>input_sequence_80345
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-------------------------GACGTGGCGGTGTGACGTGCCGAGGGTTGGGCAGAAGCGGAGATGCTTGTACCGC
AGGGCATCAAGATGAAGGAGATCCCGACAAAGAAGAAGACGACGACGAAGGAG---CCGTCGGTTGTCGTTAGTGCTGGC
GAGACCGACGAGGAGGCGATGGTGAGGTTTGCTCGGGAGCATCCAGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GTGTGAGGCAGAGCAGAAGAAGAAGGGGGCGAAGAAGGAGGACGAGTCCGGTCC--CTCGATGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGATTGGGCAGACTTCTCGGA---GG------AGGAGGAGGAGGGATGCGACGACCCGGAGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTT---
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>chr4D_1_TraesCS4D01G180600
GTCTGAGGCCAAAAACGCAGCTCCAATAGACGGTCCACATGTAAAAAAAAATTGGATCGCGGCCTCCTCATGATGTAAAA
TACAACACCTCACGGTGCAGATTTACATCACGAGGTGCATCTGGTCCAAAACCAGCCGCCACCCGCGAACGCCCAACCGC
CACTTCCTTTCCTTTCCCGCCCGCCCGCCCGCGACCTCCCACCCGTCCGCCGCCGCGCCGCCGCCTCCACACCCCGCAGC
CTCCCCGCCGCATGCCGCCCACATCAGATCTGGCCCCGGC----------------------------------------
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-------------------------CCGCCCCCGCCGCTGTTTCCATGCCGCCCCGCCGCCCTCCCGCTACAGATCCGAC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCACGCCGCCGCCGCTCCGTCCGCCACCGCCCCGGCCGCA
CGCCGCCGCCGCTCCACCGCTCTCACCGCTCTCCGTTGGCACCGAAGAAGACGCCGAAGGGCAAGTCGGGCTTCTTCGGT
GTGAGGCAGAAGCCCTCCGGTAACTTCGTAGTGGAGTTCTCCGACGCCGGGAGGCGTTGGTGGATCGGCACGTACCCCTC
CGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGTGTGACGTGCCGAGGGTTGGGCAGAAGCGGAGATGCTTGTACCGC
AGGGCATCAAGATGAAGGAGATCCCGACAAAGAAGAAG---ACGACGACGAAGGAGCCGTCGGTTGTCGTTAGTGCTGGC
GAGACCGACGAGGAGGCGATGGTGAGGTTTGCTCGGGAGCATCCAGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GTGTGAGGCAGAGCAGAAGAAGAAGGGGGCGAAGAAGGAGGACGAGTCCGGTCC--CTCGATGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGATTGGGCAGACTTCTCGGA---GG------AGGAGGAGGAGGGATGCGACGACCCGGAGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTTTGTTGTTTTAAG-AATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACGCACCTT
TTGGCGGCCCAAATTTTACATCTCCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCTAACATGTATAA
CAATGATGAACGGTGGCTGCGCCACAAATATCATGTCAGCTCTATATGATCATGCAAAGCAATATGATGATGAACACACA
AGTAATGTG-ATGGAACAGTGGAAGTTGCATGGCAATATATCTCAGAAGGGCTATGGAAATGCCATAATAGGTAGGTAAG
GTGGCTGTTTTGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGTGTATCATATCATGGGGTTTGGATGCACCGGCGAA
GTTTGCACCAACTCTCG----AGGTGAGAAAGAGCAATGCACGGTACCGAAGAGGCTAGCAAATTGTGGAAAGGTAGCAG
TGCGTATAATCCATGGACTCACATTAGTCATAAAGAACTCATATACTTATTGTGAAAGCCTATTAGCCCTCGAAGCAAAG
TACTACTCGCATGCCCCTAGGGAGGAGGTTAGTAGGAGTTAACCATGGCGCACCCCTGATTATAACAACACTCAAGGATT
TCAA-TCAGACATAAAAATGCTCAAACCTCCCCACCATGCCATGACCAACACTTGGATGAGAAGTTAATAACAAGCTTTA
ATACCGATATTTCTACTAACCAATGATCATGAACCAATACATA-------------------------------------
TCATATTTAGTGGTCTACATGAAAGTTTTTATTATATCCCCCTTGAATACCTATCCTTTGCGGACTAGTCTTATAACACG
TGCATATTGCCAACTACAAATTAATAGACTCTCAAAAAGATTTAAGTGAAGCATGAGAGTGTAATCATTTCTATAAAATA
T
>chr6D_1
GTCTAAGACCAAAAACGCAACTTCAACAGACGGTCCATATGTAAAAAAAATTGGACTT-CGGCCTCCTCGTGATGTAAAA
TACAACACCTCACGGTGCAAATTTACATCACGAGGTGCATCTGGTCCAAAACCAACCGCCGCCCGCGAACGCCCAACCGC
CAGTTCCTTTCCTTTCCCGCCCGCCCGCCCGCGACCTCCCGCCCGT-CGCCGCCGCCCCGCCGCCTCCACACCCCGCCCC
ACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCGTCCGCCACCGCCCCTCAGCT----CCGCCCCGCCCG--------------------
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-----------------------------------------------------GCTCCGTCCGCCACCGCCCCGGCCGCA
CGCCGCTGCCGCTCCACCGCTCTCATCGCTCTCCGATGGCGCCGAAGAAGACGCCGAAGGGCAAGTCGGGCTCCTTCGGC
GTGAGGCAGAAGCCCTCCGGTAACTTCGGAGTGGAGTTCTCCGACGCCGGGAGGCATTGGTGGATCGGCATGTACCCCTC
CGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGTGTGGCATGCCGAG-------------------------------
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>chr3D_1021
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---------------------------------------------CGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAAGATGAAGGAGATCCCGACGAAGAAGAAG---ACGACGAAGAAG---CC-TCGGTTGTCGTCAGTGCCGGC
GAGACCGACGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGCTGAGCTGGAGTACTACTGGAA
GCATGAGGCGGAGCAGAAGAAGAAGGGGGCGAAGAAGGAGGACGAGGCCGGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGA---GG------AGGAGGAGGAGGGGTGCGACGACCCGGAGAAGGAGG
AGTTATGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATATGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTTTGTCGTTTTAAGAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATCTGTTGGAGTTAAGCTTTTTTCGGAGCTCCAAAACGCACTTT
TTGACAGTCCAAATTTTACATCTCCGATTTTGGACCGCCAAATTTTGGACCATCTATTGAAGATGCTCTAA---------
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>chr5D_1021
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---------------------------------------------CGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAACATGAAGGAGATCCCGACGAAGAA-AAG---ATGACGAAGAAG---CCGTCGGTTGTCGTCAGTGCTGGC
GAGACCGACGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GCGTGAGGCGGTGCGGAAGAAGAAGGGGCCGAAGATGGAGAACGAGACCCGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGA---GG------AGG---AGGAGGGGTGCGACGACCCGACGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCCGAC------AAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTATGTCGTTTTAAAAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACACACTTT
TTGGTGGTCCAAATTTTACATCTCCGGTTTTGGACCGCCAAATTTTGGA-------------------------------
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-
>chr1A_1023
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-----------------------------------------------AGAGTCGGGCGGAAGCGGAGATGCTTGTGCTGC
AGGGCATCAAGATGAAGGAGATCCCGACGAAGAAGAAG---ACGACGAAGAAG---CCGTCGGTTGTCGTCAGTGCTGGC
AAGACCGACGAGGAGGCGATGGCGAGGTTTGCCCGGGAGCATCCGGAGTACGTCCAAGCCGAGCTGGAGTACTACTGAAA
GCGTGAGGCGGAGCAGAAGAAGAAGGGGGTGAAGAAGGAGGACGATGCCGGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGA---GG------AGGAGTAGGAGGGGGGCGACGACCCGGAGAAGGAGG
AGTTCTGGGCGCAGTTCCGCTGCTCCGACGATGAGAAGTAGTTTATATAGTAGTTTGAATTAGTAGTAGTTGAAGTTCAT
GTATGAAATTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTTTGTCGTTTTAAGAAATTTACATCTTT
ATTTTGGACCATCTATTAGAGTTGCTTTTTTGGACCATTTGTTGGAGTTGAGCTTTTTTCAGAGCTCCAAAACATACTTT
TTGACGGTTCAAATTTTACATTTTTGGTTTTGAATCGCCAAATTTTGAAACATCTATTGGAGATGCTCTAA---------
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>chr4D_1029
--------------------------------------------------------------------------------
