>input_sequence_67281
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--------------------------------------------------ATGGCCAAGGCGGCGCTCTG------CATG
ATGCTCGCGCTTGCTCTGACGAGCTGCGCATTCGCCGGCCGCGTCCTCAACGAGCATCCTGCCGCGCCTCCGGTAGAGGC
CGATCCGTTGCCGGGGCCGACCGAGCCGCCTGTCGACACAGTGGTAGTGCCGGTGCCCG------CG---GCGGCGTCGC
CTTTGCCATCCGATGCCGCGGGCGCCGCAGGAGTAGCTCCGGCCGCGGGTGCTGGTGCAACGGCCAACCTAGGAGCCGGT
GTGGCTGCAGGCGCCGGCGACAGCCCGCTGACGTTCTTCATGCACGACATCCTCGGCAGCTCGTCGCAGCCGTCAGCGCT
CATGGTGACCGGGGTGGTGGCGAGCGCCGACGACCTGGCCAGCAGCAACAACGTCGTCCCCTACGACAGCCTCGTCCAGA
G---------------CAATGGCAACGCCGTCAACGGCGGCTACAAGAACACCATCCCCTCCGTCAACG---CTGGCGGC
GGCGCCACGC------CCCAGAACCTCCTCTTCGGCATGACCACCGTCGTGG-ACGAGGAGCTCGCCGGGGGCCACGAGC
TCGGCGCCGCGGCCGTCGGCAGGGCGCAGGGGTTCTACGTCGCGAGCTCGCAGGACGGCAGCAGCAAGACGGTCGTGCTG
ACGGCCCTGTTCGGCGGCGAAGCGCACGGCGACACGCTCAGCTTCTTCGGGGTGCACCGGACGGGGGCGCAAGAGTCCCG
CATCGCCGTCATCGGCGGCACAGGGAAGTACGAGACCGCCAAGGGCTTCGCCGCCATCCGCACACTGCACCCCGGCGACC
AGCACGCCACCGACGGCGTCGACAGCCTCCTCCAGTTCGATATTCACCTCTCCTGA------------------------
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>chr4D_1_TraesCS4D01G203500
GCATCGATCTTGTTGGGGGCGAGATAGAGAGGATGTTGCTTAAGGATCTTGTGGTGGAAACCATTGCTGAGTTCCTGGGG
ACAAGATAATCTGGTGTAGCTTTTGTGGCTAGAATGTTCCATGGTTTGGCACCAATTGCCATTTGCGGTGGTTGGTGTTT
TACTGATGAAAGATGGCAATGATTTGGAATGGAACTCCGGGAAATTTCTCATGCCTAGAGCAACTGATGTGGCTGTAGGT
TTGTAGCGAATCGTCCTACAAGTGAAGGGATCTTCTGGTTGTAAGTATTAGCTGTAATAACTGTGGCCTAGGGTTTTCCC
CCTATTTCCCTCCCAACTGGAG-AAAACCAGTGGATTTTCGGCGGT--GATGGAGTATACATGTGAAATTTTGGTATGAA
TTGATCATGCATGCATTAGCCTTCCTTGTTTGGTACTACTAGTATGTTTTGACTCTGCGTTACATGAAATGATGCCTTTG
TTAG------------------------------------------------TTGCAAAAAAGAGAGCTCCATCTT-CTT
TGGCGCCTCTTGTGGGTGATGCTATCTGTGGTTGCTGCTTCTTGGGCAAATTTCAACCTCAGCTTGGACGTGAACCCTTG
CAGGTTGCAGCCGTGCCGATTTGCTTCAACAGATCACTGCCCCATCGCCGGTTCTGCCACCAACTCCTCGGATCAATGCC
TCGCCTGTTGCCCTGGCCATTGGGGCATGTGGTGTGTGTGATCCGGCTCTCCAACTGTTCCTCGTTTCTCCATTAGTAGA
TTAGATCCCTTGGGCACGCTATCTGATGCAACTACTGCAACACCACAAGGGCGTCCAGC----AGCAACAACTCCACCC-
------GTGCCGCGGCCTGCACCTGCAACAACACCACTGCT------TTTGTACATCCAAAATCCCAATATAAATCTAGC
CAA------CATGCAT----CCATG----------CACATCAGCAGCAGTCACCGCTACGAGTAACCCGCCTGGAGA-GT
GTAGCAGCCCTCCCAACAGAGTTCTTGCTCTCCTCCGTGCACGCACCAAGATGGCCAAGGCGGCGCTCTG------CATG
ATGCTCGCGCTTGCTCTGACGAGCTGCGCATTCGCCGGCCGCGTCCTCAACGAGCATCCTGCCGCGCCTCCGGTAGAGGC
CGATCCGTTGCCGGGGCCGACCGAGCCGCCTGTCGACACAGTGGTAGTGCCGGTGCCCG------CG---GCGGCGTCGC
CTTTGCCATCCGATGCCGCGGGCGCCGCAGGAGTAGCTCCGGCCGCGGGTGCTGGTGCAACGGCCAACCTAGGAGCCGGT
GTGGCTGCAGGCGCCGGCGACAGCCCGCTGACGTTCTTCATGCACGACATCCTCGGCAGCTCGTCGCAGCCGTCAGCGCT
CATGGTGACCGGGGTGGTGGCGAGCGCCGACGACCTGGCCAGCAGCAACAACGTCGTCCCCTACGACAGCCTCGTCCAGA
