTTGGACGTGAACCCTTGC 59.051 57.895 0.00 0.00 0.00 4.01
589 642 0.817634 CTTGGACGTGAACCCTTGCA 60.818 55.000 0.00 0.00 0.00 4.08
590 643 0.817634 TTGGACGTGAACCCTTGCAG 60.818 55.000 0.00 0.00 0.00 4.41
591 644 1.966451 GGACGTGAACCCTTGCAGG 60.966 63.158 0.00 0.00 34.30 4.85
631 684 0.770499 TTCAACAGATCACTGCCCCA 59.230 50.000 0.00 0.00 46.95 4.96
673 726 2.109799 CGGATCAATGCCTCGCCT 59.890 61.111 0.00 0.00 0.00 5.52
690 743 2.604079 TGTTGCCCTGGCCATTGG 60.604 61.111 5.51 11.97 41.09 3.16
691 744 3.393106 GTTGCCCTGGCCATTGGG 61.393 66.667 23.22 23.22 46.00 4.12
692 745 4.718827 TTGCCCTGGCCATTGGGG 62.719 66.667 27.17 24.60 43.53 4.96
713 766 0.321564 ATGTGGTGTGTGTGATCCGG 60.322 55.000 0.00 0.00 0.00 5.14
741 794 3.771577 ACTGTTCCTCGTTTCTCCATT 57.228 42.857 0.00 0.00 0.00 3.16
743 796 4.822026 ACTGTTCCTCGTTTCTCCATTAG 58.178 43.478 0.00 0.00 0.00 1.73
754 807 9.834628 CTCGTTTCTCCATTAGTAGATTAGATC 57.165 37.037 0.00 0.00 0.00 2.75
852 916 3.205395 GCACCTGCAACAACACCA 58.795 55.556 0.00 0.00 41.59 4.17
854 918 1.666209 GCACCTGCAACAACACCACT 61.666 55.000 0.00 0.00 41.59 4.00
855 919 0.101040 CACCTGCAACAACACCACTG 59.899 55.000 0.00 0.00 0.00 3.66
856 920 1.066257 CCTGCAACAACACCACTGC 59.934 57.895 0.00 0.00 35.32 4.40
857 921 1.386525 CCTGCAACAACACCACTGCT 61.387 55.000 0.00 0.00 35.78 4.24
862 932 2.930455 GCAACAACACCACTGCTTTTGT 60.930 45.455 0.00 0.00 31.74 2.83
869 939 2.884012 CACCACTGCTTTTGTACATCCA 59.116 45.455 0.00 0.00 0.00 3.41
877 947 4.590647 TGCTTTTGTACATCCAAAATCCCA 59.409 37.500 0.00 0.00 41.88 4.37
891 961 8.650143 TCCAAAATCCCAATATAAATCTAGCC 57.350 34.615 0.00 0.00 0.00 3.93
936 1026 1.892468 CAGTCACCGCTACGAGTAAC 58.108 55.000 0.00 0.00 0.00 2.50
939 1029 1.226491 CACCGCTACGAGTAACCCG 60.226 63.158 0.00 0.00 0.00 5.28
941 1031 2.278401 CGCTACGAGTAACCCGCC 60.278 66.667 0.00 0.00 0.00 6.13
942 1032 2.768492 CGCTACGAGTAACCCGCCT 61.768 63.158 0.00 0.00 0.00 5.52
944 1034 1.436336 CTACGAGTAACCCGCCTGG 59.564 63.158 0.00 0.00 41.37 4.45
945 1035 1.001020 TACGAGTAACCCGCCTGGA 60.001 57.895 0.00 0.00 37.49 3.86
946 1036 1.033746 TACGAGTAACCCGCCTGGAG 61.034 60.000 0.00 0.00 37.49 3.86
947 1037 2.050350 CGAGTAACCCGCCTGGAGA 61.050 63.158 0.00 0.00 37.49 3.71
950 1041 1.218316 GTAACCCGCCTGGAGAGTG 59.782 63.158 0.00 0.00 37.49 3.51
955 1046 2.351244 CCGCCTGGAGAGTGTAGCA 61.351 63.158 0.00 0.00 37.49 3.49
987 1078 0.892063 GAGTTCTTGCTCTCCTCCGT 59.108 55.000 0.00 0.00 32.99 4.69
1243 1349 3.977244 CTGGTGCAACGGCCAACC 61.977 66.667 2.24 2.37 40.13 3.77
1419 1540 1.220206 CAGCCTCGTCCAGAGCAAT 59.780 57.895 0.00 0.00 45.54 3.56