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-----------------------------------------------------GGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAACATGAAGGAGATCACGACGAAGAAGAAG---AAGACGAAGAAG---CCGTCGGTTGTCGTCAGTGCTGGC
GAGACCGACGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GCGTGAGGCAGAGCAGAAGAAGAAGGGGCCGAAGAAGGAGGACGAGGCCGGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCTAGGAGGACTGGGCAAACTTCTCGGATGAGGAGGAGAAGG---AGGAGGGGTGCGACGACCCGACGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCTGACGATGAGGAGTAGTTTATCTAGTACTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGAACTAGTAGTATGTCGTTTTAAAAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAATGTACTTT
TTGGCGGTCCAAATTTTACATCTCCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCT-----------
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>chr3D_1029
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-----------------------------------------------------GGGCGGAAGCGGAGATGCTTGTGCTGC
AGGGCATCAACATGAAGGAGATTACGACGAAGAAGATG---AAGATGAAGAAG---CCGTCGGTTGTCGTCAGTGCTGGC
GAGACCGACGAGGAGGCGATGGCGAGGTTTTCTCGGGAGCATCCGGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GCGTGAGGCGGAGCAGAAGAAGAAGGGGTCGAAGAAGGAGGACGCGGCCGGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGACGAGGACTGGGCAAACTTCTCGGAC---GAGGAGGAGG---AGGAGGGGTGCGACGACCCGACGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTATGTCGTTTTAAGAAATTTACATCTTC
ATTTTGAACCATCTATTGGAGTTGCACTTTTGGACCATCTGTTGGAGATGAGCTGTTTTCGGAGCTCCAAAACGCATTTT
TTGGCGGTTCAAATTTTACATCTCCGATTTTGGACCGCCAAATTTTGAACCATCTATCGGAGATGCTCT-----------
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>chr7D_1029
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-----------------------------------------------------GGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAACATGAAGGAGATCACGACGAAGAAGAAG---AAGACGAAGAAG---CTGTCGGTTGTCGTCAGTGCTGGC
GAGACCGACGAGGAGGTGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGTCGACCTAGAGTACTACTGGAA
GCGTGAGGCGGAGCAGAAGAAGAAGGGGCTGAAGAAGGAGGACGAGGCCGGTCC--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTAGGCAGACTTCTCGGACGAGGAGGAGGAGG---AGGAGGGGTGCGACGACCCGATGAAGGAGG
AGTTCTGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTATGTCGTTTTAAGAAATTTACATCTTT
ATTTCGGACCATCTATTAGAGTTGCTCTTTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGAAACTCCAAAACTCACTTT
TTGGCGGTTCAAATTTTATATCTTCAGTTTTGGACCGCCAAATTTTGGACCATTTATTGGAGATGCTCTAA---------
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>chr6A_1029
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-----------------------------------------------------GGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAACATGAAGGAGATCACGACGAAGAAGAAG---AAGACGAAGAAG---CCGTCGGTTGTCGTCAGTGCTGGC
GAGACAGACGAGGAGGCTATGGCGAGGTTTGCTCGGGGGCATCCGGAGTACGTCCAGGCCGAGTTGGAGTACTACTAGAA
GCGTGAGGTGGAGCAGAAAAAGAAGGGGCCGAAGAAGGAGGACGAGGCCGGTCCTGCTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGACGAGGAGGAGGAGG---AGGAGGGGTGCGACGACCCGACGAAGGAGG
AGTTTTGGGCGCAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTATGTTGGATTTGATGTTTGAACTATGTTGAATAGACTAGTAGTATGTCGTTTCAAGAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATGTGTTGGAGTTGAGCTTTTTTCGGACCTCCAAAACGCACTTT