G---------------CAATGGCAACGCCGTCAACGGCGGCTACAAGAACACCATCCCCTCCGTCAACG---CTGGCGGC
GGCGCCACGC------CCCAGAACCTCCTCTTCGGCATGACCACCGTCGTGG-ACGAGGAGCTCGCCGGGGGCCACGAGC
TCGGCGCCGCGGCCGTCGGCAGGGCGCAGGGGTTCTACGTCGCGAGCTCGCAGGACGGCAGCAGCAAGACGGTCGTGCTG
ACGGCCCTGTTCGGCGGCGAAGCGCACGGCGACACGCTCAGCTTCTTCGGGGTGCACCGGACGGGGGCGCAAGAGTCCCG
CATCGCCGTCATCGGCGGCACAGGGAAGTACGAGACCGCCAAGGGCTTCGCCGCCATCCGCACACTGCACCCCGGCGACC
AGCACGCCACCGACGGCGTCGACAGCCTCCTCCAGTTCGATATTCACCTCTCCTGAGCTGAGCTGCTTCCCTAACTAGTG
GTAT-----------------------CAGATTATATGATGCTCTGCCGTCGCGCTGAACATTTGTAATCTGAATTTCAC
GGCCTATGCATTTTACTACCATAACACTCCTATATGTAATGCAAACTAAGT--ACTGGTGTATTTATGCATATTTTATGA
AGAAAACTAAGTATATTTATGCATATTTTATGAAGAAAACTACCATAACACGGCTATGCATTTCACATGAAATGAAATCC
TGAAAAACTGAACTATT-GGATGAG-TTACAGAACACAAACCACACCAAAAGCAGAGTAGCATGAACTCCTATAAACACA
AAACAAATGGGTGCCAGAATACTACTCCCTGTAGTATAAAAAACACTCTTATATTATGGTATGAAGGGAGTAGAATTTAA
GCAA------AA-----AAAAACTCTGTATTTATGTAAATTTCTACCACTGTTCTCTGAAAGCCTAAGGAGTTGACAAGA
ACATGATCACATGATTCTGATTTCCGAGACAAAACTTATGTATCAATGAAACTAAAATCAAGTAACGCATGTCATGTCAC
TAAAGAGTTGCCTGGAAGAAGAATCCTGGGTAAGCTATCTGTAATCTATACGCCTGCAGCCGAGCTTGCCAAGGCACTAA
AAA-CGCTCCGTGTGAAGTATAATACAGATCCGACTTCGGTAACTCCTGCCCCTCATTTCTCATCCAAGATGCGTTTCTG
GAAGTCCGAAACCATACGTGGCAGGCCTTGCTTCAGAGAGACTTTTGGCTCCCAATTGAGAAGAGATTTGGCCTTTGAGA
TGTCAGGTTTTCTCATGTGCGGATCATCGGCGGTGTTGGGTTTAAATTCAACACGCGCACTTGGGTCAATTGTCTCTTTC
ACTACCTGTGGAATATAGTGCGGAAACGTTATTCCATATAGGCAAAAAATATAT-TAAAAAATCCACTTTATGTTCAAAC
AAGAAGTGGAGGTCAGTCAGTTTCAGTATCAAGGTCAGACCTGAGCAAGCTCCAAC
>chr4B_1
GCATCGATCTTGTTGGGGGCGAGATAGAGAGGATGTTGCTTAAGGATCTTGTGGGGGAAACCATTGCCGAGTTCCTGGGG
ATAACATAATCTGGTATATCTTTTGTGGCTAGAATATTCCATGGGTTGGCACCAATTGCCGTTTGCGGTGGTTGGTGTTT
TACTGATGAAAGATGGCAAGGATTTGGAAATGAACTCCGGGAAATTTCTCATGCCTAGAGCAACTGATGTGGCTGTAGGT
TTGTAGCGAATCGTCCTACAAGTGAAGGGATCTTCTGGTTGTAAGTATTAGCTGTAATAACTGTGGCCTAGGGTTTTCCC
CCTATTTCCCTCCCAACTGGAG-AAAACCAGTGGATTTTCGGCGG-----TGGAGTATACATGTGAAATTTTGGTATGCA
GTGATCATGG----ATTATCCTTCCTTGTTTGGTACTAGTA---TGTTTTAACTGCGTGTTACATGAAATGATGCCTTTG
TTAG------------------------------------------------TTGCAAAAAAAGAGAGCCCCATTTGCTT
TGGTGCCTCTTGTGGGTGATGCTAGCTGTGGTTGCTGCTTCTTGGGCAAATTTCAACCTCAGCTTGGACGTGAACCC---
----TTGCAGCCGTGCCGATTTGCTTCAACAGATCACTGCCCCGTCGCCGGTTCTGCCACCAACTCCTCGGATCAATGCC
TCGCCGGTTGCCCATGTGTGTGT--------GTGTGTGTGATCCGACTCTCCAACTGTTCCTCGTTTCTCCAT---TAGA
TTAGATTCCTTGGGCACGCTACCTGATGCAACTACTGCAACACCACAAGGGCGCCCAGC----AGCAACAACTCCACCC-
------GTGCCGCGGCCTGCACCTGTAACAGCATCGC-------TGCTTTGCACATCCGAAATCCCTATATAAATCTAGG
AGTATCTAGCATGCAT----CCATGCAACAAACACCACACCAGCAGCAGTCACCGCTACGAGTAATCCACTGGTGAGTGT
ATAGCTGCCCTCCCAACAGAGTTCTTGCTCTCCTCCGCTCACGCACCAAGATGTCCAAGGCGGCGCTCTG------CATG
