AutoCloner

Multiple sequence alignment - TraesCS4D01G180600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G180600	chr4D	100.000	1667	0	0	772	2438	314522360	314520694	0.000000e+00	3079.0
1	TraesCS4D01G180600	chr4D	93.981	648	29	7	1029	1669	92671070	92670426	0.000000e+00	972.0
2	TraesCS4D01G180600	chr4D	100.000	336	0	0	1	336	314523131	314522796	2.660000e-174	621.0
3	TraesCS4D01G180600	chr3D	94.939	652	28	3	1021	1671	426936747	426936100	0.000000e+00	1016.0
4	TraesCS4D01G180600	chr3D	92.868	645	39	3	1029	1669	545070620	545069979	0.000000e+00	929.0
5	TraesCS4D01G180600	chr3D	92.233	618	45	3	1669	2284	412060730	412061346	0.000000e+00	872.0
6	TraesCS4D01G180600	chr3D	93.411	258	12	4	772	1024	526482098	526481841	6.360000e-101	377.0
7	TraesCS4D01G180600	chr3D	94.492	236	13	0	789	1024	566447771	566447536	4.950000e-97	364.0
8	TraesCS4D01G180600	chr3D	89.617	183	14	4	2256	2438	283302462	283302285	6.780000e-56	228.0
9	TraesCS4D01G180600	chr3D	96.774	31	1	0	1644	1674	9438617	9438587	4.000000e-03	52.8
10	TraesCS4D01G180600	chr3D	100.000	28	0	0	1644	1671	417077991	417077964	4.000000e-03	52.8
11	TraesCS4D01G180600	chrUn	94.384	641	32	2	1030	1669	105427846	105427209	0.000000e+00	981.0
12	TraesCS4D01G180600	chr7D	92.308	650	40	4	1029	1671	64682282	64681636	0.000000e+00	915.0
13	TraesCS4D01G180600	chr7D	87.081	805	57	27	1669	2438	210574943	210574151	0.000000e+00	867.0
14	TraesCS4D01G180600	chr7D	86.826	334	33	3	1	333	376527856	376528179	1.780000e-96	363.0
15	TraesCS4D01G180600	chr6A	92.308	650	38	5	1029	1669	579130905	579131551	0.000000e+00	913.0
16	TraesCS4D01G180600	chr6A	89.097	321	27	3	1	320	9522183	9522496	2.270000e-105	392.0
17	TraesCS4D01G180600	chr6A	93.625	251	13	3	774	1024	464502146	464502393	2.960000e-99	372.0
18	TraesCS4D01G180600	chr6A	92.636	258	14	4	772	1024	146537820	146538077	1.380000e-97	366.0
19	TraesCS4D01G180600	chr3A	92.403	645	42	3	1029	1669	79334989	79334348	0.000000e+00	913.0
20	TraesCS4D01G180600	chr3A	91.379	290	19	4	1	287	9515490	9515776	2.270000e-105	392.0
21	TraesCS4D01G180600	chr3A	93.625	251	12	4	774	1024	127350341	127350587	2.960000e-99	372.0
22	TraesCS4D01G180600	chr3A	88.581	289	32	1	4	292	740916747	740917034	1.390000e-92	350.0
23	TraesCS4D01G180600	chr1A	92.000	650	48	2	1023	1671	478633010	478633656	0.000000e+00	909.0
24	TraesCS4D01G180600	chr1A	91.329	173	14	1	2266	2438	274178167	274178338	4.050000e-58	235.0
25	TraesCS4D01G180600	chr5D	92.857	630	31	7	1021	1649	493362434	493363050	0.000000e+00	902.0
26	TraesCS4D01G180600	chr5D	91.290	620	47	5	1669	2284	218267624	218267008	0.000000e+00	839.0
27	TraesCS4D01G180600	chr5D	90.476	315	21	5	2	308	326743044	326743357	8.120000e-110	407.0
