Multiple sequence alignment - TraesCS4D01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G194900 chr4D 100.000 3607 0 0 1 3607 337937565 337933959 0.000000e+00 6661
1 TraesCS4D01G194900 chr4D 92.393 539 38 3 3071 3607 40620076 40619539 0.000000e+00 765
2 TraesCS4D01G194900 chr4A 95.258 2446 78 19 615 3036 134207863 134210294 0.000000e+00 3840
3 TraesCS4D01G194900 chr4A 82.838 303 47 4 284 581 666202298 666201996 2.140000e-67 267
4 TraesCS4D01G194900 chr4A 82.178 303 49 4 284 581 615081296 615081598 4.620000e-64 255
5 TraesCS4D01G194900 chr4B 95.530 2282 81 14 589 2855 417139873 417137598 0.000000e+00 3629
6 TraesCS4D01G194900 chr4B 95.208 480 17 4 2854 3331 417137437 417136962 0.000000e+00 754
7 TraesCS4D01G194900 chr4B 88.293 205 21 3 5 209 417140122 417139921 3.600000e-60 243
8 TraesCS4D01G194900 chr2A 92.208 539 39 3 3068 3604 712963997 712964534 0.000000e+00 760
9 TraesCS4D01G194900 chr7D 92.022 539 40 3 3068 3604 9041912 9042449 0.000000e+00 754
10 TraesCS4D01G194900 chr5D 92.022 539 40 3 3071 3607 198230771 198230234 0.000000e+00 754
11 TraesCS4D01G194900 chr2D 91.837 539 41 3 3068 3604 584247659 584248196 0.000000e+00 749
12 TraesCS4D01G194900 chr2B 91.837 539 41 3 3071 3607 733043712 733043175 0.000000e+00 749
13 TraesCS4D01G194900 chr6A 91.466 539 43 3 3068 3604 473741367 473741904 0.000000e+00 737
14 TraesCS4D01G194900 chr6A 90.909 539 46 3 3068 3604 13606013 13606550 0.000000e+00 721
15 TraesCS4D01G194900 chr5A 83.117 308 47 5 279 581 558554508 558554815 3.550000e-70 276
16 TraesCS4D01G194900 chr3B 83.007 306 47 4 281 581 727161134 727161439 4.590000e-69 272
17 TraesCS4D01G194900 chr3A 83.168 303 46 4 284 581 700723611 700723309 4.590000e-69 272
18 TraesCS4D01G194900 chr3A 81.759 307 51 4 280 581 630764205 630763899 5.980000e-63 252
19 TraesCS4D01G194900 chr7B 82.392 301 48 4 284 579 640272188 640272488 1.280000e-64 257
20 TraesCS4D01G194900 chr1B 82.026 306 49 5 281 581 664609658 664609962 4.620000e-64 255
21 TraesCS4D01G194900 chrUn 81.672 311 50 6 276 581 379959194 379959502 5.980000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G194900 chr4D 337933959 337937565 3606 True 6661 6661 100.000000 1 3607 1 chr4D.!!$R2 3606
1 TraesCS4D01G194900 chr4D 40619539 40620076 537 True 765 765 92.393000 3071 3607 1 chr4D.!!$R1 536
2 TraesCS4D01G194900 chr4A 134207863 134210294 2431 False 3840 3840 95.258000 615 3036 1 chr4A.!!$F1 2421
3 TraesCS4D01G194900 chr4B 417136962 417140122 3160 True 1542 3629 93.010333 5 3331 3 chr4B.!!$R1 3326
4 TraesCS4D01G194900 chr2A 712963997 712964534 537 False 760 760 92.208000 3068 3604 1 chr2A.!!$F1 536
5 TraesCS4D01G194900 chr7D 9041912 9042449 537 False 754 754 92.022000 3068 3604 1 chr7D.!!$F1 536
6 TraesCS4D01G194900 chr5D 198230234 198230771 537 True 754 754 92.022000 3071 3607 1 chr5D.!!$R1 536
7 TraesCS4D01G194900 chr2D 584247659 584248196 537 False 749 749 91.837000 3068 3604 1 chr2D.!!$F1 536
8 TraesCS4D01G194900 chr2B 733043175 733043712 537 True 749 749 91.837000 3071 3607 1 chr2B.!!$R1 536
9 TraesCS4D01G194900 chr6A 473741367 473741904 537 False 737 737 91.466000 3068 3604 1 chr6A.!!$F2 536
10 TraesCS4D01G194900 chr6A 13606013 13606550 537 False 721 721 90.909000 3068 3604 1 chr6A.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 564 0.034756 ACTGTCGTGCTAACCATGCA 59.965 50.0 0.0 0.0 38.19 3.96 F
568 569 0.109781 CGTGCTAACCATGCAACCAC 60.110 55.0 0.0 0.0 42.41 4.16 F
1728 1761 0.193574 AGGAGGTGAGGAAGGTGGAA 59.806 55.0 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 1811 2.265096 AGGAACTCTTCGTCCGTCC 58.735 57.895 0.00 0.0 0.00 4.79 R
2494 2527 4.408821 AGGCGGCCATGCGAGAAA 62.409 61.111 23.09 0.0 35.06 2.52 R
2965 3160 1.347817 GCTGTCCGCTTCTTGACGAG 61.348 60.000 0.00 0.0 34.18 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 8.725606 AATCATGGGCACATACCTATTTTATT 57.274 30.769 0.00 0.00 34.99 1.40
131 132 7.523293 TCATGGGCACATACCTATTTTATTG 57.477 36.000 0.00 0.00 34.99 1.90
135 136 6.670027 TGGGCACATACCTATTTTATTGGTTT 59.330 34.615 0.00 0.00 39.17 3.27
136 137 7.839705 TGGGCACATACCTATTTTATTGGTTTA 59.160 33.333 0.00 0.00 39.17 2.01
205 206 8.947055 ACTTGTTTTCTCTATTTGTTTTGCAT 57.053 26.923 0.00 0.00 0.00 3.96
209 210 9.033481 TGTTTTCTCTATTTGTTTTGCATCAAG 57.967 29.630 0.00 0.00 0.00 3.02
210 211 9.034544 GTTTTCTCTATTTGTTTTGCATCAAGT 57.965 29.630 0.00 0.00 0.00 3.16
214 215 9.033481 TCTCTATTTGTTTTGCATCAAGTTTTG 57.967 29.630 0.00 0.00 0.00 2.44
216 217 8.816144 TCTATTTGTTTTGCATCAAGTTTTGTC 58.184 29.630 0.00 0.00 0.00 3.18
217 218 5.793026 TTGTTTTGCATCAAGTTTTGTCC 57.207 34.783 0.00 0.00 0.00 4.02
218 219 4.187694 TGTTTTGCATCAAGTTTTGTCCC 58.812 39.130 0.00 0.00 0.00 4.46
219 220 2.791383 TTGCATCAAGTTTTGTCCCG 57.209 45.000 0.00 0.00 0.00 5.14
220 221 1.686355 TGCATCAAGTTTTGTCCCGT 58.314 45.000 0.00 0.00 0.00 5.28
222 223 3.417101 TGCATCAAGTTTTGTCCCGTAT 58.583 40.909 0.00 0.00 0.00 3.06
223 224 3.190327 TGCATCAAGTTTTGTCCCGTATG 59.810 43.478 0.00 0.00 0.00 2.39
224 225 3.438781 GCATCAAGTTTTGTCCCGTATGA 59.561 43.478 0.00 0.00 0.00 2.15
225 226 4.096382 GCATCAAGTTTTGTCCCGTATGAT 59.904 41.667 0.00 0.00 0.00 2.45
227 228 5.160607 TCAAGTTTTGTCCCGTATGATCT 57.839 39.130 0.00 0.00 0.00 2.75
228 229 5.175859 TCAAGTTTTGTCCCGTATGATCTC 58.824 41.667 0.00 0.00 0.00 2.75
229 230 5.046591 TCAAGTTTTGTCCCGTATGATCTCT 60.047 40.000 0.00 0.00 0.00 3.10
230 231 5.422214 AGTTTTGTCCCGTATGATCTCTT 57.578 39.130 0.00 0.00 0.00 2.85
231 232 6.540438 AGTTTTGTCCCGTATGATCTCTTA 57.460 37.500 0.00 0.00 0.00 2.10
232 233 7.125792 AGTTTTGTCCCGTATGATCTCTTAT 57.874 36.000 0.00 0.00 0.00 1.73
233 234 8.246430 AGTTTTGTCCCGTATGATCTCTTATA 57.754 34.615 0.00 0.00 0.00 0.98
