Multiple sequence alignment - TraesCS4D01G189800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G189800 chr4D 100.000 2816 0 0 1 2816 329309821 329312636 0.000000e+00 5201.0
1 TraesCS4D01G189800 chr4A 90.185 1294 52 31 780 2055 140756461 140755225 0.000000e+00 1616.0
2 TraesCS4D01G189800 chr4A 87.900 438 17 9 22 440 140757501 140757081 1.520000e-132 483.0
3 TraesCS4D01G189800 chr4A 84.663 326 12 8 452 760 140757033 140756729 9.870000e-75 291.0
4 TraesCS4D01G189800 chr4A 86.250 80 11 0 2540 2619 270322490 270322411 1.390000e-13 87.9
5 TraesCS4D01G189800 chr4B 93.721 860 38 7 1206 2052 409339174 409340030 0.000000e+00 1275.0
6 TraesCS4D01G189800 chr4B 91.625 597 32 5 2228 2816 409340022 409340608 0.000000e+00 809.0
7 TraesCS4D01G189800 chr4B 83.582 335 22 13 894 1210 409333737 409334056 1.650000e-72 283.0
8 TraesCS4D01G189800 chr2A 83.820 377 43 13 1262 1632 45096205 45095841 2.690000e-90 342.0
9 TraesCS4D01G189800 chr2A 83.421 380 48 12 1262 1632 45085760 45085387 3.470000e-89 339.0
10 TraesCS4D01G189800 chr2D 83.065 372 52 6 1262 1632 43300847 43300486 7.520000e-86 327.0
11 TraesCS4D01G189800 chr2D 82.306 373 53 8 1262 1632 43295234 43294873 7.570000e-81 311.0
12 TraesCS4D01G189800 chr2B 81.795 390 48 17 1262 1632 68201729 68201344 3.520000e-79 305.0
13 TraesCS4D01G189800 chr2B 81.675 382 51 15 1262 1632 68207122 68206749 1.640000e-77 300.0
14 TraesCS4D01G189800 chr2B 94.972 179 8 1 2052 2229 507791934 507792112 2.140000e-71 279.0
15 TraesCS4D01G189800 chr2B 93.258 178 8 3 2052 2226 637775100 637774924 2.780000e-65 259.0
16 TraesCS4D01G189800 chr6B 94.972 179 8 1 2050 2227 684018452 684018630 2.140000e-71 279.0
17 TraesCS4D01G189800 chr6B 95.294 170 7 1 2052 2220 493510333 493510502 4.620000e-68 268.0
18 TraesCS4D01G189800 chr3A 94.944 178 7 2 2051 2227 176053895 176053719 7.680000e-71 278.0
19 TraesCS4D01G189800 chr1B 94.915 177 8 1 2052 2227 308594428 308594604 2.760000e-70 276.0
20 TraesCS4D01G189800 chr7B 94.382 178 9 1 2051 2227 133493373 133493550 3.570000e-69 272.0
21 TraesCS4D01G189800 chr7B 92.778 180 9 2 2052 2227 332797648 332797827 1.000000e-64 257.0
22 TraesCS4D01G189800 chr7D 90.270 185 18 0 2052 2236 561877521 561877705 2.800000e-60 243.0
23 TraesCS4D01G189800 chr6A 82.168 286 38 10 2336 2619 454389692 454389418 1.690000e-57 233.0
24 TraesCS4D01G189800 chr1A 84.375 160 23 2 1262 1420 133999360 133999518 3.760000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G189800 chr4D 329309821 329312636 2815 False 5201.000000 5201 100.000000 1 2816 1 chr4D.!!$F1 2815
1 TraesCS4D01G189800 chr4A 140755225 140757501 2276 True 796.666667 1616 87.582667 22 2055 3 chr4A.!!$R2 2033
2 TraesCS4D01G189800 chr4B 409339174 409340608 1434 False 1042.000000 1275 92.673000 1206 2816 2 chr4B.!!$F2 1610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 592 0.0982 CGGAGACACTGACGCGATTA 59.902 55.0 15.93 0.0 0.0 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2431 0.031817 CCCATTGCCCCTCCAAAGAT 60.032 55.0 0.0 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.241783 CTCGTCTCAGCGATACTACAC 57.758 52.381 0.00 0.00 40.29 2.90
21 22 2.867368 CTCGTCTCAGCGATACTACACT 59.133 50.000 0.00 0.00 40.29 3.55
22 23 2.864946 TCGTCTCAGCGATACTACACTC 59.135 50.000 0.00 0.00 35.83 3.51
23 24 2.608090 CGTCTCAGCGATACTACACTCA 59.392 50.000 0.00 0.00 0.00 3.41
24 25 3.248841 CGTCTCAGCGATACTACACTCAT 59.751 47.826 0.00 0.00 0.00 2.90
25 26 4.260825 CGTCTCAGCGATACTACACTCATT 60.261 45.833 0.00 0.00 0.00 2.57
26 27 5.583495 GTCTCAGCGATACTACACTCATTT 58.417 41.667 0.00 0.00 0.00 2.32
50 51 1.271379 TGGCTGAAGATTTTGCTGCTG 59.729 47.619 0.00 0.00 0.00 4.41
60 61 2.344872 TGCTGCTGCATCACGAGT 59.655 55.556 14.93 0.00 45.31 4.18
63 64 3.079941 CTGCTGCATCACGAGTGCG 62.080 63.158 1.31 0.00 45.37 5.34
98 99 2.028130 TGCATCGAACTGGGTGTTTTT 58.972 42.857 0.00 0.00 39.30 1.94
99 100 3.215151 TGCATCGAACTGGGTGTTTTTA 58.785 40.909 0.00 0.00 39.30 1.52
100 101 3.632604 TGCATCGAACTGGGTGTTTTTAA 59.367 39.130 0.00 0.00 39.30 1.52
101 102 3.978855 GCATCGAACTGGGTGTTTTTAAC 59.021 43.478 0.00 0.00 39.30 2.01
102 103 4.498345 GCATCGAACTGGGTGTTTTTAACA 60.498 41.667 0.00 0.00 39.30 2.41
175 176 3.044305 GGCGATACTGCCGGATGC 61.044 66.667 5.05 0.00 46.75 3.91
191 192 0.316772 ATGCGCTGCTAGTACGTACG 60.317 55.000 19.49 15.01 0.00 3.67
192 193 1.061570 GCGCTGCTAGTACGTACGT 59.938 57.895 25.98 25.98 0.00 3.57
193 194 1.192436 GCGCTGCTAGTACGTACGTG 61.192 60.000 30.25 14.77 0.00 4.49
194 195 1.192436 CGCTGCTAGTACGTACGTGC 61.192 60.000 30.25 28.21 0.00 5.34
231 246 0.678366 ACGATGACGACTCTGCCTCT 60.678 55.000 0.00 0.00 42.66 3.69
330 350 3.315749 GCGAGTATTGTACTGCTCCTACT 59.684 47.826 0.00 0.00 39.59 2.57
391 411 2.277756 CGTGCGTACGCTCCTACC 60.278 66.667 36.99 18.01 44.11 3.18
405 425 0.471617 CCTACCCCTCAAGATGCAGG 59.528 60.000 0.00 0.00 0.00 4.85
423 443 3.710722 CGCAGGGAAGGGAGCACT 61.711 66.667 0.00 0.00 0.00 4.40
440 460 0.681733 ACTGGATTGGATCGGATCGG 59.318 55.000 11.62 0.00 0.00 4.18
442 462 1.893137 CTGGATTGGATCGGATCGGTA 59.107 52.381 11.62 0.50 0.00 4.02
445 465 0.608640 ATTGGATCGGATCGGTAGGC 59.391 55.000 11.62 0.00 0.00 3.93
446 466 0.469331 TTGGATCGGATCGGTAGGCT 60.469 55.000 11.62 0.00 0.00 4.58
447 467 0.402887 TGGATCGGATCGGTAGGCTA 59.597 55.000 11.62 0.00 0.00 3.93
448 468 1.096416 GGATCGGATCGGTAGGCTAG 58.904 60.000 11.62 0.00 0.00 3.42
450 470 2.011222 GATCGGATCGGTAGGCTAGAG 58.989 57.143 1.62 0.00 0.00 2.43
457 513 1.767088 TCGGTAGGCTAGAGCTAGACA 59.233 52.381 12.62 0.00 43.65 3.41