28	TraesCS4D01G180600	chr1D	92.382	617	45	2	1669	2284	401045141	401044526	0.000000e+00	878.0
29	TraesCS4D01G180600	chr1D	91.909	618	47	3	1669	2284	212849440	212848824	0.000000e+00	861.0
30	TraesCS4D01G180600	chr1D	91.479	622	47	4	1669	2284	290424218	290423597	0.000000e+00	850.0
31	TraesCS4D01G180600	chr1D	89.600	250	25	1	2	251	11881859	11881611	1.410000e-82	316.0
32	TraesCS4D01G180600	chr1D	90.805	174	15	1	2264	2437	212848807	212848635	5.240000e-57	231.0
33	TraesCS4D01G180600	chr6D	92.071	618	46	3	1669	2284	148143512	148144128	0.000000e+00	867.0
34	TraesCS4D01G180600	chr6D	94.672	244	12	1	781	1024	18023200	18022958	6.360000e-101	377.0
35	TraesCS4D01G180600	chr6D	92.405	237	16	2	1	237	18024047	18023813	1.080000e-88	337.0
36	TraesCS4D01G180600	chr1B	91.748	618	49	2	1669	2284	330967022	330967639	0.000000e+00	857.0
37	TraesCS4D01G180600	chr1B	91.572	617	47	4	1669	2282	305917543	305916929	0.000000e+00	846.0
38	TraesCS4D01G180600	chr4A	91.382	615	52	1	1669	2282	152316277	152316891	0.000000e+00	841.0
39	TraesCS4D01G180600	chr4A	89.247	186	18	2	2253	2438	467914747	467914930	5.240000e-57	231.0
40	TraesCS4D01G180600	chr2D	94.628	242	12	1	781	1022	109402006	109402246	8.230000e-100	374.0
41	TraesCS4D01G180600	chr2D	90.625	192	16	2	2248	2438	124468093	124467903	1.120000e-63	254.0
42	TraesCS4D01G180600	chr2D	89.130	184	18	2	2255	2438	27874613	27874432	6.780000e-56	228.0
43	TraesCS4D01G180600	chr2D	80.108	186	23	10	1500	1682	15786485	15786311	2.540000e-25	126.0
44	TraesCS4D01G180600	chr2A	92.941	255	13	5	774	1024	760759109	760759362	1.380000e-97	366.0
45	TraesCS4D01G180600	chr5A	94.492	236	13	0	789	1024	635555520	635555285	4.950000e-97	364.0
46	TraesCS4D01G180600	chr5B	90.476	273	23	1	1	270	697574867	697575139	8.290000e-95	357.0
47	TraesCS4D01G180600	chr3B	85.449	323	38	5	1	323	503032485	503032798	6.500000e-86	327.0
48	TraesCS4D01G180600	chr3B	89.617	183	16	3	2256	2438	377399526	377399347	1.890000e-56	230.0
49	TraesCS4D01G180600	chr7A	91.908	173	13	1	2266	2438	494263920	494264091	8.710000e-60	241.0
50	TraesCS4D01G180600	chr6B	89.412	85	9	0	1587	1671	67531783	67531699	9.220000e-20	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G180600	chr4D	314520694	314523131	2437	True	1850	3079	100.0000	1	2438	2	chr4D.!!$R2	2437
1	TraesCS4D01G180600	chr4D	92670426	92671070	644	True	972	972	93.9810	1029	1669	1	chr4D.!!$R1	640
2	TraesCS4D01G180600	chr3D	426936100	426936747	647	True	1016	1016	94.9390	1021	1671	1	chr3D.!!$R4	650
3	TraesCS4D01G180600	chr3D	545069979	545070620	641	True	929	929	92.8680	1029	1669	1	chr3D.!!$R6	640