234 235 8.871125 AGTTTTGTCCCGTATGATCTCTTATAT 58.129 33.333 0.00 0.00 0.00 0.86
235 236 9.490379 GTTTTGTCCCGTATGATCTCTTATATT 57.510 33.333 0.00 0.00 0.00 1.28
236 237 9.489084 TTTTGTCCCGTATGATCTCTTATATTG 57.511 33.333 0.00 0.00 0.00 1.90
237 238 7.776618 TGTCCCGTATGATCTCTTATATTGT 57.223 36.000 0.00 0.00 0.00 2.71
238 239 7.602753 TGTCCCGTATGATCTCTTATATTGTG 58.397 38.462 0.00 0.00 0.00 3.33
239 240 7.232737 TGTCCCGTATGATCTCTTATATTGTGT 59.767 37.037 0.00 0.00 0.00 3.72
240 241 8.088981 GTCCCGTATGATCTCTTATATTGTGTT 58.911 37.037 0.00 0.00 0.00 3.32
241 242 9.304335 TCCCGTATGATCTCTTATATTGTGTTA 57.696 33.333 0.00 0.00 0.00 2.41
242 243 9.923143 CCCGTATGATCTCTTATATTGTGTTAA 57.077 33.333 0.00 0.00 0.00 2.01
256 257 5.606348 TTGTGTTAAAAGCATTTGACCCT 57.394 34.783 6.84 0.00 39.02 4.34
266 267 1.266718 CATTTGACCCTGTGACAACGG 59.733 52.381 0.00 0.00 0.00 4.44
270 271 2.357034 CCCTGTGACAACGGACGG 60.357 66.667 0.00 0.00 34.25 4.79
271 272 2.732016 CCTGTGACAACGGACGGA 59.268 61.111 0.00 0.00 34.25 4.69
278 279 3.382227 TGTGACAACGGACGGACATATAT 59.618 43.478 0.00 0.00 0.00 0.86
282 283 4.868067 ACAACGGACGGACATATATCTTC 58.132 43.478 0.00 0.00 0.00 2.87
284 285 5.068723 ACAACGGACGGACATATATCTTCTT 59.931 40.000 0.00 0.00 0.00 2.52
286 287 6.158023 ACGGACGGACATATATCTTCTTTT 57.842 37.500 0.00 0.00 0.00 2.27
288 289 7.719483 ACGGACGGACATATATCTTCTTTTTA 58.281 34.615 0.00 0.00 0.00 1.52
289 290 7.866393 ACGGACGGACATATATCTTCTTTTTAG 59.134 37.037 0.00 0.00 0.00 1.85
290 291 8.080417 CGGACGGACATATATCTTCTTTTTAGA 58.920 37.037 0.00 0.00 0.00 2.10
291 292 9.760077 GGACGGACATATATCTTCTTTTTAGAA 57.240 33.333 0.00 0.00 0.00 2.10
309 310 8.690680 TTTTAGAACACAATACAAACACAACC 57.309 30.769 0.00 0.00 0.00 3.77
310 311 5.906113 AGAACACAATACAAACACAACCA 57.094 34.783 0.00 0.00 0.00 3.67
311 312 5.646606 AGAACACAATACAAACACAACCAC 58.353 37.500 0.00 0.00 0.00 4.16
312 313 5.417580 AGAACACAATACAAACACAACCACT 59.582 36.000 0.00 0.00 0.00 4.00
313 314 5.652994 ACACAATACAAACACAACCACTT 57.347 34.783 0.00 0.00 0.00 3.16
314 315 6.761099 ACACAATACAAACACAACCACTTA 57.239 33.333 0.00 0.00 0.00 2.24
315 316 7.341445 ACACAATACAAACACAACCACTTAT 57.659 32.000 0.00 0.00 0.00 1.73
316 317 8.453238 ACACAATACAAACACAACCACTTATA 57.547 30.769 0.00 0.00 0.00 0.98
317 318 9.073475 ACACAATACAAACACAACCACTTATAT 57.927 29.630 0.00 0.00 0.00 0.86
324 325 9.309516 ACAAACACAACCACTTATATATAGACG 57.690 33.333 0.00 0.00 0.00 4.18
325 326 7.941795 AACACAACCACTTATATATAGACGC 57.058 36.000 0.00 0.00 0.00 5.19
326 327 7.046292 ACACAACCACTTATATATAGACGCA 57.954 36.000 0.00 0.00 0.00 5.24
327 328 7.667557 ACACAACCACTTATATATAGACGCAT 58.332 34.615 0.00 0.00 0.00 4.73
328 329 8.799367 ACACAACCACTTATATATAGACGCATA 58.201 33.333 0.00 0.00 0.00 3.14
329 330 9.073368 CACAACCACTTATATATAGACGCATAC 57.927 37.037 0.00 0.00 0.00 2.39
330 331 8.799367 ACAACCACTTATATATAGACGCATACA 58.201 33.333 0.00 0.00 0.00 2.29
331 332 9.073368 CAACCACTTATATATAGACGCATACAC 57.927 37.037 0.00 0.00 0.00 2.90
332 333 8.577048 ACCACTTATATATAGACGCATACACT 57.423 34.615 0.00 0.00 0.00 3.55
333 334 9.021807 ACCACTTATATATAGACGCATACACTT 57.978 33.333 0.00 0.00 0.00 3.16
343 344 8.794335 ATAGACGCATACACTTATCTCTATGA 57.206 34.615 0.00 0.00 0.00 2.15
344 345 7.511959 AGACGCATACACTTATCTCTATGAA 57.488 36.000 0.00 0.00 0.00 2.57
345 346 7.364200 AGACGCATACACTTATCTCTATGAAC 58.636 38.462 0.00 0.00 0.00 3.18
346 347 7.013369 AGACGCATACACTTATCTCTATGAACA 59.987 37.037 0.00 0.00 0.00 3.18
347 348 6.918569 ACGCATACACTTATCTCTATGAACAC 59.081 38.462 0.00 0.00 0.00 3.32
348 349 6.918022 CGCATACACTTATCTCTATGAACACA 59.082 38.462 0.00 0.00 0.00 3.72
349 350 7.096436 CGCATACACTTATCTCTATGAACACAC 60.096 40.741 0.00 0.00 0.00 3.82
350 351 7.706607 GCATACACTTATCTCTATGAACACACA 59.293 37.037 0.00 0.00 0.00 3.72
351 352 9.755804 CATACACTTATCTCTATGAACACACAT 57.244 33.333 0.00 0.00 0.00 3.21
352 353 9.755804 ATACACTTATCTCTATGAACACACATG 57.244 33.333 0.00 0.00 0.00 3.21
353 354 6.536582 ACACTTATCTCTATGAACACACATGC 59.463 38.462 0.00 0.00 0.00 4.06
354 355 6.536224 CACTTATCTCTATGAACACACATGCA 59.464 38.462 0.00 0.00 0.00 3.96
355 356 7.226128 CACTTATCTCTATGAACACACATGCAT 59.774 37.037 0.00 0.00 0.00 3.96
356 357 8.424133 ACTTATCTCTATGAACACACATGCATA 58.576 33.333 0.00 0.00 0.00 3.14
357 358 8.593492 TTATCTCTATGAACACACATGCATAC 57.407 34.615 0.00 0.00 0.00 2.39
358 359 5.359756 TCTCTATGAACACACATGCATACC 58.640 41.667 0.00 0.00 0.00 2.73
359 360 4.450976 TCTATGAACACACATGCATACCC 58.549 43.478 0.00 0.00 0.00 3.69
360 361 2.877097 TGAACACACATGCATACCCT 57.123 45.000 0.00 0.00 0.00 4.34
361 362 3.990959 TGAACACACATGCATACCCTA 57.009 42.857 0.00 0.00 0.00 3.53
362 363 3.605634 TGAACACACATGCATACCCTAC 58.394 45.455 0.00 0.00 0.00 3.18
363 364 2.710096 ACACACATGCATACCCTACC 57.290 50.000 0.00 0.00 0.00 3.18
364 365 1.211949 ACACACATGCATACCCTACCC 59.788 52.381 0.00 0.00 0.00 3.69
365 366 0.843984 ACACATGCATACCCTACCCC 59.156 55.000 0.00 0.00 0.00 4.95
366 367 0.843309 CACATGCATACCCTACCCCA 59.157 55.000 0.00 0.00 0.00 4.96
367 368 1.214175 CACATGCATACCCTACCCCAA 59.786 52.381 0.00 0.00 0.00 4.12
368 369 2.143602 ACATGCATACCCTACCCCAAT 58.856 47.619 0.00 0.00 0.00 3.16
369 370 2.158475 ACATGCATACCCTACCCCAATG 60.158 50.000 0.00 0.00 0.00 2.82
370 371 1.900254 TGCATACCCTACCCCAATGA 58.100 50.000 0.00 0.00 0.00 2.57
371 372 2.209758 TGCATACCCTACCCCAATGAA 58.790 47.619 0.00 0.00 0.00 2.57
372 373 2.092103 TGCATACCCTACCCCAATGAAC 60.092 50.000 0.00 0.00 0.00 3.18
373 374 2.092103 GCATACCCTACCCCAATGAACA 60.092 50.000 0.00 0.00 0.00 3.18
374 375 3.436470 GCATACCCTACCCCAATGAACAT 60.436 47.826 0.00 0.00 0.00 2.71
375 376 4.398319 CATACCCTACCCCAATGAACATC 58.602 47.826 0.00 0.00 0.00 3.06
376 377 2.573463 ACCCTACCCCAATGAACATCT 58.427 47.619 0.00 0.00 0.00 2.90
