Multiple sequence alignment - TraesCS4D01G192300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G192300 chr4D 100.000 2831 0 0 1 2831 335348052 335345222 0.000000e+00 5228.0
1 TraesCS4D01G192300 chr4B 90.158 1646 81 31 522 2134 413498383 413496786 0.000000e+00 2067.0
2 TraesCS4D01G192300 chr4B 95.977 348 14 0 2236 2583 413496786 413496439 1.470000e-157 566.0
3 TraesCS4D01G192300 chr4B 91.932 409 12 2 2444 2831 413496306 413495898 1.150000e-153 553.0
4 TraesCS4D01G192300 chr4B 94.667 300 10 3 1 295 413499025 413498727 7.150000e-126 460.0
5 TraesCS4D01G192300 chr4B 95.714 140 6 0 2444 2583 413496442 413496303 2.840000e-55 226.0
6 TraesCS4D01G192300 chr4A 89.578 1564 98 28 390 1921 137527032 137528562 0.000000e+00 1925.0
7 TraesCS4D01G192300 chr4A 93.333 630 19 10 2224 2831 137529326 137529954 0.000000e+00 909.0
8 TraesCS4D01G192300 chr4A 94.636 261 13 1 1 260 137525259 137525519 1.220000e-108 403.0
9 TraesCS4D01G192300 chr4A 100.000 31 0 0 246 276 137525536 137525566 1.100000e-04 58.4
10 TraesCS4D01G192300 chr4A 100.000 31 0 0 246 276 137526690 137526720 1.100000e-04 58.4
11 TraesCS4D01G192300 chr1D 95.161 310 14 1 2057 2365 247001715 247002024 3.280000e-134 488.0
12 TraesCS4D01G192300 chr6B 91.150 226 16 4 2608 2831 137455532 137455755 1.270000e-78 303.0
13 TraesCS4D01G192300 chr6A 91.150 226 16 4 2608 2831 81115717 81115940 1.270000e-78 303.0
14 TraesCS4D01G192300 chr6A 97.368 38 1 0 2005 2042 280122341 280122304 6.550000e-07 65.8
15 TraesCS4D01G192300 chr6D 87.649 251 24 4 2583 2831 63765273 63765518 4.620000e-73 285.0
16 TraesCS4D01G192300 chr6D 85.714 77 8 3 2133 2207 63765003 63765078 8.410000e-11 78.7
17 TraesCS4D01G192300 chr2D 97.368 38 1 0 2005 2042 268204523 268204486 6.550000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G192300 chr4D 335345222 335348052 2830 True 5228.00 5228 100.0000 1 2831 1 chr4D.!!$R1 2830
1 TraesCS4D01G192300 chr4B 413495898 413499025 3127 True 774.40 2067 93.6896 1 2831 5 chr4B.!!$R1 2830
2 TraesCS4D01G192300 chr4A 137525259 137529954 4695 False 670.76 1925 95.5094 1 2831 5 chr4A.!!$F1 2830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 1488 0.031994 GCACCGAGCATTTTGTGGTT 59.968 50.0 0.0 0.0 44.79 3.67 F
1395 2844 0.318441 CTTTGTCGCCCACTCTCTGA 59.682 55.0 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 3171 0.095935 CAGCTGAAACAATCGAGGCG 59.904 55.000 8.42 0.00 0.0 5.52 R
2561 4870 1.676529 TCCATCGCACTGAGTAGCTAC 59.323 52.381 16.43 16.43 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 4.887987 GCGCCTCTGCTCATCGCT 62.888 66.667 0.00 0.00 42.19 4.93
171 172 4.018649 TCATCGCTTTTGTACGATCGTA 57.981 40.909 23.54 23.54 45.35 3.43
182 183 3.855379 TGTACGATCGTATTGACAGTTGC 59.145 43.478 29.02 13.51 32.82 4.17
203 204 2.969238 GGCGCCGGAGATGTGATG 60.969 66.667 12.58 0.00 0.00 3.07
215 217 2.486982 AGATGTGATGCTTGACAGTTGC 59.513 45.455 0.00 0.00 0.00 4.17
277 315 3.565902 GTGTTGGTTTCAGAGAAGAAGGG 59.434 47.826 0.00 0.00 0.00 3.95
304 1488 0.031994 GCACCGAGCATTTTGTGGTT 59.968 50.000 0.00 0.00 44.79 3.67
311 1495 0.581053 GCATTTTGTGGTTTGGCGTG 59.419 50.000 0.00 0.00 0.00 5.34
334 1518 6.692681 GTGTAACGTTTTGTACTACTGAGTCA 59.307 38.462 5.91 0.00 37.10 3.41
335 1519 6.914215 TGTAACGTTTTGTACTACTGAGTCAG 59.086 38.462 18.83 18.83 37.10 3.51
337 1521 6.624352 ACGTTTTGTACTACTGAGTCAGTA 57.376 37.500 27.27 27.27 43.46 2.74
340 1524 6.087820 CGTTTTGTACTACTGAGTCAGTAAGC 59.912 42.308 28.39 21.30 44.80 3.09
341 1525 5.640189 TTGTACTACTGAGTCAGTAAGCC 57.360 43.478 28.39 19.66 44.80 4.35
342 1526 4.659115 TGTACTACTGAGTCAGTAAGCCA 58.341 43.478 28.39 21.49 44.80 4.75