4	TraesCS4D01G180600	chr3D	412060730	412061346	616	False	872	872	92.2330	1669	2284	1	chr3D.!!$F1	615
5	TraesCS4D01G180600	chrUn	105427209	105427846	637	True	981	981	94.3840	1030	1669	1	chrUn.!!$R1	639
6	TraesCS4D01G180600	chr7D	64681636	64682282	646	True	915	915	92.3080	1029	1671	1	chr7D.!!$R1	642
7	TraesCS4D01G180600	chr7D	210574151	210574943	792	True	867	867	87.0810	1669	2438	1	chr7D.!!$R2	769
8	TraesCS4D01G180600	chr6A	579130905	579131551	646	False	913	913	92.3080	1029	1669	1	chr6A.!!$F4	640
9	TraesCS4D01G180600	chr3A	79334348	79334989	641	True	913	913	92.4030	1029	1669	1	chr3A.!!$R1	640
10	TraesCS4D01G180600	chr1A	478633010	478633656	646	False	909	909	92.0000	1023	1671	1	chr1A.!!$F2	648
11	TraesCS4D01G180600	chr5D	493362434	493363050	616	False	902	902	92.8570	1021	1649	1	chr5D.!!$F2	628
12	TraesCS4D01G180600	chr5D	218267008	218267624	616	True	839	839	91.2900	1669	2284	1	chr5D.!!$R1	615
13	TraesCS4D01G180600	chr1D	401044526	401045141	615	True	878	878	92.3820	1669	2284	1	chr1D.!!$R3	615
14	TraesCS4D01G180600	chr1D	290423597	290424218	621	True	850	850	91.4790	1669	2284	1	chr1D.!!$R2	615
15	TraesCS4D01G180600	chr1D	212848635	212849440	805	True	546	861	91.3570	1669	2437	2	chr1D.!!$R4	768
16	TraesCS4D01G180600	chr6D	148143512	148144128	616	False	867	867	92.0710	1669	2284	1	chr6D.!!$F1	615
17	TraesCS4D01G180600	chr6D	18022958	18024047	1089	True	357	377	93.5385	1	1024	2	chr6D.!!$R1	1023
18	TraesCS4D01G180600	chr1B	330967022	330967639	617	False	857	857	91.7480	1669	2284	1	chr1B.!!$F1	615
19	TraesCS4D01G180600	chr1B	305916929	305917543	614	True	846	846	91.5720	1669	2282	1	chr1B.!!$R1	613
20	TraesCS4D01G180600	chr4A	152316277	152316891	614	False	841	841	91.3820	1669	2282	1	chr4A.!!$F1	613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
19	20	0.040067	GTCTGAGGCCAAAAACGCAG	60.040	55.0	5.01	0.51	36.10	5.18	F
26	27	0.319813	GCCAAAAACGCAGCTCCAAT	60.320	50.0	0.00	0.00	0.00	3.16	F
1107	1656	0.797542	AGAAGACGACGACGAAGGAG	59.202	55.0	15.32	0.00	42.66	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1213	1762	1.001746	CTTCTTCTGCTCTGCCTCACA	59.998	52.381	0.00	0.00	0.00	3.58	R
1271	1822	1.048724	GGACTCGATGGGGATCACCA	61.049	60.000	21.60	21.60	46.24	4.17	R
2121	2687	1.235724	GTTATAATCAGGGGTGCGCC	58.764	55.000	8.12	8.12	0.00	6.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	0.040067	GTCTGAGGCCAAAAACGCAG	60.040	55.000	5.01	0.51	36.10	5.18
22	23	1.081175	GAGGCCAAAAACGCAGCTC	60.081	57.895	5.01	0.00	0.00	4.09
26	27	0.319813	GCCAAAAACGCAGCTCCAAT	60.320	50.000	0.00	0.00	0.00	3.16
37	38	0.824759	AGCTCCAATAGACGGTCCAC	59.175	55.000	4.14	0.00	0.00	4.02
140	141	2.909965	GTCCAAAACCAGCCGCCA	60.910	61.111	0.00	0.00	0.00	5.69