TTGGGGGTCCAAATTTTACATCTTCGGTTTTGGACCGCCAAATTTTGAACCATCTATTGGAGATGCTCT-----------
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>chr3A_1029
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-----------------------------------------------------GGGCGGAAGCGGAGATGCTTGTGCCGC
AGGGCATCAACATGAAGGAGATCACAACGACGAAGAAG---AAGACGAAGAAG---CTGTCGGTTGTCGTTAGTGCTGGC
GAGACCGACGAGGAGGCGATGGCGAGGTTTTCTCAGGAGCATCCGGAGTATGTCCAGGCCGAGCTGGAGTACTACTGGAA
GCGTGATGCGGAGCAGAAGAAGAAGGGGCCAAAGAAGGAGGACGAGGCCGGTCC--CTCGACGGTGATCCCCATGGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGACGAGGAGGAGGA------GGAGGGGTGCGACGACCCGACGAAGGAGG
AGTTCTGGGCGTAGTTCCGCAGCTCCGACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAACTGTGTTGAATTTGATGTTTGAACTATGTTGAATGGGCTAGCAGTATGCCGTTTTAAGAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATATGTTGAAGTTGAGCTTTTTTCAAAGCTCCAAAACACACTTT
TTGGCGGTCCAAATTTTACATCTCCAGTTTTGGACCGCCAAATTTTGGACCATTTATTGGAGATGCTCT-----------
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>chrUn_1030
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------------------------------------------------------GGCAGAAGAGGAGATGCTTGTGCCGC
AGGGCATCAAGATGAAGGAGATCTCGACGAAGAAGACG---ACGACCAAGAAG---CCGTCAGTTGTCGTCAGTGCTGGC
GAGACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAA
GCGTGAGGCGGAGCAGAAGAAGAAGGGGGCGAAGAAGGAGGACGAGGCCGGTCT--CTCGACGGTGATCCCCATCGAGTC
CTCTTCCGAGGAGGACTGGGCAGACTTCTCGGA---GGAGGAGGA------GGAGGGATGCGACGACCCGGAGAAGGAGG
AGTTTTGGGCGCAGTTCCGCAGCTCCAACGATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCAT
GTATGAAGCTATGTTGAATTTGATGTTTGAACTATGTTGAATGGACTAGTAGTTTGTGGTTTTAAGAAATTTACATCTTC
ATTTTGGACCATCTATTGGAGTTGCTCTTTTGGACCATCTATTGGAGTTGAGCTTTTTTCGGAGCTTCAAAACGTACTTT
GTGGCGGTCTAAATTTTACATCTCCGGTTTTGAACCGTCAAATTTTGGGCCATCTACTGGAGATGCCCT-----------
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>chr3D_1669
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--------------------------------------------------------------------TAGCATGTATAA
CAATGATGAACGGTGGCTGTGCCACAAATATCATGTCAGCTCTATATGATCATGCAAAGCAATATGATGATGAACACACA
TATCATGTG-ACGGAACGGTGGAAGTTGCATGGCAATATATCTCAGAATGGCTATGGAAATGCCATGATAGGTAGGTATC
GTGGCTGTTTTGAGGAAGATATAAGGAGGCTTATGTTTGATAGAGCGTATCATATCACGGGGTTTGGATGCACCGACGAA
GTTTGCACCAACTCTCG----AGGTGAGAAAGGGCAATGCATCATACCGAAGAGGCTAGCAATATGCGGAAGGATGAGAG
TGCGTATAATCCATGGACTCACATTAGTCATAAAGAACTCATATACTTATTGTGAAAGTTTATCTGCCCTCAAAGCAAAG
TACTACTCGCATGCCCCTAGAGAGGAGGTTGGTAGGAGTTAACCATCGCGCGTCCCTAATTATGACATCACTCAAGGATT
TCAA-TCAGACATAAAAATGCTCAAACCTCCCCATCATGCCATGACCAACACTGAGACGAGAAGTTAATAACAAACTTTA
ATACCTATATTTCTACTAACCAATGATCATGAACCAATACCCTTTCATATT-----------------------------
--------------------------------------------------------------------------------
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>chr7D_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGATGAATGGTGGCTGTGCCACAAATATCATGTTAGCTCTATATGATCGTGCAAAGGAATATGACGATGAACACACA
TGTCATTAAAACGGGACGGTGGAAGTTGCATGGCAATATATCTCGAAATGGCTATAGAAATACCATCATAGGTAGGTATG
GTGGCTGTTTTGAGGAACATATAAGGAGGCTTATGTGTGATAGAGTGTATCATATCATGGCGTTTGGATGCACCAGCGAA
GTTTGCACCAACTCTCG----AGGTGAGAAAGGGCAATACATGGTACCGAAGAGGCTAGCAAATTGCGGAAAGGTAGGAG