501 561 4.474226 CTTTGAGAAGGAACCACTTTCG 57.526 45.455 0.00 0.00 39.18 3.46
523 583 1.444553 GTCCTTCGCGGAGACACTG 60.445 63.158 18.24 0.00 44.20 3.66
524 584 1.602605 TCCTTCGCGGAGACACTGA 60.603 57.895 18.24 0.13 36.69 3.41
525 585 1.444553 CCTTCGCGGAGACACTGAC 60.445 63.158 18.24 0.00 33.16 3.51
526 586 1.797933 CTTCGCGGAGACACTGACG 60.798 63.158 9.41 0.00 0.00 4.35
529 589 4.400109 GCGGAGACACTGACGCGA 62.400 66.667 15.93 0.00 42.66 5.87
530 590 2.485582 CGGAGACACTGACGCGAT 59.514 61.111 15.93 0.00 0.00 4.58
531 591 1.154016 CGGAGACACTGACGCGATT 60.154 57.895 15.93 0.00 0.00 3.34
532 592 0.098200 CGGAGACACTGACGCGATTA 59.902 55.000 15.93 0.00 0.00 1.75
533 593 1.268589 CGGAGACACTGACGCGATTAT 60.269 52.381 15.93 0.00 0.00 1.28
534 594 2.386249 GGAGACACTGACGCGATTATC 58.614 52.381 15.93 0.00 0.00 1.75
535 595 2.037649 GAGACACTGACGCGATTATCG 58.962 52.381 15.93 10.56 43.89 2.92
661 721 2.656560 CGAGTCCGTCTCCTTTCAAT 57.343 50.000 0.41 0.00 39.84 2.57
663 723 4.308899 CGAGTCCGTCTCCTTTCAATAT 57.691 45.455 0.41 0.00 39.84 1.28
664 724 4.291783 CGAGTCCGTCTCCTTTCAATATC 58.708 47.826 0.41 0.00 39.84 1.63
679 739 6.947903 TTCAATATCGTTTGCGTTGTACTA 57.052 33.333 0.00 0.00 39.49 1.82
680 740 6.947903 TCAATATCGTTTGCGTTGTACTAA 57.052 33.333 0.00 0.00 39.49 2.24
681 741 7.528481 TCAATATCGTTTGCGTTGTACTAAT 57.472 32.000 0.00 0.00 39.49 1.73
683 743 7.275999 TCAATATCGTTTGCGTTGTACTAATCA 59.724 33.333 0.00 0.00 39.49 2.57
710 783 1.629861 TGGCATCACATGTCTCTCCAA 59.370 47.619 0.00 0.00 35.48 3.53
744 817 1.917782 GCCCGCAGATTGTTACGCAA 61.918 55.000 0.00 0.00 41.89 4.85
747 820 1.591248 CGCAGATTGTTACGCAACAC 58.409 50.000 0.00 0.00 44.28 3.32
751 824 2.548057 CAGATTGTTACGCAACACTGGT 59.452 45.455 0.00 0.00 44.28 4.00
768 841 6.744112 ACACTGGTTGTTGTACATAAAATGG 58.256 36.000 0.00 0.00 33.09 3.16
770 843 7.232534 ACACTGGTTGTTGTACATAAAATGGAT 59.767 33.333 0.00 0.00 33.09 3.41
778 851 9.693739 TGTTGTACATAAAATGGATAATGGACT 57.306 29.630 0.00 0.00 34.79 3.85
787 1108 3.041211 TGGATAATGGACTACTGCAGCT 58.959 45.455 15.27 3.67 0.00 4.24
789 1110 2.315925 TAATGGACTACTGCAGCTGC 57.684 50.000 31.89 31.89 42.50 5.25
809 1130 0.842635 AGAGGTCTCATCCAATGGCC 59.157 55.000 0.00 0.00 0.00 5.36
810 1131 0.179006 GAGGTCTCATCCAATGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
812 1133 0.466922 GGTCTCATCCAATGGCCCAG 60.467 60.000 0.00 0.00 0.00 4.45
813 1134 0.548031 GTCTCATCCAATGGCCCAGA 59.452 55.000 0.00 0.00 0.00 3.86
814 1135 0.548031 TCTCATCCAATGGCCCAGAC 59.452 55.000 0.00 0.00 0.00 3.51
815 1136 0.256752 CTCATCCAATGGCCCAGACA 59.743 55.000 0.00 0.00 0.00 3.41
816 1137 0.256752 TCATCCAATGGCCCAGACAG 59.743 55.000 0.00 0.00 0.00 3.51
817 1138 0.256752 CATCCAATGGCCCAGACAGA 59.743 55.000 0.00 0.00 0.00 3.41
818 1139 0.257039 ATCCAATGGCCCAGACAGAC 59.743 55.000 0.00 0.00 0.00 3.51
827 1158 0.668706 CCCAGACAGACTTGACGCAG 60.669 60.000 0.00 0.00 0.00 5.18
843 1174 1.445410 CAGCTAGCGTTGCACCGTA 60.445 57.895 9.55 0.00 0.00 4.02
846 1177 1.488261 GCTAGCGTTGCACCGTATCC 61.488 60.000 5.30 0.00 0.00 2.59
859 1190 1.409064 CCGTATCCTGCACTAAGCTGA 59.591 52.381 0.00 0.00 44.15 4.26
860 1191 2.159099 CCGTATCCTGCACTAAGCTGAA 60.159 50.000 0.00 0.00 44.15 3.02
861 1192 3.521560 CGTATCCTGCACTAAGCTGAAA 58.478 45.455 0.00 0.00 44.15 2.69
862 1193 3.932710 CGTATCCTGCACTAAGCTGAAAA 59.067 43.478 0.00 0.00 44.15 2.29
868 1199 4.978580 CCTGCACTAAGCTGAAAAGAAAAC 59.021 41.667 0.00 0.00 44.15 2.43
892 1223 2.351726 GCATGTTTGCTACCGTTCCTAG 59.648 50.000 0.00 0.00 45.77 3.02
893 1224 3.596214 CATGTTTGCTACCGTTCCTAGT 58.404 45.455 0.00 0.00 0.00 2.57
895 1226 2.028748 TGTTTGCTACCGTTCCTAGTCC 60.029 50.000 0.00 0.00 0.00 3.85
897 1228 3.370840 TTGCTACCGTTCCTAGTCCTA 57.629 47.619 0.00 0.00 0.00 2.94
898 1229 3.370840 TGCTACCGTTCCTAGTCCTAA 57.629 47.619 0.00 0.00 0.00 2.69
899 1230 3.700538 TGCTACCGTTCCTAGTCCTAAA 58.299 45.455 0.00 0.00 0.00 1.85
900 1231 3.445096 TGCTACCGTTCCTAGTCCTAAAC 59.555 47.826 0.00 0.00 0.00 2.01
901 1232 3.698539 GCTACCGTTCCTAGTCCTAAACT 59.301 47.826 0.00 0.00 42.33 2.66
902 1233 4.159321 GCTACCGTTCCTAGTCCTAAACTT 59.841 45.833 0.00 0.00 39.55 2.66
903 1234 4.532314 ACCGTTCCTAGTCCTAAACTTG 57.468 45.455 0.00 0.00 39.55 3.16
916 1247 0.249741 AAACTTGGTCCCGACGACAG 60.250 55.000 0.00 0.00 43.95 3.51
928 1259 3.435327 CCCGACGACAGAAATGAAAATGA 59.565 43.478 0.00 0.00 0.00 2.57
931 1262 5.075448 CGACGACAGAAATGAAAATGACAG 58.925 41.667 0.00 0.00 0.00 3.51
932 1263 5.107491 CGACGACAGAAATGAAAATGACAGA 60.107 40.000 0.00 0.00 0.00 3.41
935 1266 8.322906 ACGACAGAAATGAAAATGACAGATAA 57.677 30.769 0.00 0.00 0.00 1.75
942 1273 9.483062 GAAATGAAAATGACAGATAAAGACTCG 57.517 33.333 0.00 0.00 0.00 4.18
943 1274 6.408858 TGAAAATGACAGATAAAGACTCGC 57.591 37.500 0.00 0.00 0.00 5.03
944 1275 6.166279 TGAAAATGACAGATAAAGACTCGCT 58.834 36.000 0.00 0.00 0.00 4.93
945 1276 7.320399 TGAAAATGACAGATAAAGACTCGCTA 58.680 34.615 0.00 0.00 0.00 4.26
946 1277 7.817478 TGAAAATGACAGATAAAGACTCGCTAA 59.183 33.333 0.00 0.00 0.00 3.09
947 1278 8.723942 AAAATGACAGATAAAGACTCGCTAAT 57.276 30.769 0.00 0.00 0.00 1.73
948 1279 7.706281 AATGACAGATAAAGACTCGCTAATG 57.294 36.000 0.00 0.00 0.00 1.90
971 1302 2.733218 GCTTCAAAAACGCGCCCC 60.733 61.111 5.73 0.00 0.00 5.80
973 1304 3.889831 CTTCAAAAACGCGCCCCCG 62.890 63.158 5.73 0.00 37.57 5.73
992 1323 1.078497 CCAGGGATAAGCACGCACA 60.078 57.895 0.00 0.00 0.00 4.57
993 1324 1.091771 CCAGGGATAAGCACGCACAG 61.092 60.000 0.00 0.00 0.00 3.66
994 1325 0.391661 CAGGGATAAGCACGCACAGT 60.392 55.000 0.00 0.00 0.00 3.55
995 1326 1.134818 CAGGGATAAGCACGCACAGTA 60.135 52.381 0.00 0.00 0.00 2.74