377 378 2.509964 ACCCTACCCCAATGAACATCTC 59.490 50.000 0.00 0.00 0.00 2.75
378 379 2.780010 CCCTACCCCAATGAACATCTCT 59.220 50.000 0.00 0.00 0.00 3.10
379 380 3.434167 CCCTACCCCAATGAACATCTCTG 60.434 52.174 0.00 0.00 0.00 3.35
380 381 3.455910 CCTACCCCAATGAACATCTCTGA 59.544 47.826 0.00 0.00 0.00 3.27
381 382 3.641434 ACCCCAATGAACATCTCTGAG 57.359 47.619 0.00 0.00 0.00 3.35
382 383 3.184628 ACCCCAATGAACATCTCTGAGA 58.815 45.455 10.23 10.23 0.00 3.27
383 384 3.199508 ACCCCAATGAACATCTCTGAGAG 59.800 47.826 13.50 2.28 0.00 3.20
384 385 3.453717 CCCCAATGAACATCTCTGAGAGA 59.546 47.826 15.42 15.42 43.20 3.10
385 386 4.440880 CCCAATGAACATCTCTGAGAGAC 58.559 47.826 15.39 2.45 41.76 3.36
386 387 4.161942 CCCAATGAACATCTCTGAGAGACT 59.838 45.833 15.39 2.12 41.76 3.24
387 388 5.110598 CCAATGAACATCTCTGAGAGACTG 58.889 45.833 15.39 15.50 41.76 3.51
388 389 5.105432 CCAATGAACATCTCTGAGAGACTGA 60.105 44.000 15.39 0.00 41.76 3.41
389 390 5.840243 ATGAACATCTCTGAGAGACTGAG 57.160 43.478 15.39 7.80 41.76 3.35
390 391 3.443329 TGAACATCTCTGAGAGACTGAGC 59.557 47.826 15.39 11.26 41.76 4.26
391 392 2.378038 ACATCTCTGAGAGACTGAGCC 58.622 52.381 15.39 0.00 41.76 4.70
392 393 1.334556 CATCTCTGAGAGACTGAGCCG 59.665 57.143 15.39 0.00 41.76 5.52
393 394 0.393673 TCTCTGAGAGACTGAGCCGG 60.394 60.000 8.34 0.00 41.99 6.13
394 395 2.003658 CTCTGAGAGACTGAGCCGGC 62.004 65.000 21.89 21.89 37.65 6.13
395 396 2.283173 TGAGAGACTGAGCCGGCA 60.283 61.111 31.54 7.98 0.00 5.69
396 397 1.674764 CTGAGAGACTGAGCCGGCAT 61.675 60.000 31.54 14.28 0.00 4.40
397 398 0.395724 TGAGAGACTGAGCCGGCATA 60.396 55.000 31.54 16.21 0.00 3.14
398 399 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
399 400 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
400 401 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
401 402 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
402 403 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
403 404 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
404 405 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
405 406 2.289320 ACTGAGCCGGCATATCATCTTC 60.289 50.000 31.54 14.56 0.00 2.87
406 407 1.693606 TGAGCCGGCATATCATCTTCA 59.306 47.619 31.54 17.27 0.00 3.02
407 408 2.289257 TGAGCCGGCATATCATCTTCAG 60.289 50.000 31.54 0.00 0.00 3.02
408 409 1.973515 AGCCGGCATATCATCTTCAGA 59.026 47.619 31.54 0.00 0.00 3.27
409 410 2.570752 AGCCGGCATATCATCTTCAGAT 59.429 45.455 31.54 0.00 34.56 2.90
410 411 3.008813 AGCCGGCATATCATCTTCAGATT 59.991 43.478 31.54 0.00 31.21 2.40
411 412 3.126514 GCCGGCATATCATCTTCAGATTG 59.873 47.826 24.80 0.00 31.21 2.67
412 413 4.572909 CCGGCATATCATCTTCAGATTGA 58.427 43.478 0.00 0.00 31.21 2.57
413 414 4.391216 CCGGCATATCATCTTCAGATTGAC 59.609 45.833 0.00 0.00 31.21 3.18
414 415 4.091075 CGGCATATCATCTTCAGATTGACG 59.909 45.833 1.13 1.13 32.82 4.35
415 416 5.233225 GGCATATCATCTTCAGATTGACGA 58.767 41.667 0.00 0.00 31.21 4.20
416 417 5.698089 GGCATATCATCTTCAGATTGACGAA 59.302 40.000 0.00 0.00 28.30 3.85
417 418 6.128607 GGCATATCATCTTCAGATTGACGAAG 60.129 42.308 0.00 0.00 40.02 3.79
418 419 6.423302 GCATATCATCTTCAGATTGACGAAGT 59.577 38.462 0.00 0.00 39.70 3.01
419 420 7.359097 GCATATCATCTTCAGATTGACGAAGTC 60.359 40.741 0.00 0.00 45.49 3.01
429 430 3.226242 ACGAAGTCACCACAGGCA 58.774 55.556 0.00 0.00 29.74 4.75
430 431 1.524961 ACGAAGTCACCACAGGCAA 59.475 52.632 0.00 0.00 29.74 4.52
431 432 0.814010 ACGAAGTCACCACAGGCAAC 60.814 55.000 0.00 0.00 29.74 4.17
432 433 1.507141 CGAAGTCACCACAGGCAACC 61.507 60.000 0.00 0.00 37.17 3.77
433 434 1.152756 AAGTCACCACAGGCAACCC 60.153 57.895 0.00 0.00 37.17 4.11
434 435 2.958578 AAGTCACCACAGGCAACCCG 62.959 60.000 0.00 0.00 35.76 5.28
435 436 3.484806 TCACCACAGGCAACCCGT 61.485 61.111 0.00 0.00 35.76 5.28
436 437 2.141448 TCACCACAGGCAACCCGTA 61.141 57.895 0.00 0.00 35.76 4.02
437 438 1.671054 CACCACAGGCAACCCGTAG 60.671 63.158 0.00 0.00 35.76 3.51
438 439 2.144738 ACCACAGGCAACCCGTAGT 61.145 57.895 0.00 0.00 35.76 2.73
439 440 1.375523 CCACAGGCAACCCGTAGTC 60.376 63.158 0.00 0.00 35.76 2.59
440 441 1.736645 CACAGGCAACCCGTAGTCG 60.737 63.158 0.00 0.00 35.76 4.18
441 442 1.904865 ACAGGCAACCCGTAGTCGA 60.905 57.895 0.00 0.00 36.71 4.20
442 443 1.445582 CAGGCAACCCGTAGTCGAC 60.446 63.158 7.70 7.70 36.71 4.20
443 444 1.904865 AGGCAACCCGTAGTCGACA 60.905 57.895 19.50 0.48 36.71 4.35
444 445 1.445582 GGCAACCCGTAGTCGACAG 60.446 63.158 19.50 8.49 39.71 3.51
445 446 1.445582 GCAACCCGTAGTCGACAGG 60.446 63.158 19.50 16.93 39.71 4.00
446 447 1.870055 GCAACCCGTAGTCGACAGGA 61.870 60.000 19.50 0.00 39.71 3.86
447 448 0.599558 CAACCCGTAGTCGACAGGAA 59.400 55.000 19.50 0.00 39.71 3.36
448 449 1.203994 CAACCCGTAGTCGACAGGAAT 59.796 52.381 19.50 6.94 39.71 3.01
449 450 0.815734 ACCCGTAGTCGACAGGAATG 59.184 55.000 19.50 7.91 39.71 2.67
450 451 0.815734 CCCGTAGTCGACAGGAATGT 59.184 55.000 19.50 0.00 39.71 2.71
451 452 1.202268 CCCGTAGTCGACAGGAATGTC 60.202 57.143 19.50 0.00 39.71 3.06
452 453 1.743958 CCGTAGTCGACAGGAATGTCT 59.256 52.381 19.50 0.00 39.71 3.41
453 454 2.223294 CCGTAGTCGACAGGAATGTCTC 60.223 54.545 19.50 0.87 39.71 3.36
454 455 2.223294 CGTAGTCGACAGGAATGTCTCC 60.223 54.545 19.50 0.00 41.25 3.71
456 457 6.258036 CGTAGTCGACAGGAATGTCTCCTC 62.258 54.167 19.50 0.00 45.93 3.71
466 467 4.425520 GGAATGTCTCCTCTCACTAAACG 58.574 47.826 0.00 0.00 41.61 3.60
467 468 4.082136 GGAATGTCTCCTCTCACTAAACGT 60.082 45.833 0.00 0.00 41.61 3.99
468 469 3.917329 TGTCTCCTCTCACTAAACGTG 57.083 47.619 0.00 0.00 45.18 4.49
469 470 2.030185 TGTCTCCTCTCACTAAACGTGC 60.030 50.000 0.00 0.00 43.46 5.34
470 471 2.030185 GTCTCCTCTCACTAAACGTGCA 60.030 50.000 0.00 0.00 43.46 4.57
471 472 2.826128 TCTCCTCTCACTAAACGTGCAT 59.174 45.455 0.00 0.00 43.46 3.96
