>input_sequence_68039
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--------------------------------------------------ATGGGCATTCCTACGGCCTATATAAGCTGC
TCCGCGCCCGCTAAACCCTCCACCCCTCTCGCCAGTCTCCAGCAGCTCCAAGCTCAATCCATCGCCTCCACCAGGCTCCA
GTACCGCGCCCGCCTCGCCTCGCAAGAGGCTTCCTCGACCTCTCCTTCAAGCAGCGGAGACCGGAGCCTACGCGGGGCTT
CGCGCCAGGAGCTGGCTAACCATCAGCAGACCCTCGCGGCGGCGCCGGCGCCG------------GACGCGGAGCTGGCC
GGGGAGACGGAGGAGCAGCGCGGCAAGTTCCTCGTGCTGCGCCTCTACGAGGCGCTCAACGCCCGCGACGCGCGCCGGGC
GCAGGAGCTGCTCGCCCCGGACCTCGAGTGGTGGTTCCATGGCCCGCCGGCGCACCAGCACATGATGCGCCTCCTCACCG
GCGCAGGCACCAACGCCGAGTTCAGGTTCTCCCCCCGCTCCGTCGACGCCTTCGGCTCCACCGTCATCGCCGAGGGGA--
-------GCGCGGACGGCGCCGGCCAGCTCCTCTACTGGGTGCACGCCTGGACCGTCGGGCCCGATGGGGTGATCACTCA
GCTCAGGGAGTACTTCAACACCGACCTCACCGTCACCCGCCTCTCCGCCGCGGCGGCCACCAACAACGCCAGCGCGGGCT
CCCCTAGCCACTCCTCCTCTTCTTCTGCCTCTTCCTCCCCCTCCTCGTCTACGTCCTCGGGCCTCTCCTCGCCGGCGCAC
ACGCCCAAGTGGCCCAAGTGCCTGTGGCAGAGCCGCCGCAGCGACCGCGCGCGCAAGTCGCTGCCGGGCCTCGTCCTCGC
CATCTAA-------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G189800
CTCGTCTCAGCGATACTACACTCATTTTTCTGGCTGAAGATTTTGCTGCTGCATCACGAGTGCGCACCAACCAACCAATG
CATCGAACTGGGTGTTTTTAACACCATTTTTGCTCCTCCTCCTCCTTTCCCCCAACGGAATTCATTATTCCGTGGTGCGG
CGATACTGCCGGATGCGCTGCTAGTACGTACGTGC-------------TCTCGGCCGGTTCGGTGACGA-TGACGACTCT
GCCTCTGCCTGGCTAGGCCTCCCCCGATTGCCACGCCCCCGGCAGACGACAAACCATGCTGCCTAAAAGGCGCCGCATTA
TTGCGAGTATTGTACTGCTCC-----TACTGTGCCATGCCCTAGTGTCATGCATGCATGCCACAGCGTACGTGCGTGCGT
ACGCTCCTACCCCTCAAGATGCAGGCGCAGGGAAGGGAGCACTGGATTGGATCGGATCGGTAGGCTAGAG----------
--------------------------CTAGACACACGACATGGCGGGCGATCATCCTTTGAGAAGG----AACCACTTTC
GTCGGTCCTTCGCGGAGACACTGACGCGATTATCGCCGCCTCCGCTCGTGGCTACGGACCGAGCGAGCGACACCTACCCC
GAAGCTCACCGCCCCAAGATGTGGCTGGGGCCGCCTCTTCCTTCTGACAAGTGACGGCTCACGAGTCCGTCTCCTTTCAA
TATCGTTTGCGTTGTACTAATCA-------------GCCCTTTGGCATCACATGTCTCTCCAACGGCGCAAGCTTGTGCC
CGCAGATTGTTACGCAACACTGGTTGTTGTACATAAAATGGATAATGGACT-----------------------------
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-----------------------------------------------------------ACTGCAGCTGCAGAGGTCTCA
TCCAATGGCCCAGACAGAC----------TTGACGCAGCTAGCGTTGCACCGTATCCTGCACTAAGCTGAAAAGAAAACA
CGCATGTTTGCTACCGTTCCTAGTCCTAAACTTGGTCCCGACGACAGAAATGAAAATGACAGATAAAGACTCGCTAATGG
TAACGCTTCAAAAACGCGCCCCCGCCAGGGATAAGCACGCACAGTAGAAAATGGGCATTCCTACGGCCTATATAAGCTGC