1420 1541 1.088340 CAGCCTCGTCCAGAGCAATG 61.088 60.000 0.00 0.00 45.54 2.82
1421 1542 1.817099 GCCTCGTCCAGAGCAATGG 60.817 63.158 0.83 0.83 45.54 3.16
1422 1543 1.817099 CCTCGTCCAGAGCAATGGC 60.817 63.158 2.40 0.00 45.54 4.40
1423 1544 1.078918 CTCGTCCAGAGCAATGGCA 60.079 57.895 0.00 0.00 44.61 4.92
1424 1545 0.674581 CTCGTCCAGAGCAATGGCAA 60.675 55.000 0.00 0.00 44.61 4.52
1425 1546 0.955428 TCGTCCAGAGCAATGGCAAC 60.955 55.000 0.00 0.00 44.61 4.17
1426 1547 1.503542 GTCCAGAGCAATGGCAACG 59.496 57.895 0.00 0.00 44.61 4.10
1427 1548 2.180017 CCAGAGCAATGGCAACGC 59.820 61.111 0.00 3.48 44.61 4.84
1501 1631 2.685380 CGCCCCAGAACCTCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
1830 1961 0.616111 ACAGCCTCCTCCAGTTCGAT 60.616 55.000 0.00 0.00 0.00 3.59
1846 1977 4.582656 AGTTCGATATTCACCTCTCCTGAG 59.417 45.833 0.00 0.00 39.92 3.35
1847 1978 2.887783 TCGATATTCACCTCTCCTGAGC 59.112 50.000 0.00 0.00 38.93 4.26
1848 1979 2.890311 CGATATTCACCTCTCCTGAGCT 59.110 50.000 0.00 0.00 38.93 4.09
1849 1980 3.305267 CGATATTCACCTCTCCTGAGCTG 60.305 52.174 0.00 0.00 38.93 4.24
1850 1981 2.244486 ATTCACCTCTCCTGAGCTGA 57.756 50.000 0.00 0.00 38.93 4.26
1870 2001 1.834263 AGCTGCTTCCCTAACTAGTGG 59.166 52.381 0.00 0.00 0.00 4.00
1877 2031 4.894114 GCTTCCCTAACTAGTGGTATCAGA 59.106 45.833 0.00 0.00 0.00 3.27
1951 2105 6.348213 CGGCCTATGCATTTTACTACCATAAC 60.348 42.308 3.54 0.00 40.13 1.89
1984 2140 6.795098 TGTAATGCAAACTAAGTACTGGTG 57.205 37.500 0.00 0.00 0.00 4.17
2057 2213 6.737254 ATGAAGAAAACTACCATAACACGG 57.263 37.500 0.00 0.00 0.00 4.94
2058 2214 4.453136 TGAAGAAAACTACCATAACACGGC 59.547 41.667 0.00 0.00 0.00 5.68
2059 2215 4.281898 AGAAAACTACCATAACACGGCT 57.718 40.909 0.00 0.00 0.00 5.52
2060 2216 5.410355 AGAAAACTACCATAACACGGCTA 57.590 39.130 0.00 0.00 0.00 3.93
2061 2217 5.985911 AGAAAACTACCATAACACGGCTAT 58.014 37.500 0.00 0.00 0.00 2.97
2062 2218 5.815740 AGAAAACTACCATAACACGGCTATG 59.184 40.000 0.00 0.00 0.00 2.23
2063 2219 3.107642 ACTACCATAACACGGCTATGC 57.892 47.619 0.00 0.00 0.00 3.14
2064 2220 2.432874 ACTACCATAACACGGCTATGCA 59.567 45.455 0.00 0.00 0.00 3.96
2065 2221 2.638480 ACCATAACACGGCTATGCAT 57.362 45.000 3.79 3.79 0.00 3.96
2066 2222 2.930950 ACCATAACACGGCTATGCATT 58.069 42.857 3.54 0.00 0.00 3.56
2099 2255 9.965824 GAAATGAAATCCTGAAAAACTGAACTA 57.034 29.630 0.00 0.00 0.00 2.24
2142 2300 2.851195 ACCACACCAAAAGCAGAGTAG 58.149 47.619 0.00 0.00 0.00 2.57
2231 2389 9.615660 ACACTCTTATATTATGGTATGAAGGGA 57.384 33.333 0.00 0.00 0.00 4.20