472 473 2.926200 CTCCTCTCACTAAACGTGCATG 59.074 50.000 3.82 3.82 43.46 4.06
473 474 2.002586 CCTCTCACTAAACGTGCATGG 58.997 52.381 11.36 0.00 43.46 3.66
474 475 1.394917 CTCTCACTAAACGTGCATGGC 59.605 52.381 11.36 0.00 43.46 4.40
475 476 0.447801 CTCACTAAACGTGCATGGCC 59.552 55.000 11.36 0.00 43.46 5.36
476 477 0.250510 TCACTAAACGTGCATGGCCA 60.251 50.000 8.56 8.56 43.46 5.36
477 478 0.168788 CACTAAACGTGCATGGCCAG 59.831 55.000 13.05 4.54 36.72 4.85
478 479 0.036164 ACTAAACGTGCATGGCCAGA 59.964 50.000 13.05 0.00 0.00 3.86
479 480 0.729116 CTAAACGTGCATGGCCAGAG 59.271 55.000 13.05 7.72 0.00 3.35
480 481 0.323302 TAAACGTGCATGGCCAGAGA 59.677 50.000 13.05 0.00 0.00 3.10
481 482 0.322816 AAACGTGCATGGCCAGAGAT 60.323 50.000 13.05 0.00 0.00 2.75
482 483 0.745845 AACGTGCATGGCCAGAGATC 60.746 55.000 13.05 0.00 0.00 2.75
483 484 1.890979 CGTGCATGGCCAGAGATCC 60.891 63.158 13.05 0.00 0.00 3.36
484 485 1.530771 GTGCATGGCCAGAGATCCT 59.469 57.895 13.05 0.00 0.00 3.24
485 486 0.818445 GTGCATGGCCAGAGATCCTG 60.818 60.000 13.05 3.30 42.55 3.86
486 487 0.984432 TGCATGGCCAGAGATCCTGA 60.984 55.000 13.05 0.00 45.78 3.86
487 488 0.182061 GCATGGCCAGAGATCCTGAA 59.818 55.000 13.05 0.00 45.78 3.02
488 489 1.409241 GCATGGCCAGAGATCCTGAAA 60.409 52.381 13.05 0.00 45.78 2.69
489 490 2.752154 GCATGGCCAGAGATCCTGAAAT 60.752 50.000 13.05 0.00 45.78 2.17
490 491 3.497405 GCATGGCCAGAGATCCTGAAATA 60.497 47.826 13.05 0.00 45.78 1.40
491 492 4.722220 CATGGCCAGAGATCCTGAAATAA 58.278 43.478 13.05 0.00 45.78 1.40
492 493 4.860802 TGGCCAGAGATCCTGAAATAAA 57.139 40.909 0.00 0.00 45.78 1.40
493 494 5.393068 TGGCCAGAGATCCTGAAATAAAT 57.607 39.130 0.00 0.00 45.78 1.40
494 495 5.769835 TGGCCAGAGATCCTGAAATAAATT 58.230 37.500 0.00 0.00 45.78 1.82
495 496 5.829924 TGGCCAGAGATCCTGAAATAAATTC 59.170 40.000 0.00 0.00 45.78 2.17
496 497 5.829924 GGCCAGAGATCCTGAAATAAATTCA 59.170 40.000 0.00 0.00 45.78 2.57
513 514 9.880157 AATAAATTCAGAAATAATGCAAGCACT 57.120 25.926 0.00 0.00 0.00 4.40
515 516 8.922058 AAATTCAGAAATAATGCAAGCACTAG 57.078 30.769 0.00 0.00 0.00 2.57
516 517 6.441093 TTCAGAAATAATGCAAGCACTAGG 57.559 37.500 0.00 0.00 0.00 3.02
517 518 5.744171 TCAGAAATAATGCAAGCACTAGGA 58.256 37.500 0.00 0.00 0.00 2.94
518 519 6.359804 TCAGAAATAATGCAAGCACTAGGAT 58.640 36.000 0.00 0.00 0.00 3.24
519 520 6.830324 TCAGAAATAATGCAAGCACTAGGATT 59.170 34.615 0.00 0.00 0.00 3.01
520 521 7.340232 TCAGAAATAATGCAAGCACTAGGATTT 59.660 33.333 0.00 0.00 0.00 2.17
521 522 7.434307 CAGAAATAATGCAAGCACTAGGATTTG 59.566 37.037 0.00 0.00 0.00 2.32
522 523 7.340232 AGAAATAATGCAAGCACTAGGATTTGA 59.660 33.333 0.00 0.00 0.00 2.69
523 524 7.408756 AATAATGCAAGCACTAGGATTTGAA 57.591 32.000 0.00 0.00 0.00 2.69
524 525 4.708726 ATGCAAGCACTAGGATTTGAAC 57.291 40.909 0.00 0.00 0.00 3.18
525 526 2.819608 TGCAAGCACTAGGATTTGAACC 59.180 45.455 0.00 0.00 0.00 3.62
526 527 2.164422 GCAAGCACTAGGATTTGAACCC 59.836 50.000 0.00 0.00 0.00 4.11
527 528 3.690460 CAAGCACTAGGATTTGAACCCT 58.310 45.455 0.00 0.00 36.60 4.34
528 529 4.843728 CAAGCACTAGGATTTGAACCCTA 58.156 43.478 0.00 0.00 34.11 3.53
529 530 5.253330 CAAGCACTAGGATTTGAACCCTAA 58.747 41.667 0.00 0.00 34.86 2.69
530 531 5.717119 AGCACTAGGATTTGAACCCTAAT 57.283 39.130 0.00 0.00 34.86 1.73
531 532 5.440610 AGCACTAGGATTTGAACCCTAATG 58.559 41.667 0.00 0.00 35.88 1.90
532 533 4.580580 GCACTAGGATTTGAACCCTAATGG 59.419 45.833 0.00 0.00 34.02 3.16
556 557 2.953466 GGATACCACTGTCGTGCTAA 57.047 50.000 0.00 0.00 39.86 3.09
557 558 2.537401 GGATACCACTGTCGTGCTAAC 58.463 52.381 0.00 0.00 39.86 2.34
558 559 2.537401 GATACCACTGTCGTGCTAACC 58.463 52.381 0.00 0.00 39.86 2.85
559 560 1.330234 TACCACTGTCGTGCTAACCA 58.670 50.000 0.00 0.00 39.86 3.67
560 561 0.685097 ACCACTGTCGTGCTAACCAT 59.315 50.000 0.00 0.00 39.86 3.55
561 562 1.078709 CCACTGTCGTGCTAACCATG 58.921 55.000 0.00 0.00 39.86 3.66
562 563 0.443869 CACTGTCGTGCTAACCATGC 59.556 55.000 0.00 0.00 33.82 4.06
563 564 0.034756 ACTGTCGTGCTAACCATGCA 59.965 50.000 0.00 0.00 38.19 3.96
564 565 1.155889 CTGTCGTGCTAACCATGCAA 58.844 50.000 0.00 0.00 42.41 4.08
565 566 0.871722 TGTCGTGCTAACCATGCAAC 59.128 50.000 0.00 0.00 42.41 4.17
566 567 0.168128 GTCGTGCTAACCATGCAACC 59.832 55.000 0.00 0.00 42.41 3.77
567 568 0.250510 TCGTGCTAACCATGCAACCA 60.251 50.000 0.00 0.00 42.41 3.67
568 569 0.109781 CGTGCTAACCATGCAACCAC 60.110 55.000 0.00 0.00 42.41 4.16
569 570 0.958091 GTGCTAACCATGCAACCACA 59.042 50.000 0.00 0.00 42.41 4.17
570 571 1.545582 GTGCTAACCATGCAACCACAT 59.454 47.619 0.00 0.00 42.41 3.21
571 572 1.545136 TGCTAACCATGCAACCACATG 59.455 47.619 0.00 0.00 45.74 3.21
572 573 1.545582 GCTAACCATGCAACCACATGT 59.454 47.619 0.00 0.00 44.88 3.21
573 574 2.029110 GCTAACCATGCAACCACATGTT 60.029 45.455 0.00 2.03 44.88 2.71
590 591 2.587340 TGGTTCGCCACGGCATAT 59.413 55.556 9.11 0.00 43.56 1.78
591 592 1.823976 TGGTTCGCCACGGCATATA 59.176 52.632 9.11 0.00 43.56 0.86
592 593 0.531090 TGGTTCGCCACGGCATATAC 60.531 55.000 9.11 0.01 43.56 1.47
593 594 0.531090 GGTTCGCCACGGCATATACA 60.531 55.000 9.11 0.00 42.06 2.29
594 595 1.508632 GTTCGCCACGGCATATACAT 58.491 50.000 9.11 0.00 42.06 2.29
595 596 2.610976 GGTTCGCCACGGCATATACATA 60.611 50.000 9.11 0.00 42.06 2.29
660 665 6.540995 TGGCACTAGGGAGTAGTACTATTAG 58.459 44.000 5.75 7.97 40.27 1.73
689 694 2.529632 AGGAAGGAAATCTTGCCCAAC 58.470 47.619 0.00 0.00 43.74 3.77
1357 1375 3.615811 AGGTGGAGGAGGAGGGCA 61.616 66.667 0.00 0.00 0.00 5.36
1362 1380 2.579738 GAGGAGGAGGGCAACGAC 59.420 66.667 0.00 0.00 37.60 4.34
1368 1386 3.119096 GAGGGCAACGACTTCGCC 61.119 66.667 0.00 0.00 45.47 5.54
1468 1486 1.550130 CCCCCAAGTGGTAAGCTCGA 61.550 60.000 0.00 0.00 0.00 4.04
1477 1495 1.136110 TGGTAAGCTCGATCGATGCAA 59.864 47.619 28.66 18.99 0.00 4.08