ATGGTCGCGCTTGCTCTGACGAGCTGCGCATTCGCCGGCCGCGTCCTCAACGAGCATCCCGCCGCGCCTCCGGTACAGGC
CGATCCATTGCCGGGGCCGACCGAGCCGCCTGTCGACCCAGTGGTAGTGCCGGTGCCCACGCCCGCGCCCGCGTCGTCGT
CTTTGCCATCCGATGCCGCGGGCGCCGCAGGAGTAGCTCCGGCCACGGGTGTAGGTGCAACCGCCAACGTAGGAGCCGGT
GTGGCTGCAGGCGCCGGCGACAGCCCGCTGACGTTCTTCATGCACGACATCCTCGGCGGCTCGTCGCAGCCGTCGGCGCT
CATGGCGACCGGGGTGGTGGCGAGCGCCACCGACCTGGCCAGCAGCAACAGCGTCGTCCCCTACGACAGCCTCGTCCAGA
G---------------CAA---------------CGGCGGCTACAAGAACACCATCCCCTCCGTCAACG---CTGGCGGT
GGCGCCACGC------CCCAGAACCTCCTCCTCGGCATGACCACCGTCGT-G-ACGAGGAGCTCGCCGGGGGCCACGAGC
TCGGCGCCGCGGCCGTCGGCAGGGCGCAGGGGTTCTACGTCGCGAGCTCGCAGGACGGAAGCAGCAAGACGGTCGTGCTG
ACGGCCATGTTCGGCGGCGAAGTGCACGGCGACACGCTCAGCTTCTTCGGGGTGCACCGGACGGCGGCGCAACAGTCCCG
CATCGCCGTCATCGGCGGCACAGGGAAGTATGAGACCGCCAAGGGCTTCGCCGCCATCCGCACGCTGCACCCCGGCGACC
AGCACACCACCGACGGCGTCGAGGGCCTCCTCCAGTTCGACATTCACCTCTCCTGA-----ACTGCTTCCCTAACTAGTG
CTTTACAAGT--------------------GTTATATGATGCTCTGCCG---CGCTCAACATTTGTAATCCAAATTTCAC
GGCCTATGCATTT-----------TACTCCTGTATGTAATGCAAACTAAGT--A------TATTTATGCATATTTG-TGA
AGAAAACTAAGTATATTTATGCATATTTATGCATACTTATGATGTCCCGGG-----------TCACATGAAATGAAATCC
TGAAAAACTGAACTGTTCGGATGAG-TTACAGAACACAAACCATACCAAAAGCAGAGTATCATGAACTCCTATAAACACA
AAACAAATGGGTGCCAGAATACTACTCCCTGTAGTGTCAAAAACGCTCTTATATTATGGGATGGAGGCGGTAGAATTTAA
GCAAAAATGAAA-----AAAAACTCTGTATTTATGTAAATTCCTACCACTGTTCTCTGAAAGCCTAAGGAGTTGACAAGA
ACATGATCACGTGATTCTGATTTCCGAGACAAAACTTATGTATCAACGAAACTAAAATCAAGTAACGCATGTCATGTCAC
TAAAGAGTTGCCTGGAAGAAGAATCCTGGGTAAGCTATCTGTAATGTATACGCCTGCAGCCGAGCTTGCCAAGGCACTAA
AAAACGCTCCGTGTGAAGTATAATACAGATCCGACTTCGGTAACTCCTGCCCCTCATTTCTCATCCAAGATGCGTTTCTG
GAAGTCCGAAACCATACGTGGCAGGCCTTGCTTCAGAGAGACTTTTGGCTCCCAATTGAGAAGAGATTTGGCCTTTGAGA
TGTCAGGTTTTCTCATGTGCGGATCATCGGCGGTGTTGGGTTTAAATTCAACACGCGCACTTGGGTCAATTGTCTCTTTC
ACTACCTGTGGAATATAGTGCGGAAACGTTATTCCTAACAGGCAAAAATATATATTAAAAAATCCACTTTATGTTCAGAC
AAGAAGTGGAGGTCACTCAGTTTCAGTATCAAGGTCAGACCTGAGCAAGCTCCAAC
>chr4A_1
GCGTCGATCTTGTCGGGAGGGAGATGGAGAGGATGTTGCTTAAGGATCTTGTGGTGGAAACCATTGCTGAGTTCCTGGGG
ACAGGATAATCTGGTGTAGCTTTTGTTGCTCCAT---------GGTTTGCAGCGATTGCCATTTGAGCAGCTGAGATGCC
GTAGGTTCGTTGTAGTGGATCATCATACAGACAGAG--------------------------------------------
-----------------ACAGGTGAAGGGATG---TGGTTGTAACTATTAGTTGTAATAACTGTGGCCTAGGGTTC----
-------CCCTCCCAACTGGAGAAAAACCAGTGGATTTTCGGCGCGGAGATGGAGTATAAATGTGAATTTTTGGTATGAA
CTGGTTGATAATCATGCAGTTG-CCTTGTTTGGTA---------TGTTTTGAATGTGTGTTACATGAAATGATGCTTATG
TTAGTCGTTGCTCTTCAGCGGCTTAGGATGTGGAAATTGCATACTCCCTCCGTTCCAAAATAGATGACTCAATTTT-ATA
CTAATTTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTAGAAGTCATCCCACTCCCC--------------