266	267	3.896133	GCATGCCGCCCACATCAG	61.896	66.667	6.36	0.00	32.94	2.90
267	268	2.124612	CATGCCGCCCACATCAGA	60.125	61.111	0.00	0.00	0.00	3.27
268	269	1.527611	CATGCCGCCCACATCAGAT	60.528	57.895	0.00	0.00	0.00	2.90
269	270	1.228063	ATGCCGCCCACATCAGATC	60.228	57.895	0.00	0.00	0.00	2.75
270	271	1.703014	ATGCCGCCCACATCAGATCT	61.703	55.000	0.00	0.00	0.00	2.75
271	272	1.890979	GCCGCCCACATCAGATCTG	60.891	63.158	17.07	17.07	0.00	2.90
272	273	1.227764	CCGCCCACATCAGATCTGG	60.228	63.158	22.42	9.99	0.00	3.86
273	274	1.890979	CGCCCACATCAGATCTGGC	60.891	63.158	22.42	15.27	35.55	4.85
274	275	1.527844	GCCCACATCAGATCTGGCC	60.528	63.158	22.42	0.00	32.74	5.36
275	276	1.150081	CCCACATCAGATCTGGCCC	59.850	63.158	22.42	0.00	0.00	5.80
276	277	1.150081	CCACATCAGATCTGGCCCC	59.850	63.158	22.42	0.00	0.00	5.80
277	278	1.227764	CACATCAGATCTGGCCCCG	60.228	63.158	22.42	9.10	0.00	5.73
278	279	2.429058	CATCAGATCTGGCCCCGG	59.571	66.667	22.42	0.00	0.00	5.73
279	280	3.564218	ATCAGATCTGGCCCCGGC	61.564	66.667	22.42	0.00	41.06	6.13
302	848	3.814268	CCCGCCGCTGTTTCCATG	61.814	66.667	0.00	0.00	0.00	3.66
329	875	3.227276	CGCCCTCCCGCTACAGAT	61.227	66.667	0.00	0.00	0.00	2.90
330	876	2.737830	GCCCTCCCGCTACAGATC	59.262	66.667	0.00	0.00	0.00	2.75
331	877	2.873525	GCCCTCCCGCTACAGATCC	61.874	68.421	0.00	0.00	0.00	3.36
332	878	2.565645	CCCTCCCGCTACAGATCCG	61.566	68.421	0.00	0.00	0.00	4.18
333	879	1.528542	CCTCCCGCTACAGATCCGA	60.529	63.158	0.00	0.00	0.00	4.55
334	880	1.655329	CTCCCGCTACAGATCCGAC	59.345	63.158	0.00	0.00	0.00	4.79
335	881	0.820074	CTCCCGCTACAGATCCGACT	60.820	60.000	0.00	0.00	0.00	4.18
840	1386	4.803426	CCGCTCCACCGCTCTCAC	62.803	72.222	0.00	0.00	0.00	3.51
850	1396	3.444805	GCTCTCACCGCTCTCCGT	61.445	66.667	0.00	0.00	34.38	4.69
855	1401	4.680237	CACCGCTCTCCGTTGGCA	62.680	66.667	0.00	0.00	34.38	4.92
887	1433	2.034221	GAAGGGCAAGTCGGGCTT	59.966	61.111	0.00	0.00	38.08	4.35
894	1440	1.004918	CAAGTCGGGCTTCTTCGGT	60.005	57.895	0.00	0.00	34.69	4.69
923	1469	1.190178	AAGCCCTCCGGTAACTTCGT	61.190	55.000	0.00	0.00	0.00	3.85
965	1511	3.799755	GCGTTGGTGGATCGGCAC	61.800	66.667	0.00	0.00	0.00	5.01
1014	1560	3.258070	CTACGACGTGGCGGTGTGA	62.258	63.158	11.56	0.00	35.12	3.58
1027	1573	3.542676	TGTGACGTGCCGAGGGTT	61.543	61.111	0.00	0.00	0.00	4.11
1083	1629	2.432146	CAAGATGAAGGAGATCCCGACA	59.568	50.000	0.00	0.00	40.87	4.35
1100	1649	2.401063	CGACAAAGAAGAAGACGACGAC	59.599	50.000	0.00	0.00	0.00	4.34
1105	1654	1.197264	AGAAGAAGACGACGACGAAGG	59.803	52.381	15.32	0.00	42.66	3.46
1106	1655	1.196354	GAAGAAGACGACGACGAAGGA	59.804	52.381	15.32	0.00	42.66	3.36
1107	1656	0.797542	AGAAGACGACGACGAAGGAG	59.202	55.000	15.32	0.00	42.66	3.69