997 1328 1.136305 GGGATAAGCACGCACAGTAGA 59.864 52.381 0.00 0.00 0.00 2.59
998 1329 2.418197 GGGATAAGCACGCACAGTAGAA 60.418 50.000 0.00 0.00 0.00 2.10
999 1330 3.259064 GGATAAGCACGCACAGTAGAAA 58.741 45.455 0.00 0.00 0.00 2.52
1000 1331 3.682858 GGATAAGCACGCACAGTAGAAAA 59.317 43.478 0.00 0.00 0.00 2.29
1001 1332 4.332819 GGATAAGCACGCACAGTAGAAAAT 59.667 41.667 0.00 0.00 0.00 1.82
1002 1333 3.542712 AAGCACGCACAGTAGAAAATG 57.457 42.857 0.00 0.00 0.00 2.32
1003 1334 1.806542 AGCACGCACAGTAGAAAATGG 59.193 47.619 0.00 0.00 0.00 3.16
1004 1335 1.135689 GCACGCACAGTAGAAAATGGG 60.136 52.381 0.00 0.00 0.00 4.00
1005 1336 1.135689 CACGCACAGTAGAAAATGGGC 60.136 52.381 0.00 0.00 42.54 5.36
1006 1337 1.164411 CGCACAGTAGAAAATGGGCA 58.836 50.000 0.83 0.00 46.39 5.36
1007 1338 1.745087 CGCACAGTAGAAAATGGGCAT 59.255 47.619 0.83 0.00 46.39 4.40
1008 1339 2.164219 CGCACAGTAGAAAATGGGCATT 59.836 45.455 0.83 0.00 46.39 3.56
1009 1340 3.731867 CGCACAGTAGAAAATGGGCATTC 60.732 47.826 0.83 0.00 46.39 2.67
1010 1341 3.429410 GCACAGTAGAAAATGGGCATTCC 60.429 47.826 0.00 0.00 45.36 3.01
1011 1342 4.019174 CACAGTAGAAAATGGGCATTCCT 58.981 43.478 0.00 0.00 36.20 3.36
1012 1343 5.192927 CACAGTAGAAAATGGGCATTCCTA 58.807 41.667 0.00 0.00 36.20 2.94
1081 1412 0.391395 CAGTCTCCAGCAGCTCCAAG 60.391 60.000 0.00 0.00 0.00 3.61
1104 1435 1.987807 AATCCATCGCCTCCACCAGG 61.988 60.000 0.00 0.00 46.82 4.45
1164 1495 0.739112 CGACCTCTCCTTCAAGCAGC 60.739 60.000 0.00 0.00 0.00 5.25
1166 1497 1.449246 CCTCTCCTTCAAGCAGCGG 60.449 63.158 0.00 0.00 0.00 5.52
1448 1791 0.319641 AACGCCGAGTTCAGGTTCTC 60.320 55.000 0.00 0.00 39.16 2.87
1496 1839 4.271816 CGTCATCGCCGAGGGGAG 62.272 72.222 14.17 7.06 40.35 4.30
1497 1840 4.593864 GTCATCGCCGAGGGGAGC 62.594 72.222 14.17 4.24 40.35 4.70
1698 2050 2.231540 CTTCCTCCCCCTCCTCGTCT 62.232 65.000 0.00 0.00 0.00 4.18
1821 2173 2.738643 CGTCCTCGCCATCTAACAACAT 60.739 50.000 0.00 0.00 0.00 2.71
1822 2174 2.609459 GTCCTCGCCATCTAACAACATG 59.391 50.000 0.00 0.00 0.00 3.21
1823 2175 2.499693 TCCTCGCCATCTAACAACATGA 59.500 45.455 0.00 0.00 0.00 3.07
1942 2298 3.104766 CTGCTACTGCGGCAATGG 58.895 61.111 3.44 0.00 43.34 3.16
2002 2361 0.742505 CTTGGGCAATGTGCGATGAT 59.257 50.000 0.00 0.00 46.21 2.45
2052 2411 2.092158 TGTTTCCTTGGTGTCATGACCA 60.092 45.455 22.85 12.68 44.64 4.02
2055 2414 1.072173 TCCTTGGTGTCATGACCAGTG 59.928 52.381 22.85 11.32 46.80 3.66
2056 2415 1.527034 CTTGGTGTCATGACCAGTGG 58.473 55.000 22.85 7.91 46.80 4.00
2057 2416 0.537143 TTGGTGTCATGACCAGTGGC 60.537 55.000 22.85 2.56 46.80 5.01
2058 2417 2.034879 GGTGTCATGACCAGTGGCG 61.035 63.158 22.85 0.00 35.88 5.69
2059 2418 2.034879 GTGTCATGACCAGTGGCGG 61.035 63.158 22.85 0.00 0.00 6.13
2060 2419 2.213513 TGTCATGACCAGTGGCGGA 61.214 57.895 22.85 0.00 0.00 5.54
2061 2420 1.448540 GTCATGACCAGTGGCGGAG 60.449 63.158 15.31 0.00 0.00 4.63
2074 2433 4.464262 CGGAGCTTGGGCCTAATC 57.536 61.111 0.33 0.00 39.73 1.75
2075 2434 1.832912 CGGAGCTTGGGCCTAATCT 59.167 57.895 4.70 4.70 39.73 2.40
2076 2435 0.181350 CGGAGCTTGGGCCTAATCTT 59.819 55.000 6.66 0.00 39.73 2.40
2077 2436 1.408822 CGGAGCTTGGGCCTAATCTTT 60.409 52.381 6.66 0.00 39.73 2.52
2078 2437 2.027385 GGAGCTTGGGCCTAATCTTTG 58.973 52.381 6.66 0.00 39.73 2.77
2079 2438 2.027385 GAGCTTGGGCCTAATCTTTGG 58.973 52.381 6.66 0.00 39.73 3.28
2080 2439 1.640670 AGCTTGGGCCTAATCTTTGGA 59.359 47.619 0.33 0.00 39.73 3.53
2081 2440 2.027385 GCTTGGGCCTAATCTTTGGAG 58.973 52.381 0.33 0.00 0.00 3.86
2082 2441 2.659428 CTTGGGCCTAATCTTTGGAGG 58.341 52.381 0.33 0.00 0.00 4.30
2083 2442 0.926293 TGGGCCTAATCTTTGGAGGG 59.074 55.000 4.53 0.00 0.00 4.30
2084 2443 0.186143 GGGCCTAATCTTTGGAGGGG 59.814 60.000 0.84 0.00 0.00 4.79
2085 2444 0.468214 GGCCTAATCTTTGGAGGGGC 60.468 60.000 0.00 0.00 35.30 5.80
2086 2445 0.258774 GCCTAATCTTTGGAGGGGCA 59.741 55.000 0.00 0.00 35.74 5.36
2087 2446 1.341976 GCCTAATCTTTGGAGGGGCAA 60.342 52.381 0.00 0.00 35.74 4.52
2088 2447 2.690936 GCCTAATCTTTGGAGGGGCAAT 60.691 50.000 0.00 0.00 35.74 3.56
2089 2448 2.961062 CCTAATCTTTGGAGGGGCAATG 59.039 50.000 0.00 0.00 0.00 2.82
2090 2449 1.870064 AATCTTTGGAGGGGCAATGG 58.130 50.000 0.00 0.00 0.00 3.16
2091 2450 0.031817 ATCTTTGGAGGGGCAATGGG 60.032 55.000 0.00 0.00 0.00 4.00
2092 2451 2.284552 TTTGGAGGGGCAATGGGC 60.285 61.111 0.00 0.00 43.74 5.36
2093 2452 2.810488 CTTTGGAGGGGCAATGGGCT 62.810 60.000 0.00 0.00 44.01 5.19
2094 2453 1.513975 TTTGGAGGGGCAATGGGCTA 61.514 55.000 0.00 0.00 44.01 3.93
2095 2454 1.513975 TTGGAGGGGCAATGGGCTAA 61.514 55.000 0.00 0.00 44.01 3.09
2096 2455 1.152673 GGAGGGGCAATGGGCTAAG 60.153 63.158 0.00 0.00 44.01 2.18
2097 2456 1.152673 GAGGGGCAATGGGCTAAGG 60.153 63.158 0.00 0.00 44.01 2.69
2098 2457 1.622442 AGGGGCAATGGGCTAAGGA 60.622 57.895 0.00 0.00 44.01 3.36
2099 2458 1.152673 GGGGCAATGGGCTAAGGAG 60.153 63.158 0.00 0.00 44.01 3.69
2100 2459 1.152673 GGGCAATGGGCTAAGGAGG 60.153 63.158 0.00 0.00 44.01 4.30
2101 2460 1.152673 GGCAATGGGCTAAGGAGGG 60.153 63.158 0.00 0.00 44.01 4.30
2102 2461 1.152673 GCAATGGGCTAAGGAGGGG 60.153 63.158 0.00 0.00 40.25 4.79
2103 2462 1.152673 CAATGGGCTAAGGAGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
2104 2463 1.622442 AATGGGCTAAGGAGGGGCA 60.622 57.895 0.00 0.00 0.00 5.36
2105 2464 1.221213 AATGGGCTAAGGAGGGGCAA 61.221 55.000 0.00 0.00 0.00 4.52
2106 2465 1.221213 ATGGGCTAAGGAGGGGCAAA 61.221 55.000 0.00 0.00 0.00 3.68
2107 2466 1.386550 GGGCTAAGGAGGGGCAAAA 59.613 57.895 0.00 0.00 0.00 2.44
2108 2467 0.970937 GGGCTAAGGAGGGGCAAAAC 60.971 60.000 0.00 0.00 0.00 2.43