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--------------------------------------------------CCAACTATCCCTCGTTTGTCCGACAAGCTT
TTAGACACCTTGG--ACGCAATCTTATGCAACTACGGCAATATCACAAGTGGTTCAGGTACGGAGCAACAACTCCACACC
ACCCGTGTGTCGCGGCCTGCACCTGCAACGTCGATCAGTGCGTTTGATTTGCACA-CCCAAAACCCTATATAAATCTGGC
TAA------CATGCACGTAACGATG----------CACACCAGCAGCACTCCCCGG------------------------
----------------------------TCTCCTCCGCGCACGCGCCAAGATGGCCAAGGGGGCGCTCTACATCTACATG
ATGTTCGCGCTTGCACTGACGAGCTGCGCACTCGCGGGCCGCGTCCTCAACGACCATCCCGCGGCGCCTCCGGTAGAGAC
CGATCCATTGCCGGGGCCGACCGACCCGCCTGTCGACCCAGAGGTAGTGCCGGTCCCCGCGCCCACG---GCGGCGTTGC
CTTTGCCATCCAATGCCGCGGGCGCCGCTGGCGTAGCTCCGGCCGCTGGCGTTGGTGCAACGGCCAACGTAGGAGCCGG-
-----------------CGACAGCCCCCTGACGTTCTTCATGCATGACATCCTCGGCACCTCGTCGCAGACGTCGGCGCT
CATGGTGACCGGGGTGGTGGCGAGCGCCGACGGCCTGGCCAGCGGCAACAACGTCGTCCCCTACGACAGCCTCGTCCAGA
GCAACGGAAACGCCGTCAA---------------CGGCGGCTACAAGAACACCATCCCCTCCGTCAACGGTTCTGGCGGT
GGCGACACGCCCCAGACCCAGAACCTCCTCCTCGGCATGACCACCGTCGT-GGACGAGGAGCTCGCCGGGGGCCATGAGC
TCGGCGCCGCGGCCGTCGGCAGGGCGCAGGGGTTCTACGTCGCGAGCTCGCAGGACGGCAGCAGCAAGACGGTCGTGCTG
ACGGCCATGTTCGGCGGCGAAGTGCACGGCGACACGCTCAGCTTCTTCGGGGTGCACCAGTTGGCGGCGCCGGAGTCCCG
CATCGCCGTCATTGGCGGCACAGGGAAGTACGAGACCGCCAAGGGCTTCGCCGCCATCCGCACGCTGCACCCCGGCGACC
AGCACGCCGCCGACGGCGTCGAGGGCCTCCTCCAGTTCGACATTCACCTCTCCTGA-----GCTGCTTCCCTAACTAGTG
CTACCACATTCCAAGTGTTTGTCCTTCCAGGTTATATGATGCTCTGCCGTCGCGCTCAACATTTGTAATCTGAATTTCAC
GGCCTGTGCATTTTACTACCATAATACTCCTATATGTAATGCGAACTAAGTGTA------TATTTATGCATATTTTATGA
AGAAAACTAAGTATATTTGTGATGTCCTGGCCTCCT------------GGG-----------TCACATGAAATGAAATCC
TGAAAAACTTAACTGTTTGGATGAGCTTACAGAACATAAACCACACGAAAAGCAGAGTGTCATGAGCTCCTACAAACAGA
AAACAAATGGGTGCCAGGATAC------------------------------------------------TAGAATTTAA
GCAAAAAAGAAATAATAAAAAACTCTCTATTCATGTA----------------CTTTGAAAGGCTAAGGAGTTGACAAGA
ACATGATCACATGATTCTGATTTCCGAGACAAAACTTATGTATCAATGAAACTAAAATCAGGTAACGCATGTCATGTCAC
TAAAGAGTTGCATGGAAGAAGAATCCTGGGTAAGCTATCTGTAATCTATACGCCTGCAGCCGAGCTTGCCAAGGCACTAA
AGAACGCTCCGTGTGAAGTATAATACAGATCCGACTTCGGTAACTCCTGCCCCTCATTTCTCATCCAAGATGCGTTTCTG
GAAGTCCGAAACCATGCGTGGCAGGCCTTGCTTCAGAGAGACTTTTGGCTCCCAATTGAGAAGAGATTTGGCCTTTGAGA
TGTCAGGTTTTCTCATGTGCGGATCATCGGCGGTGTTGGGTTTAAATTCAACACGCGCACTTGGGTCAATTGTCTCTTTC
ACTACCTGTGGAATATAGTGCGGAAACGTTATTCCTCATAGGCAAAAAATGTAT-AAAAATATCCACTTTATGTTTAAAC
AAGAAGTGGAGGTCACTCAGTTTCGGTATCAAGGTCAGACCTGAGCAAGCTCCAAC
>SNPs
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-----------------------------------S--------S-----------------------------------
-----------------------------SS-------------------------------------------------
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---------------------------------------------S----------------------------------