1258	1807	1.596895	GGCGAAGAAGGAGGACGAGT	61.597	60.000	0.00	0.00	0.00	4.18
1498	2058	9.436957	CTATGTTGAATGGACTAGTAGTTTGTT	57.563	33.333	3.85	0.00	0.00	2.83
1597	2158	2.954611	GGAGCTCCAAAACGCACC	59.045	61.111	28.43	0.00	35.64	5.01
1699	2260	0.179156	CAATGATGAACGGTGGCTGC	60.179	55.000	0.00	0.00	0.00	5.25
1763	2324	7.553760	AGCAATATGATGATGAACACACAAGTA	59.446	33.333	0.00	0.00	0.00	2.24
1807	2369	6.812879	TTGCATGGCAATATATCTCAGAAG	57.187	37.500	0.00	0.00	43.99	2.85
1837	2399	7.395525	TGGAAATGCCATAATAGGTAGGTAA	57.604	36.000	0.00	0.00	43.33	2.85
1992	2558	3.942130	AGCAAATTGTGGAAAGGTAGC	57.058	42.857	0.00	0.00	0.00	3.58
2274	2841	7.833682	ACTAACCAATGATCATGAACCAATACA	59.166	33.333	9.46	0.00	0.00	2.29
2275	2842	7.664552	AACCAATGATCATGAACCAATACAT	57.335	32.000	9.46	0.00	0.00	2.29
2336	2940	4.415512	TCCCCCTTGAATACCTATCCTTTG	59.584	45.833	0.00	0.00	0.00	2.77
2374	2978	2.418280	CACGTGCATATTGCCAACTACA	59.582	45.455	0.82	0.00	44.23	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	1.081175	GAGCTGCGTTTTTGGCCTC	60.081	57.895	3.32	0.00	0.00	4.70
7	8	0.319813	ATTGGAGCTGCGTTTTTGGC	60.320	50.000	0.00	0.00	0.00	4.52
19	20	0.535335	TGTGGACCGTCTATTGGAGC	59.465	55.000	0.00	0.00	0.00	4.70
22	23	2.691409	ACATGTGGACCGTCTATTGG	57.309	50.000	0.00	0.00	0.00	3.16
50	51	3.164269	AGGAGGCCGCGATCCAAT	61.164	61.111	21.71	3.85	38.12	3.16
54	55	2.164865	ATCATGAGGAGGCCGCGATC	62.165	60.000	8.23	1.96	0.00	3.69
55	56	2.212811	ATCATGAGGAGGCCGCGAT	61.213	57.895	8.23	0.00	0.00	4.58
57	58	2.087462	TACATCATGAGGAGGCCGCG	62.087	60.000	15.42	0.00	0.00	6.46
58	59	0.106708	TTACATCATGAGGAGGCCGC	59.893	55.000	15.42	0.00	0.00	6.53
69	70	7.072177	CGTGAGGTGTTGTATTTTACATCAT	57.928	36.000	0.00	0.00	39.66	2.45
99	100	4.025396	CAGATGCACCTCGTGATGTAAATC	60.025	45.833	0.00	0.00	35.23	2.17
162	163	0.965866	GGGCGGGAAAGGAAAGGAAG	60.966	60.000	0.00	0.00	0.00	3.46
249	250	3.896133	CTGATGTGGGCGGCATGC	61.896	66.667	9.90	9.90	45.38	4.06
250	251	1.512996	GATCTGATGTGGGCGGCATG	61.513	60.000	12.47	0.00	0.00	4.06
251	252	1.228063	GATCTGATGTGGGCGGCAT	60.228	57.895	12.47	0.00	0.00	4.40
252	253	2.190313	GATCTGATGTGGGCGGCA	59.810	61.111	12.47	0.00	0.00	5.69
253	254	1.890979	CAGATCTGATGTGGGCGGC	60.891	63.158	18.34	0.00	0.00	6.53
254	255	1.227764	CCAGATCTGATGTGGGCGG	60.228	63.158	24.62	0.00	39.87	6.13
255	256	1.890979	GCCAGATCTGATGTGGGCG	60.891	63.158	28.72	9.80	43.52	6.13
256	257	4.154296	GCCAGATCTGATGTGGGC	57.846	61.111	28.72	19.36	43.52	5.36
257	258	1.150081	GGGCCAGATCTGATGTGGG	59.850	63.158	28.72	14.72	43.52	4.61
258	259	1.150081	GGGGCCAGATCTGATGTGG	59.850	63.158	25.15	25.15	45.91	4.17
259	260	1.227764	CGGGGCCAGATCTGATGTG	60.228	63.158	24.62	8.29	0.00	3.21