2109 2468 0.039764 GGCTAAGGAGGGGCAAAACT 59.960 55.000 0.00 0.00 0.00 2.66
2110 2469 1.283905 GGCTAAGGAGGGGCAAAACTA 59.716 52.381 0.00 0.00 0.00 2.24
2111 2470 2.366533 GCTAAGGAGGGGCAAAACTAC 58.633 52.381 0.00 0.00 0.00 2.73
2112 2471 2.629051 CTAAGGAGGGGCAAAACTACG 58.371 52.381 0.00 0.00 0.00 3.51
2113 2472 1.061546 AAGGAGGGGCAAAACTACGA 58.938 50.000 0.00 0.00 0.00 3.43
2114 2473 0.613777 AGGAGGGGCAAAACTACGAG 59.386 55.000 0.00 0.00 0.00 4.18
2115 2474 0.392595 GGAGGGGCAAAACTACGAGG 60.393 60.000 0.00 0.00 0.00 4.63
2116 2475 0.323957 GAGGGGCAAAACTACGAGGT 59.676 55.000 0.00 0.00 0.00 3.85
2117 2476 0.769247 AGGGGCAAAACTACGAGGTT 59.231 50.000 0.00 0.00 0.00 3.50
2118 2477 1.144298 AGGGGCAAAACTACGAGGTTT 59.856 47.619 0.00 0.00 35.04 3.27
2119 2478 2.372837 AGGGGCAAAACTACGAGGTTTA 59.627 45.455 9.87 0.00 31.70 2.01
2120 2479 2.745821 GGGGCAAAACTACGAGGTTTAG 59.254 50.000 9.87 0.00 31.70 1.85
2121 2480 2.161012 GGGCAAAACTACGAGGTTTAGC 59.839 50.000 9.87 9.50 31.70 3.09
2122 2481 2.161012 GGCAAAACTACGAGGTTTAGCC 59.839 50.000 15.47 15.47 39.75 3.93
2137 2496 6.139048 GGTTTAGCCTGTTTTTACTGAACA 57.861 37.500 0.00 0.00 35.81 3.18
2138 2497 6.745116 GGTTTAGCCTGTTTTTACTGAACAT 58.255 36.000 0.00 0.00 36.51 2.71
2139 2498 6.861572 GGTTTAGCCTGTTTTTACTGAACATC 59.138 38.462 0.00 0.00 36.51 3.06
2140 2499 6.569179 TTAGCCTGTTTTTACTGAACATCC 57.431 37.500 0.00 0.00 36.51 3.51
2141 2500 4.469657 AGCCTGTTTTTACTGAACATCCA 58.530 39.130 0.00 0.00 36.51 3.41
2142 2501 4.520492 AGCCTGTTTTTACTGAACATCCAG 59.480 41.667 0.00 0.00 36.51 3.86
2143 2502 4.798574 CCTGTTTTTACTGAACATCCAGC 58.201 43.478 0.00 0.00 36.51 4.85
2144 2503 4.278170 CCTGTTTTTACTGAACATCCAGCA 59.722 41.667 0.00 0.00 36.51 4.41
2145 2504 5.181690 TGTTTTTACTGAACATCCAGCAC 57.818 39.130 0.00 0.00 37.68 4.40
2146 2505 4.642437 TGTTTTTACTGAACATCCAGCACA 59.358 37.500 0.00 0.00 37.68 4.57
2147 2506 5.126222 TGTTTTTACTGAACATCCAGCACAA 59.874 36.000 0.00 0.00 37.68 3.33
2148 2507 5.843673 TTTTACTGAACATCCAGCACAAA 57.156 34.783 0.00 0.00 37.68 2.83
2149 2508 5.843673 TTTACTGAACATCCAGCACAAAA 57.156 34.783 0.00 0.00 37.68 2.44
2150 2509 5.843673 TTACTGAACATCCAGCACAAAAA 57.156 34.783 0.00 0.00 37.68 1.94
2151 2510 4.045636 ACTGAACATCCAGCACAAAAAC 57.954 40.909 0.00 0.00 37.68 2.43
2152 2511 3.701040 ACTGAACATCCAGCACAAAAACT 59.299 39.130 0.00 0.00 37.68 2.66
2153 2512 4.887071 ACTGAACATCCAGCACAAAAACTA 59.113 37.500 0.00 0.00 37.68 2.24
2154 2513 5.359576 ACTGAACATCCAGCACAAAAACTAA 59.640 36.000 0.00 0.00 37.68 2.24
2155 2514 5.587289 TGAACATCCAGCACAAAAACTAAC 58.413 37.500 0.00 0.00 0.00 2.34
2156 2515 5.126222 TGAACATCCAGCACAAAAACTAACA 59.874 36.000 0.00 0.00 0.00 2.41
2157 2516 5.789643 ACATCCAGCACAAAAACTAACAT 57.210 34.783 0.00 0.00 0.00 2.71
2158 2517 5.531634 ACATCCAGCACAAAAACTAACATG 58.468 37.500 0.00 0.00 0.00 3.21
2159 2518 5.068987 ACATCCAGCACAAAAACTAACATGT 59.931 36.000 0.00 0.00 0.00 3.21
2160 2519 6.264292 ACATCCAGCACAAAAACTAACATGTA 59.736 34.615 0.00 0.00 0.00 2.29
2161 2520 6.892658 TCCAGCACAAAAACTAACATGTAT 57.107 33.333 0.00 0.00 0.00 2.29
2162 2521 7.283625 TCCAGCACAAAAACTAACATGTATT 57.716 32.000 0.00 0.00 0.00 1.89
2163 2522 8.397575 TCCAGCACAAAAACTAACATGTATTA 57.602 30.769 0.00 0.00 0.00 0.98
2164 2523 9.019656 TCCAGCACAAAAACTAACATGTATTAT 57.980 29.630 0.00 0.00 0.00 1.28
2165 2524 9.075519 CCAGCACAAAAACTAACATGTATTATG 57.924 33.333 0.00 0.97 0.00 1.90
2166 2525 9.624697 CAGCACAAAAACTAACATGTATTATGT 57.375 29.630 0.00 1.55 0.00 2.29
2167 2526 9.624697 AGCACAAAAACTAACATGTATTATGTG 57.375 29.630 19.31 19.31 31.80 3.21
2168 2527 9.619316 GCACAAAAACTAACATGTATTATGTGA 57.381 29.630 23.33 0.00 31.80 3.58
2180 2539 9.874205 ACATGTATTATGTGAATTTTTCTTGGG 57.126 29.630 0.00 0.00 0.00 4.12
2181 2540 8.819974 CATGTATTATGTGAATTTTTCTTGGGC 58.180 33.333 0.00 0.00 0.00 5.36
2182 2541 8.133024 TGTATTATGTGAATTTTTCTTGGGCT 57.867 30.769 0.00 0.00 0.00 5.19
2183 2542 8.034215 TGTATTATGTGAATTTTTCTTGGGCTG 58.966 33.333 0.00 0.00 0.00 4.85
2184 2543 3.749665 TGTGAATTTTTCTTGGGCTGG 57.250 42.857 0.00 0.00 0.00 4.85
2185 2544 2.368221 TGTGAATTTTTCTTGGGCTGGG 59.632 45.455 0.00 0.00 0.00 4.45
2186 2545 1.977129 TGAATTTTTCTTGGGCTGGGG 59.023 47.619 0.00 0.00 0.00 4.96
2187 2546 1.278985 GAATTTTTCTTGGGCTGGGGG 59.721 52.381 0.00 0.00 0.00 5.40
2188 2547 0.491371 ATTTTTCTTGGGCTGGGGGA 59.509 50.000 0.00 0.00 0.00 4.81
2189 2548 0.178935 TTTTTCTTGGGCTGGGGGAG 60.179 55.000 0.00 0.00 0.00 4.30
2214 2573 2.444696 CCAGGTTGGGCCCATGAA 59.555 61.111 29.23 8.29 38.26 2.57
2215 2574 1.683365 CCAGGTTGGGCCCATGAAG 60.683 63.158 29.23 16.34 38.26 3.02
2216 2575 1.683365 CAGGTTGGGCCCATGAAGG 60.683 63.158 29.23 11.07 38.26 3.46
2217 2576 2.169810 AGGTTGGGCCCATGAAGGT 61.170 57.895 29.23 4.35 38.26 3.50
2218 2577 1.682344 GGTTGGGCCCATGAAGGTC 60.682 63.158 29.23 9.99 34.66 3.85
2223 2582 4.424711 GCCCATGAAGGTCCGCCA 62.425 66.667 0.00 0.00 37.19 5.69
2224 2583 2.438434 CCCATGAAGGTCCGCCAC 60.438 66.667 0.00 0.00 37.19 5.01
2225 2584 2.671070 CCATGAAGGTCCGCCACT 59.329 61.111 0.00 0.00 37.19 4.00
2226 2585 1.746615 CCATGAAGGTCCGCCACTG 60.747 63.158 0.00 0.00 37.19 3.66
2227 2586 1.746615 CATGAAGGTCCGCCACTGG 60.747 63.158 0.00 0.00 37.19 4.00
2228 2587 2.224159 ATGAAGGTCCGCCACTGGT 61.224 57.895 0.00 0.00 37.19 4.00
2229 2588 2.047179 GAAGGTCCGCCACTGGTC 60.047 66.667 0.00 0.00 37.19 4.02
2230 2589 2.847234 AAGGTCCGCCACTGGTCA 60.847 61.111 0.00 0.00 37.19 4.02
2231 2590 2.185310 GAAGGTCCGCCACTGGTCAT 62.185 60.000 0.00 0.00 37.19 3.06
2232 2591 2.436646 GGTCCGCCACTGGTCATG 60.437 66.667 0.00 0.00 34.09 3.07