TGTGTATAATCCATGGACTCACATTAGTCATAAAGAACTCATATACTTATTGTGAAAGTCTATTAGCCCTCGAAGCAAAG
TACTACTCGCATGCCCCTAGGGAGGAGGTTGGTAGGAGTTAACCATCGTGCGCCCCCGGTTATAGCAACAC---------
TCAA-TCATAAATAAAAATGCTCAAACCTCCCCACCATGCCATGACCAAAACTTAGGTGAGAAGT---TAACAAGATTTA
ATACCAATATTT---CTAACCAATGATCATGAACCAATATCCTTTCATATTACGACATCAATATAATTAAACCATACGTT
TCATATTTAGTTATCTACATGAAAGTTTTTATTATATCCCCCATGAATACCTGTCCTTTCCGGACTAGTCTTATAACATG
TGCATATTGCCAACTACTAATTAATAGACTCTCCAAAATATTTAAGTGAAGCATGAGAGTGTAATCATTTCTATAAAATA
T
>chr5D_1669
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--------------------------------------------------------------------TAACATGAATAA
TAATGATGAATGGTGGTTGTGCCACAAATGTCATGCCAGCTCTATATTATCATGCAAAGTAATATGACGATGAACACACA
AGTCATGTG-ATGGAACGGTGGAAGTTGCATGGCAATATATCTCGGAACGGCTATGGAAATGCCATAATAGGTAGGTATG
GTGGTTGTTTTGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGCGTATCATACCACAGGGTTTGGATGCACCGACAAA
GTTTGCACCAACTCTTG----AGGTGAGAAAGGGCAATGCACGGTACCAAAGAGGCTAGCAAATTGCGGAAAGGTAGGAG
TGCGTATAATCCATGGACTCACATTAGTCATAAAGAACTCACATACTTATTGTGAAAGCCTATTAGCCATCAAAGCAAAG
TACTACTCGCATGCCCCTAGGGAATTGGTTGGTAGGAGTTAACCATCACGCGCATCCGATTAGAACAACACTCAAGGATT
TCAA-TCAGAAATACAAATGCTCAAACCTCCCCACCATGCCATGACCAATGCTTAGATCAGAAGTGAATAACAAGCTTTA
ATACCGATATTTCCACTGGCCAATGATCATGAACCAATATCCATTCATATT-----------------------------
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>chr1D_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGAAGAACGGTGGTTGTGCCACAAATATCATGTCAGCTCTATATGATTGTGCAAAGCAATATGATGATCAACACACA
AGTCATGTG-ACGGAACGGTGGAAGTTGCACGGCAATATATCTCGGAATGGCTACGAGAATGCTATGATAGGTAGGTATG
GTGGTTGTTTTAAGGAAGATATAAGGAGGCTTATGTGTGATAGAGCACATCATATCACAGGGTTTGGATGCACCGGCGAA
GTTTGCACCAACTCTCG----AGGTGAGAAAGGGCAATGCACAGTACCAAAGAGGCTAGCAAATTGCGGAAAGGTAGTAG
TGCGTATAATCCATGGACTCACATTAGTCATAAAGAACTCATATTCTTATTGTGAAAGCCTATTAGCCCTCCAATCAAAT
TACTGCTCGCATGCCCCTAGGGAGGAGGTTAGTAGGAGTTAACCATCATGCA-CCCCGATCATAACAGCACTCAAGGATT
TCAA-TCAGACATAAAAATGCTAAAACCTCCCCACCATGCCATAATCAACACTTGGATGAGAAGTTAATAACAAGCTTTA
ATACCGATATTTCTACTAACCAATGATCATGAACCAATATCCTTTCATATT-----------------------------
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>chr1D_1669
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--------------------------------------------------------------------TAACATGTATAA
TAATGATGAACGGTGGCTGAGCCACAAATATCATGTCAGCTCTATATGATCAGGCAAAGCAATATGACAATGAACACACA
TCTCATGAAAATGGAACGGTGGAAGTTGCATGGCAATATATCTCGGAATGGCTATGGAAATGCTATAATAGGTAGGTATG
GTGGTTGTTTTGAGGAAGATATAAGGAGGCTTATGTTTGATAGAGCGTATCATATCACGGGGTTTGGATGCACCGGCGAA
GTTTGCACCAACTCTCTAGCTAGGTGAGAAAGGGCAATGCACAGTACCGAAGAGGCTAGCAAATTGCGGAAAGGTAGGAG
TGCGTATAATCCATGGACTCACACTAGTCATAAAGAACTCATATACTTATTTTGAAAGTCTGTTAGCCCTCAAAGCAAAG
TACTACTCGCATACCCCTAGGGAATTGGTTGGTAGGAGTTAACCATCACGCGCATCTGATTATAACATCACTCAAGGATT
TCAA-TCAGAAATACAAATGCTCAAACCTCCCCACCATGCCATGACCAACACTTAGATGAAAAGTTAATAACAAGCTTTA
ATACCAATATTTCTACTAACCAATGATCATGAAACAATATCCTTTCATATT-----------------------------
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>chr1D_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGATGAATGGTTGCTTTTCCACAAATATCATGTCAACTCTATATGACCATGCAGAGCAATATGATGATGAACACACA