2805 2976 3.808728 TCAAACAAGAAGTGGAGGTCAG 58.191 45.455 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 190 2.373836 TGAGAAATTTCCCGGAGTTCCA 59.626 45.455 14.61 0.00 35.14 3.53
190 191 3.067684 TGAGAAATTTCCCGGAGTTCC 57.932 47.619 14.61 0.00 0.00 3.62
364 366 8.685427 CCAAAATTTCACATGTATACTCCATCA 58.315 33.333 0.00 0.00 0.00 3.07
397 401 3.227614 AGGCTAATGCATGCATGATCAA 58.772 40.909 32.79 15.11 41.91 2.57
406 410 4.178540 CAAACAAGGAAGGCTAATGCATG 58.821 43.478 0.00 0.00 41.91 4.06
409 413 2.562738 ACCAAACAAGGAAGGCTAATGC 59.437 45.455 0.00 0.00 38.76 3.56
410 414 5.010282 AGTACCAAACAAGGAAGGCTAATG 58.990 41.667 0.00 0.00 0.00 1.90
435 439 6.584942 TGTAACGCAGAGTCAAAACATACTAG 59.415 38.462 0.00 0.00 0.00 2.57
438 442 5.585500 TGTAACGCAGAGTCAAAACATAC 57.415 39.130 0.00 0.00 0.00 2.39
439 443 5.929415 TCATGTAACGCAGAGTCAAAACATA 59.071 36.000 0.00 0.00 0.00 2.29
440 444 4.754618 TCATGTAACGCAGAGTCAAAACAT 59.245 37.500 0.00 0.00 0.00 2.71
451 455 3.065786 AGGCATCATTTCATGTAACGCAG 59.934 43.478 0.00 0.00 0.00 5.18
454 458 5.401550 ACAAAGGCATCATTTCATGTAACG 58.598 37.500 0.00 0.00 0.00 3.18
493 545 1.012841 CGCCAAAGAAGATGGAGCTC 58.987 55.000 4.71 4.71 40.56 4.09
494 546 3.165606 CGCCAAAGAAGATGGAGCT 57.834 52.632 0.00 0.00 40.56 4.09
502 554 0.239347 CACAAGAGGCGCCAAAGAAG 59.761 55.000 31.54 15.33 0.00 2.85
511 564 2.401766 GCATCACCCACAAGAGGCG 61.402 63.158 0.00 0.00 31.65 5.52
532 585 1.311859 CAAGAAGCAGCAACCACAGA 58.688 50.000 0.00 0.00 0.00 3.41
631 684 4.778143 GGTGGCAGAACCGGCGAT 62.778 66.667 9.30 0.00 43.94 4.58
673 726 2.604079 CCAATGGCCAGGGCAACA 60.604 61.111 21.65 5.95 42.43 3.33
684 737 1.610086 ACACCACATGCCCCAATGG 60.610 57.895 0.00 0.00 38.26 3.16
685 738 1.186917 ACACACCACATGCCCCAATG 61.187 55.000 0.00 0.00 0.00 2.82
686 739 1.155859 ACACACCACATGCCCCAAT 59.844 52.632 0.00 0.00 0.00 3.16
687 740 1.831726 CACACACCACATGCCCCAA 60.832 57.895 0.00 0.00 0.00 4.12
690 743 0.895100 ATCACACACACCACATGCCC 60.895 55.000 0.00 0.00 0.00 5.36
691 744 0.523072 GATCACACACACCACATGCC 59.477 55.000 0.00 0.00 0.00 4.40
692 745 0.523072 GGATCACACACACCACATGC 59.477 55.000 0.00 0.00 0.00 4.06
693 746 0.798159 CGGATCACACACACCACATG 59.202 55.000 0.00 0.00 0.00 3.21
694 747 0.321564 CCGGATCACACACACCACAT 60.322 55.000 0.00 0.00 0.00 3.21
695 748 1.070615 CCGGATCACACACACCACA 59.929 57.895 0.00 0.00 0.00 4.17
696 749 2.325082 GCCGGATCACACACACCAC 61.325 63.158 5.05 0.00 0.00 4.16
697 750 2.031919 GCCGGATCACACACACCA 59.968 61.111 5.05 0.00 0.00 4.17
698 751 1.741770 GAGCCGGATCACACACACC 60.742 63.158 16.44 0.00 0.00 4.16
713 766 0.318762 ACGAGGAACAGTTGGAGAGC 59.681 55.000 0.00 0.00 0.00 4.09
