Multiple sequence alignment - TraesCS4D01G173900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G173900 chr4D 100.000 3077 0 0 2226 5302 301736135 301733059 0.000000e+00 5683.0
1 TraesCS4D01G173900 chr4D 100.000 1893 0 0 1 1893 301738360 301736468 0.000000e+00 3496.0
2 TraesCS4D01G173900 chr4B 87.901 3149 164 95 2248 5302 376142704 376139679 0.000000e+00 3504.0
3 TraesCS4D01G173900 chr4B 90.972 1872 78 39 43 1876 376144811 376142993 0.000000e+00 2436.0
4 TraesCS4D01G173900 chr4B 81.757 296 34 13 273 551 167340665 167340957 4.130000e-56 230.0
5 TraesCS4D01G173900 chr4A 92.495 1892 81 22 38 1893 179137534 179139400 0.000000e+00 2651.0
6 TraesCS4D01G173900 chr4A 90.157 2032 116 32 2469 4452 179139747 179141742 0.000000e+00 2567.0
7 TraesCS4D01G173900 chr4A 90.122 1063 55 15 3948 4991 179141231 179142262 0.000000e+00 1336.0
8 TraesCS4D01G173900 chr4A 85.294 272 14 3 2226 2483 179139473 179139732 1.890000e-64 257.0
9 TraesCS4D01G173900 chr4A 83.333 294 25 15 273 551 17670130 17669846 3.170000e-62 250.0
10 TraesCS4D01G173900 chr4A 98.058 103 2 0 5200 5302 179142259 179142361 4.220000e-41 180.0
11 TraesCS4D01G173900 chr5A 90.244 246 22 2 44 289 565442796 565443039 2.380000e-83 320.0
12 TraesCS4D01G173900 chr5A 90.000 50 5 0 1 50 565442851 565442900 1.230000e-06 65.8
13 TraesCS4D01G173900 chr1A 90.417 240 21 2 40 278 22871686 22871448 1.110000e-81 315.0
14 TraesCS4D01G173900 chr2B 90.377 239 21 2 40 278 371565127 371565363 3.990000e-81 313.0
15 TraesCS4D01G173900 chr1B 89.583 240 23 2 40 278 23128306 23128068 2.400000e-78 303.0
16 TraesCS4D01G173900 chr7D 89.540 239 23 2 40 278 94547253 94547489 8.630000e-78 302.0
17 TraesCS4D01G173900 chr7D 86.634 202 19 8 273 472 5434222 5434417 3.220000e-52 217.0
18 TraesCS4D01G173900 chr7D 95.833 48 2 0 3 50 94547313 94547360 1.580000e-10 78.7
19 TraesCS4D01G173900 chr6B 89.831 236 23 1 40 275 234663238 234663472 8.630000e-78 302.0
20 TraesCS4D01G173900 chr6B 92.000 50 4 0 1 50 234663296 234663345 2.650000e-08 71.3
21 TraesCS4D01G173900 chr5D 86.572 283 24 10 273 551 447145093 447144821 3.100000e-77 300.0
22 TraesCS4D01G173900 chr5D 88.889 207 19 3 273 478 548985739 548985942 8.810000e-63 252.0
23 TraesCS4D01G173900 chr5D 92.157 51 4 0 1 51 136940465 136940515 7.370000e-09 73.1
24 TraesCS4D01G173900 chr5D 90.000 50 5 0 1 50 447153006 447152957 1.230000e-06 65.8
25 TraesCS4D01G173900 chr5B 88.142 253 28 2 40 291 185469690 185469941 3.100000e-77 300.0
26 TraesCS4D01G173900 chr3D 88.462 208 19 5 273 478 593048412 593048208 4.100000e-61 246.0
