>input_sequence_47188
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---------------------------------------------ATGTCCTGCTCCGTCGCCATCCCCAGCTCGCCGGT
GTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCGCCTCGCCCGAGTCCGTCT------CCGTCT
CGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTGCTGCGCGCCCAGATCCGCGAGGAGGCCTCC
CCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGGTCGGTGCTCAAGAGGCGGCGGCCGGCGCCGCTCAT
GGTGCCGGTCGACGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCCGTGGCCGCCGTGGAGTCGGATCCGAGCAACGAGG
TGGAGGAGGAGGGCAACGACTTCGCCGCCTACTGCCGGAGAGGGAGGGGGAGGAGAAGGGTGGAGATGGAGGACCGGCAT
GTGGCCCAGGTCGCGCTCGGTGGAGACCCCCAAGTGGTAAGCTCGATCGATGCAATTTCTCTTCTCTGTCATGAATTTA-
TTTGCACAACTTCTACGAAATGTTTTTGATTTAC-----CTG----AACCCGGGATGGAAATTTCT-GCCGTTTTGTCTA
AAATAAAA----TTGTTAGAGGTAGTACTAAACCTTCTCGTTTACCCCCAACTTTGCAGGCGTTGTTTGCTGTATTCGAT
GGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAAGTTCATGGCAGAGGAGGTGAGGAAGGTGGA
AGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGAGGACGGACGAAGAGTTCCTCAAGAGGGAGG
AGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAAAAGGGCGGCCTCACCGTGTCCAACACTGGAGATTGCCGTGCT
GTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGACCACCGGGCCTCCCGTGAGGATGAGAGGGAAAGAATTGA
GAATCTGGTAAGTAGATCTTGTATGCTTCGAATGTGTTTCATTATTTGTGTGACAATTGTAGTTTGAAGGATGTGTACTT
GATAAATAAACTAGACCTTGTTTCAGTTTGATAATAAAATTCTGTAATTGTATACAGTTAGTGGATAATTCTTGTTGTTT
GGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAAAATTTGAGTAATCATGAGCAAAGTTTTGCA
ATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGGCGGGTTCGTTGTGAACAACCGAGGGACATG
GCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACCTCAAGCAATGGGTGGTGGCTGATCCAGATA
CCAGGACACTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCCTCTGATGGCTTGTGGGATAAGGTGGATAACCAG
GAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAGGTTTCTCGCATGGCCGCCTGCAGAAGGCTTGTCGA
AACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATACAATTGCAGAAGTTCTCAGGTTCTTCTTAA-
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--------------------------------------------
>chr4D_1_TraesCS4D01G194900
CTATTAGACATCTTTGGTAACCTAATAAATAGTAATAAATTCATGATATGGAAGCAAATAAATATAAATGAATCTCTTAT
ATTTGGCAACCCAATAAAGTAGATAAATCATGGGCACATACCTATTTTATTGGTTTATAAGAAATAGCTCGAAAATATAT
ATTTTATAACCAAAATATAAACTTGTTTTCTCTATTTGTTTTGCATCAAGTTTTGTCCCGTATGATCTCTTATATTGTGT
TAAAAGCATTTGACCCTGTGACAACGGACGGACATATATCTTCTTTTTAGAACACAATACAAACACAACCACTTATATAT
AGACGCATACACTTATCTCTATGAACACACATGCATACCCTACCCCAATGAACATCTCTGAGAGACTGAGCCGGCATATC
ATCTTCAGATTGACGAAGTCACCACAGGCAACCCGTAGTCGACAGGAATGTCTCCTCTCACTAAACGTGCATGGCCAGAG
ATCCTGAAATAAATTCAGAAATAATGCAAGCACTAGGATTTGAACCCTAATGGGCTGGGATACCACTGTCGTGCTAACCA
TGCAACCACATGTTGGTTCGCCACGGCATATACATAATACAACTAAAATTGGCTAGAAATA-TTTCACGATTC---ACTA
TGGCACTAGGGAGTAGTACTATTAGTTTCTTCAAGGAAGGAAATCTTGCCCAACAATTGCACCAGC-AAACTTTCTACTT
GTGCCAGCGGTGCCACTCCATCTGCAACAGAAAAAACATTAAAAAACAATGCTCCTCCAGTCCAGTTCACAATTGCGAAT
TGCCCCTAGGGCCAAGCCAGTCCAGTTCCCACGGGACCGCCTCCCCCCCGCCCGCGACGCGTAGTGGCCACCGTATATAA
GCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAATCGAGGAAAAGCGAGGAGGCGTAGGAGCCG
CAGCCAAGACCCCGTCCGTCTCCCAAGGCCGAAGAAGCCCTCGCCATGTCCTGCTCCGTCGCCATCCCCAGCTCGCCGGT
GTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCGCCTCGCCCGAGTCCGTCT------CCGTCT
CGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTGCTGCGCGCCCAGATCCGCGAGGAGGCCTCC
CCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGGTCGGTGCTCAAGAGGCGGCGGCCGGCGCCGCTCAT
GGTGCCGGTCGACGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCCGTGGCCGCCGTGGAGTCGGATCCGAGCAACGAGG
TGGAGGAGGAGGGCAACGACTTCGCCGCCTACTGCCGGAGAGGGAGGGGGAGGAGAAGGGTGGAGATGGAGGACCGGCAT
GTGGCCCAGGTCGCGCTCGGTGGAGACCCCCAAGTGGTAAGCTCGATCGATGCAATTTCTCTTCTCTGTCATGAATTTA-
TTTGCACAACTTCTACGAAATGTTTTTGATTTAC-----CTG----AACCCGGGATGGAAATTTCT-GCCGTTTTGTCTA