343 1527 4.458295 TGTACTACTGAGTCAGTAAGCCAC 59.542 45.833 28.39 22.27 44.80 5.01
345 1529 4.153411 ACTACTGAGTCAGTAAGCCACTT 58.847 43.478 28.39 6.86 44.80 3.16
346 1530 3.393089 ACTGAGTCAGTAAGCCACTTG 57.607 47.619 24.36 0.00 43.46 3.16
353 1624 2.912956 TCAGTAAGCCACTTGGGAAGAT 59.087 45.455 0.00 0.00 40.01 2.40
362 1633 4.622220 GCCACTTGGGAAGATACGAAGTTA 60.622 45.833 0.00 0.00 40.37 2.24
369 1640 6.346096 TGGGAAGATACGAAGTTAAATCCAG 58.654 40.000 0.00 0.00 37.78 3.86
375 1646 8.494016 AGATACGAAGTTAAATCCAGGAAAAG 57.506 34.615 0.00 0.00 37.78 2.27
379 1650 7.423199 ACGAAGTTAAATCCAGGAAAAGAAAC 58.577 34.615 0.00 0.00 37.78 2.78
382 1653 6.749139 AGTTAAATCCAGGAAAAGAAACAGC 58.251 36.000 0.00 0.00 0.00 4.40
383 1654 6.323739 AGTTAAATCCAGGAAAAGAAACAGCA 59.676 34.615 0.00 0.00 0.00 4.41
384 1655 5.813513 AAATCCAGGAAAAGAAACAGCAT 57.186 34.783 0.00 0.00 0.00 3.79
385 1656 5.397142 AATCCAGGAAAAGAAACAGCATC 57.603 39.130 0.00 0.00 0.00 3.91
386 1657 4.104383 TCCAGGAAAAGAAACAGCATCT 57.896 40.909 0.00 0.00 0.00 2.90
388 1783 4.077822 CCAGGAAAAGAAACAGCATCTCT 58.922 43.478 0.00 0.00 0.00 3.10
430 1829 3.782244 CAACGCTGAGCACCGAGC 61.782 66.667 4.88 0.00 46.19 5.03
440 1839 3.434319 CACCGAGCAATGCCGCTT 61.434 61.111 0.00 0.00 44.01 4.68
441 1840 3.434319 ACCGAGCAATGCCGCTTG 61.434 61.111 0.00 0.00 44.01 4.01
443 1842 2.099062 CGAGCAATGCCGCTTGAC 59.901 61.111 0.00 0.40 44.92 3.18
444 1843 2.679934 CGAGCAATGCCGCTTGACA 61.680 57.895 0.00 0.00 44.92 3.58
445 1844 1.154150 GAGCAATGCCGCTTGACAC 60.154 57.895 0.00 0.00 44.01 3.67
446 1845 1.855213 GAGCAATGCCGCTTGACACA 61.855 55.000 0.00 0.00 44.01 3.72
450 1849 0.819259 AATGCCGCTTGACACACACT 60.819 50.000 0.00 0.00 0.00 3.55
453 1852 0.319555 GCCGCTTGACACACACTCTA 60.320 55.000 0.00 0.00 0.00 2.43
454 1853 1.702886 CCGCTTGACACACACTCTAG 58.297 55.000 0.00 0.00 0.00 2.43
457 1856 2.030717 CGCTTGACACACACTCTAGACT 60.031 50.000 0.00 0.00 0.00 3.24
459 1858 3.612955 GCTTGACACACACTCTAGACTCC 60.613 52.174 0.00 0.00 0.00 3.85
460 1859 2.515854 TGACACACACTCTAGACTCCC 58.484 52.381 0.00 0.00 0.00 4.30
461 1860 2.158519 TGACACACACTCTAGACTCCCA 60.159 50.000 0.00 0.00 0.00 4.37
462 1861 2.891580 GACACACACTCTAGACTCCCAA 59.108 50.000 0.00 0.00 0.00 4.12
463 1862 3.305720 ACACACACTCTAGACTCCCAAA 58.694 45.455 0.00 0.00 0.00 3.28
541 1959 1.808945 CACAGAGTTGCACTTCCCATC 59.191 52.381 0.00 0.00 0.00 3.51
598 2020 4.514401 CCAGTTCCCATGGAGTAAAGTAC 58.486 47.826 15.22 0.00 40.51 2.73
599 2021 4.225267 CCAGTTCCCATGGAGTAAAGTACT 59.775 45.833 15.22 1.41 40.51 2.73
600 2022 5.424252 CCAGTTCCCATGGAGTAAAGTACTA 59.576 44.000 15.22 0.00 40.51 1.82
601 2023 6.338937 CAGTTCCCATGGAGTAAAGTACTAC 58.661 44.000 15.22 0.00 39.59 2.73
602 2024 6.154706 CAGTTCCCATGGAGTAAAGTACTACT 59.845 42.308 15.22 0.00 40.41 2.57
603 2025 7.341256 CAGTTCCCATGGAGTAAAGTACTACTA 59.659 40.741 15.22 0.00 40.41 1.82
604 2026 7.341512 AGTTCCCATGGAGTAAAGTACTACTAC 59.658 40.741 15.22 0.00 40.41 2.73
605 2027 6.978261 TCCCATGGAGTAAAGTACTACTACT 58.022 40.000 15.22 14.46 40.41 2.57
606 2028 8.106017 TCCCATGGAGTAAAGTACTACTACTA 57.894 38.462 15.22 4.55 40.41 1.82
607 2029 7.995488 TCCCATGGAGTAAAGTACTACTACTAC 59.005 40.741 15.22 15.81 40.41 2.73
635 2062 3.036429 GCTCTCCGTCCCAGGCATT 62.036 63.158 0.00 0.00 0.00 3.56
714 2141 2.912714 CCCCGGCCGGAAATTCTA 59.087 61.111 45.44 0.00 37.50 2.10
861 2289 3.009275 CCATGGTGGCCATCTCCA 58.991 61.111 18.94 17.03 43.15 3.86
926 2361 3.322254 CACGGCTCCTGGAAGATAATACT 59.678 47.826 0.00 0.00 34.07 2.12
927 2362 4.523173 CACGGCTCCTGGAAGATAATACTA 59.477 45.833 0.00 0.00 34.07 1.82
928 2363 4.767928 ACGGCTCCTGGAAGATAATACTAG 59.232 45.833 0.00 0.00 34.07 2.57