27 TraesCS4D01G173900 chr1D 81.293 294 38 10 273 551 294746573 294746282 6.910000e-54 222.0
28 TraesCS4D01G173900 chr6A 85.577 208 28 1 273 478 480809455 480809248 3.220000e-52 217.0
29 TraesCS4D01G173900 chr6D 94.000 50 3 0 1 50 136392132 136392181 5.690000e-10 76.8
30 TraesCS4D01G173900 chr7A 93.878 49 3 0 1 49 170614851 170614899 2.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G173900 chr4D 301733059 301738360 5301 True 4589.5 5683 100.0000 1 5302 2 chr4D.!!$R1 5301
1 TraesCS4D01G173900 chr4B 376139679 376144811 5132 True 2970.0 3504 89.4365 43 5302 2 chr4B.!!$R1 5259
2 TraesCS4D01G173900 chr4A 179137534 179142361 4827 False 1398.2 2651 91.2252 38 5302 5 chr4A.!!$F1 5264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.038744 CCTCCAGCACACCATTCCTT 59.961 55.000 0.00 0.0 0.00 3.36 F
700 734 1.878775 GCCAAGCTGTAACTGGCTG 59.121 57.895 17.41 0.0 41.99 4.85 F
1540 1596 0.033503 TGAGAGAGTGGCCGTGGATA 60.034 55.000 0.00 0.0 0.00 2.59 F
2536 2636 0.465460 TGTTGGTGTCCTGTGGAAGC 60.465 55.000 0.00 0.0 31.38 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1220 1261 0.613260 TGAACAGATCAACCGGGAGG 59.387 55.0 6.32 0.0 45.14 4.30 R
2593 2698 0.827925 AGTCCGTCTCTCCTGCAACA 60.828 55.0 0.00 0.0 0.00 3.33 R
2834 2960 1.092345 GGCTGACCTCGAATTGCTCC 61.092 60.0 0.00 0.0 0.00 4.70 R
4473 4706 0.037232 GAGCAACCTCGGTGCTAGTT 60.037 55.0 3.76 0.0 39.21 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.893601 GCCGCCGCTACTTCCTCC 62.894 72.222 0.00 0.00 0.00 4.30
27 28 3.458163 CCGCCGCTACTTCCTCCA 61.458 66.667 0.00 0.00 0.00 3.86
28 29 2.202756 CGCCGCTACTTCCTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
29 30 2.187163 GCCGCTACTTCCTCCACC 59.813 66.667 0.00 0.00 0.00 4.61
30 31 2.359967 GCCGCTACTTCCTCCACCT 61.360 63.158 0.00 0.00 0.00 4.00
31 32 1.817209 CCGCTACTTCCTCCACCTC 59.183 63.158 0.00 0.00 0.00 3.85
32 33 1.677637 CCGCTACTTCCTCCACCTCC 61.678 65.000 0.00 0.00 0.00 4.30
33 34 0.684805 CGCTACTTCCTCCACCTCCT 60.685 60.000 0.00 0.00 0.00 3.69
34 35 1.116308 GCTACTTCCTCCACCTCCTC 58.884 60.000 0.00 0.00 0.00 3.71
35 36 1.342574 GCTACTTCCTCCACCTCCTCT 60.343 57.143 0.00 0.00 0.00 3.69
36 37 2.661718 CTACTTCCTCCACCTCCTCTC 58.338 57.143 0.00 0.00 0.00 3.20
129 130 1.304509 GCTGCTGCTTTCTCCACCTC 61.305 60.000 8.53 0.00 36.03 3.85
166 167 0.038744 CCTCCAGCACACCATTCCTT 59.961 55.000 0.00 0.00 0.00 3.36
201 202 3.126879 CGGCCATTTGCAGCTCGA 61.127 61.111 2.24 0.00 43.89 4.04
396 413 5.095490 GGTTCTATTTTGAGTGCGAAATGG 58.905 41.667 0.00 0.00 38.32 3.16