260	261	2.446848	CCGGGGCCAGATCTGATGT	61.447	63.158	24.62	0.00	0.00	3.06
261	262	2.429058	CCGGGGCCAGATCTGATG	59.571	66.667	24.62	9.41	0.00	3.07
262	263	3.564218	GCCGGGGCCAGATCTGAT	61.564	66.667	24.62	0.00	34.56	2.90
313	859	2.737830	GATCTGTAGCGGGAGGGC	59.262	66.667	0.00	0.00	0.00	5.19
314	860	2.565645	CGGATCTGTAGCGGGAGGG	61.566	68.421	0.00	0.00	0.00	4.30
315	861	1.528542	TCGGATCTGTAGCGGGAGG	60.529	63.158	0.42	0.00	0.00	4.30
316	862	0.820074	AGTCGGATCTGTAGCGGGAG	60.820	60.000	0.42	0.00	0.00	4.30
317	863	1.226542	AGTCGGATCTGTAGCGGGA	59.773	57.895	0.42	0.00	0.00	5.14
318	864	3.843304	AGTCGGATCTGTAGCGGG	58.157	61.111	0.42	0.00	0.00	6.13
850	1396	1.959226	GCGTCTTCTTCGGTGCCAA	60.959	57.895	0.00	0.00	0.00	4.52
855	1401	1.080705	CTTCGGCGTCTTCTTCGGT	60.081	57.895	6.85	0.00	0.00	4.69
887	1433	0.318441	CTTCTGCCTCACACCGAAGA	59.682	55.000	0.00	0.00	34.50	2.87
950	1496	1.079681	TACGTGCCGATCCACCAAC	60.080	57.895	0.00	0.00	32.10	3.77
1024	1570	2.543067	ATCTCCGCTTCTGCCCAACC	62.543	60.000	0.00	0.00	35.36	3.77
1027	1573	2.586245	CATCTCCGCTTCTGCCCA	59.414	61.111	0.00	0.00	35.36	5.36
1050	1596	1.452651	CATCTTGATGCCCTGCGGT	60.453	57.895	0.00	0.00	0.00	5.68
1083	1629	3.298317	CTTCGTCGTCGTCTTCTTCTTT	58.702	45.455	1.33	0.00	38.33	2.52
1100	1649	2.809601	CAACCGACGGCTCCTTCG	60.810	66.667	15.39	7.71	37.44	3.79
1105	1654	1.069378	CTAACGACAACCGACGGCTC	61.069	60.000	15.39	5.25	41.76	4.70
1106	1655	1.080974	CTAACGACAACCGACGGCT	60.081	57.895	15.39	0.00	41.76	5.52
1107	1656	1.372128	ACTAACGACAACCGACGGC	60.372	57.895	15.39	0.00	41.76	5.68
1176	1725	1.749638	CTCGGCCTGGACGTACTCT	60.750	63.158	23.25	0.00	34.61	3.24
1213	1762	1.001746	CTTCTTCTGCTCTGCCTCACA	59.998	52.381	0.00	0.00	0.00	3.58
1258	1807	2.583298	ATCACCATCGAGGGACCGGA	62.583	60.000	25.24	14.27	43.89	5.14
1271	1822	1.048724	GGACTCGATGGGGATCACCA	61.049	60.000	21.60	21.60	46.24	4.17
1305	1856	1.544825	CCTCCGAGAAGTCTGCCCAA	61.545	60.000	0.00	0.00	0.00	4.12
1597	2158	1.603456	AAAATTTGGGCCGCCAAAAG	58.397	45.000	17.12	0.00	41.96	2.27
1607	2168	5.400066	AAACCGGAGATGTAAAATTTGGG	57.600	39.130	9.46	0.00	0.00	4.12
1699	2260	2.615447	AGCTGACATGATATTTGTGGCG	59.385	45.455	0.00	0.00	31.74	5.69
1763	2324	4.104383	ACTTCCACTGTTCCATCACATT	57.896	40.909	0.00	0.00	0.00	2.71
1776	2338	3.130264	TTGCCATGCAACTTCCACT	57.870	47.368	0.00	0.00	43.99	4.00
1837	2399	1.494721	TCTTCCTCAAAACAGCCACCT	59.505	47.619	0.00	0.00	0.00	4.00
1992	2558	3.990469	GAGTCCATGGATTATACGCACTG	59.010	47.826	19.62	0.00	0.00	3.66
2121	2687	1.235724	GTTATAATCAGGGGTGCGCC	58.764	55.000	8.12	8.12	0.00	6.53
2336	2940	4.033684	CACGTGTTATAAGACTAGTCCGC	58.966	47.826	19.38	8.43	0.00	5.54

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.