929 2364 4.767928 CGGCTCCTGGAAGATAATACTAGT 59.232 45.833 0.00 0.00 34.07 2.57
930 2365 5.944599 CGGCTCCTGGAAGATAATACTAGTA 59.055 44.000 4.77 4.77 34.07 1.82
931 2366 6.127952 CGGCTCCTGGAAGATAATACTAGTAC 60.128 46.154 4.31 0.00 34.07 2.73
932 2367 6.949463 GGCTCCTGGAAGATAATACTAGTACT 59.051 42.308 4.31 0.00 34.07 2.73
933 2368 8.108364 GGCTCCTGGAAGATAATACTAGTACTA 58.892 40.741 4.31 1.89 34.07 1.82
934 2369 9.689501 GCTCCTGGAAGATAATACTAGTACTAT 57.310 37.037 4.31 3.90 34.07 2.12
991 2426 3.627577 CACACACTTTGGTGAGCTTAGTT 59.372 43.478 3.06 0.00 45.61 2.24
993 2428 3.059597 CACACTTTGGTGAGCTTAGTTCG 60.060 47.826 3.06 0.00 45.61 3.95
1008 2446 1.067776 AGTTCGTTCGTGATGGAGGAC 60.068 52.381 0.00 0.00 0.00 3.85
1045 2483 1.938596 AGGAGGGAGCAGGAGGAGA 60.939 63.158 0.00 0.00 0.00 3.71
1320 2764 1.760192 ATGGCATCTTCCACAAGCTC 58.240 50.000 0.00 0.00 39.25 4.09
1344 2788 1.984570 CAGCTCGTCTCCTTCCCCA 60.985 63.158 0.00 0.00 0.00 4.96
1349 2793 2.606826 GTCTCCTTCCCCACCGGT 60.607 66.667 0.00 0.00 0.00 5.28
1375 2824 5.704053 ACAGGTAAGTTACTGCGCTTTTAAT 59.296 36.000 9.73 0.00 38.25 1.40
1381 2830 6.313744 AGTTACTGCGCTTTTAATCTTTGT 57.686 33.333 9.73 0.00 0.00 2.83
1385 2834 1.911464 GCGCTTTTAATCTTTGTCGCC 59.089 47.619 0.00 0.00 35.92 5.54
1388 2837 3.242518 GCTTTTAATCTTTGTCGCCCAC 58.757 45.455 0.00 0.00 0.00 4.61
1389 2838 3.057526 GCTTTTAATCTTTGTCGCCCACT 60.058 43.478 0.00 0.00 0.00 4.00
1395 2844 0.318441 CTTTGTCGCCCACTCTCTGA 59.682 55.000 0.00 0.00 0.00 3.27
1402 2851 2.631062 TCGCCCACTCTCTGAAACTTTA 59.369 45.455 0.00 0.00 0.00 1.85
1403 2852 2.737252 CGCCCACTCTCTGAAACTTTAC 59.263 50.000 0.00 0.00 0.00 2.01
1404 2853 3.555168 CGCCCACTCTCTGAAACTTTACT 60.555 47.826 0.00 0.00 0.00 2.24
1405 2854 3.748568 GCCCACTCTCTGAAACTTTACTG 59.251 47.826 0.00 0.00 0.00 2.74
1406 2855 4.743955 GCCCACTCTCTGAAACTTTACTGT 60.744 45.833 0.00 0.00 0.00 3.55
1407 2856 5.510861 GCCCACTCTCTGAAACTTTACTGTA 60.511 44.000 0.00 0.00 0.00 2.74
1408 2857 6.522054 CCCACTCTCTGAAACTTTACTGTAA 58.478 40.000 0.00 0.00 0.00 2.41
1427 2876 3.485463 AATTGACAGTCTTCCGTGGAA 57.515 42.857 1.31 0.68 0.00 3.53
1489 2938 1.901948 CGAGCAGGCCGGGATACTA 60.902 63.158 2.18 0.00 0.00 1.82
1510 2959 1.669999 GCGCCATGGCTTCCAAGATT 61.670 55.000 33.07 0.00 36.95 2.40
1660 3118 0.770166 TCATGTCCAACCTCCCCACA 60.770 55.000 0.00 0.00 0.00 4.17
1695 3153 4.158394 GCCAATCTGCTATTTTCAGTTCCA 59.842 41.667 0.00 0.00 33.48 3.53
1705 3163 6.205658 GCTATTTTCAGTTCCACCATATCCTC 59.794 42.308 0.00 0.00 0.00 3.71
1712 3171 1.754803 TCCACCATATCCTCGTGTGTC 59.245 52.381 0.00 0.00 0.00 3.67
1751 3210 4.153835 GCTGACAGGATTTGTTCTTCTCTG 59.846 45.833 4.26 0.00 41.05 3.35
1863 3326 9.331282 AGTAGATAGATTTGGCACTTGTTATTC 57.669 33.333 0.00 0.00 0.00 1.75
1945 3462 5.068987 ACATGTTTGCACCTTGATAAGTGTT 59.931 36.000 0.00 0.00 0.00 3.32
1957 3474 4.575885 TGATAAGTGTTCTGGCCTGTAAC 58.424 43.478 3.32 10.66 0.00 2.50
1995 3518 4.767928 ACTGGTCCTCCTCGCTTATTATAG 59.232 45.833 0.00 0.00 34.23 1.31
2011 3537 7.931948 GCTTATTATAGTTGCTACTCCTTGGAA 59.068 37.037 3.45 0.00 35.78 3.53
2012 3538 9.262358 CTTATTATAGTTGCTACTCCTTGGAAC 57.738 37.037 3.45 0.00 35.78 3.62
2134 4171 2.500504 AGCCTACTAAACCGGAAAGGAG 59.499 50.000 9.46 8.14 45.00 3.69
2135 4172 2.419713 GCCTACTAAACCGGAAAGGAGG 60.420 54.545 22.10 22.10 43.32 4.30
2136 4173 3.102204 CCTACTAAACCGGAAAGGAGGA 58.898 50.000 21.98 3.76 43.15 3.71
2137 4174 3.516700 CCTACTAAACCGGAAAGGAGGAA 59.483 47.826 21.98 1.25 43.15 3.36
2138 4175 4.019950 CCTACTAAACCGGAAAGGAGGAAA 60.020 45.833 21.98 0.00 43.15 3.13
2139 4176 4.652679 ACTAAACCGGAAAGGAGGAAAT 57.347 40.909 9.46 0.00 45.00 2.17