2233 2592 2.662596 GTCCGCCACTGGTCATGA 59.337 61.111 0.00 0.00 0.00 3.07
2234 2593 1.741770 GTCCGCCACTGGTCATGAC 60.742 63.158 17.91 17.91 0.00 3.06
2279 2638 8.277918 AGCTACTCCCTCTTAATTTGATTTGAT 58.722 33.333 0.00 0.00 0.00 2.57
2309 2668 5.560966 TGAAAACTTGTTGAGTCAGGAAC 57.439 39.130 0.00 0.00 37.72 3.62
2353 2713 3.207778 TCGAACGGACAAGGATTTTGTT 58.792 40.909 0.00 0.00 31.96 2.83
2365 2725 5.262588 AGGATTTTGTTCGCTTTTTGTCT 57.737 34.783 0.00 0.00 0.00 3.41
2372 2732 1.593196 TCGCTTTTTGTCTGTCTGGG 58.407 50.000 0.00 0.00 0.00 4.45
2376 2736 2.561569 CTTTTTGTCTGTCTGGGTCGT 58.438 47.619 0.00 0.00 0.00 4.34
2389 2749 2.728383 GTCGTCCGTCCGTGTGTG 60.728 66.667 0.00 0.00 0.00 3.82
2397 2764 1.881252 GTCCGTGTGTGCGTGTCTT 60.881 57.895 0.00 0.00 0.00 3.01
2422 2789 3.905437 TTTGGGTAGGCCGGTTCGC 62.905 63.158 1.90 0.41 34.97 4.70
2462 2829 0.241749 TTTAGACATGTCCGCGTCGT 59.758 50.000 22.21 4.50 37.23 4.34
2471 2838 1.798725 TCCGCGTCGTCATTTCGTC 60.799 57.895 4.92 0.00 0.00 4.20
2472 2839 2.308809 CGCGTCGTCATTTCGTCG 59.691 61.111 0.00 0.00 42.71 5.12
2568 2935 2.606519 ACCCCGACCTTGCTGCTA 60.607 61.111 0.00 0.00 0.00 3.49
2573 2940 2.820037 GACCTTGCTGCTACCGCC 60.820 66.667 0.00 0.00 34.43 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.867368 AGTGTAGTATCGCTGAGACGAG 59.133 50.000 5.38 0.00 46.69 4.18
2 3 2.608090 TGAGTGTAGTATCGCTGAGACG 59.392 50.000 0.00 0.00 0.00 4.18
3 4 4.822036 ATGAGTGTAGTATCGCTGAGAC 57.178 45.455 0.00 0.00 0.00 3.36
5 6 6.754209 AGAAAAATGAGTGTAGTATCGCTGAG 59.246 38.462 0.00 0.00 0.00 3.35
6 7 6.531594 CAGAAAAATGAGTGTAGTATCGCTGA 59.468 38.462 0.00 0.00 0.00 4.26
7 8 6.237942 CCAGAAAAATGAGTGTAGTATCGCTG 60.238 42.308 0.00 0.00 0.00 5.18
8 9 5.812642 CCAGAAAAATGAGTGTAGTATCGCT 59.187 40.000 0.00 0.00 0.00 4.93
9 10 5.502544 GCCAGAAAAATGAGTGTAGTATCGC 60.503 44.000 0.00 0.00 0.00 4.58
10 11 5.812642 AGCCAGAAAAATGAGTGTAGTATCG 59.187 40.000 0.00 0.00 0.00 2.92
11 12 6.818644 TCAGCCAGAAAAATGAGTGTAGTATC 59.181 38.462 0.00 0.00 0.00 2.24
12 13 6.711277 TCAGCCAGAAAAATGAGTGTAGTAT 58.289 36.000 0.00 0.00 0.00 2.12
13 14 6.109156 TCAGCCAGAAAAATGAGTGTAGTA 57.891 37.500 0.00 0.00 0.00 1.82
14 15 4.973168 TCAGCCAGAAAAATGAGTGTAGT 58.027 39.130 0.00 0.00 0.00 2.73
15 16 5.702670 TCTTCAGCCAGAAAAATGAGTGTAG 59.297 40.000 0.00 0.00 35.40 2.74
16 17 5.620206 TCTTCAGCCAGAAAAATGAGTGTA 58.380 37.500 0.00 0.00 35.40 2.90
17 18 4.464008 TCTTCAGCCAGAAAAATGAGTGT 58.536 39.130 0.00 0.00 35.40 3.55
18 19 5.640189 ATCTTCAGCCAGAAAAATGAGTG 57.360 39.130 0.00 0.00 35.40 3.51
19 20 6.661304 AAATCTTCAGCCAGAAAAATGAGT 57.339 33.333 0.00 0.00 35.40 3.41
20 21 6.128634 GCAAAATCTTCAGCCAGAAAAATGAG 60.129 38.462 0.00 0.00 35.40 2.90
21 22 5.697633 GCAAAATCTTCAGCCAGAAAAATGA 59.302 36.000 0.00 0.00 35.40 2.57
22 23 5.699458 AGCAAAATCTTCAGCCAGAAAAATG 59.301 36.000 0.00 0.00 35.40 2.32
23 24 5.699458 CAGCAAAATCTTCAGCCAGAAAAAT 59.301 36.000 0.00 0.00 35.40 1.82
24 25 5.051816 CAGCAAAATCTTCAGCCAGAAAAA 58.948 37.500 0.00 0.00 35.40 1.94
25 26 4.624015 CAGCAAAATCTTCAGCCAGAAAA 58.376 39.130 0.00 0.00 35.40 2.29
26 27 3.553508 GCAGCAAAATCTTCAGCCAGAAA 60.554 43.478 0.00 0.00 35.40 2.52
50 51 4.152625 GGTGCGCACTCGTGATGC 62.153 66.667 36.84 16.30 39.81 3.91
55 56 4.539083 TGGTTGGTGCGCACTCGT 62.539 61.111 36.84 0.00 38.14 4.18
56 57 3.276091 TTGGTTGGTGCGCACTCG 61.276 61.111 36.84 0.00 39.07 4.18
60 61 2.130426 ATTGGTTGGTTGGTGCGCA 61.130 52.632 5.66 5.66 0.00 6.09
63 64 0.035176 ATGCATTGGTTGGTTGGTGC 59.965 50.000 0.00 0.00 0.00 5.01
98 99 4.079253 GAGGAGGAGCAAAAATGGTGTTA 58.921 43.478 0.00 0.00 0.00 2.41
99 100 2.893489 GAGGAGGAGCAAAAATGGTGTT 59.107 45.455 0.00 0.00 0.00 3.32
100 101 2.519013 GAGGAGGAGCAAAAATGGTGT 58.481 47.619 0.00 0.00 0.00 4.16
101 102 1.821136 GGAGGAGGAGCAAAAATGGTG 59.179 52.381 0.00 0.00 0.00 4.17
102 103 1.713078 AGGAGGAGGAGCAAAAATGGT 59.287 47.619 0.00 0.00 0.00 3.55
103 104 2.373224 GAGGAGGAGGAGCAAAAATGG 58.627 52.381 0.00 0.00 0.00 3.16
104 105 2.025510 AGGAGGAGGAGGAGCAAAAATG 60.026 50.000 0.00 0.00 0.00 2.32
105 106 2.282900 AGGAGGAGGAGGAGCAAAAAT 58.717 47.619 0.00 0.00 0.00 1.82
106 107 1.747444 AGGAGGAGGAGGAGCAAAAA 58.253 50.000 0.00 0.00 0.00 1.94
107 108 1.747444 AAGGAGGAGGAGGAGCAAAA 58.253 50.000 0.00 0.00 0.00 2.44
108 109 1.630878 GAAAGGAGGAGGAGGAGCAAA 59.369 52.381 0.00 0.00 0.00 3.68
109 110 1.280457 GAAAGGAGGAGGAGGAGCAA 58.720 55.000 0.00 0.00 0.00 3.91
110 111 0.618968 GGAAAGGAGGAGGAGGAGCA 60.619 60.000 0.00 0.00 0.00 4.26
161 162 2.029666 AGCGCATCCGGCAGTATC 59.970 61.111 11.47 0.00 45.17 2.24
168 169 1.661821 GTACTAGCAGCGCATCCGG 60.662 63.158 11.47 0.00 34.32 5.14
175 176 1.192436 GCACGTACGTACTAGCAGCG 61.192 60.000 22.34 13.92 0.00 5.18
238 253 3.151906 CAATCGGGGGAGGCCTAG 58.848 66.667 4.42 0.00 0.00 3.02
239 254 3.168528 GCAATCGGGGGAGGCCTA 61.169 66.667 4.42 0.00 0.00 3.93
317 332 0.895530 TGGCACAGTAGGAGCAGTAC 59.104 55.000 0.00 0.00 0.00 2.73
383 403 0.107643 GCATCTTGAGGGGTAGGAGC 59.892 60.000 0.00 0.00 0.00 4.70
391 411 3.207669 GCGCCTGCATCTTGAGGG 61.208 66.667 0.00 0.00 42.15 4.30
423 443 1.893137 CTACCGATCCGATCCAATCCA 59.107 52.381 2.69 0.00 0.00 3.41
440 460 2.288458 CGTGTGTCTAGCTCTAGCCTAC 59.712 54.545 0.00 0.00 43.38 3.18
442 462 1.065345 TCGTGTGTCTAGCTCTAGCCT 60.065 52.381 0.00 0.00 43.38 4.58
445 465 3.242903 CCATGTCGTGTGTCTAGCTCTAG 60.243 52.174 0.00 0.00 34.56 2.43
446 466 2.683362 CCATGTCGTGTGTCTAGCTCTA 59.317 50.000 0.00 0.00 0.00 2.43
447 467 1.474478 CCATGTCGTGTGTCTAGCTCT 59.526 52.381 0.00 0.00 0.00 4.09
448 468 1.914634 CCATGTCGTGTGTCTAGCTC 58.085 55.000 0.00 0.00 0.00 4.09