TCCGCGCCCGCTAAACCCTCCACCCCTCTCGCCAGTCTCCAGCAGCTCCAAGCTCAATCCATCGCCTCCACCAGGCTCCA
GTACCGCGCCCGCCTCGCCTCGCAAGAGGCTTCCTCGACCTCTCCTTCAAGCAGCGGAGACCGGAGCCTACGCGGGGCTT
CGCGCCAGGAGCTGGCTAACCATCAGCAGACCCTCGCGGCGGCGCCGGCGCCG------------GACGCGGAGCTGGCC
GGGGAGACGGAGGAGCAGCGCGGCAAGTTCCTCGTGCTGCGCCTCTACGAGGCGCTCAACGCCCGCGACGCGCGCCGGGC
GCAGGAGCTGCTCGCCCCGGACCTCGAGTGGTGGTTCCATGGCCCGCCGGCGCACCAGCACATGATGCGCCTCCTCACCG
GCGCAGGCACCAACGCCGAGTTCAGGTTCTCCCCCCGCTCCGTCGACGCCTTCGGCTCCACCGTCATCGCCGAGGGGAGC
GCGGACGGCGC---------CGGCCAGCTCCTCTACTGGGTGCACGCCTGGACCGTCGGGCCCGATGGGGTGATCACTCA
GCTCAGGGAGTACTTCAACACCGACCTCACCGTCACCCGCCTCTCCGCCGCGGCGGCCACCAACAACGCCAGCGCGGGCT
CCCCTAGCCACTCCTCCTCTTCTTCTGCCTCTTCCTCCCCCTCCTCGTCTACGTCCTCGGGCCTCTCCTCGCCGGCGCAC
ACGCCCAAGTGGCCCAAGTGCCTGTGGCAGAGCCGCCGCAGCGACCGCGCGCGCAAGTCGCTGCCGGGCCTCGTCCTCGC
CATCTAACAACATGAGA---GCCTACGAATGAGT-AACTAGAAGTCAAAGGAGTTGCTTTGCGTGCTTGAATTAGCAGTG
TGATTTATTTGGTCTAGATCATGGATTATGGTGTGTACTACTGCTACTGCGGCAATGGCTTGCTGCTGCGGCTGAATAAA
AGTATATC---GTATTGGAGCCTTGGGCAATGTGCGATGATTCACCTTCATTTCATTTTCTTTCTTTCCTGTTTCCTTGG
TGTCATGACCAGTGGCGGAGCTTGGGCCTAATCTTTGGAGGGGCAATGGGCTAAGGAGGGGCAAAACTACGAGGTTTAGC
CTGTTTTTACTGAACATCCAGCACAAAAACTAACATGTATTATGTGAATTTTTCTTGGGCTGGGGGAGCCACCGCCCAGG
TTGGGCCCATGAAGGTCCGCCACTGGTCATGACCGGTCTTCAGCTGAACCGAGCTACTCCCTCTTAATTTGATTTGATCA
CATATTGAAAACTTGTTGAGTCAGGAACTGAGAGCAACTCAAGGGGG-GACTCGAACGGACAAGGATTTTGTTCGCTTTT
TGTCTGTCTGGGTCGTCCGTCCGTGTGTG-------CGTGTCTTTTTTTGTTTGGGTAGGCCGGTTCGCCCAACGGGCGC
AGGATGCATTTTAGACATGTCCGCGTCGTCATTTCGTCGAACACTTGGAGGGCGAGCTCCCGCGCCACCTCGCCCACCGC
AGCTCGCCACGCCACCTCGCCGCTGTCGCCGCAGCTCACCCCGACCTTGCTGCTACCGCCCCGCAGCTCTCGCCCGGTGA
TCCAACGAGCTCCCGCCCCGCCCCGCAGCTTTTGCACGAAGTGCACCTGCCCCGCGTTGCGCACTCGTGCCCATCCCGTG
CGATGGCCAGCTCCAGCGGCGGCATGTAGCTACCTAGCGCGCATGCACGCAAGGGTGCGACCATGCCGATGTGCTCGGAC
GCTGCAGGCACGGCAAGCGCCGCGACTCGAGGACGGGCACGGCCGGGCGACCGGGCGTGGCG
>chr4A_22
TCATT----------------------TTCTGGCTGAAGATTTTGCTGCTTCATCGTGAGCGCCCACCAACCAACCAATG
CATCGAACTGGGTGTTTTC------------GCTCCTCCTCCTCCTTTCCCCCAACGGAATTCATTATTCCGTAGTGCGG
CCATACTGGCGGATGAGCTGCTAGTACGTACTACGTGCGTGCTCTCGGTCTCGGCCGGTCCGGTGACGACTGACGGCTCT
GCCTCCGCCTGG----GCCTCCCCCGATTGCCACGCCCCCGGCAGACGACAAACCATGCTGCCTAAAAGGCGCCGCATTA
TTGCGAGTATTCTACTGCTCCTACTGTACAGTGCCATGCCCTAGTGTCATGCATGCATGCCACAGCGTACGTGCGTGCGT
ACACTCCTACTCCTCAAGATGCAGACGCAGGGAAGGGAGCACCGGATTGGATCGGATCGATGGGTGCAAATGTTGCAGCG