741 794 4.838986 GTGCCCAAGGGATCTAATCTACTA 59.161 45.833 9.92 0.00 37.50 1.82
743 796 3.555168 CGTGCCCAAGGGATCTAATCTAC 60.555 52.174 9.92 0.00 37.50 2.59
754 807 1.524621 CAGATAGCGTGCCCAAGGG 60.525 63.158 0.00 0.00 38.57 3.95
847 911 2.884639 GGATGTACAAAAGCAGTGGTGT 59.115 45.455 0.00 0.00 0.00 4.16
850 914 4.582701 TTTGGATGTACAAAAGCAGTGG 57.417 40.909 0.00 0.00 37.40 4.00
869 939 9.432982 TGTTGGCTAGATTTATATTGGGATTTT 57.567 29.630 0.00 0.00 0.00 1.82
877 947 7.670979 TGGATGCATGTTGGCTAGATTTATATT 59.329 33.333 2.46 0.00 34.04 1.28
936 1026 3.082579 GCTACACTCTCCAGGCGGG 62.083 68.421 0.00 0.00 38.37 6.13
939 1029 1.153469 GCTGCTACACTCTCCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
941 1031 0.975040 AGGGCTGCTACACTCTCCAG 60.975 60.000 0.00 0.00 0.00 3.86
942 1032 0.972983 GAGGGCTGCTACACTCTCCA 60.973 60.000 0.00 0.00 0.00 3.86
944 1034 1.681486 GGGAGGGCTGCTACACTCTC 61.681 65.000 8.43 1.22 0.00 3.20
945 1035 1.687493 GGGAGGGCTGCTACACTCT 60.687 63.158 8.43 0.00 0.00 3.24
946 1036 1.553690 TTGGGAGGGCTGCTACACTC 61.554 60.000 0.00 0.61 0.00 3.51
947 1037 1.538876 TTGGGAGGGCTGCTACACT 60.539 57.895 0.00 0.00 0.00 3.55
950 1041 1.078143 CTGTTGGGAGGGCTGCTAC 60.078 63.158 0.00 0.00 0.00 3.58
955 1046 0.474660 AGAACTCTGTTGGGAGGGCT 60.475 55.000 0.00 0.00 37.63 5.19
987 1078 3.364441 GCCATCTTGGTGCGTGCA 61.364 61.111 0.00 0.00 40.46 4.57
1027 1124 3.540014 CGTCAGAGCAAGCGCGAG 61.540 66.667 12.10 0.00 45.49 5.03
1141 1238 2.741092 CACCGGCACTACCACTGT 59.259 61.111 0.00 0.00 39.03 3.55
1226 1332 3.977244 GGTTGGCCGTTGCACCAG 61.977 66.667 0.00 0.00 40.13 4.00
1428 1549 2.726691 CTTGTAGCCGCCGTTGACG 61.727 63.158 0.00 0.00 39.44 4.35
1429 1550 0.947180 TTCTTGTAGCCGCCGTTGAC 60.947 55.000 0.00 0.00 0.00 3.18
1430 1551 0.947180 GTTCTTGTAGCCGCCGTTGA 60.947 55.000 0.00 0.00 0.00 3.18
1431 1552 1.225376 TGTTCTTGTAGCCGCCGTTG 61.225 55.000 0.00 0.00 0.00 4.10
1432 1553 1.070105 TGTTCTTGTAGCCGCCGTT 59.930 52.632 0.00 0.00 0.00 4.44
1433 1554 1.666872 GTGTTCTTGTAGCCGCCGT 60.667 57.895 0.00 0.00 0.00 5.68
1812 1943 1.403814 TATCGAACTGGAGGAGGCTG 58.596 55.000 0.00 0.00 0.00 4.85
1813 1944 2.390225 ATATCGAACTGGAGGAGGCT 57.610 50.000 0.00 0.00 0.00 4.58
1846 1977 0.251634 AGTTAGGGAAGCAGCTCAGC 59.748 55.000 0.00 0.00 0.00 4.26
1847 1978 2.763448 ACTAGTTAGGGAAGCAGCTCAG 59.237 50.000 0.00 0.00 0.00 3.35
1848 1979 2.497675 CACTAGTTAGGGAAGCAGCTCA 59.502 50.000 0.00 0.00 0.00 4.26
1849 1980 2.159028 CCACTAGTTAGGGAAGCAGCTC 60.159 54.545 0.00 0.00 0.00 4.09
1850 1981 1.834263 CCACTAGTTAGGGAAGCAGCT 59.166 52.381 0.00 0.00 0.00 4.24