1478 1496 2.224042 TGGTAAGCTCGATCGATGCAAT 60.224 45.455 28.66 22.04 0.00 3.56
1511 1530 7.809331 TCTCTGTCATGAATTTATTTGCACAAC 59.191 33.333 0.00 0.00 0.00 3.32
1514 1533 8.296799 TGTCATGAATTTATTTGCACAACTTC 57.703 30.769 0.00 0.00 0.00 3.01
1523 1542 8.500837 TTTATTTGCACAACTTCTACGAAATG 57.499 30.769 0.00 0.00 0.00 2.32
1573 1602 5.980715 GGAAATTTCTGCCGTTTTGTCTAAA 59.019 36.000 17.42 0.00 0.00 1.85
1728 1761 0.193574 AGGAGGTGAGGAAGGTGGAA 59.806 55.000 0.00 0.00 0.00 3.53
1778 1811 4.154918 GGCTGTGAAGAAATGTTACCTGAG 59.845 45.833 0.00 0.00 0.00 3.35
1845 1878 0.953727 GTGTCACTGCATTGCTCCAA 59.046 50.000 10.49 0.00 0.00 3.53
2043 2076 6.545666 TGACAATTGTAGTTTGAAGGATGTGT 59.454 34.615 11.95 0.00 0.00 3.72
2125 2158 9.959721 ATACAGTTAGTGGATAATTCTTGTTGT 57.040 29.630 0.00 0.00 0.00 3.32
2494 2527 2.183409 GCATCGGCAATGACAAGGT 58.817 52.632 2.71 0.00 40.72 3.50
2763 2796 2.726066 GCAAGCATTCGACTCTTTTCGG 60.726 50.000 0.00 0.00 39.58 4.30
2907 3102 3.956199 ACTGGGTAAATGGATTCAGCATG 59.044 43.478 0.00 0.00 37.54 4.06
2965 3160 7.978982 ACTCTTGAAGTGCATGTGATTTATAC 58.021 34.615 0.00 0.00 36.65 1.47
2978 3173 5.515270 TGTGATTTATACTCGTCAAGAAGCG 59.485 40.000 0.00 0.00 0.00 4.68
3082 3278 1.740025 GAGGAATTTCAGTTCTGCCCG 59.260 52.381 0.00 0.00 0.00 6.13
3122 3319 5.677319 ATTCCTCTAACCGAATGACTGAA 57.323 39.130 0.00 0.00 0.00 3.02
3152 3349 1.627864 ACAAAATGGAGGAAACCGGG 58.372 50.000 6.32 0.00 0.00 5.73
3256 3453 5.606505 ACAACAAGGGAAATTTTATTGCGT 58.393 33.333 9.56 6.11 0.00 5.24
3258 3455 4.816392 ACAAGGGAAATTTTATTGCGTCC 58.184 39.130 9.56 0.00 0.00 4.79
3333 3530 6.730507 TGGCCATGAGAGATGGATTACTATTA 59.269 38.462 0.00 0.00 41.64 0.98
3417 3615 4.838423 TCTACTCTGGACAAACAAGATGGA 59.162 41.667 0.00 0.00 0.00 3.41
3424 3622 3.019564 GACAAACAAGATGGAGGGATGG 58.980 50.000 0.00 0.00 0.00 3.51
3426 3624 3.075882 ACAAACAAGATGGAGGGATGGAA 59.924 43.478 0.00 0.00 0.00 3.53
3443 3641 1.821136 GGAACTGCAGCCTTATTTGCT 59.179 47.619 15.27 0.00 40.87 3.91
3450 3648 2.857592 AGCCTTATTTGCTGAATGCG 57.142 45.000 0.00 0.00 46.63 4.73
3481 3679 5.104527 TCGGTTCATCTATTGGAAAGGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
3486 3684 7.870509 TCATCTATTGGAAAGGTCATCTTTG 57.129 36.000 0.00 0.00 45.00 2.77
3514 3712 7.007725 GCATTGCTTACGATCATGTAATAATGC 59.992 37.037 22.10 22.10 34.07 3.56
3543 3741 7.063898 CGCATGTGCTAGCTAATCATAGTTATT 59.936 37.037 17.23 0.00 39.32 1.40
3590 3788 1.407979 GACGAGCCTCCCGATTTCTTA 59.592 52.381 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.702253 TCTACTTTATTGGGTTGCCAAATATAA 57.298 29.630 0.00 0.00 33.20 0.98
99 100 6.702449 AGGTATGTGCCCATGATTTATCTA 57.298 37.500 0.00 0.00 32.29 1.98
178 179 9.213799 TGCAAAACAAATAGAGAAAACAAGTTT 57.786 25.926 0.00 0.00 0.00 2.66
180 181 8.947055 ATGCAAAACAAATAGAGAAAACAAGT 57.053 26.923 0.00 0.00 0.00 3.16
181 182 9.033481 TGATGCAAAACAAATAGAGAAAACAAG 57.967 29.630 0.00 0.00 0.00 3.16
184 185 9.034544 ACTTGATGCAAAACAAATAGAGAAAAC 57.965 29.630 0.00 0.00 0.00 2.43
189 190 8.819974 ACAAAACTTGATGCAAAACAAATAGAG 58.180 29.630 0.00 0.00 0.00 2.43
197 198 3.245048 CGGGACAAAACTTGATGCAAAAC 59.755 43.478 0.00 0.00 0.00 2.43
198 199 3.118956 ACGGGACAAAACTTGATGCAAAA 60.119 39.130 0.00 0.00 0.00 2.44
205 206 5.046591 AGAGATCATACGGGACAAAACTTGA 60.047 40.000 0.00 0.00 0.00 3.02
209 210 9.490379 AATATAAGAGATCATACGGGACAAAAC 57.510 33.333 0.00 0.00 0.00 2.43
210 211 9.489084 CAATATAAGAGATCATACGGGACAAAA 57.511 33.333 0.00 0.00 0.00 2.44
214 215 7.603651 ACACAATATAAGAGATCATACGGGAC 58.396 38.462 0.00 0.00 0.00 4.46
216 217 9.923143 TTAACACAATATAAGAGATCATACGGG 57.077 33.333 0.00 0.00 0.00 5.28
229 230 9.646427 GGGTCAAATGCTTTTAACACAATATAA 57.354 29.630 1.21 0.00 0.00 0.98
230 231 9.030452 AGGGTCAAATGCTTTTAACACAATATA 57.970 29.630 3.64 0.00 0.00 0.86
231 232 7.818930 CAGGGTCAAATGCTTTTAACACAATAT 59.181 33.333 3.64 0.00 0.00 1.28
232 233 7.151308 CAGGGTCAAATGCTTTTAACACAATA 58.849 34.615 3.64 0.00 0.00 1.90
233 234 5.990996 CAGGGTCAAATGCTTTTAACACAAT 59.009 36.000 3.64 0.00 0.00 2.71
234 235 5.105146 ACAGGGTCAAATGCTTTTAACACAA 60.105 36.000 3.64 0.00 0.00 3.33
235 236 4.404073 ACAGGGTCAAATGCTTTTAACACA 59.596 37.500 3.64 0.00 0.00 3.72
236 237 4.744631 CACAGGGTCAAATGCTTTTAACAC 59.255 41.667 1.21 0.00 0.00 3.32
237 238 4.646945 TCACAGGGTCAAATGCTTTTAACA 59.353 37.500 1.21 0.00 0.00 2.41
238 239 4.982295 GTCACAGGGTCAAATGCTTTTAAC 59.018 41.667 0.00 0.00 0.00 2.01
239 240 4.646945 TGTCACAGGGTCAAATGCTTTTAA 59.353 37.500 0.00 0.00 0.00 1.52
240 241 4.211125 TGTCACAGGGTCAAATGCTTTTA 58.789 39.130 0.00 0.00 0.00 1.52
241 242 3.030291 TGTCACAGGGTCAAATGCTTTT 58.970 40.909 0.00 0.00 0.00 2.27
242 243 2.665165 TGTCACAGGGTCAAATGCTTT 58.335 42.857 0.00 0.00 0.00 3.51
243 244 2.362077 GTTGTCACAGGGTCAAATGCTT 59.638 45.455 0.00 0.00 0.00 3.91
244 245 1.956477 GTTGTCACAGGGTCAAATGCT 59.044 47.619 0.00 0.00 0.00 3.79
245 246 1.334960 CGTTGTCACAGGGTCAAATGC 60.335 52.381 0.00 0.00 0.00 3.56
246 247 1.266718 CCGTTGTCACAGGGTCAAATG 59.733 52.381 0.00 0.00 0.00 2.32
247 248 1.142060 TCCGTTGTCACAGGGTCAAAT 59.858 47.619 0.00 0.00 0.00 2.32
248 249 0.542333 TCCGTTGTCACAGGGTCAAA 59.458 50.000 0.00 0.00 0.00 2.69
249 250 0.179067 GTCCGTTGTCACAGGGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
250 251 1.444250 GTCCGTTGTCACAGGGTCA 59.556 57.895 0.00 0.00 0.00 4.02
251 252 1.663702 CGTCCGTTGTCACAGGGTC 60.664 63.158 0.00 0.00 0.00 4.46
252 253 2.420043 CGTCCGTTGTCACAGGGT 59.580 61.111 0.00 0.00 0.00 4.34
256 257 0.960286 TATGTCCGTCCGTTGTCACA 59.040 50.000 0.00 0.00 0.00 3.58
284 285 8.304596 TGGTTGTGTTTGTATTGTGTTCTAAAA 58.695 29.630 0.00 0.00 0.00 1.52
286 287 7.121463 AGTGGTTGTGTTTGTATTGTGTTCTAA 59.879 33.333 0.00 0.00 0.00 2.10
288 289 5.417580 AGTGGTTGTGTTTGTATTGTGTTCT 59.582 36.000 0.00 0.00 0.00 3.01