CGCGCGCTGCTACTCTAGAGCCTAGCCTAGACGCACGACATGGCGGGCGATCATCCTTTGAGAAGGAACCAACCACTTTC
CTCGGTCCTTCGCGGAGACACT---------------------GCTCGTGGCTACGGACCGAGCGAGCGACACCTACCCC
GAAGCTCACCGCCCCAAGATGTGGCTGGGGCCGCCTCTGCCTTCTGACAAGTGACGGCTCACGAGCCCATCTCCTTTCAA
AACTGTTTGCGTTGTACTGTACTGTACTACTACTCGGCCCTTTGGCATCACATGTCTCTCCACCGGCGCAAGCTTGTGCC
CGCAGATTGTTACGCAGCAGTGGCTGTTGTACTTTTTTCTTAAAAAAGGAGGATGAAATCCGGTCTTCTGCACCTAGACG
ATGCATACGATTACTTTATTAATTATTCTCACAAGACTCTACAAAGTCATACAACAGTAAAGCTAAAAATATCGTCTAAT
CAACAAACTGTCGCTACATCTATCCAGTTGATGAAGGGACGCAGATAGCCTGGGCCTAATACCAAACAGACATCGCAACC
AAACCTAACATTTAAGACCTAAGACCCCAATTTAGCCACTTGCCGGGTCTGAAGCACACACTGCAGCCGTAGAGGTCTCA
TCCAATGGCTTATGGCTCACACACGAACTTTGACGCACCTAGCGTTGCACCGTGTCTTGCACTAAGCTGGG--GAAAAAA
CGCATGTTTGCCACCGCTCCTAAACTT-------GTCCCGACGACACAAATGAAAATGGCACCTAGAGTA---------G
TAACGCTTCAAAAACGCGCCCTCCCCAGGGATAAGCACGCACGCGCG----------------CGGCCTATATAAGCTGC
TCCGCGCCCGCTAAACCCTCCACCCCTCTCGCCAGTCTCCAGCAGCTCCAACCTCAATCCATCGCCTCCACCAGCCTCCA
GTACCGCGCTCCCG-----TCGCAAGAGGCTTCCTCGACCTCTCCTTCAAGCAGTGCAGACCGAAGCCTACGCGGGGCTT
CGCGCCAGGAGCTGGCTAACCATCAGCAGTCCCTCGCGGCGGCGCCGGCGCCG------------GACGCGGAGCTGGCC
GGGGAGACGGAGGAGCAGCGCGGCAAGTTCCTCGTGCTGCGCCTCTACGAGGCGCTCAACGCTCGCGACGCGCGCCGGGC
GCAGGAGCTGCTCGCCCCGGACCTCGAGTGGTGGTTCCATGGCCCGCCCGCGCACCAGCACATGATGCGCCTCCTCACCG
GCGCCGGCACCAACGCCGAGTTCAGGTTCTGCCCGCGCTCCGTCGACGCCTTCGGCTCCACCGTCATCGCCGAGGGGA--
-------GCGC---------CGGCCAGCTCCTCTACTGGGTGCACGCCTGGACCGTCGGGCCCGATGGGGTGATCACCCA
GCTCAGGGAGTACTTCAACACCGACCTCACCGTCACCCGCCTCTCCGCCGCGGCGGCCACCAACAACGCCAGCGCGGGCT
CCCCTAGCCACTCCTCCTCTTCCTCTGCCTCTTCCTCCCCCTCCTCGTCCACGTCCTCGGGCCTCTCCTCGCCGGCGCAC
ACGCCCAAGTGGCCCAAGTGCCTGTGGCAGAGCCGCCGCACCGACCGCGCGCGCAAGTCGCTGCCGGGCCTCGTCCTCGC
CATCTAACAACAGAGCCTACGCCTACGAATGAGTAAACTAGAAATCAAAGGAGTTGCTTTGCGTGCTTGAATTAGCAGCG
TGATTTATTTGGTCTAGATCATGGATTATGGTGTGTACTCCTGCTACTGGGGC------TTGCTCTTGCAGCTGAATAAA
AGTAGTATATTGTATTGGAGCCTCAAGCAATGTGTGACGTGTCACCTTCATTT--TTTTTTTCCTTTTCTGTTTCCTTGG
TGTCATGACCGGT-------------------------------------------------------------------
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>chr4B_1206
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---------------CTAACCATCAGCAGACCCTCGCGGTGGCGCCGGCGCCGCACGTCGACACGGACGCGGAGCTGGCA
GGGGAAATGGAGGAGCAGCGCGGCAAGTTCCTCGTGCTGCGCCTCTACGAGGCGCTTAACTCCCGCAACACACGCCGGGC