2140 4177 5.767277 ACTAAACCGGAAAGGAGGAAATA 57.233 39.130 9.46 0.00 45.00 1.40
2141 4178 6.323210 ACTAAACCGGAAAGGAGGAAATAT 57.677 37.500 9.46 0.00 45.00 1.28
2142 4179 7.441903 ACTAAACCGGAAAGGAGGAAATATA 57.558 36.000 9.46 0.00 45.00 0.86
2143 4180 7.864770 ACTAAACCGGAAAGGAGGAAATATAA 58.135 34.615 9.46 0.00 45.00 0.98
2144 4181 8.500238 ACTAAACCGGAAAGGAGGAAATATAAT 58.500 33.333 9.46 0.00 45.00 1.28
2147 4184 9.877222 AAACCGGAAAGGAGGAAATATAATAAT 57.123 29.630 9.46 0.00 45.00 1.28
2148 4185 8.863872 ACCGGAAAGGAGGAAATATAATAATG 57.136 34.615 9.46 0.00 45.00 1.90
2149 4186 7.393515 ACCGGAAAGGAGGAAATATAATAATGC 59.606 37.037 9.46 0.00 45.00 3.56
2150 4187 7.611855 CCGGAAAGGAGGAAATATAATAATGCT 59.388 37.037 0.00 0.00 45.00 3.79
2151 4188 9.667107 CGGAAAGGAGGAAATATAATAATGCTA 57.333 33.333 0.00 0.00 0.00 3.49
2169 4206 9.799106 ATAATGCTATTATTACTTTGTCAGCCT 57.201 29.630 0.00 0.00 0.00 4.58
2171 4208 8.608844 ATGCTATTATTACTTTGTCAGCCTAC 57.391 34.615 0.00 0.00 0.00 3.18
2172 4209 7.792032 TGCTATTATTACTTTGTCAGCCTACT 58.208 34.615 0.00 0.00 0.00 2.57
2173 4210 8.920174 TGCTATTATTACTTTGTCAGCCTACTA 58.080 33.333 0.00 0.00 0.00 1.82
2174 4211 9.413048 GCTATTATTACTTTGTCAGCCTACTAG 57.587 37.037 0.00 0.00 0.00 2.57
2175 4212 9.915629 CTATTATTACTTTGTCAGCCTACTAGG 57.084 37.037 0.00 0.00 38.80 3.02
2187 4224 1.955080 CCTACTAGGCTACAAGACCGG 59.045 57.143 0.00 0.00 0.00 5.28
2188 4225 2.422519 CCTACTAGGCTACAAGACCGGA 60.423 54.545 9.46 0.00 0.00 5.14
2189 4226 1.472188 ACTAGGCTACAAGACCGGAC 58.528 55.000 9.46 0.10 0.00 4.79
2190 4227 1.272313 ACTAGGCTACAAGACCGGACA 60.272 52.381 9.46 0.00 0.00 4.02
2191 4228 1.405821 CTAGGCTACAAGACCGGACAG 59.594 57.143 9.46 0.83 0.00 3.51
2202 4239 3.698250 CCGGACAGGTTTGAAGTCA 57.302 52.632 0.00 0.00 34.04 3.41
2203 4240 1.226746 CCGGACAGGTTTGAAGTCAC 58.773 55.000 0.00 0.00 34.04 3.67
2204 4241 1.202651 CCGGACAGGTTTGAAGTCACT 60.203 52.381 0.00 0.00 34.04 3.41
2205 4242 1.867233 CGGACAGGTTTGAAGTCACTG 59.133 52.381 0.00 0.00 34.04 3.66
2206 4243 1.604278 GGACAGGTTTGAAGTCACTGC 59.396 52.381 0.00 0.00 34.04 4.40
2207 4244 2.565841 GACAGGTTTGAAGTCACTGCT 58.434 47.619 0.00 0.00 32.60 4.24
2208 4245 2.289002 GACAGGTTTGAAGTCACTGCTG 59.711 50.000 0.00 0.00 32.60 4.41
2209 4246 2.292267 CAGGTTTGAAGTCACTGCTGT 58.708 47.619 0.00 0.00 0.00 4.40
2210 4247 2.032550 CAGGTTTGAAGTCACTGCTGTG 59.967 50.000 16.95 16.95 45.07 3.66
2211 4248 1.334869 GGTTTGAAGTCACTGCTGTGG 59.665 52.381 21.80 5.52 43.94 4.17
2212 4249 2.017049 GTTTGAAGTCACTGCTGTGGT 58.983 47.619 21.80 8.52 43.94 4.16
2213 4250 3.202906 GTTTGAAGTCACTGCTGTGGTA 58.797 45.455 21.80 2.57 43.94 3.25
2214 4251 3.769739 TTGAAGTCACTGCTGTGGTAT 57.230 42.857 21.80 9.33 43.94 2.73
2215 4252 3.044235 TGAAGTCACTGCTGTGGTATG 57.956 47.619 21.80 0.00 43.94 2.39
2216 4253 1.734465 GAAGTCACTGCTGTGGTATGC 59.266 52.381 21.80 5.18 43.94 3.14
2217 4254 0.686789 AGTCACTGCTGTGGTATGCA 59.313 50.000 21.80 0.00 43.94 3.96
2218 4255 1.072173 AGTCACTGCTGTGGTATGCAA 59.928 47.619 21.80 0.00 43.94 4.08
2219 4256 1.879380 GTCACTGCTGTGGTATGCAAA 59.121 47.619 21.80 0.00 43.94 3.68
2220 4257 1.879380 TCACTGCTGTGGTATGCAAAC 59.121 47.619 21.80 0.00 43.94 2.93
2221 4258 1.881973 CACTGCTGTGGTATGCAAACT 59.118 47.619 15.43 0.00 40.33 2.66
2222 4259 1.881973 ACTGCTGTGGTATGCAAACTG 59.118 47.619 0.00 0.00 38.81 3.16
2223 4260 1.881973 CTGCTGTGGTATGCAAACTGT 59.118 47.619 0.00 0.00 38.81 3.55
2224 4261 3.073678 CTGCTGTGGTATGCAAACTGTA 58.926 45.455 0.00 0.00 38.81 2.74
2225 4262 3.481453 TGCTGTGGTATGCAAACTGTAA 58.519 40.909 0.00 0.00 36.15 2.41
2226 4263 3.501828 TGCTGTGGTATGCAAACTGTAAG 59.498 43.478 0.00 0.00 36.62 2.34