AAATAAAA----TTGTTAGAGGTAGTACTAAACCTTCTCGTTTACCCCCAACTTTGCAGGCGTTGTTTGCTGTATTCGAT
GGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAAGTTCATGGCAGAGGAGGTGAGGAAGGTGGA
AGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGAGGACGGACGAAGAGTTCCTCAAGAGGGAGG
AGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAAAAGGGCGGCCTCACCGTGTCCAACACTGGAGATTGCCGTGCT
GTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGACCACCGGGCCTCCCGTGAGGATGAGAGGGAAAGAATTGA
GAATCTGGTAAGTAGATCTTGTATGCTTCGAATGTGTTTCATTATTTGTGTGACAATTGTAGTTTGAAGGATGTGTACTT
GATAAATAAACTAGACCTTGTTTCAGTTTGATAATAAAATTCTGTAATTGTATACAGTTAGTGGATAATTCTTGTTGTTT
GGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAAAATTTGAGTAATCATGAGCAAAGTTTTGCA
ATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGGCGGGTTCGTTGTGAACAACCGAGGGACATG
GCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACCTCAAGCAATGGGTGGTGGCTGATCCAGATA
CCAGGACACTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCCTCTGATGGCTTGTGGGATAAGGTGGATAACCAG
GAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAGGTTTCTCGCATGGCCGCCTGCAGAAGGCTTGTCGA
AACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATACAATTGCAGAAGTTCTCAGGTTCTTCTTAAC
TTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACAGAGTGGTGTATCGGGCCGGGCAGGATAGAC
TGATACCCATATGTTAATTTGCAAGCAAAATTTTAGGTGTGGTTGCACCATTTTGCAAGCATTCGACTCTTTTCGGAATA
CCATTCTTTATGTACTTAATTTACTTCCATTCATTCATTCTTTGATTCTAATGTAATAAGGCGGGGGTTAGTACTCACTT
CATACTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTAAATGGATTCAGCATGATTGCCTCTTTGCTTATT
TTCACCAATATTCCACTCTTGAAGTGCATGTGATTTATACTCGTCAAGAAGCGGACAGCCTGACACATCAAAATAATTTG
CAAATATAGAGCA-GAAGGTTCCAAAACTTAATGTTGACACAACTTTTTTTGCACATGAGGAATTTCAGTTCTGCCCGTT
GTGAGGAATTTCCAAATT-CCTCTAACCGAATGACTGAATTTGCCTGAAACAAAATGGAGGAAACCGGGCCCAAGATTCA
CAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGAATTGGTGCAACTGCAGCTATTCTCAGAGACAACAAGGGA
AATTTTATTGCGTCCCACTGCAAATTCATTGCTATTGCAGCCGATGCTGTCACCACGGAGGCAATGGCCATGAGAGATGG
ATTACTATTAGCTAATTCCCTTTGATTTAATAGGATAGAATCGGAATCT-ATTCCCTTCAAGTCATTAATTTCTACTCTG
GACAAACAAGATGGAGGGATGGAACTGCAGCCTTATTTGCTGAATGCGTAGATATCGGTTCATCTATTGGAAAGGTCATC
TTTGAGCATTGCTTACGATCATGTAATAATGCAGCGCATGTGCTAGCTAATCATAGTTATTGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTAATGAGGGAACTCGGGG
>chr4B_5
----TAGACATCTTTCGTAGCCCAATAAATAGTAATAAATTCATGATACATAAGCAAATGAATATAAATGAATCTCCTAT
ATTTGGCAACCCAATAAAGGAGATAAATCATGGGCACATACCTATTTTATCAGTT--TAAGAAATAGCTGGAAATC-TAT
ATTTTATAACCAAAATATGATTTTATTTTATCTATTTAGTTTGCACCAATATTTCTAAAACACTTGCC------------
-------------CCCCGTGACAACGCACGAGCATATACCTTATATAT--------------------------------
--------------------------------------------------------------------------------
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------------------------------------ATACAACTAAAATTCGATAGACAATGTTTCACAATCCACTACTA
TGGCAGTAGGGAGTAGTACTATTATTTTCTTCAAGGAAGGGAAGCTTGCCCAATAATTGCACCAGC-AAT-TTTCTACTT
GTGCCAGCGGTGCTACTCCGTCTGCAACAGAAAAAACATTAAAAAACAATGGTCCTCCAGTCCAGTTCACAATTGCGAAT
TGCCCCTAGGGCCAAGCCAGTCCAGTTCCCACGGGAGCGCCTC-CCCCCGCCCGCGACGCGTAGTGGCCACCGTATATAA
GCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAATCGAGGAAAAGCGAGGAGGCGTAGGAGCCG
CAGCGAAGACCCCGTCCGTCTCCCAAGGCCGAAGAAGCCCTCGCCATGTCCTGCTCCGTCGCCATCCCTAGCTCGCCGGT
GTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCGCCTCGCCCGAGTCCGTCT------CCGTGT
CGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTGCTGCGCGCTCAGATCCGCGAGGAGGCCTCC
CCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGATCGGTGCTGAAGAGGCGGCGGCCGGCGCCGCTCAT
GGTGCCGGTCGATGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCTGTGGCCGCCGTGGAATCGGATCCGAGCAACGAGG
TGGAGGAGGAGGGCGACGAGTTCGCGGCCTACTGCCGGAGAGGGAGGGGAAGGAGAAGGGTGGAGATGGAGGACCGGCAT
GTGGCCAAGGTCGCGCTCGGTGGAGACCCCGAAGTGGTAAGCTCGCTCGATGCATCTTCTCTTCTCTCTCATGATTTTGT