GCAGGACCTGCTCGCCCCAGACCTCGAGTGGTGGTTCCATGGCCCGCCCGCGCACCAGCACATGATGCGCCTCCTCACCA
GTGCCGGCACCAACACCGAGTTCAGGTTCTGCCCCCGCTCCATCGACGCCTTCGTCTCCACCGTAATCGCCGAGGGGA--
-------GCGCCGACGGCGCCGACCAGCTCCTCTACTGGGTGCACGCCTGGACCGTCGGGCCCGATGGGGTGATCACCCA
GCTCAGGGAGTACTTCAACACCGACCTCACCGTCACCCGCCTCTCCGCCGCGGCGGCCACCAAGAACGTCAGTGCGGGCT
CCCCTAGCCACTTCTCCTCTTCTTCTGCCTCTTCCTCCCCCTCCTCGTCCACGTTCTCGGGCCTCTCCTCGCCGGCGCAC
ACGCCCAAGTGGCCCAAGTGCCTGTGGCAGAGCCGCCGCAGCAACCGCGTGTGCAAGTCGCTGCAGGGCCTCGTCCTCGC
CATCTAACAACA---GA---GCCTACGAATGAGTAAACTAGAAGTCAAAGGAGTTGCTTTGCGTGCTTGAATTAAGAGTG
TGATTTATTTGGCCTAGATCATGGATTATGGTGTGTACTACTGCTACTGCGGCAATGACTTGCTGCTACGGCTGAATAAA
AGTATATC---GTATTGGAGCCTTGGGCAATGTGCGATGAGTCACCTTCATTTCATTTTCTTTCTTTCCTGTTTCCTTGG
TGTCATGACCGGT-------------------------------------------------------------------
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-------------------------------------CTTCAGCTGAACCGAGCTACTCCCTCTTAATTTGATTTGACCA
CATATTGGAAACTTGCTGAGTCAGGAATTGCGAGCAACTCAAGGGGGTGACTCGAACGGACAAGGATTTTGTCCGCTTTT
TGTCCGTCTGGATCGCCCGTCCGTGTGTCGTGTGTCCGTGTCTATTTTTGTTTGGGTAGGCCGGTTCGGCCAACGGGTGC
AGCATGCATTTTAGACATGTCCGCGTCGCCATTTCGTGAAACACTTGGAGGGCGAGCTCCCGCGCCACCTCGCCCACCGC
AGCTTGCCACGCCACCTCA---------CCGCAGCTCACCCCGACCTTGCTGCTTCCGC-CCGCAGCTCTCGCCCGGTGA
TCCAACGAGCTCCCGCCCCGTCCCGTAGCTTTCGCCCGAAGTGCACCTGCCCCGCATTGCGCACTCGTGCCCACCCTGTG
CGATGGCCAGCTCCAGCGATGGCATGTAGCTACCTAGCGCGCATGCACGCAAGGGTGCGACCATGCCGATGTGCTCGGAC
GCTGCAGGCACGGCAAGCGCCGCGACTCGAGGACATGCACGACAGGGCGACCGGGCGTGGCG
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSS-----------------------S----SS---S--S----------------
------------------SSSSSSSSSSSSS------------------------------------------S------
-S------S------S---------------SSSS------------------------S---------------S----
-----S------SSSS----------------------------------------------------------------
-----------S-----------------S--------------------------------------------------
--S-------S-------------S-----------------S----------------S-S--SSSS-S----------
--------------------------------S-----------------------------------------------
S---------------------SSSSSSSSSSSSSSSSSSSSS-------------------------------------
--------------------------------------S--------------------------S--S-----------
S-SS--------------SSS-S---------------------------------------S-----------------