2227 4264 3.670627 GCTGTGGTATGCAAACTGTAAGC 60.671 47.826 0.00 0.00 37.60 3.09
2228 4265 3.481453 TGTGGTATGCAAACTGTAAGCA 58.519 40.909 9.11 9.11 43.14 3.91
2229 4266 3.252215 TGTGGTATGCAAACTGTAAGCAC 59.748 43.478 8.90 0.00 41.60 4.40
2230 4267 3.252215 GTGGTATGCAAACTGTAAGCACA 59.748 43.478 8.90 0.00 41.60 4.57
2231 4268 3.885901 TGGTATGCAAACTGTAAGCACAA 59.114 39.130 8.90 0.00 41.60 3.33
2232 4269 4.023279 TGGTATGCAAACTGTAAGCACAAG 60.023 41.667 8.90 0.00 41.60 3.16
2233 4270 4.023193 GGTATGCAAACTGTAAGCACAAGT 60.023 41.667 8.90 0.00 41.60 3.16
2234 4271 5.180492 GGTATGCAAACTGTAAGCACAAGTA 59.820 40.000 8.90 0.00 41.60 2.24
2235 4272 5.766150 ATGCAAACTGTAAGCACAAGTAA 57.234 34.783 8.90 0.00 41.60 2.24
2251 4288 8.560374 AGCACAAGTAAAAAGTCAAATAGAGTC 58.440 33.333 0.00 0.00 0.00 3.36
2266 4303 3.990959 AGAGTCCTCTGAAACCATTCC 57.009 47.619 0.00 0.00 38.75 3.01
2495 4532 4.520874 AGAAATGCAGCTAGCTACGAGATA 59.479 41.667 18.86 0.00 45.94 1.98
2561 4870 3.686726 GGCTACAGACTGGAGAAACAATG 59.313 47.826 19.49 0.00 26.39 2.82
2606 4935 3.119316 GGTCACACCATCTCTGAGTACAG 60.119 52.174 4.32 0.00 40.68 2.74
2787 5117 0.032615 AGAAGGCACCAAAACCCACA 60.033 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 6.616893 GCAACTGTCAATACGATCGTACAAAA 60.617 38.462 28.96 10.25 33.01 2.44
171 172 1.282570 CGCCAACGCAACTGTCAAT 59.717 52.632 0.00 0.00 34.03 2.57
193 194 3.425892 GCAACTGTCAAGCATCACATCTC 60.426 47.826 0.00 0.00 0.00 2.75
195 196 2.227149 TGCAACTGTCAAGCATCACATC 59.773 45.455 0.00 0.00 32.55 3.06
203 204 3.678072 TCGTAATACTGCAACTGTCAAGC 59.322 43.478 0.00 0.00 0.00 4.01
215 217 6.653183 CATGCATTTTCTCCTCGTAATACTG 58.347 40.000 0.00 0.00 0.00 2.74
277 315 1.731720 AATGCTCGGTGCTTCTTCTC 58.268 50.000 3.53 0.00 43.37 2.87
295 442 2.731341 CGTTACACGCCAAACCACAAAA 60.731 45.455 0.00 0.00 33.65 2.44
299 1483 4.905836 CGTTACACGCCAAACCAC 57.094 55.556 0.00 0.00 33.65 4.16
311 1495 6.914757 ACTGACTCAGTAGTACAAAACGTTAC 59.085 38.462 10.13 0.00 43.46 2.50
316 1500 6.365518 GGCTTACTGACTCAGTAGTACAAAAC 59.634 42.308 16.68 1.69 45.83 2.43
317 1501 6.041182 TGGCTTACTGACTCAGTAGTACAAAA 59.959 38.462 16.68 4.13 45.83 2.44
329 1513 1.623811 TCCCAAGTGGCTTACTGACTC 59.376 52.381 0.00 0.00 40.26 3.36
330 1514 1.729586 TCCCAAGTGGCTTACTGACT 58.270 50.000 0.00 0.00 40.26 3.41
331 1515 2.038557 TCTTCCCAAGTGGCTTACTGAC 59.961 50.000 0.00 0.00 40.26 3.51
334 1518 3.118738 CGTATCTTCCCAAGTGGCTTACT 60.119 47.826 0.00 0.00 42.89 2.24
335 1519 3.118884 TCGTATCTTCCCAAGTGGCTTAC 60.119 47.826 0.00 0.00 0.00 2.34
336 1520 3.101437 TCGTATCTTCCCAAGTGGCTTA 58.899 45.455 0.00 0.00 0.00 3.09
337 1521 1.906574 TCGTATCTTCCCAAGTGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
340 1524 3.611766 ACTTCGTATCTTCCCAAGTGG 57.388 47.619 0.00 0.00 0.00 4.00
341 1525 7.201617 GGATTTAACTTCGTATCTTCCCAAGTG 60.202 40.741 0.00 0.00 0.00 3.16
342 1526 6.822170 GGATTTAACTTCGTATCTTCCCAAGT 59.178 38.462 0.00 0.00 0.00 3.16
343 1527 6.821665 TGGATTTAACTTCGTATCTTCCCAAG 59.178 38.462 0.00 0.00 0.00 3.61
345 1529 6.302535 TGGATTTAACTTCGTATCTTCCCA 57.697 37.500 0.00 0.00 0.00 4.37
346 1530 5.758784 CCTGGATTTAACTTCGTATCTTCCC 59.241 44.000 0.00 0.00 0.00 3.97
353 1624 8.562052 GTTTCTTTTCCTGGATTTAACTTCGTA 58.438 33.333 0.00 0.00 0.00 3.43
362 1633 5.541484 AGATGCTGTTTCTTTTCCTGGATTT 59.459 36.000 0.00 0.00 0.00 2.17
369 1640 3.748568 ACGAGAGATGCTGTTTCTTTTCC 59.251 43.478 0.00 0.00 0.00 3.13
375 1646 0.368227 CGCACGAGAGATGCTGTTTC 59.632 55.000 0.00 0.00 41.10 2.78
379 1650 0.867753 GTACCGCACGAGAGATGCTG 60.868 60.000 0.00 0.00 41.10 4.41
382 1653 1.135373 ACAAGTACCGCACGAGAGATG 60.135 52.381 0.00 0.00 0.00 2.90