TGTCATGTG-ATGGAACGGTGGAAGTTGCATGGCAATATATTTCAGAATGGCTATGGAAATGCCATGATAGGTAGGTATG
GTGGCTATTTTGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGTGTATCATATCACGGGGTTTGGATGCACCAGCGAA
GTTTGCACCAACTCTCA----AGGTGAGAAAGAGAAATGCATGGTACCGAAGAGGCTGGTAATATGCGGAAGGATGAGAG
TGCGTATAATACATGGACTCACATTAGTCATAAAGAACTCATATACTTATTGTGAAAGTTTATTAGTCCTCGAAGCAAAG
TACTACTTGCATGCCCCTAGGGAAGAGGTTGGTAGGAGTTAACCATCGTGCACCCCCGATTATGACAACACTCAAGGATT
TCAA-TCAGACATAAAAATGCTCAAACCTCCCCACCATGCCATAACCAGCACTTAGATAAGAAGTTAATAACAAGCTTTA
ATACCAATATTTCTACTAACCAATGATCACAAACCAATATCATTTCATATTACGACATCAATATAATTGAACCATACACT
TCATATTTAGTGATCTACATGAAAGTTTTCATTATATCCCCCTTGAATACCTATCATTTTCGGACTAGTCTTATAACACG
TGCATGTTACCACTTACTATTTAAAAGACTCTCAAAAAGATTTAAGTGAAGCATGAGAGTGCAATCATTTATATAAAATA
-
>chr6D_1669
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TAACATGAATAA
CAATGGTGAACGGTGGTTATGCCACAAATATCATGTCAGCTCTATATGTTTATGCAAAGCAAAATGACAATGAACACACA
AGTCATGAAAACGGAACGGTGAAAGTTGCATGGCAATATATCTCGGAATGGCTATGGAAATGCCATAATAGGTAGGTATG
GTGGCTGTTTAGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGCATATCATATCACTGGGTTTGGATGCACCGACGAA
GTTTGCACCAACTCTCG----ACGTGAGAAAGGGCAATGCACGGTACTGAAGAGGCTACCAAATTGCGGAAAGGTAGGAG
TGCGTATAATCCATGGACTAACATTAGTCATAAAGAACTCATATACTTATTGTGAAAGCCCATTAGTCCTCGAAGCAAAG
TACTACTCGCATGCCCCTAGGGAGGAGATTGCTAGGAGTTAACCATTGCGCACCACCGATTATCACAACACTCAAGGATT
TCAA-TCAAACAT-AAAATGCTCAAACCTCCCCGCCATGCCATGACCAACACTTAGATGAGAAGTTAATAACAAGCTTTA
ATACCGATATTTCTACTAACCAATGATCATGAACCAATATCCTTTCATATT-----------------------------
--------------------------------------------------------------------------------
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>chr1B_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGGTGAATGGTGGTTGAGCCAGAAATATCATGTCAGCTCTATATGATCATGCAAAACAATATGATGATGAACACACA
AGTCATGAG-ATGGGACGGTGGAAGTTGCATGGCAATATATCTCGAAATGGCTATGGAAATGTCATAATAGGTAGGTATG
GTGACTATTTTGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGCGTATCATATCACGGGATTTGGATGCACTGGTGAA
GTTTGCACCAACTCTCG----AGGTGAGAAAGGGCAATGCACGGTACCGAAGAGGCTAGCAGATTGCGAAAAGGTAGGAG
CGCGTATAATCCATGGACTCACATTAGTCATAAAGAACTCATATACTTATGGTGAAAGCCTATTAGCCTTCAAAGCAAAG
TACTACTCGCATGCCCCTAGGGAATTGGTTGGTAGGAGTTAACCATCGCTCGCATCTGATTATAGCAGCACTCAAGGATT
TCATTTCAGACATAAATATGCTCAAACCACTCCACCATGCCATGACCAACACTTAGATGAGAAGTTAATAACAAGCTTTA
ATACCGATATTTCTACTAACCAATGATCATGAACCAATATCCTTTCATATT-----------------------------
--------------------------------------------------------------------------------
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>chr1B_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGATGAATGGTTGCTTTGCCACAAATATCATGTCAACTCTATATGACCAAGGAAAGCAATATGTTGATGAACACACA
TGTCATGTG-ACAGAACGGTGGAAGTTGCATGGCAATATATTTCAGAATGGCTATGGAAATGCCATGATAGGTAGGTATG
GTGGCTGTTTTGAGGAAGATATAAGGAGGCTTATGTGTGATAGAGTGTATCATATCACGGGGTTTGGATGCACCGGCGAA
GTTTGCACCAACTCTCA----AGGTGAGAAAGAGAAATGCATGGTACCGAAGAGGCTGGTAATATGTGGAAGCATGAGAG
TGCGTATAATACATGGACTCACATTAGTCACAAAGAACTCATATACTTATTGTGAAAGTTTATTAGTCCTCAAAGCAAAG
TACTACTCGCATGCCCCTAGGGAGGAGGTTGGTAGGAGTTAACCATCGCGCACCCCCGATTATGACAATACTCAAGGATT
TCAA-TCAGACATAAAAATTCTCAAACCTCCCCACCATGCCATGACCATCACTTAGATAAGAAGTTAATAACAAGCTTTA