407 424 1.950216 TGCGAAATGGTGTTTGTGCTA 59.050 42.857 0.00 0.00 0.00 3.49
410 427 2.095263 CGAAATGGTGTTTGTGCTAGGG 60.095 50.000 0.00 0.00 0.00 3.53
478 495 2.063541 ATATTTTGCGGCGCCTGCTC 62.064 55.000 32.36 17.85 42.25 4.26
519 547 6.619801 AGGCTATTTCGGCACTAAAAATAG 57.380 37.500 8.88 8.88 42.14 1.73
700 734 1.878775 GCCAAGCTGTAACTGGCTG 59.121 57.895 17.41 0.00 41.99 4.85
870 904 6.905736 TCAAAGATTTACAGGGCCATACATA 58.094 36.000 6.18 0.00 0.00 2.29
871 905 6.770785 TCAAAGATTTACAGGGCCATACATAC 59.229 38.462 6.18 0.00 0.00 2.39
872 906 5.904984 AGATTTACAGGGCCATACATACA 57.095 39.130 6.18 0.00 0.00 2.29
873 907 6.454223 AGATTTACAGGGCCATACATACAT 57.546 37.500 6.18 0.00 0.00 2.29
874 908 6.240894 AGATTTACAGGGCCATACATACATG 58.759 40.000 6.18 0.00 0.00 3.21
888 922 7.283127 CCATACATACATGCTGGAAAAGTAACT 59.717 37.037 0.00 0.00 36.52 2.24
891 925 7.165485 ACATACATGCTGGAAAAGTAACTACA 58.835 34.615 0.00 0.00 0.00 2.74
990 1025 4.584743 ACCATGAAGGAAGAAGAAACCAAC 59.415 41.667 0.00 0.00 41.22 3.77
1003 1044 5.444663 AGAAACCAACAAGAAGAAGATGC 57.555 39.130 0.00 0.00 0.00 3.91
1220 1261 8.866956 CATCAAAGCTATGAATTTGTTTTCTCC 58.133 33.333 0.00 0.00 37.60 3.71
1260 1305 9.159364 TGTTCATTCATCTACATCTTTCTTCAG 57.841 33.333 0.00 0.00 0.00 3.02
1266 1311 8.768957 TCATCTACATCTTTCTTCAGAAGTTG 57.231 34.615 10.09 4.66 35.21 3.16
1426 1482 0.382158 GACGTCGGAGCAGATCATCA 59.618 55.000 0.00 0.00 0.00 3.07
1500 1556 5.523438 TTTCTTTTCCGGTTTTGCTACAT 57.477 34.783 0.00 0.00 0.00 2.29
1536 1592 0.247460 TTGATGAGAGAGTGGCCGTG 59.753 55.000 0.00 0.00 0.00 4.94
1540 1596 0.033503 TGAGAGAGTGGCCGTGGATA 60.034 55.000 0.00 0.00 0.00 2.59
1576 1632 1.801025 GCGGCAAGAGAGCTAGAAGAC 60.801 57.143 0.00 0.00 34.17 3.01
1610 1666 4.904895 AGGAAAGTTAGGGTTAGGTGAC 57.095 45.455 0.00 0.00 0.00 3.67
1679 1735 9.602568 GGAGGTTACTAGGATTTTAAGAAGAAG 57.397 37.037 0.00 0.00 0.00 2.85
1779 1836 1.284313 CCTTGCTTCTTCCTCCTCCT 58.716 55.000 0.00 0.00 0.00 3.69
1805 1862 1.276859 TGGCATGAGGTGGAGCTCAT 61.277 55.000 17.19 14.24 40.54 2.90
1832 1889 0.839946 GCTAAGGAAGGAGATGGCCA 59.160 55.000 8.56 8.56 0.00 5.36
1834 1891 2.813354 GCTAAGGAAGGAGATGGCCATG 60.813 54.545 26.56 4.80 0.00 3.66
2269 2326 0.991920 GATGGGTGGGGTCAAAGAGA 59.008 55.000 0.00 0.00 0.00 3.10
2298 2355 1.154054 GCAAATGATGCGGCGACAA 60.154 52.632 12.98 0.00 46.87 3.18
2299 2356 0.526096 GCAAATGATGCGGCGACAAT 60.526 50.000 12.98 0.00 46.87 2.71
2300 2357 1.193644 CAAATGATGCGGCGACAATG 58.806 50.000 12.98 7.39 0.00 2.82
2301 2358 1.093972 AAATGATGCGGCGACAATGA 58.906 45.000 12.98 0.00 0.00 2.57