383 1654 1.132643 GACAAGTACCGCACGAGAGAT 59.867 52.381 0.00 0.00 0.00 2.75
384 1655 0.520404 GACAAGTACCGCACGAGAGA 59.480 55.000 0.00 0.00 0.00 3.10
385 1656 0.522180 AGACAAGTACCGCACGAGAG 59.478 55.000 0.00 0.00 0.00 3.20
386 1657 0.956633 AAGACAAGTACCGCACGAGA 59.043 50.000 0.00 0.00 0.00 4.04
388 1783 2.871133 CATAAGACAAGTACCGCACGA 58.129 47.619 0.00 0.00 0.00 4.35
430 1829 0.661187 GTGTGTGTCAAGCGGCATTG 60.661 55.000 1.45 4.34 0.00 2.82
437 1836 3.570559 GAGTCTAGAGTGTGTGTCAAGC 58.429 50.000 4.36 0.00 0.00 4.01
440 1839 2.158519 TGGGAGTCTAGAGTGTGTGTCA 60.159 50.000 4.36 0.00 0.00 3.58
441 1840 2.515854 TGGGAGTCTAGAGTGTGTGTC 58.484 52.381 4.36 0.00 0.00 3.67
443 1842 3.862642 GCTTTGGGAGTCTAGAGTGTGTG 60.863 52.174 4.36 0.00 0.00 3.82
444 1843 2.300437 GCTTTGGGAGTCTAGAGTGTGT 59.700 50.000 4.36 0.00 0.00 3.72
445 1844 2.300152 TGCTTTGGGAGTCTAGAGTGTG 59.700 50.000 4.36 0.00 0.00 3.82
446 1845 2.564947 CTGCTTTGGGAGTCTAGAGTGT 59.435 50.000 4.36 0.00 0.00 3.55
450 1849 1.644509 TGCTGCTTTGGGAGTCTAGA 58.355 50.000 0.00 0.00 33.26 2.43
453 1852 0.990374 AGATGCTGCTTTGGGAGTCT 59.010 50.000 0.00 0.00 33.26 3.24
454 1853 1.065564 AGAGATGCTGCTTTGGGAGTC 60.066 52.381 0.00 0.00 33.26 3.36
457 1856 0.254178 GGAGAGATGCTGCTTTGGGA 59.746 55.000 0.00 0.00 31.32 4.37
459 1858 1.339824 ACAGGAGAGATGCTGCTTTGG 60.340 52.381 0.00 0.00 43.49 3.28
460 1859 1.738350 CACAGGAGAGATGCTGCTTTG 59.262 52.381 0.00 0.00 43.49 2.77
461 1860 1.339824 CCACAGGAGAGATGCTGCTTT 60.340 52.381 0.00 0.00 43.49 3.51
462 1861 0.252479 CCACAGGAGAGATGCTGCTT 59.748 55.000 0.00 0.00 43.49 3.91
541 1959 3.307906 TCTTCACGTGTCCCGGGG 61.308 66.667 23.50 6.77 41.51 5.73
598 2020 4.395542 AGAGCGTCCAAACTGTAGTAGTAG 59.604 45.833 0.00 0.00 39.18 2.57
599 2021 4.330250 AGAGCGTCCAAACTGTAGTAGTA 58.670 43.478 0.00 0.00 39.18 1.82
600 2022 3.155501 AGAGCGTCCAAACTGTAGTAGT 58.844 45.455 0.00 0.00 42.89 2.73
601 2023 3.427773 GGAGAGCGTCCAAACTGTAGTAG 60.428 52.174 3.41 0.00 46.10 2.57
602 2024 2.490903 GGAGAGCGTCCAAACTGTAGTA 59.509 50.000 3.41 0.00 46.10 1.82
603 2025 1.272769 GGAGAGCGTCCAAACTGTAGT 59.727 52.381 3.41 0.00 46.10 2.73
604 2026 1.997669 GGAGAGCGTCCAAACTGTAG 58.002 55.000 3.41 0.00 46.10 2.74
635 2062 3.246112 CAGGGGTTGTCGGTGGGA 61.246 66.667 0.00 0.00 0.00 4.37
709 2136 4.242475 TCTCGATTTTGTGCACGTAGAAT 58.758 39.130 13.13 9.19 0.00 2.40
712 2139 3.722082 GCTTCTCGATTTTGTGCACGTAG 60.722 47.826 13.13 0.00 0.00 3.51
714 2141 1.069906 GCTTCTCGATTTTGTGCACGT 60.070 47.619 13.13 0.00 0.00 4.49
926 2361 5.770663 GGCAGGAACAGATCAGATAGTACTA 59.229 44.000 4.77 4.77 0.00 1.82
927 2362 4.586841 GGCAGGAACAGATCAGATAGTACT 59.413 45.833 0.00 0.00 0.00 2.73
928 2363 4.586841 AGGCAGGAACAGATCAGATAGTAC 59.413 45.833 0.00 0.00 0.00 2.73
929 2364 4.809193 AGGCAGGAACAGATCAGATAGTA 58.191 43.478 0.00 0.00 0.00 1.82
930 2365 3.652055 AGGCAGGAACAGATCAGATAGT 58.348 45.455 0.00 0.00 0.00 2.12
931 2366 4.686191 AAGGCAGGAACAGATCAGATAG 57.314 45.455 0.00 0.00 0.00 2.08
932 2367 4.141620 GGAAAGGCAGGAACAGATCAGATA 60.142 45.833 0.00 0.00 0.00 1.98
933 2368 3.371380 GGAAAGGCAGGAACAGATCAGAT 60.371 47.826 0.00 0.00 0.00 2.90
934 2369 2.026822 GGAAAGGCAGGAACAGATCAGA 60.027 50.000 0.00 0.00 0.00 3.27
962 2397 1.164041 ACCAAAGTGTGTGCGCTACC 61.164 55.000 9.73 2.66 34.60 3.18
987 2422 2.163010 GTCCTCCATCACGAACGAACTA 59.837 50.000 0.14 0.00 0.00 2.24
991 2426 0.809385 GAGTCCTCCATCACGAACGA 59.191 55.000 0.14 0.00 0.00 3.85
993 2428 0.179134 CCGAGTCCTCCATCACGAAC 60.179 60.000 0.00 0.00 0.00 3.95
1045 2483 4.431131 CTTCCCCTGCGCCATGGT 62.431 66.667 14.67 0.00 0.00 3.55