----------------S--S---S--------S-SSSSSSS-S--SS-SSS-----------------------------
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-------------------------------------------------------------------S-S----------
---------SS-SSSSSSS------------------S---------------S--S------------SSSS-----S-
-----------S----S-----SS-S-SSSSSSS------------S-----------S--SS--S--SSSSSSSSSSS-
---------------------S-S------------------SSSS-SSSSSSSSSSSSSSSS-----------------
---------------------------------------------------S----------------------S-----
---------S-S-SSSSSS-----------------------------------S-S------S----------------
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------------------------------------------------S-------------------------------
----S-------------------------S-----------------------------------------------SS
SSSSSSS----------------------------------------------------------------------S--
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-------------------------------------------------S------------------------------
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------------SSS-----------------------------------------------------------------
---------------------------------------------------------S----------------------
----------------------------------------S---------------------------------------
----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S--
-------S-------S-----------S--S-----------------------------------------S-------
----S------S---S------------S--------------S------------------------S--------S--
--S-------------------------S--------SS-----------------------------------------
----S-------------SSSSSSSSSS--------------------------S----S--------------------
--------------------S----S------S--S-------------------S-----------------S--S---
------------------SS------------------------------------------------------------
----------------------------------SS-----S-S------------------
>forward_592
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------------CGGAGACACTGACGCGATTA------------------------------------------------
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>reverse_2431
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------------------------------ATCTTTGGAGGGGCAATGGG------------------------------
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