TTTGCACAATTTTTACGAAATATTTTTGATTTGACCTGACTG----AACCCGGGATGGAAATTTCTTGCTGTTTTGTCTA
ATACTCCGAACTTTGTTAGAG---GTACTAAACTTTCTCGTTTACCCCGAACTTTGCAGGCGCTGTTTGCTGTATTCGAT
GGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAAGTTCATGGCAGAGGTGGTGAGGAAGGTGGA
CGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGAAGACGGACGAAGAGTTCCTTAAGAGGGAGG
AGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAGAAGGGCGGCCTCACCGTGTCCAACACTGGAGATTGCCGTGCT
GTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGATCACCGGGCCTCCCGTGAGGATGAGAGGGAAAGAATTGA
GAACCTGGTAAGTAGATATTGTATGCCTCAAATGTGTTCCATTATTTGTGTGACAATTGTAGTTTGAAGGATGTGCACTT
GCTAAATAAACTAGACCTTGTTTCAATTTGATAATAAAATTCTGTAGTTGTATGCAGTTAGTGGATAACTCTTGTTGCTT
GGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAAAATTTGAGTAATCGTGAGCAAAATTATGCA
ATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGGCGGGTTCGTTGTGAACAACCGAGGGACATG
GCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACCTCAAGCAATGGGTGGTGGCTGATCCAGATA
CCAGGACGCTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCTTCTGATGGCTTGTGGGATAAGGTGGATAACCAG
GAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAAACTTCTCGCATCGCCGCCTGCAGAAGGCTTGTCGA
AACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATACAATTGCAGAAGTTCTCAGGTTCTTCTTAAC
TTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACGGAGGGGTGTATCGGGCCGGGCAGGATAGAC
TGATACCCATATGTTAATTTGCAAGCAAAATTTTAGGTGTCGTTGCACCATTTTGCAAGCATTCGACTCGTTTCGAAATA
CCATTCTTTATGTACTTAATTTAATTCCATTCATTCATTCTTTGATTCTAATGTAATAAGGCGGGGGTTAATACTCACTT
CATACTACTCCCTCCGTTCCTAAATATTTGTCTTTTTAGAGATATCAACAAGTGACTACATACAAACCAAAATGGTTGAA
TCTACAGTTTAAAATATGTCTACATACATCCGTATGTTGTAACCATTTGAAATGCCTAGAAAGACAAATATTTAGGAACG
GAGGGAGTAGAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTAAATGGATTCAGCATAATTGCCTCTTTGCTTATT
TTCACCAATATTCCACTCTTGAAGTGCATGTGATTTATATTCGTCAAGAAGCCGACAGCCCGACACATCAAAATAATTTG
CAAATATAGAGCAAGAAGGTTCCAAAACTTAATGTTGACACAACTTTTTTTGCACATGAGGAATTTCAGTTCTGCCCATT
GTGAGGAATTTCCAAATTCCTCTTAACAGAATGACTGAGTTTGCCTGAAACAAAATGGAGGAA-CCGGACCCAAGATTCA
CAAAACTTAATGTTGACGCAACTTTTTTTGCACATGAGGGAATTGGTGCAACGACAGCTATTCTCAGAG---ACGAGGGA
AATTTTATTGCGGCTCACTGCAGATTCGTTGCTATTGCAGCCGATGCTATCACCACGGAGGCAATGGCCATGAGAGATGG
ATTACTA-------------------------------------------------------------------------
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--------------------------------------------
>chr4A_615
AGAA----------------------------------------------------------------------------
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----------------------------------------------------------AAAGTTTCACGATTCACTACTA
TGGCACTAGGGAGCAGTATA---ATTTTCTTCAAGGAAGGAAATGTTGCCCAATAATTGCAGCAGCAAAT-TTTCTACCT
GTGCCAGCGGTGCCACTCCATCTGCAACAGAAAAAACATTAAGAAACAATGGCCCTGCAGTCCAGTTCACAATTGCGAAT
TGCCCCTAGGGCCAAGCGAGTGGAGTTCCCACGGGAGCGGCTC-CCCCCGC----GACGCGTAGTGGGCACCATATATAA
GCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAATCGAGGAAAAGCGAGGAGGCGTAGGAGCCG
CAGCCAAGACCCCGTCCGCCTCCCAAGGCCGAAGAAGCCCTCGCCATGTCCTGCTCCGTCGCCATCCCCAGCTCGCCGGT
CTTCTCCCCGTCGCGCCGCCCGCTCTCCTGCAAGGCCGCCTCCGCCTCCGCCTCGCCCGAGTCCGTCTCCGTGTCCGTCT
CGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTGCTGCGCGCCCAGATCCGCGAGGAGGCCTCC
CCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGCCGCCGCCGGGTCGATGCTCAAGAGGCGAAGGCCGGCGCCGCTCAT
GGTGCCGGTCGACGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCCGTCGCCGCCGTGGAGTCGGATCCGAGCAACGAGG
TGGAGGAGGAGGGCGACGAGTTCGCGGCCTACTGCCGGAGAGGGAGGGGGAGGAGAAGGGTGGAGATGGAGGACCGGCAT
GTGGCCCAGGTCGCGCTCGGTGGAGACCCCCAAGTGGTAAGCTCGCTCGATGCATCTTCTCTTCTCTGTCATGAATTTGT
TTTGCACAATTTTTACAAAATATTTTTATTTGAC-----TTGACTAAACCCGGGATGGAAATTTCTTGCCGTTTTGTCTA
ATATAAAA----TTGTTAGAG---GTACTAAACTTTCTCGTTTACCCCCAACTTTGCAGGCGTTGTTTGCTGTATTCGAT
GGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAAGTTCATGGCAGAGGAGGTGAGGAAGGTGGA
CGGTGGTGACAGTGATGAGATTGAGGGGGCTGTGAAGAAATGTTACCTGAAGACGGACGAAGAGTTCCTCAAGAGGGAGG
AGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAGAAGGGCGGCCTCACCGTGTCCAACACTGGAGATTGCCGTGCT
GTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGACCACCGGGCCTCCCGTGAGGATGAGAGGGAAAGAATTGA
GAATCTGGTAAGTAGATCTTGTATGCTTCGAATGTGTTTAATTATTTGTGTGACAATTGTAGTTTGAAGGATGCGCACTT
GATAAATAAACTAGACCTTGTTTCAGTTTGATAATAAAATTCTGTAATTGTATACAGCTAGTGGATAATTCTTGTTGCTT
GGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAAAATTTGAGTAATCATGAGCAAAATTTTGCA
ATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCCATTATTTTTCAGGGCGGGTTTGTTGTGAACAACCGAGGGACATG
GCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGCGATGCACACCTCAAGCAATGGGTGGTGGCTGATCCAGATA
CCAGGACACTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCCTCTGATGGCTTGTGGGATAAGGTGGATAACCAG
GAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGATAAGGCTTCTCGCATGGCCGCCTGCAGAAGGCTTGTTGA
AACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATACAATTGCAGAAGTTCTCAGGTTCTTCTTAAC
TTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACAGAGTGGTGTATCGGGGTGGGCAGGATAGAC
TGATACCCATATGTTAATTTGCAAGCAAAATATTAGGTGTGGTTGCACCATTTTGCAGGCATTCAACTCTTTTCGTAGTA
CCATTCTTTATGTACTTAATTTAATTCCATTCATTCATTCTTTGGTTCTGATGTAATAAGGCGGGGGTTAGTACTCACTT
CATAC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TAGAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTACATGGATTCAGCATAATTGCCTCTTTGCTTATT
TTCGCCAATATTCCACTCTTGAAGTGCATGTGGTTTATGTTCGTCAAGAAATCGACAGCC-GACACATCAAAATAATTTG
CAAATATAGCGCATGAAGGTTCCAAAATTA--------------------------------------------------
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>chr2A_3068
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--------------------------------------------------------------ATCTCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACAACAGGGGA
AATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCACGGAGGCAATGACCATGAGAGATGG
ATTACTATTCGCTAATTCCCTTGGTTTTAGTAGGATAGAAGCGGAGTTTGATTCCCTTCAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCGTATTTGCAGAATGCATAGATATTTGTTCTTCTATTGAAAAGGTCACC
TTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCATAGTTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATGAGGGAACTCG---
>chr7D_3068
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--------------------------------------------------------------ATCTCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAGGATTCA
TAACACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACAACAGGGGA
AATTTTATTGCGGCTCACTGCAAATTTATTGCTATTGCAGCCGATGCTATCACCATGGAGGCAATGGCCATGAGAGATGG
ATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTGATTCCCTTCAAGTCATTAATTTCTGCTATG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCTTATTTGTAGAATGCATAGATATCGGTTTATCTATTGGAAAGGTCACC
TTTAGGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCATAGTTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATGAGGAAACTCG---
>chr2D_3068
--------------------------------------------------------------------------------
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--------------------------------------------------------------ATCTCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGACGCAACTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACATCAGGGGA
AATTTTATTGTGGCTCAGTGCAAATTCATTGCTATTGTAGCCGATGCTATCACCACGGAGGCAATGGCCATGAGAGATGA
ATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTGATTCCCTTCAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTACAACCTTATTTGCAGAATGCATAGATATTGGTTCATCTATTGGAAAGGTCACC
TTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCATAGCTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTTTTGATGAGGGAACTCG---
>chr6A_3068