ATACCGATATTTCTATGAACCAATGATCACGAACCAATTTCATATTATA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr4A_1669
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--------------------------------------------------------------------TAACATGTATAA
CAATGAAAAATGGTGGCTTTGCCACAAATATCATGTCAGGTCTATATGAACATGCAAAGCAATATGACAATGAACACACA
AGTCATGTG-ATGAAACGATGGAAGTTGCACGGCAATATATCTTGGGATGGCTATCGAAATGCCATGATAGGTAGGCATG
GTGGCTGCTTTGAGGAAGATATAAGGAGGCTTTTGTGTGATAGAGTGTATCATATCATGGAGTTTGGATGCACCAGCGAA
GTTTGCACCAACTCTCG----AGGTGAGGAAGGGCAATGCATGGTACCGGAGAGGCTAGAAAATTGCGGAAAGGTAGGAG
TGCGTATAATCCATGGACTCACATTAGTCATAAAGAACACATATACTTATTGTAAAATTCTATTAGCCCTCGAAGCAAAG
TATTACTCGCATGCCCCTAGGGAGGATGTTGGTAGCAGTTAACCATCGTGCACCCCCAATTATAACAGCACTCAAAGATT
TCAA-TCAGACATAAAAATGCTCAAACCTCCCCACCATGCCATGACCAACACTTAGATGAGAAGTTAATAACGAGATTTA
ATACCGATATTTCTACTAACCAATGATCATGAACCAATATCCTTTCATA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>SNPs
----S--S-----------S--S---S----------S------------S-S-SS-SS----------S----------
-------------------S----------------------------------S-----S-------------------
--S-------------------------------------S-----S---------S--------------------SS-
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-----S--SSSSSSSSS----------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
------S------------------S---------S----S-------------------------------S------S
----------------------------S--------------------------S--------------S---------
---------------------------------------S-S-------S--S----------------------S----
----------------------------S-------------------S----SSS------------------------
----------------------S---------------------S-----------------------------------
-S--------------------------------------------S--------------S------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-----------------------------------------------------------------------------S--
-------S------------------------------------------------------------------------
-------------------S------------------------------------------------------------
---S-------------S------------------------------S-----------------------------S-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
----------------------------------------SS--------------------------------------
------------S----------------------------------------------S--------------------
-----------------S--------------------------------------------------------------
-
>forward_20
GTCTGAGGCCAAAAACGCAG------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1762
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-TGTGAGGCAGAGCAGAAGAAG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>forward_27
-------GCCAAAAACGCAGCTCCAAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>reverse_1822
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------TGGTGATCCCCATCGAGTC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>forward_1656
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGAAGACGACGACGAAGGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_2687
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------GGCGCACCCCTGATTATAAC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