1146 2584 0.609957 CCATGCTGCTGAGAAACCCA 60.610 55.000 0.00 0.00 0.00 4.51
1320 2764 1.254284 AAGGAGACGAGCTGGACAGG 61.254 60.000 1.44 0.00 0.00 4.00
1344 2788 2.298163 CAGTAACTTACCTGTGACCGGT 59.702 50.000 6.92 6.92 38.55 5.28
1349 2793 1.616865 AGCGCAGTAACTTACCTGTGA 59.383 47.619 11.47 0.00 0.00 3.58
1375 2824 0.318441 CAGAGAGTGGGCGACAAAGA 59.682 55.000 1.61 0.00 0.00 2.52
1381 2830 1.048601 AAGTTTCAGAGAGTGGGCGA 58.951 50.000 0.00 0.00 0.00 5.54
1385 2834 8.499162 CAATTACAGTAAAGTTTCAGAGAGTGG 58.501 37.037 0.00 0.00 0.00 4.00
1388 2837 9.261180 TGTCAATTACAGTAAAGTTTCAGAGAG 57.739 33.333 0.00 0.00 33.01 3.20
1403 2852 7.985162 GTTCCACGGAAGACTGTCAATTACAG 61.985 46.154 10.88 3.67 46.46 2.74
1404 2853 3.322541 TCCACGGAAGACTGTCAATTACA 59.677 43.478 10.88 0.00 36.42 2.41
1405 2854 3.921677 TCCACGGAAGACTGTCAATTAC 58.078 45.455 10.88 0.00 32.77 1.89
1406 2855 4.202274 TGTTCCACGGAAGACTGTCAATTA 60.202 41.667 10.88 0.00 34.49 1.40
1407 2856 3.139077 GTTCCACGGAAGACTGTCAATT 58.861 45.455 10.88 0.00 34.49 2.32
1408 2857 2.104111 TGTTCCACGGAAGACTGTCAAT 59.896 45.455 10.88 0.00 34.49 2.57
1427 2876 1.719378 TCCCCTTCTCTCTTCCTCTGT 59.281 52.381 0.00 0.00 0.00 3.41
1525 2974 2.819595 CCGTGAGTCCCATTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
1582 3031 1.623557 CCCATCTCCTCCTTGTCCTCA 60.624 57.143 0.00 0.00 0.00 3.86
1628 3086 4.406648 TGGACATGATCTGCTTAACGAT 57.593 40.909 0.00 0.00 0.00 3.73
1660 3118 0.330604 AGATTGGCAGTGCACCTGAT 59.669 50.000 18.61 2.59 44.49 2.90
1695 3153 0.102481 GCGACACACGAGGATATGGT 59.898 55.000 0.00 0.00 45.77 3.55
1705 3163 1.282248 AACAATCGAGGCGACACACG 61.282 55.000 0.00 0.00 39.18 4.49
1712 3171 0.095935 CAGCTGAAACAATCGAGGCG 59.904 55.000 8.42 0.00 0.00 5.52
1863 3326 2.676342 GCGATGTAAAACTACACCCAGG 59.324 50.000 0.00 0.00 32.16 4.45
1896 3359 3.087031 ACAACATCAGCATCAAGGAAGG 58.913 45.455 0.00 0.00 0.00 3.46
1900 3363 4.216042 TGTGTTACAACATCAGCATCAAGG 59.784 41.667 0.00 0.00 41.59 3.61
1945 3462 0.676466 CAATGCGGTTACAGGCCAGA 60.676 55.000 5.01 0.00 0.00 3.86
1957 3474 1.081892 CCAGTTCTCAGTCAATGCGG 58.918 55.000 0.00 0.00 0.00 5.69
1995 3518 1.798813 CACGTTCCAAGGAGTAGCAAC 59.201 52.381 0.00 0.00 0.00 4.17
2011 3537 1.946768 CTTTCCACCACATGTTCACGT 59.053 47.619 0.00 0.00 0.00 4.49
2012 3538 2.217750 TCTTTCCACCACATGTTCACG 58.782 47.619 0.00 0.00 0.00 4.35
2143 4180 9.799106 AGGCTGACAAAGTAATAATAGCATTAT 57.201 29.630 0.00 0.00 0.00 1.28
2145 4182 9.057089 GTAGGCTGACAAAGTAATAATAGCATT 57.943 33.333 0.00 0.00 0.00 3.56
2146 4183 8.432805 AGTAGGCTGACAAAGTAATAATAGCAT 58.567 33.333 0.00 0.00 0.00 3.79
2147 4184 7.792032 AGTAGGCTGACAAAGTAATAATAGCA 58.208 34.615 0.00 0.00 0.00 3.49
2148 4185 9.413048 CTAGTAGGCTGACAAAGTAATAATAGC 57.587 37.037 0.00 0.00 0.00 2.97
2149 4186 9.915629 CCTAGTAGGCTGACAAAGTAATAATAG 57.084 37.037 2.46 0.00 0.00 1.73
2167 4204 1.955080 CCGGTCTTGTAGCCTAGTAGG 59.045 57.143 12.27 12.27 38.80 3.18
2168 4205 2.617774 GTCCGGTCTTGTAGCCTAGTAG 59.382 54.545 0.00 0.00 0.00 2.57
2169 4206 2.025981 TGTCCGGTCTTGTAGCCTAGTA 60.026 50.000 0.00 0.00 0.00 1.82
2170 4207 1.272313 TGTCCGGTCTTGTAGCCTAGT 60.272 52.381 0.00 0.00 0.00 2.57
2171 4208 1.405821 CTGTCCGGTCTTGTAGCCTAG 59.594 57.143 0.00 0.00 0.00 3.02
2172 4209 1.471119 CTGTCCGGTCTTGTAGCCTA 58.529 55.000 0.00 0.00 0.00 3.93
2173 4210 1.258445 CCTGTCCGGTCTTGTAGCCT 61.258 60.000 0.00 0.00 0.00 4.58
2174 4211 1.218316 CCTGTCCGGTCTTGTAGCC 59.782 63.158 0.00 0.00 0.00 3.93
2175 4212 1.972978 ACCTGTCCGGTCTTGTAGC 59.027 57.895 0.00 0.00 44.93 3.58
2184 4221 1.202651 AGTGACTTCAAACCTGTCCGG 60.203 52.381 0.00 0.00 39.35 5.14
2185 4222 1.867233 CAGTGACTTCAAACCTGTCCG 59.133 52.381 0.00 0.00 0.00 4.79