--------------------------------------------------------------------------------
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--------------------------------------------------------------ATCTCAGTCCTGTCCATT
GTGAGGAATTTCTAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACAACAGGGGA
AATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCACGAAGGCAATGGCCATGAGAGATGG
ATTACTATTCGCTAATTCCCTTGGTTTTAGTAGGATAGAAGTGGAGTCTGATTCCCTTCAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCGTATTTGCAGAATGCATAGATATTTGTTCTTCTATTGGAAAGGTCACC
TTTAAGCATTGCTTACGATCATATAATAATGTAGCGCATGTGCTAGCTAATCATAGTTATCATAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCTCGATTTCTTGATGAGGAAACTCG---
>chr6A_3068
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--------------------------------------------------------------ATCTCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACAGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCTAAGATTCA
TAAAACTTAATGTTGACGCAATTTTTTTTGCACATGAGGGCTTTGGTGCAACTGCAGCTATTCTCAGAGACAACAGGGGA
AATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCACGGAGGCAATGGCCATGAGAGATGG
ATTACTATTCGCTAATTCCCTTGGTTTTAGTAGGATAGAAGCGGAGTCTGATTCCCTTTAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCGTATTTGCAGAATGCATAGATATTTGTTCTTCTATTGGAAAGGTCACC
TTTAAACATTGCTTACGATCATGTAATAATGTATCTCATGTGCTAGCTAATCATAGTTATCGTAATAAGTCCACTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATGAGGGAACTCG---
>chr4D_3071
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-----------------------------------------------------------------TCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGACGCAGGTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACAACAGGGGA
AATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCATGGAGGCAATGGCTATGAGAGATGG
ATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTGACTCCCTTCAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCTTATTTGCAGAATGCATAGATATTTGTTCGTCTATTGGAAAGGTCACC
TTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCATAGTTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATGAGGGAACTCGTGG
>chr5D_3071
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-----------------------------------------------------------------TCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGAATGGCCGAG-TTGCCTGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGACGCAGGTTTTTTTGCACATGAGGGCATTGGTGCAACTGCAGCTATTCTCAGAGACAACAGAGGA
AATTTTATTGCGACTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCACGGAGGCAATGGCTATGAGAGATGG
ATAACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCAGAGTCTGACTCCCTTCAAGTCATTAATTTCTGCTCTG
GACAAACAAGATGGTGGGATGAAGCTGCAGTCTTATTTGCAGAATGCATAGATATTTGTTCATCTATTGGAAAGGTCACC
TTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCATAGTTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATGAGGGAACTCGTGG
>chr2B_3071
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-----------------------------------------------------------------TCAGTCCTGTCCATT
GTGAGGAATTTCCAAAATGCCTCTAACCGGATGACCGAG-TTGCATGAAACAAAATGGAGGAAACCGGACCCAAGATTCA
TAAAACTTAATGTTGATGCAGTTTTTTTTGCACATGAGGGCATTGGTGCAACTACAGCTATTCTCAGAGACAACATGGGA
AATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTATCACCACGGAGGCAATGGCCATGAGAGATTG
ATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTGATTCCCTTCAAGTCATTAATTTCTGCTCTG
GACATACAAGATGGTGGGATGAAGCTGCAGCCTTATTTGCAGAATGCATAGATATTGGTTCATCTATTGGAAAGGCCACC
TTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAATCGTAGTTATCGTAATAAGTCCTCTTTTAG
TTGGTTGGACGAGCCTCCCGATTTCTTGATAAGGGAACTCGTGG
>SNPs
SS-S-----------S---S--S-------------------------SSS--------S----------------S---
-------------------S------------------------------SS---SS------------S----SSS---
------------------S-SS--S----S-------SS------S---SS---S-SSSSS-SSSS-SSSSSSSSSSSSS