450 470 1.413767 CGCCATGTCGTGTGTCTAGC 61.414 60.000 0.00 0.00 0.00 3.42
501 561 3.437795 TCTCCGCGAAGGACCGAC 61.438 66.667 8.23 0.00 45.98 4.79
527 587 2.805353 CGGAGGCGGCGATAATCG 60.805 66.667 12.98 3.15 43.89 3.34
528 588 3.112709 GCGGAGGCGGCGATAATC 61.113 66.667 12.98 1.34 0.00 1.75
529 589 3.575351 GAGCGGAGGCGGCGATAAT 62.575 63.158 12.98 0.00 46.35 1.28
530 590 4.280494 GAGCGGAGGCGGCGATAA 62.280 66.667 12.98 0.00 46.35 1.75
619 679 0.033504 GCCGTCACTTGTCAGAAGGA 59.966 55.000 0.00 0.00 35.74 3.36
646 706 4.730949 AACGATATTGAAAGGAGACGGA 57.269 40.909 0.00 0.00 0.00 4.69
649 709 4.092968 ACGCAAACGATATTGAAAGGAGAC 59.907 41.667 0.00 0.00 43.93 3.36
661 721 5.005012 GCTGATTAGTACAACGCAAACGATA 59.995 40.000 0.00 0.00 43.93 2.92
663 723 3.122278 GCTGATTAGTACAACGCAAACGA 59.878 43.478 0.00 0.00 43.93 3.85
744 817 6.547880 TCCATTTTATGTACAACAACCAGTGT 59.452 34.615 0.00 0.00 44.64 3.55
760 833 7.175641 GCTGCAGTAGTCCATTATCCATTTTAT 59.824 37.037 16.64 0.00 0.00 1.40
762 835 5.300286 GCTGCAGTAGTCCATTATCCATTTT 59.700 40.000 16.64 0.00 0.00 1.82
763 836 4.823989 GCTGCAGTAGTCCATTATCCATTT 59.176 41.667 16.64 0.00 0.00 2.32
764 837 4.103785 AGCTGCAGTAGTCCATTATCCATT 59.896 41.667 16.64 0.00 0.00 3.16
765 838 3.649981 AGCTGCAGTAGTCCATTATCCAT 59.350 43.478 16.64 0.00 0.00 3.41
766 839 3.041211 AGCTGCAGTAGTCCATTATCCA 58.959 45.455 16.64 0.00 0.00 3.41
767 840 3.397482 CAGCTGCAGTAGTCCATTATCC 58.603 50.000 16.64 0.00 0.00 2.59
768 841 2.805099 GCAGCTGCAGTAGTCCATTATC 59.195 50.000 33.36 0.00 41.59 1.75
770 843 2.315925 GCAGCTGCAGTAGTCCATTA 57.684 50.000 33.36 0.00 41.59 1.90
787 1108 1.211212 CCATTGGATGAGACCTCTGCA 59.789 52.381 0.00 0.00 0.00 4.41
789 1110 1.476471 GGCCATTGGATGAGACCTCTG 60.476 57.143 6.95 0.00 0.00 3.35
809 1130 1.287730 GCTGCGTCAAGTCTGTCTGG 61.288 60.000 0.00 0.00 0.00 3.86
810 1131 0.319383 AGCTGCGTCAAGTCTGTCTG 60.319 55.000 0.00 0.00 0.00 3.51
812 1133 1.623359 CTAGCTGCGTCAAGTCTGTC 58.377 55.000 0.00 0.00 0.00 3.51
813 1134 0.389166 GCTAGCTGCGTCAAGTCTGT 60.389 55.000 7.70 0.00 0.00 3.41
814 1135 2.367844 GCTAGCTGCGTCAAGTCTG 58.632 57.895 7.70 0.00 0.00 3.51
815 1136 4.900154 GCTAGCTGCGTCAAGTCT 57.100 55.556 7.70 0.00 0.00 3.24
827 1158 1.488261 GGATACGGTGCAACGCTAGC 61.488 60.000 26.87 17.69 38.12 3.42
843 1174 4.292186 TCTTTTCAGCTTAGTGCAGGAT 57.708 40.909 0.00 0.00 45.94 3.24
846 1177 5.456822 GTGTTTTCTTTTCAGCTTAGTGCAG 59.543 40.000 0.00 0.00 45.94 4.41
868 1199 0.237235 AACGGTAGCAAACATGCGTG 59.763 50.000 3.82 3.82 40.27 5.34
881 1212 4.463891 CCAAGTTTAGGACTAGGAACGGTA 59.536 45.833 0.00 0.00 37.72 4.02
886 1217 3.842436 GGGACCAAGTTTAGGACTAGGAA 59.158 47.826 0.00 0.00 37.72 3.36
892 1223 1.670967 CGTCGGGACCAAGTTTAGGAC 60.671 57.143 0.00 0.00 0.00 3.85
893 1224 0.604578 CGTCGGGACCAAGTTTAGGA 59.395 55.000 0.00 0.00 0.00 2.94
895 1226 1.000060 TGTCGTCGGGACCAAGTTTAG 60.000 52.381 0.00 0.00 45.46 1.85
897 1228 0.249741 CTGTCGTCGGGACCAAGTTT 60.250 55.000 0.00 0.00 45.46 2.66
898 1229 1.111116 TCTGTCGTCGGGACCAAGTT 61.111 55.000 0.00 0.00 45.46 2.66
899 1230 1.111116 TTCTGTCGTCGGGACCAAGT 61.111 55.000 0.00 0.00 45.46 3.16
900 1231 0.032952 TTTCTGTCGTCGGGACCAAG 59.967 55.000 0.00 0.00 45.46 3.61
901 1232 0.682852 ATTTCTGTCGTCGGGACCAA 59.317 50.000 0.00 0.00 45.46 3.67
902 1233 0.037697 CATTTCTGTCGTCGGGACCA 60.038 55.000 0.00 0.00 45.46 4.02
903 1234 0.245539 TCATTTCTGTCGTCGGGACC 59.754 55.000 5.31 0.00 45.46 4.46
916 1247 9.483062 CGAGTCTTTATCTGTCATTTTCATTTC 57.517 33.333 0.00 0.00 0.00 2.17
928 1259 5.599999 ACCATTAGCGAGTCTTTATCTGT 57.400 39.130 0.00 0.00 0.00 3.41
931 1262 5.107951 GCGTTACCATTAGCGAGTCTTTATC 60.108 44.000 0.00 0.00 34.05 1.75
932 1263 4.743644 GCGTTACCATTAGCGAGTCTTTAT 59.256 41.667 0.00 0.00 34.05 1.40
935 1266 2.165845 AGCGTTACCATTAGCGAGTCTT 59.834 45.455 0.00 0.00 34.05 3.01
938 1269 2.094390 TGAAGCGTTACCATTAGCGAGT 60.094 45.455 0.00 0.00 34.05 4.18
939 1270 2.536365 TGAAGCGTTACCATTAGCGAG 58.464 47.619 0.00 0.00 34.05 5.03
940 1271 2.658373 TGAAGCGTTACCATTAGCGA 57.342 45.000 0.00 0.00 34.05 4.93
941 1272 3.733024 TTTGAAGCGTTACCATTAGCG 57.267 42.857 0.00 0.00 35.20 4.26
942 1273 4.319901 CGTTTTTGAAGCGTTACCATTAGC 59.680 41.667 0.00 0.00 0.00 3.09
943 1274 4.319901 GCGTTTTTGAAGCGTTACCATTAG 59.680 41.667 0.00 0.00 37.43 1.73
944 1275 4.220572 GCGTTTTTGAAGCGTTACCATTA 58.779 39.130 0.00 0.00 37.43 1.90
945 1276 3.047093 GCGTTTTTGAAGCGTTACCATT 58.953 40.909 0.00 0.00 37.43 3.16
946 1277 2.657184 GCGTTTTTGAAGCGTTACCAT 58.343 42.857 0.00 0.00 37.43 3.55
947 1278 2.108178 GCGTTTTTGAAGCGTTACCA 57.892 45.000 0.00 0.00 37.43 3.25
971 1302 2.588877 CGTGCTTATCCCTGGCGG 60.589 66.667 0.00 0.00 0.00 6.13
973 1304 2.124736 TGCGTGCTTATCCCTGGC 60.125 61.111 0.00 0.00 0.00 4.85
992 1323 4.451900 CGTAGGAATGCCCATTTTCTACT 58.548 43.478 20.24 9.17 36.65 2.57
993 1324 4.813296 CGTAGGAATGCCCATTTTCTAC 57.187 45.455 16.63 16.63 36.13 2.59
1010 1341 3.181485 GGAGCAGCTTATATAGGCCGTAG 60.181 52.174 12.85 3.17 0.00 3.51
1011 1342 2.758979 GGAGCAGCTTATATAGGCCGTA 59.241 50.000 12.85 0.00 0.00 4.02
1012 1343 1.550976 GGAGCAGCTTATATAGGCCGT 59.449 52.381 12.85 0.00 0.00 5.68
1081 1412 1.146930 TGGAGGCGATGGATTGAGC 59.853 57.895 0.00 0.00 0.00 4.26
1128 1459 4.511636 GAGGAAGCCTCTTGCGAG 57.488 61.111 6.23 0.00 46.41 5.03
1166 1497 4.253257 CGCGTAGGCTCCGGTCTC 62.253 72.222 0.00 0.00 36.88 3.36
1566 1918 2.563179 GTTGAAGTACTCCCTGAGCTGA 59.437 50.000 0.00 0.00 32.04 4.26
1698 2050 2.124403 GAGAGGCCCGAGGACGTA 60.124 66.667 0.00 0.00 34.63 3.57
1821 2173 4.270834 AGTTACTCATTCGTAGGCTCTCA 58.729 43.478 0.00 0.00 0.00 3.27