S--------S--SS------------------------S--SSS----------S--S----------------------
----------------------------------------------------------------SSS------S------
---S--------------------S----------------------------------------------------SSS
SSSS---------------------------------------S------------------------------------
-----S-------SS-SSSS--SSSSSSSSS--------------S---------------------------S-S----
------S-------------------------------------------------------------------------
------------------------------S--S-S-SSSS----------S------S-------S-------------
S--------------------------------------S-------------------------S--S-SS-SSSS---
S----S-------------------------------S------------------------------------------
---S-------------------------------------------------------S--------------------
------S------------------------------S------------------------------------------
---------------------------------------------------S----------------S-----------
--------------------------------------------------------------------------S-----
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-------------------SSSSSSSSSSSSSSS---------------------------------------------S
------------------------------S-------------------S-----------------------------
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------S---------------S-----------------------------------------S---------------
---------------------------------------------------------------S----------------
----------------------SS----------------S---------------SSSSS-------------------
S-----------------------------S-------------------------S-----------------------
------------------------S-----------------------------SSSSSS--------------------
----------------------------SSSS-SSSSS-SS-SSSSSSSSSSSSSSSSSSSS------------------
--------------S--------------------------------------------S--------------------
-----------------------------------S-S------S--------------S---S---SS-----------
-----------------------------------------S--------------------------------------
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-----------------------------------SS-------------S-----------------------------
---------------S----------------------------------------
>forward_919
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-------------------CACCTGCAACAACACCACTG-----------------------------------------
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>reverse_1977
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--------------------------------------------------------GCTGAGCTGCTTCCCTAACT----
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