SSSSSSSSSSSSS---S---------S---SS------S---S-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-S----S-S--------------------
------------------------S----------------------------S---------------SS---------
---------------------------------------------------S----------------------------
------------------------------------S------S------------------------------------
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--------------S----S-----S------------------------------------------------------
---------------------------------------------S--------SS----------------------S-
---------S--S--------S----------------------------------------------------------
-S-------------------SSS---------S----------------------------------------------
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S-------------------------------------------------S-----------------------------
-------------------------------------S------------------------------------------
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---------------------------------------------------------------------------S----
-----------------------------------------------------------------------------S--
------------------------------------------------------------------------S-------
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----------------------------------------------S---------------------------------
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---------------------------------------------------------------------------S----
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
---------------------------------------S------------S-------S-------------------
-----------------------------------------------------------------------------S--
--------------------------------------S-----------------------------S-----------
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------------S-S---------------------------------S-------------------------------
---------S------------S------S----------S----S----------------------------S-----
--------------S------S-S----------------S------S------------------------------S-
---S---------------------------S----------------------------S-------------------
---------------------------S-------------S--
>forward_564
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----------------------------------------------------------------ACTGTCGTGCTAACCA
TGCA----------------------------------------------------------------------------
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>reverse_1811
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--------------------------------------------------GGACGGACGAAGAGTTCCT-----------
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>forward_569
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---------------------------------------------------------------------CGTGCTAACCA
TGCAACCAC-----------------------------------------------------------------------
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>reverse_2527
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----------------------------------------------TTTCTCGCATGGCCGCCT----------------
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>forward_1761
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-------------------------------------------------------------AGGAGGTGAGGAAGGTGGA
A-------------------------------------------------------------------------------
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>reverse_3160
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---------------------------------------CTCGTCAAGAAGCGGACAGC---------------------
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--------------------------------------------