289 290 5.646606 AGTGGTTGTGTTTGTATTGTGTTC 58.353 37.500 0.00 0.00 0.00 3.18
290 291 5.652994 AGTGGTTGTGTTTGTATTGTGTT 57.347 34.783 0.00 0.00 0.00 3.32
291 292 5.652994 AAGTGGTTGTGTTTGTATTGTGT 57.347 34.783 0.00 0.00 0.00 3.72
298 299 9.309516 CGTCTATATATAAGTGGTTGTGTTTGT 57.690 33.333 0.00 0.00 0.00 2.83
299 300 8.273557 GCGTCTATATATAAGTGGTTGTGTTTG 58.726 37.037 0.00 0.00 0.00 2.93
300 301 7.982919 TGCGTCTATATATAAGTGGTTGTGTTT 59.017 33.333 0.00 0.00 0.00 2.83
301 302 7.494211 TGCGTCTATATATAAGTGGTTGTGTT 58.506 34.615 0.00 0.00 0.00 3.32
302 303 7.046292 TGCGTCTATATATAAGTGGTTGTGT 57.954 36.000 0.00 0.00 0.00 3.72
303 304 9.073368 GTATGCGTCTATATATAAGTGGTTGTG 57.927 37.037 0.00 0.00 0.00 3.33
304 305 8.799367 TGTATGCGTCTATATATAAGTGGTTGT 58.201 33.333 0.00 0.00 0.00 3.32
305 306 9.073368 GTGTATGCGTCTATATATAAGTGGTTG 57.927 37.037 0.00 0.00 0.00 3.77
306 307 9.021807 AGTGTATGCGTCTATATATAAGTGGTT 57.978 33.333 0.00 0.00 0.00 3.67
307 308 8.577048 AGTGTATGCGTCTATATATAAGTGGT 57.423 34.615 0.00 0.00 0.00 4.16
317 318 9.886132 TCATAGAGATAAGTGTATGCGTCTATA 57.114 33.333 0.00 0.00 0.00 1.31
318 319 8.794335 TCATAGAGATAAGTGTATGCGTCTAT 57.206 34.615 0.00 0.00 0.00 1.98
319 320 8.504815 GTTCATAGAGATAAGTGTATGCGTCTA 58.495 37.037 0.00 0.00 0.00 2.59
320 321 7.013369 TGTTCATAGAGATAAGTGTATGCGTCT 59.987 37.037 0.00 0.00 0.00 4.18
321 322 7.113684 GTGTTCATAGAGATAAGTGTATGCGTC 59.886 40.741 0.00 0.00 0.00 5.19
322 323 6.918569 GTGTTCATAGAGATAAGTGTATGCGT 59.081 38.462 0.00 0.00 0.00 5.24
323 324 6.918022 TGTGTTCATAGAGATAAGTGTATGCG 59.082 38.462 0.00 0.00 0.00 4.73
324 325 7.706607 TGTGTGTTCATAGAGATAAGTGTATGC 59.293 37.037 0.00 0.00 0.00 3.14
325 326 9.755804 ATGTGTGTTCATAGAGATAAGTGTATG 57.244 33.333 0.00 0.00 0.00 2.39
326 327 9.755804 CATGTGTGTTCATAGAGATAAGTGTAT 57.244 33.333 0.00 0.00 0.00 2.29
327 328 7.706607 GCATGTGTGTTCATAGAGATAAGTGTA 59.293 37.037 0.00 0.00 0.00 2.90
328 329 6.536582 GCATGTGTGTTCATAGAGATAAGTGT 59.463 38.462 0.00 0.00 0.00 3.55
329 330 6.536224 TGCATGTGTGTTCATAGAGATAAGTG 59.464 38.462 0.00 0.00 0.00 3.16
330 331 6.643388 TGCATGTGTGTTCATAGAGATAAGT 58.357 36.000 0.00 0.00 0.00 2.24
331 332 7.725818 ATGCATGTGTGTTCATAGAGATAAG 57.274 36.000 0.00 0.00 0.00 1.73
332 333 7.657354 GGTATGCATGTGTGTTCATAGAGATAA 59.343 37.037 10.16 0.00 0.00 1.75
333 334 7.154656 GGTATGCATGTGTGTTCATAGAGATA 58.845 38.462 10.16 0.00 0.00 1.98
334 335 5.994054 GGTATGCATGTGTGTTCATAGAGAT 59.006 40.000 10.16 0.00 0.00 2.75
335 336 5.359756 GGTATGCATGTGTGTTCATAGAGA 58.640 41.667 10.16 0.00 0.00 3.10
336 337 4.512944 GGGTATGCATGTGTGTTCATAGAG 59.487 45.833 10.16 0.00 0.00 2.43
337 338 4.164030 AGGGTATGCATGTGTGTTCATAGA 59.836 41.667 10.16 0.00 0.00 1.98
338 339 4.454678 AGGGTATGCATGTGTGTTCATAG 58.545 43.478 10.16 0.00 0.00 2.23
339 340 4.502105 AGGGTATGCATGTGTGTTCATA 57.498 40.909 10.16 0.00 0.00 2.15
340 341 3.370840 AGGGTATGCATGTGTGTTCAT 57.629 42.857 10.16 0.00 0.00 2.57
341 342 2.877097 AGGGTATGCATGTGTGTTCA 57.123 45.000 10.16 0.00 0.00 3.18
342 343 2.943033 GGTAGGGTATGCATGTGTGTTC 59.057 50.000 10.16 0.00 0.00 3.18
343 344 2.356741 GGGTAGGGTATGCATGTGTGTT 60.357 50.000 10.16 0.00 0.00 3.32
344 345 1.211949 GGGTAGGGTATGCATGTGTGT 59.788 52.381 10.16 0.00 0.00 3.72
345 346 1.476833 GGGGTAGGGTATGCATGTGTG 60.477 57.143 10.16 0.00 0.00 3.82
346 347 0.843984 GGGGTAGGGTATGCATGTGT 59.156 55.000 10.16 0.00 0.00 3.72
347 348 0.843309 TGGGGTAGGGTATGCATGTG 59.157 55.000 10.16 0.00 0.00 3.21
348 349 1.602440 TTGGGGTAGGGTATGCATGT 58.398 50.000 10.16 0.00 0.00 3.21
349 350 2.108075 TCATTGGGGTAGGGTATGCATG 59.892 50.000 10.16 0.00 0.00 4.06
350 351 2.427872 TCATTGGGGTAGGGTATGCAT 58.572 47.619 3.79 3.79 0.00 3.96
351 352 1.900254 TCATTGGGGTAGGGTATGCA 58.100 50.000 0.00 0.00 0.00 3.96
352 353 2.092103 TGTTCATTGGGGTAGGGTATGC 60.092 50.000 0.00 0.00 0.00 3.14
353 354 3.943671 TGTTCATTGGGGTAGGGTATG 57.056 47.619 0.00 0.00 0.00 2.39
354 355 4.315993 AGATGTTCATTGGGGTAGGGTAT 58.684 43.478 0.00 0.00 0.00 2.73
355 356 3.714798 GAGATGTTCATTGGGGTAGGGTA 59.285 47.826 0.00 0.00 0.00 3.69
356 357 2.509964 GAGATGTTCATTGGGGTAGGGT 59.490 50.000 0.00 0.00 0.00 4.34
357 358 2.780010 AGAGATGTTCATTGGGGTAGGG 59.220 50.000 0.00 0.00 0.00 3.53
358 359 3.455910 TCAGAGATGTTCATTGGGGTAGG 59.544 47.826 0.00 0.00 0.00 3.18
359 360 4.406972 TCTCAGAGATGTTCATTGGGGTAG 59.593 45.833 0.00 0.00 0.00 3.18
360 361 4.361783 TCTCAGAGATGTTCATTGGGGTA 58.638 43.478 0.00 0.00 0.00 3.69
361 362 3.184628 TCTCAGAGATGTTCATTGGGGT 58.815 45.455 0.00 0.00 0.00 4.95
362 363 3.453717 TCTCTCAGAGATGTTCATTGGGG 59.546 47.826 0.00 0.00 33.35 4.96
363 364 4.161942 AGTCTCTCAGAGATGTTCATTGGG 59.838 45.833 7.89 0.00 40.98 4.12
364 365 5.105432 TCAGTCTCTCAGAGATGTTCATTGG 60.105 44.000 7.89 0.00 40.98 3.16
365 366 5.963594 TCAGTCTCTCAGAGATGTTCATTG 58.036 41.667 7.89 0.00 40.98 2.82
366 367 5.394443 GCTCAGTCTCTCAGAGATGTTCATT 60.394 44.000 7.89 0.00 40.98 2.57
367 368 4.098349 GCTCAGTCTCTCAGAGATGTTCAT 59.902 45.833 7.89 0.00 40.98 2.57
368 369 3.443329 GCTCAGTCTCTCAGAGATGTTCA 59.557 47.826 7.89 0.00 40.98 3.18
369 370 3.181487 GGCTCAGTCTCTCAGAGATGTTC 60.181 52.174 7.89 0.00 40.98 3.18
370 371 2.760092 GGCTCAGTCTCTCAGAGATGTT 59.240 50.000 7.89 0.00 40.98 2.71
371 372 2.378038 GGCTCAGTCTCTCAGAGATGT 58.622 52.381 7.89 0.00 40.98 3.06
372 373 1.334556 CGGCTCAGTCTCTCAGAGATG 59.665 57.143 7.89 7.62 40.98 2.90
373 374 1.679139 CGGCTCAGTCTCTCAGAGAT 58.321 55.000 7.89 0.00 40.98 2.75
374 375 0.393673 CCGGCTCAGTCTCTCAGAGA 60.394 60.000 0.00 0.00 36.22 3.10
375 376 2.003658 GCCGGCTCAGTCTCTCAGAG 62.004 65.000 22.15 0.00 33.62 3.35
376 377 2.049185 GCCGGCTCAGTCTCTCAGA 61.049 63.158 22.15 0.00 0.00 3.27