1822 2174 4.904253 AGTTACTCATTCGTAGGCTCTC 57.096 45.455 0.00 0.00 0.00 3.20
1823 2175 5.682659 TCTAGTTACTCATTCGTAGGCTCT 58.317 41.667 0.00 0.00 0.00 4.09
2002 2361 9.889128 AAAGAAAGAAAATGAAATGAAGGTGAA 57.111 25.926 0.00 0.00 0.00 3.18
2055 2414 3.421728 ATTAGGCCCAAGCTCCGCC 62.422 63.158 0.00 10.00 43.35 6.13
2056 2415 1.894282 GATTAGGCCCAAGCTCCGC 60.894 63.158 0.00 0.00 39.73 5.54
2057 2416 0.181350 AAGATTAGGCCCAAGCTCCG 59.819 55.000 1.12 0.00 39.73 4.63
2058 2417 2.027385 CAAAGATTAGGCCCAAGCTCC 58.973 52.381 1.12 0.00 39.73 4.70
2059 2418 2.027385 CCAAAGATTAGGCCCAAGCTC 58.973 52.381 1.12 0.00 39.73 4.09
2060 2419 1.640670 TCCAAAGATTAGGCCCAAGCT 59.359 47.619 0.00 0.00 39.73 3.74
2061 2420 2.027385 CTCCAAAGATTAGGCCCAAGC 58.973 52.381 0.00 0.00 38.76 4.01
2062 2421 2.659428 CCTCCAAAGATTAGGCCCAAG 58.341 52.381 0.00 0.00 0.00 3.61
2063 2422 1.287739 CCCTCCAAAGATTAGGCCCAA 59.712 52.381 0.00 0.00 0.00 4.12
2064 2423 0.926293 CCCTCCAAAGATTAGGCCCA 59.074 55.000 0.00 0.00 0.00 5.36
2065 2424 0.186143 CCCCTCCAAAGATTAGGCCC 59.814 60.000 0.00 0.00 0.00 5.80
2066 2425 0.468214 GCCCCTCCAAAGATTAGGCC 60.468 60.000 0.00 0.00 32.68 5.19
2067 2426 0.258774 TGCCCCTCCAAAGATTAGGC 59.741 55.000 0.00 0.00 39.41 3.93
2068 2427 2.826674 TTGCCCCTCCAAAGATTAGG 57.173 50.000 0.00 0.00 0.00 2.69
2069 2428 2.961062 CCATTGCCCCTCCAAAGATTAG 59.039 50.000 0.00 0.00 0.00 1.73
2070 2429 2.359143 CCCATTGCCCCTCCAAAGATTA 60.359 50.000 0.00 0.00 0.00 1.75
2071 2430 1.623279 CCCATTGCCCCTCCAAAGATT 60.623 52.381 0.00 0.00 0.00 2.40
2072 2431 0.031817 CCCATTGCCCCTCCAAAGAT 60.032 55.000 0.00 0.00 0.00 2.40
2073 2432 1.387737 CCCATTGCCCCTCCAAAGA 59.612 57.895 0.00 0.00 0.00 2.52
2074 2433 2.361567 GCCCATTGCCCCTCCAAAG 61.362 63.158 0.00 0.00 0.00 2.77
2075 2434 1.513975 TAGCCCATTGCCCCTCCAAA 61.514 55.000 0.00 0.00 42.71 3.28
2076 2435 1.513975 TTAGCCCATTGCCCCTCCAA 61.514 55.000 0.00 0.00 42.71 3.53
2077 2436 1.933284 TTAGCCCATTGCCCCTCCA 60.933 57.895 0.00 0.00 42.71 3.86
2078 2437 1.152673 CTTAGCCCATTGCCCCTCC 60.153 63.158 0.00 0.00 42.71 4.30
2079 2438 1.152673 CCTTAGCCCATTGCCCCTC 60.153 63.158 0.00 0.00 42.71 4.30
2080 2439 1.622442 TCCTTAGCCCATTGCCCCT 60.622 57.895 0.00 0.00 42.71 4.79
2081 2440 1.152673 CTCCTTAGCCCATTGCCCC 60.153 63.158 0.00 0.00 42.71 5.80
2082 2441 1.152673 CCTCCTTAGCCCATTGCCC 60.153 63.158 0.00 0.00 42.71 5.36
2083 2442 1.152673 CCCTCCTTAGCCCATTGCC 60.153 63.158 0.00 0.00 42.71 4.52
2084 2443 1.152673 CCCCTCCTTAGCCCATTGC 60.153 63.158 0.00 0.00 41.71 3.56
2085 2444 1.152673 GCCCCTCCTTAGCCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
2086 2445 1.221213 TTGCCCCTCCTTAGCCCATT 61.221 55.000 0.00 0.00 0.00 3.16
2087 2446 1.221213 TTTGCCCCTCCTTAGCCCAT 61.221 55.000 0.00 0.00 0.00 4.00
2088 2447 1.439524 TTTTGCCCCTCCTTAGCCCA 61.440 55.000 0.00 0.00 0.00 5.36
2089 2448 0.970937 GTTTTGCCCCTCCTTAGCCC 60.971 60.000 0.00 0.00 0.00 5.19
2090 2449 0.039764 AGTTTTGCCCCTCCTTAGCC 59.960 55.000 0.00 0.00 0.00 3.93
2091 2450 2.366533 GTAGTTTTGCCCCTCCTTAGC 58.633 52.381 0.00 0.00 0.00 3.09
2092 2451 2.235402 TCGTAGTTTTGCCCCTCCTTAG 59.765 50.000 0.00 0.00 0.00 2.18
2093 2452 2.235402 CTCGTAGTTTTGCCCCTCCTTA 59.765 50.000 0.00 0.00 0.00 2.69
2094 2453 1.003233 CTCGTAGTTTTGCCCCTCCTT 59.997 52.381 0.00 0.00 0.00 3.36
2095 2454 0.613777 CTCGTAGTTTTGCCCCTCCT 59.386 55.000 0.00 0.00 0.00 3.69
2096 2455 0.392595 CCTCGTAGTTTTGCCCCTCC 60.393 60.000 0.00 0.00 0.00 4.30
2097 2456 0.323957 ACCTCGTAGTTTTGCCCCTC 59.676 55.000 0.00 0.00 0.00 4.30
2098 2457 0.769247 AACCTCGTAGTTTTGCCCCT 59.231 50.000 0.00 0.00 0.00 4.79
2099 2458 1.612676 AAACCTCGTAGTTTTGCCCC 58.387 50.000 0.66 0.00 36.57 5.80
2100 2459 2.161012 GCTAAACCTCGTAGTTTTGCCC 59.839 50.000 19.79 3.82 46.14 5.36
2101 2460 3.466712 GCTAAACCTCGTAGTTTTGCC 57.533 47.619 19.79 9.07 46.14 4.52
2114 2473 6.139048 TGTTCAGTAAAAACAGGCTAAACC 57.861 37.500 0.00 0.00 39.61 3.27
2115 2474 6.861572 GGATGTTCAGTAAAAACAGGCTAAAC 59.138 38.462 0.00 0.00 39.78 2.01
2116 2475 6.547880 TGGATGTTCAGTAAAAACAGGCTAAA 59.452 34.615 0.00 0.00 39.78 1.85
2117 2476 6.065374 TGGATGTTCAGTAAAAACAGGCTAA 58.935 36.000 0.00 0.00 39.78 3.09
2118 2477 5.626142 TGGATGTTCAGTAAAAACAGGCTA 58.374 37.500 0.00 0.00 39.78 3.93
2119 2478 4.469657 TGGATGTTCAGTAAAAACAGGCT 58.530 39.130 0.00 0.00 39.78 4.58
2120 2479 4.798574 CTGGATGTTCAGTAAAAACAGGC 58.201 43.478 0.00 0.00 39.78 4.85
2121 2480 4.278170 TGCTGGATGTTCAGTAAAAACAGG 59.722 41.667 0.00 0.00 39.78 4.00
2122 2481 5.215160 GTGCTGGATGTTCAGTAAAAACAG 58.785 41.667 0.00 0.00 39.78 3.16
2123 2482 4.642437 TGTGCTGGATGTTCAGTAAAAACA 59.358 37.500 0.00 0.00 40.63 2.83
2124 2483 5.181690 TGTGCTGGATGTTCAGTAAAAAC 57.818 39.130 0.00 0.00 37.12 2.43
2125 2484 5.843673 TTGTGCTGGATGTTCAGTAAAAA 57.156 34.783 0.00 0.00 37.12 1.94
2126 2485 5.843673 TTTGTGCTGGATGTTCAGTAAAA 57.156 34.783 0.00 0.00 37.12 1.52
2127 2486 5.843673 TTTTGTGCTGGATGTTCAGTAAA 57.156 34.783 0.00 0.00 37.12 2.01
2128 2487 5.359576 AGTTTTTGTGCTGGATGTTCAGTAA 59.640 36.000 0.00 0.00 37.12 2.24
2129 2488 4.887071 AGTTTTTGTGCTGGATGTTCAGTA 59.113 37.500 0.00 0.00 37.12 2.74
2130 2489 3.701040 AGTTTTTGTGCTGGATGTTCAGT 59.299 39.130 0.00 0.00 37.12 3.41
2131 2490 4.311816 AGTTTTTGTGCTGGATGTTCAG 57.688 40.909 0.00 0.00 37.79 3.02
2132 2491 5.126222 TGTTAGTTTTTGTGCTGGATGTTCA 59.874 36.000 0.00 0.00 0.00 3.18
2133 2492 5.587289 TGTTAGTTTTTGTGCTGGATGTTC 58.413 37.500 0.00 0.00 0.00 3.18
2134 2493 5.590530 TGTTAGTTTTTGTGCTGGATGTT 57.409 34.783 0.00 0.00 0.00 2.71