1870 2001 6.420306 CGGCAGAGCATCATATAATCTGATAC 59.580 42.308 4.76 0.00 39.80 2.24
1877 2031 3.515630 CGACGGCAGAGCATCATATAAT 58.484 45.455 0.00 0.00 37.82 1.28
1903 2057 7.201350 GCCGTGAAATTCAGATTACAAATGTTC 60.201 37.037 0.00 0.00 0.00 3.18
1951 2105 9.547753 ACTTAGTTTGCATTACATATAGGAGTG 57.452 33.333 0.00 0.00 0.00 3.51
2033 2189 6.314400 GCCGTGTTATGGTAGTTTTCTTCATA 59.686 38.462 0.00 0.00 0.00 2.15
2034 2190 5.123344 GCCGTGTTATGGTAGTTTTCTTCAT 59.877 40.000 0.00 0.00 0.00 2.57
2035 2191 4.453136 GCCGTGTTATGGTAGTTTTCTTCA 59.547 41.667 0.00 0.00 0.00 3.02
2036 2192 4.694037 AGCCGTGTTATGGTAGTTTTCTTC 59.306 41.667 0.00 0.00 0.00 2.87
2038 2194 4.281898 AGCCGTGTTATGGTAGTTTTCT 57.718 40.909 0.00 0.00 0.00 2.52
2039 2195 5.503520 GCATAGCCGTGTTATGGTAGTTTTC 60.504 44.000 8.86 0.00 29.52 2.29
2040 2196 4.334481 GCATAGCCGTGTTATGGTAGTTTT 59.666 41.667 8.86 0.00 29.52 2.43
2041 2197 3.875134 GCATAGCCGTGTTATGGTAGTTT 59.125 43.478 8.86 0.00 29.52 2.66
2042 2198 3.118555 TGCATAGCCGTGTTATGGTAGTT 60.119 43.478 8.86 0.00 29.52 2.24
2044 2200 3.106242 TGCATAGCCGTGTTATGGTAG 57.894 47.619 8.86 0.00 29.52 3.18
2045 2201 3.762407 ATGCATAGCCGTGTTATGGTA 57.238 42.857 0.00 0.00 29.52 3.25
2047 2203 3.314913 TGAAATGCATAGCCGTGTTATGG 59.685 43.478 0.00 0.00 29.52 2.74
2048 2204 4.201901 TGTGAAATGCATAGCCGTGTTATG 60.202 41.667 0.00 4.24 31.48 1.90
2049 2205 3.944650 TGTGAAATGCATAGCCGTGTTAT 59.055 39.130 0.00 0.00 0.00 1.89
2050 2206 3.339141 TGTGAAATGCATAGCCGTGTTA 58.661 40.909 0.00 0.00 0.00 2.41
2051 2207 2.158559 TGTGAAATGCATAGCCGTGTT 58.841 42.857 0.00 0.00 0.00 3.32
2052 2208 1.819928 TGTGAAATGCATAGCCGTGT 58.180 45.000 0.00 0.00 0.00 4.49
2053 2209 2.355444 TCATGTGAAATGCATAGCCGTG 59.645 45.455 0.00 0.65 0.00 4.94
2054 2210 2.642427 TCATGTGAAATGCATAGCCGT 58.358 42.857 0.00 0.00 0.00 5.68
2055 2211 3.696281 TTCATGTGAAATGCATAGCCG 57.304 42.857 0.00 0.00 0.00 5.52
2065 2221 9.610705 TTTTTCAGGATTTCATTTCATGTGAAA 57.389 25.926 10.29 10.29 46.16 2.69
2066 2222 9.044150 GTTTTTCAGGATTTCATTTCATGTGAA 57.956 29.630 0.00 0.00 34.01 3.18
2099 2255 6.016276 GGTTTGTGTTCTGTAACTCATCCAAT 60.016 38.462 0.00 0.00 38.50 3.16
2142 2300 7.367285 TGTTTTGTGTTTATAGGAGTTCATGC 58.633 34.615 0.00 0.00 0.00 4.06
2207 2365 9.845214 ACTCCCTTCATACCATAATATAAGAGT 57.155 33.333 0.00 0.00 0.00 3.24
2222 2380 9.747898 TTTTGCTTAAATTCTACTCCCTTCATA 57.252 29.630 0.00 0.00 0.00 2.15
2273 2442 3.006967 GGCTTTCAGAGAACAGTGGTAGA 59.993 47.826 0.00 0.00 0.00 2.59
2805 2976 5.635700 GTCTGACCTTGATACTGAAACTGAC 59.364 44.000 0.00 0.00 0.00 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.