377 378 1.674764 ATGCCGGCTCAGTCTCTCAG 61.675 60.000 29.70 0.00 0.00 3.35
378 379 0.395724 TATGCCGGCTCAGTCTCTCA 60.396 55.000 29.70 2.45 0.00 3.27
379 380 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
380 381 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
381 382 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
382 383 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
383 384 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
384 385 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
385 386 2.289257 TGAAGATGATATGCCGGCTCAG 60.289 50.000 29.70 0.00 0.00 3.35
386 387 1.693606 TGAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
387 388 2.028658 TCTGAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
388 389 1.973515 TCTGAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
389 390 2.462456 TCTGAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
390 391 4.391216 GTCAATCTGAAGATGATATGCCGG 59.609 45.833 0.00 0.00 34.49 6.13
391 392 4.091075 CGTCAATCTGAAGATGATATGCCG 59.909 45.833 0.00 0.00 34.49 5.69
392 393 5.233225 TCGTCAATCTGAAGATGATATGCC 58.767 41.667 0.00 0.00 34.49 4.40
393 394 6.423302 ACTTCGTCAATCTGAAGATGATATGC 59.577 38.462 8.79 0.00 43.34 3.14
394 395 7.650903 TGACTTCGTCAATCTGAAGATGATATG 59.349 37.037 8.79 0.00 43.34 1.78
395 396 7.651304 GTGACTTCGTCAATCTGAAGATGATAT 59.349 37.037 8.79 0.15 44.49 1.63
396 397 6.975197 GTGACTTCGTCAATCTGAAGATGATA 59.025 38.462 8.79 0.39 44.49 2.15
397 398 5.809562 GTGACTTCGTCAATCTGAAGATGAT 59.190 40.000 8.79 0.00 44.49 2.45
398 399 5.164233 GTGACTTCGTCAATCTGAAGATGA 58.836 41.667 8.79 2.42 44.49 2.92
399 400 4.328440 GGTGACTTCGTCAATCTGAAGATG 59.672 45.833 8.79 3.57 44.49 2.90
400 401 4.021104 TGGTGACTTCGTCAATCTGAAGAT 60.021 41.667 8.79 0.00 44.49 2.40
401 402 3.320826 TGGTGACTTCGTCAATCTGAAGA 59.679 43.478 8.79 0.00 44.49 2.87
402 403 3.430218 GTGGTGACTTCGTCAATCTGAAG 59.570 47.826 0.00 0.71 44.49 3.02
403 404 3.181470 TGTGGTGACTTCGTCAATCTGAA 60.181 43.478 0.00 0.00 44.49 3.02
404 405 2.364002 TGTGGTGACTTCGTCAATCTGA 59.636 45.455 0.00 0.00 44.49 3.27
405 406 2.733552 CTGTGGTGACTTCGTCAATCTG 59.266 50.000 0.00 0.00 44.49 2.90
406 407 2.289072 CCTGTGGTGACTTCGTCAATCT 60.289 50.000 0.00 0.00 44.49 2.40
407 408 2.069273 CCTGTGGTGACTTCGTCAATC 58.931 52.381 0.00 0.00 44.49 2.67
408 409 1.878102 GCCTGTGGTGACTTCGTCAAT 60.878 52.381 0.00 0.00 44.49 2.57
409 410 0.531974 GCCTGTGGTGACTTCGTCAA 60.532 55.000 0.00 0.00 44.49 3.18
410 411 1.069090 GCCTGTGGTGACTTCGTCA 59.931 57.895 0.00 0.00 40.50 4.35
411 412 0.531974 TTGCCTGTGGTGACTTCGTC 60.532 55.000 0.00 0.00 0.00 4.20
412 413 0.814010 GTTGCCTGTGGTGACTTCGT 60.814 55.000 0.00 0.00 0.00 3.85
413 414 1.507141 GGTTGCCTGTGGTGACTTCG 61.507 60.000 0.00 0.00 0.00 3.79
414 415 1.172812 GGGTTGCCTGTGGTGACTTC 61.173 60.000 0.00 0.00 0.00 3.01
415 416 1.152756 GGGTTGCCTGTGGTGACTT 60.153 57.895 0.00 0.00 0.00 3.01
416 417 2.515901 GGGTTGCCTGTGGTGACT 59.484 61.111 0.00 0.00 0.00 3.41
417 418 2.386064 TACGGGTTGCCTGTGGTGAC 62.386 60.000 9.71 0.00 43.80 3.67
418 419 2.107041 CTACGGGTTGCCTGTGGTGA 62.107 60.000 9.71 0.00 43.80 4.02
419 420 1.671054 CTACGGGTTGCCTGTGGTG 60.671 63.158 9.71 0.00 43.80 4.17
420 421 2.747686 CTACGGGTTGCCTGTGGT 59.252 61.111 9.71 0.00 43.80 4.16
421 422 1.375523 GACTACGGGTTGCCTGTGG 60.376 63.158 9.71 9.15 43.80 4.17
422 423 1.736645 CGACTACGGGTTGCCTGTG 60.737 63.158 9.71 3.20 43.80 3.66
423 424 1.904865 TCGACTACGGGTTGCCTGT 60.905 57.895 4.92 4.92 46.08 4.00
424 425 1.445582 GTCGACTACGGGTTGCCTG 60.446 63.158 8.70 0.00 40.21 4.85
425 426 1.874345 CTGTCGACTACGGGTTGCCT 61.874 60.000 17.92 0.00 40.21 4.75
426 427 1.445582 CTGTCGACTACGGGTTGCC 60.446 63.158 17.92 0.00 40.21 4.52
427 428 4.164252 CTGTCGACTACGGGTTGC 57.836 61.111 17.92 0.00 40.21 4.17
432 433 2.190325 GACATTCCTGTCGACTACGG 57.810 55.000 17.92 14.08 42.24 4.02
445 446 5.061920 ACGTTTAGTGAGAGGAGACATTC 57.938 43.478 0.00 0.00 0.00 2.67
459 460 0.036164 TCTGGCCATGCACGTTTAGT 59.964 50.000 5.51 0.00 0.00 2.24
460 461 0.729116 CTCTGGCCATGCACGTTTAG 59.271 55.000 5.51 0.00 0.00 1.85
461 462 0.323302 TCTCTGGCCATGCACGTTTA 59.677 50.000 5.51 0.00 0.00 2.01
462 463 0.322816 ATCTCTGGCCATGCACGTTT 60.323 50.000 5.51 0.00 0.00 3.60
463 464 0.745845 GATCTCTGGCCATGCACGTT 60.746 55.000 5.51 0.00 0.00 3.99
464 465 1.153289 GATCTCTGGCCATGCACGT 60.153 57.895 5.51 0.00 0.00 4.49
465 466 1.890979 GGATCTCTGGCCATGCACG 60.891 63.158 5.51 0.00 0.00 5.34
466 467 0.818445 CAGGATCTCTGGCCATGCAC 60.818 60.000 5.51 0.00 39.76 4.57
467 468 0.984432 TCAGGATCTCTGGCCATGCA 60.984 55.000 5.51 0.00 43.53 3.96
468 469 0.182061 TTCAGGATCTCTGGCCATGC 59.818 55.000 5.51 0.00 43.53 4.06
469 470 2.723322 TTTCAGGATCTCTGGCCATG 57.277 50.000 5.51 2.03 43.53 3.66
470 471 5.393068 TTTATTTCAGGATCTCTGGCCAT 57.607 39.130 5.51 0.00 43.53 4.40
471 472 4.860802 TTTATTTCAGGATCTCTGGCCA 57.139 40.909 4.71 4.71 43.53 5.36
472 473 5.829924 TGAATTTATTTCAGGATCTCTGGCC 59.170 40.000 0.00 0.00 43.53 5.36
473 474 6.949352 TGAATTTATTTCAGGATCTCTGGC 57.051 37.500 10.23 0.00 43.53 4.85
487 488 9.880157 AGTGCTTGCATTATTTCTGAATTTATT 57.120 25.926 0.00 0.00 0.00 1.40
490 491 7.977853 CCTAGTGCTTGCATTATTTCTGAATTT 59.022 33.333 0.00 0.00 0.00 1.82
491 492 7.340232 TCCTAGTGCTTGCATTATTTCTGAATT 59.660 33.333 0.00 0.00 0.00 2.17
492 493 6.830324 TCCTAGTGCTTGCATTATTTCTGAAT 59.170 34.615 0.00 0.00 0.00 2.57
493 494 6.179756 TCCTAGTGCTTGCATTATTTCTGAA 58.820 36.000 0.00 0.00 0.00 3.02
494 495 5.744171 TCCTAGTGCTTGCATTATTTCTGA 58.256 37.500 0.00 0.00 0.00 3.27
495 496 6.630444 ATCCTAGTGCTTGCATTATTTCTG 57.370 37.500 0.00 0.00 0.00 3.02
496 497 7.340232 TCAAATCCTAGTGCTTGCATTATTTCT 59.660 33.333 0.00 0.00 0.00 2.52
497 498 7.483307 TCAAATCCTAGTGCTTGCATTATTTC 58.517 34.615 0.00 0.00 0.00 2.17