2186 4223 1.604278 GCAGTGACTTCAAACCTGTCC 59.396 52.381 0.00 0.00 0.00 4.02
2187 4224 2.289002 CAGCAGTGACTTCAAACCTGTC 59.711 50.000 0.00 0.00 0.00 3.51
2188 4225 2.292267 CAGCAGTGACTTCAAACCTGT 58.708 47.619 0.00 0.00 0.00 4.00
2189 4226 2.292267 ACAGCAGTGACTTCAAACCTG 58.708 47.619 0.00 0.00 0.00 4.00
2190 4227 2.717639 ACAGCAGTGACTTCAAACCT 57.282 45.000 0.00 0.00 0.00 3.50
2201 4238 1.881973 AGTTTGCATACCACAGCAGTG 59.118 47.619 1.56 1.56 45.47 3.66
2202 4239 1.881973 CAGTTTGCATACCACAGCAGT 59.118 47.619 3.47 0.00 42.39 4.40
2203 4240 1.881973 ACAGTTTGCATACCACAGCAG 59.118 47.619 3.47 0.00 42.39 4.24
2204 4241 1.979855 ACAGTTTGCATACCACAGCA 58.020 45.000 3.47 0.00 39.32 4.41
2205 4242 3.670627 GCTTACAGTTTGCATACCACAGC 60.671 47.826 3.47 3.62 0.00 4.40
2206 4243 3.501828 TGCTTACAGTTTGCATACCACAG 59.498 43.478 3.47 0.00 0.00 3.66
2207 4244 3.252215 GTGCTTACAGTTTGCATACCACA 59.748 43.478 3.47 0.00 39.00 4.17
2208 4245 3.252215 TGTGCTTACAGTTTGCATACCAC 59.748 43.478 3.47 4.73 39.00 4.16
2209 4246 3.481453 TGTGCTTACAGTTTGCATACCA 58.519 40.909 3.47 0.00 39.00 3.25
2210 4247 4.023193 ACTTGTGCTTACAGTTTGCATACC 60.023 41.667 3.47 0.00 39.00 2.73
2211 4248 5.108385 ACTTGTGCTTACAGTTTGCATAC 57.892 39.130 0.00 0.00 39.00 2.39
2212 4249 6.869315 TTACTTGTGCTTACAGTTTGCATA 57.131 33.333 3.89 0.00 39.00 3.14
2213 4250 5.766150 TTACTTGTGCTTACAGTTTGCAT 57.234 34.783 3.89 0.00 39.00 3.96
2214 4251 5.568685 TTTACTTGTGCTTACAGTTTGCA 57.431 34.783 0.00 0.00 0.00 4.08
2215 4252 6.530181 ACTTTTTACTTGTGCTTACAGTTTGC 59.470 34.615 0.00 0.00 0.00 3.68
2216 4253 7.753132 TGACTTTTTACTTGTGCTTACAGTTTG 59.247 33.333 0.00 0.00 0.00 2.93
2217 4254 7.822658 TGACTTTTTACTTGTGCTTACAGTTT 58.177 30.769 0.00 0.00 0.00 2.66
2218 4255 7.385778 TGACTTTTTACTTGTGCTTACAGTT 57.614 32.000 0.00 0.00 0.00 3.16
2219 4256 6.995511 TGACTTTTTACTTGTGCTTACAGT 57.004 33.333 0.00 0.00 0.00 3.55
2220 4257 8.856490 ATTTGACTTTTTACTTGTGCTTACAG 57.144 30.769 0.00 0.00 0.00 2.74
2221 4258 9.944663 CTATTTGACTTTTTACTTGTGCTTACA 57.055 29.630 0.00 0.00 0.00 2.41
2224 4261 8.903820 ACTCTATTTGACTTTTTACTTGTGCTT 58.096 29.630 0.00 0.00 0.00 3.91
2225 4262 8.451908 ACTCTATTTGACTTTTTACTTGTGCT 57.548 30.769 0.00 0.00 0.00 4.40
2226 4263 7.803659 GGACTCTATTTGACTTTTTACTTGTGC 59.196 37.037 0.00 0.00 0.00 4.57
2227 4264 9.057089 AGGACTCTATTTGACTTTTTACTTGTG 57.943 33.333 0.00 0.00 0.00 3.33
2228 4265 9.274206 GAGGACTCTATTTGACTTTTTACTTGT 57.726 33.333 0.00 0.00 0.00 3.16
2229 4266 9.495572 AGAGGACTCTATTTGACTTTTTACTTG 57.504 33.333 0.00 0.00 38.35 3.16
2230 4267 9.495572 CAGAGGACTCTATTTGACTTTTTACTT 57.504 33.333 0.82 0.00 37.98 2.24
2231 4268 8.871125 TCAGAGGACTCTATTTGACTTTTTACT 58.129 33.333 0.82 0.00 37.98 2.24
2232 4269 9.490379 TTCAGAGGACTCTATTTGACTTTTTAC 57.510 33.333 0.82 0.00 37.98 2.01
2234 4271 8.841300 GTTTCAGAGGACTCTATTTGACTTTTT 58.159 33.333 0.82 0.00 37.98 1.94
2235 4272 7.445707 GGTTTCAGAGGACTCTATTTGACTTTT 59.554 37.037 0.82 0.00 37.98 2.27
2251 4288 4.935352 TTGTTTGGAATGGTTTCAGAGG 57.065 40.909 0.00 0.00 33.23 3.69
2266 4303 4.096231 TCTGTGTCTGTTGTCCATTGTTTG 59.904 41.667 0.00 0.00 0.00 2.93
2340 4377 3.060020 GCCGTCACTAGCAGCGGTA 62.060 63.158 17.00 0.00 45.30 4.02
2344 4381 2.048222 TGTGCCGTCACTAGCAGC 60.048 61.111 0.00 0.00 43.49 5.25
2495 4532 5.820423 TGGTATACGCATTTTGACTTATGCT 59.180 36.000 0.00 0.00 43.79 3.79
2561 4870 1.676529 TCCATCGCACTGAGTAGCTAC 59.323 52.381 16.43 16.43 0.00 3.58
2606 4935 4.591202 CAATATTCAGTCGTTGGCATGTC 58.409 43.478 0.00 0.00 0.00 3.06
2787 5117 2.764010 TCAAGCTACATGTATCGGGTGT 59.236 45.455 5.91 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.