2135 2494 5.068987 ACATGTTAGTTTTTGTGCTGGATGT 59.931 36.000 0.00 0.00 0.00 3.06
2136 2495 5.531634 ACATGTTAGTTTTTGTGCTGGATG 58.468 37.500 0.00 0.00 0.00 3.51
2137 2496 5.789643 ACATGTTAGTTTTTGTGCTGGAT 57.210 34.783 0.00 0.00 0.00 3.41
2138 2497 6.892658 ATACATGTTAGTTTTTGTGCTGGA 57.107 33.333 2.30 0.00 0.00 3.86
2139 2498 9.075519 CATAATACATGTTAGTTTTTGTGCTGG 57.924 33.333 2.30 0.00 0.00 4.85
2140 2499 9.624697 ACATAATACATGTTAGTTTTTGTGCTG 57.375 29.630 2.30 0.00 0.00 4.41
2141 2500 9.624697 CACATAATACATGTTAGTTTTTGTGCT 57.375 29.630 2.30 0.00 0.00 4.40
2142 2501 9.619316 TCACATAATACATGTTAGTTTTTGTGC 57.381 29.630 2.30 0.00 31.01 4.57
2154 2513 9.874205 CCCAAGAAAAATTCACATAATACATGT 57.126 29.630 2.69 2.69 0.00 3.21
2155 2514 8.819974 GCCCAAGAAAAATTCACATAATACATG 58.180 33.333 0.00 0.00 0.00 3.21
2156 2515 8.761689 AGCCCAAGAAAAATTCACATAATACAT 58.238 29.630 0.00 0.00 0.00 2.29
2157 2516 8.034215 CAGCCCAAGAAAAATTCACATAATACA 58.966 33.333 0.00 0.00 0.00 2.29
2158 2517 7.492344 CCAGCCCAAGAAAAATTCACATAATAC 59.508 37.037 0.00 0.00 0.00 1.89
2159 2518 7.364585 CCCAGCCCAAGAAAAATTCACATAATA 60.365 37.037 0.00 0.00 0.00 0.98
2160 2519 6.408869 CCAGCCCAAGAAAAATTCACATAAT 58.591 36.000 0.00 0.00 0.00 1.28
2161 2520 5.279910 CCCAGCCCAAGAAAAATTCACATAA 60.280 40.000 0.00 0.00 0.00 1.90
2162 2521 4.222588 CCCAGCCCAAGAAAAATTCACATA 59.777 41.667 0.00 0.00 0.00 2.29
2163 2522 3.008266 CCCAGCCCAAGAAAAATTCACAT 59.992 43.478 0.00 0.00 0.00 3.21
2164 2523 2.368221 CCCAGCCCAAGAAAAATTCACA 59.632 45.455 0.00 0.00 0.00 3.58
2165 2524 2.289631 CCCCAGCCCAAGAAAAATTCAC 60.290 50.000 0.00 0.00 0.00 3.18
2166 2525 1.977129 CCCCAGCCCAAGAAAAATTCA 59.023 47.619 0.00 0.00 0.00 2.57
2167 2526 1.278985 CCCCCAGCCCAAGAAAAATTC 59.721 52.381 0.00 0.00 0.00 2.17
2168 2527 1.132560 TCCCCCAGCCCAAGAAAAATT 60.133 47.619 0.00 0.00 0.00 1.82
2169 2528 0.491371 TCCCCCAGCCCAAGAAAAAT 59.509 50.000 0.00 0.00 0.00 1.82
2170 2529 0.178935 CTCCCCCAGCCCAAGAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
2171 2530 1.464722 CTCCCCCAGCCCAAGAAAA 59.535 57.895 0.00 0.00 0.00 2.29
2172 2531 3.180282 CTCCCCCAGCCCAAGAAA 58.820 61.111 0.00 0.00 0.00 2.52
2173 2532 3.661648 GCTCCCCCAGCCCAAGAA 61.662 66.667 0.00 0.00 43.17 2.52
2197 2556 1.683365 CTTCATGGGCCCAACCTGG 60.683 63.158 32.58 16.14 39.10 4.45
2198 2557 1.683365 CCTTCATGGGCCCAACCTG 60.683 63.158 32.58 23.56 39.10 4.00
2199 2558 2.155197 GACCTTCATGGGCCCAACCT 62.155 60.000 32.58 10.32 38.13 3.50
2200 2559 1.682344 GACCTTCATGGGCCCAACC 60.682 63.158 32.58 9.04 38.13 3.77
2201 2560 4.018409 GACCTTCATGGGCCCAAC 57.982 61.111 32.58 10.49 38.13 3.77
2206 2565 4.424711 TGGCGGACCTTCATGGGC 62.425 66.667 0.00 0.00 45.48 5.36
2207 2566 2.438434 GTGGCGGACCTTCATGGG 60.438 66.667 0.00 0.00 41.11 4.00
2208 2567 1.746615 CAGTGGCGGACCTTCATGG 60.747 63.158 0.00 0.00 42.93 3.66
2209 2568 1.746615 CCAGTGGCGGACCTTCATG 60.747 63.158 0.00 0.00 36.63 3.07
2210 2569 2.185310 GACCAGTGGCGGACCTTCAT 62.185 60.000 9.78 0.00 36.63 2.57
2211 2570 2.847234 ACCAGTGGCGGACCTTCA 60.847 61.111 9.78 0.00 36.63 3.02
2212 2571 2.047179 GACCAGTGGCGGACCTTC 60.047 66.667 9.78 0.00 36.63 3.46
2213 2572 2.224159 ATGACCAGTGGCGGACCTT 61.224 57.895 9.78 0.00 36.63 3.50
2214 2573 2.607750 ATGACCAGTGGCGGACCT 60.608 61.111 9.78 0.00 36.63 3.85
2215 2574 2.436646 CATGACCAGTGGCGGACC 60.437 66.667 9.78 0.00 0.00 4.46
2216 2575 1.741770 GTCATGACCAGTGGCGGAC 60.742 63.158 15.31 8.15 0.00 4.79
2217 2576 2.662596 GTCATGACCAGTGGCGGA 59.337 61.111 15.31 0.00 0.00 5.54
2227 2586 0.247736 AGCTGAAGACCGGTCATGAC 59.752 55.000 35.00 17.91 0.00 3.06
2228 2587 0.247460 CAGCTGAAGACCGGTCATGA 59.753 55.000 35.00 18.29 0.00 3.07
2229 2588 0.247460 TCAGCTGAAGACCGGTCATG 59.753 55.000 35.00 21.44 0.00 3.07
2230 2589 0.976641 TTCAGCTGAAGACCGGTCAT 59.023 50.000 35.00 25.41 0.00 3.06
2231 2590 0.033504 GTTCAGCTGAAGACCGGTCA 59.966 55.000 35.00 15.69 34.27 4.02
2232 2591 0.670854 GGTTCAGCTGAAGACCGGTC 60.671 60.000 29.13 27.67 34.27 4.79
2233 2592 1.371558 GGTTCAGCTGAAGACCGGT 59.628 57.895 29.13 6.92 34.27 5.28
2234 2593 1.738099 CGGTTCAGCTGAAGACCGG 60.738 63.158 36.38 24.17 38.94 5.28
2235 2594 0.734253 CTCGGTTCAGCTGAAGACCG 60.734 60.000 37.45 37.45 41.92 4.79
2236 2595 1.016653 GCTCGGTTCAGCTGAAGACC 61.017 60.000 29.13 25.53 36.38 3.85
2237 2596 2.450619 GCTCGGTTCAGCTGAAGAC 58.549 57.895 29.13 22.23 36.38 3.01
2238 2597 4.996976 GCTCGGTTCAGCTGAAGA 57.003 55.556 29.13 21.34 36.38 2.87
2279 2638 8.219546 TGACTCAACAAGTTTTCAATATGTGA 57.780 30.769 0.00 0.00 38.74 3.58
2289 2648 5.253330 TCAGTTCCTGACTCAACAAGTTTT 58.747 37.500 0.00 0.00 38.74 2.43
2297 2656 2.319844 TGCTCTCAGTTCCTGACTCAA 58.680 47.619 0.00 0.00 35.39 3.02
2353 2713 1.134220 ACCCAGACAGACAAAAAGCGA 60.134 47.619 0.00 0.00 0.00 4.93
2365 2725 2.987547 GGACGGACGACCCAGACA 60.988 66.667 0.00 0.00 34.14 3.41
2372 2732 2.728383 CACACACGGACGGACGAC 60.728 66.667 8.01 0.00 37.61 4.34
2376 2736 4.934942 CACGCACACACGGACGGA 62.935 66.667 0.00 0.00 37.37 4.69
2436 2803 3.621794 GCGGACATGTCTAAAATGCATC 58.378 45.455 24.50 3.79 0.00 3.91
2462 2829 3.057019 CTCCAAGTGTTCGACGAAATGA 58.943 45.455 12.67 2.40 0.00 2.57
2471 2838 1.738099 CTCGCCCTCCAAGTGTTCG 60.738 63.158 0.00 0.00 0.00 3.95
2472 2839 2.035442 GCTCGCCCTCCAAGTGTTC 61.035 63.158 0.00 0.00 0.00 3.18
2629 2996 4.643387 GGGGCAGGTGCACTTCGT 62.643 66.667 17.98 0.00 45.56 3.85
2692 3059 0.667792 GCTAGGTAGCTACATGCCGC 60.668 60.000 24.75 17.28 45.62 6.53
2693 3060 0.387367 CGCTAGGTAGCTACATGCCG 60.387 60.000 24.75 19.15 46.85 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.