498 499 7.408756 TCAAATCCTAGTGCTTGCATTATTT 57.591 32.000 0.00 0.00 0.00 1.40
499 500 7.260603 GTTCAAATCCTAGTGCTTGCATTATT 58.739 34.615 0.00 0.00 0.00 1.40
500 501 6.183360 GGTTCAAATCCTAGTGCTTGCATTAT 60.183 38.462 0.00 0.00 0.00 1.28
501 502 5.125417 GGTTCAAATCCTAGTGCTTGCATTA 59.875 40.000 0.00 0.00 0.00 1.90
502 503 4.082026 GGTTCAAATCCTAGTGCTTGCATT 60.082 41.667 0.00 0.00 0.00 3.56
503 504 3.445096 GGTTCAAATCCTAGTGCTTGCAT 59.555 43.478 0.00 0.00 0.00 3.96
504 505 2.819608 GGTTCAAATCCTAGTGCTTGCA 59.180 45.455 0.00 0.00 0.00 4.08
505 506 2.164422 GGGTTCAAATCCTAGTGCTTGC 59.836 50.000 0.00 0.00 0.00 4.01
506 507 3.690460 AGGGTTCAAATCCTAGTGCTTG 58.310 45.455 0.00 0.00 37.89 4.01
507 508 5.514500 TTAGGGTTCAAATCCTAGTGCTT 57.486 39.130 2.18 0.00 42.49 3.91
508 509 5.440610 CATTAGGGTTCAAATCCTAGTGCT 58.559 41.667 10.54 0.00 42.49 4.40
509 510 4.580580 CCATTAGGGTTCAAATCCTAGTGC 59.419 45.833 15.58 0.00 44.04 4.40
525 526 1.073923 GTGGTATCCCAGCCCATTAGG 59.926 57.143 0.00 0.00 42.94 2.69
526 527 2.057922 AGTGGTATCCCAGCCCATTAG 58.942 52.381 0.00 0.00 42.94 1.73
527 528 1.774254 CAGTGGTATCCCAGCCCATTA 59.226 52.381 0.00 0.00 42.94 1.90
528 529 0.552848 CAGTGGTATCCCAGCCCATT 59.447 55.000 0.00 0.00 42.94 3.16
529 530 0.624500 ACAGTGGTATCCCAGCCCAT 60.625 55.000 0.00 0.00 42.94 4.00
530 531 1.229820 ACAGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
531 532 1.527370 GACAGTGGTATCCCAGCCC 59.473 63.158 0.00 0.00 42.94 5.19
532 533 1.144057 CGACAGTGGTATCCCAGCC 59.856 63.158 0.00 0.00 42.94 4.85
533 534 0.460284 CACGACAGTGGTATCCCAGC 60.460 60.000 0.00 0.00 42.94 4.85
534 535 3.741029 CACGACAGTGGTATCCCAG 57.259 57.895 0.00 0.00 42.94 4.45
544 545 0.034756 TGCATGGTTAGCACGACAGT 59.965 50.000 0.00 0.00 37.02 3.55
545 546 1.135972 GTTGCATGGTTAGCACGACAG 60.136 52.381 0.00 0.00 42.54 3.51
546 547 0.871722 GTTGCATGGTTAGCACGACA 59.128 50.000 0.00 0.00 42.54 4.35
547 548 0.168128 GGTTGCATGGTTAGCACGAC 59.832 55.000 0.00 0.00 42.54 4.34
548 549 0.250510 TGGTTGCATGGTTAGCACGA 60.251 50.000 0.00 0.00 42.54 4.35
549 550 0.109781 GTGGTTGCATGGTTAGCACG 60.110 55.000 2.23 0.00 42.54 5.34
550 551 0.958091 TGTGGTTGCATGGTTAGCAC 59.042 50.000 10.06 10.06 42.54 4.40
551 552 1.545136 CATGTGGTTGCATGGTTAGCA 59.455 47.619 0.00 0.00 41.70 3.49
552 553 2.029110 AACATGTGGTTGCATGGTTAGC 60.029 45.455 0.00 0.00 43.56 3.09
553 554 3.940209 AACATGTGGTTGCATGGTTAG 57.060 42.857 0.00 0.00 43.56 2.34
573 574 0.531090 GTATATGCCGTGGCGAACCA 60.531 55.000 6.37 0.00 46.51 3.67
574 575 0.531090 TGTATATGCCGTGGCGAACC 60.531 55.000 6.37 0.00 45.51 3.62
575 576 1.508632 ATGTATATGCCGTGGCGAAC 58.491 50.000 6.37 2.44 45.51 3.95
576 577 3.388345 TTATGTATATGCCGTGGCGAA 57.612 42.857 6.37 0.00 45.51 4.70
577 578 3.603158 ATTATGTATATGCCGTGGCGA 57.397 42.857 6.37 0.00 45.51 5.54
578 579 4.177783 TGTATTATGTATATGCCGTGGCG 58.822 43.478 6.37 0.00 45.51 5.69
579 580 5.642063 AGTTGTATTATGTATATGCCGTGGC 59.358 40.000 3.30 3.30 42.35 5.01
580 581 8.766000 TTAGTTGTATTATGTATATGCCGTGG 57.234 34.615 0.00 0.00 0.00 4.94
610 611 7.484035 AGTGAATCGTGAAATATTTCTAGCC 57.516 36.000 24.77 11.76 38.02 3.93
617 618 6.767902 AGTGCCATAGTGAATCGTGAAATATT 59.232 34.615 0.00 0.00 0.00 1.28
619 620 5.670485 AGTGCCATAGTGAATCGTGAAATA 58.330 37.500 0.00 0.00 0.00 1.40
660 665 5.923114 GCAAGATTTCCTTCCTTGAAGAAAC 59.077 40.000 5.43 0.00 41.71 2.78
704 710 1.512926 CGCTGGCACAAGTAGAAAGT 58.487 50.000 0.00 0.00 38.70 2.66
705 711 0.798776 CCGCTGGCACAAGTAGAAAG 59.201 55.000 0.00 0.00 38.70 2.62
766 772 1.342074 TGTGAACTGGACTGGAGGAG 58.658 55.000 0.00 0.00 0.00 3.69
1468 1486 5.426504 ACAGAGAAGAGAAATTGCATCGAT 58.573 37.500 0.00 0.00 0.00 3.59
1501 1519 6.072112 ACATTTCGTAGAAGTTGTGCAAAT 57.928 33.333 0.00 0.00 45.90 2.32
1511 1530 9.893305 AGGTAAATCAAAAACATTTCGTAGAAG 57.107 29.630 0.00 0.00 45.90 2.85
1514 1533 9.672086 TTCAGGTAAATCAAAAACATTTCGTAG 57.328 29.630 0.00 0.00 0.00 3.51
1523 1542 4.552355 CCGGGTTCAGGTAAATCAAAAAC 58.448 43.478 0.00 0.00 0.00 2.43
1589 1622 7.030165 GGGTAAACGAGAAGGTTTAGTACTAC 58.970 42.308 0.91 0.00 41.56 2.73
1590 1623 6.152831 GGGGTAAACGAGAAGGTTTAGTACTA 59.847 42.308 0.00 0.00 41.56 1.82
1591 1624 5.047021 GGGGTAAACGAGAAGGTTTAGTACT 60.047 44.000 0.00 0.00 41.56 2.73
1601 1634 2.853235 AGTTGGGGGTAAACGAGAAG 57.147 50.000 0.00 0.00 32.65 2.85
1728 1761 3.795688 ATTTCATCACTGTCACCACCT 57.204 42.857 0.00 0.00 0.00 4.00
1778 1811 2.265096 AGGAACTCTTCGTCCGTCC 58.735 57.895 0.00 0.00 0.00 4.79
2200 2233 7.862372 TCACAGAGAACTGAAATATTGCAAAAC 59.138 33.333 1.71 0.00 46.03 2.43
2494 2527 4.408821 AGGCGGCCATGCGAGAAA 62.409 61.111 23.09 0.00 35.06 2.52
2907 3102 5.578336 GGTGAAAATAAGCAAAGAGGCAATC 59.422 40.000 0.00 0.00 35.83 2.67
2965 3160 1.347817 GCTGTCCGCTTCTTGACGAG 61.348 60.000 0.00 0.00 34.18 4.18
2978 3173 1.896220 TTTGATGTGTCAGGCTGTCC 58.104 50.000 15.27 7.17 35.39 4.02
3122 3319 4.347583 TCCTCCATTTTGTTTCAGGCAAAT 59.652 37.500 0.00 0.00 35.99 2.32
3152 3349 6.223120 ACATTAAGTTTTGTGAATCTTGGGC 58.777 36.000 0.00 0.00 0.00 5.36
3292 3489 2.040544 CCATTGCCTCCGTGGTGAC 61.041 63.158 0.00 0.00 38.35 3.67
3397 3595 3.244700 CCTCCATCTTGTTTGTCCAGAGT 60.245 47.826 0.00 0.00 0.00 3.24
3417 3615 1.504275 AAGGCTGCAGTTCCATCCCT 61.504 55.000 16.64 8.31 0.00 4.20
3443 3641 4.577834 TGAACCGATATCTACGCATTCA 57.422 40.909 0.34 0.00 34.53 2.57
3450 3648 9.360093 CTTTCCAATAGATGAACCGATATCTAC 57.640 37.037 0.34 0.00 38.37 2.59
3481 3679 4.252878 TGATCGTAAGCAATGCTCAAAGA 58.747 39.130 8.71 8.36 38.25 2.52
3486 3684 5.657470 TTACATGATCGTAAGCAATGCTC 57.343 39.130 8.71 0.00 38.25 4.26
3543 3741 9.280174 CAACCAACTAAAAGAGGACTTATTACA 57.720 33.333 0.00 0.00 35.05 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.