2302 2359 0.659427 AATGATGCGGCGACAATGAG 59.341 50.000 12.98 0.00 0.00 2.90
2307 2364 1.226128 GCGGCGACAATGAGAAAGC 60.226 57.895 12.98 0.00 0.00 3.51
2404 2464 0.481567 GGGTTTAGGGGGATAAGGCC 59.518 60.000 0.00 0.00 0.00 5.19
2471 2542 3.880047 ATTGTGGAAATCATGTGGCTG 57.120 42.857 0.00 0.00 0.00 4.85
2483 2554 1.616159 TGTGGCTGGGCTAAAGAAAC 58.384 50.000 0.00 0.00 0.00 2.78
2524 2624 6.238320 GCTCTAGCATATCTTTCTTGTTGGTG 60.238 42.308 0.00 0.00 41.59 4.17
2525 2625 6.711277 TCTAGCATATCTTTCTTGTTGGTGT 58.289 36.000 0.00 0.00 0.00 4.16
2526 2626 5.886960 AGCATATCTTTCTTGTTGGTGTC 57.113 39.130 0.00 0.00 0.00 3.67
2527 2627 4.702131 AGCATATCTTTCTTGTTGGTGTCC 59.298 41.667 0.00 0.00 0.00 4.02
2528 2628 4.702131 GCATATCTTTCTTGTTGGTGTCCT 59.298 41.667 0.00 0.00 0.00 3.85
2529 2629 5.392380 GCATATCTTTCTTGTTGGTGTCCTG 60.392 44.000 0.00 0.00 0.00 3.86
2530 2630 3.644966 TCTTTCTTGTTGGTGTCCTGT 57.355 42.857 0.00 0.00 0.00 4.00
2531 2631 3.278574 TCTTTCTTGTTGGTGTCCTGTG 58.721 45.455 0.00 0.00 0.00 3.66
2533 2633 1.208706 TCTTGTTGGTGTCCTGTGGA 58.791 50.000 0.00 0.00 0.00 4.02
2534 2634 1.562008 TCTTGTTGGTGTCCTGTGGAA 59.438 47.619 0.00 0.00 31.38 3.53
2536 2636 0.465460 TGTTGGTGTCCTGTGGAAGC 60.465 55.000 0.00 0.00 31.38 3.86
2593 2698 1.609208 ACATGCGCTTTCTTTGTCCT 58.391 45.000 9.73 0.00 0.00 3.85
2622 2727 1.966422 GAGACGGACTCGAGTTGTTC 58.034 55.000 21.08 15.20 40.11 3.18
2687 2792 2.105821 AGACACGTCTGAAATTTCCCCA 59.894 45.455 15.48 0.00 38.75 4.96
2689 2794 2.226330 CACGTCTGAAATTTCCCCACA 58.774 47.619 15.48 0.00 0.00 4.17
2741 2849 7.815840 TTTCTTGTTTCATCTTGACATGGTA 57.184 32.000 0.00 0.00 0.00 3.25
2834 2960 1.726791 GATGGCACGTACAAGACACTG 59.273 52.381 0.00 0.00 0.00 3.66
2923 3066 5.648330 ATAGATGGATCATGGATGGATGG 57.352 43.478 0.00 0.00 0.00 3.51
2926 3069 3.732048 TGGATCATGGATGGATGGATG 57.268 47.619 0.00 0.00 0.00 3.51
2953 3096 9.820725 GATGGATAGATGGATAGAGAAATGAAG 57.179 37.037 0.00 0.00 0.00 3.02
3067 3210 4.467198 AGAGGTTAATCGGTCGTTCATT 57.533 40.909 0.00 0.00 0.00 2.57
3068 3211 4.430908 AGAGGTTAATCGGTCGTTCATTC 58.569 43.478 0.00 0.00 0.00 2.67
3069 3212 3.528532 AGGTTAATCGGTCGTTCATTCC 58.471 45.455 0.00 0.00 0.00 3.01
3135 3290 7.588488 CAGAATGAATGAATGTTTGTTTTTGGC 59.412 33.333 0.00 0.00 39.69 4.52
3136 3291 7.499895 AGAATGAATGAATGTTTGTTTTTGGCT 59.500 29.630 0.00 0.00 0.00 4.75
3247 3402 1.067416 TCACAAGCAACTCGACGCT 59.933 52.632 0.00 0.00 41.20 5.07
3343 3498 2.402572 GCCGCTGAAGAAGAAGGCC 61.403 63.158 0.00 0.00 42.24 5.19
3344 3499 2.103042 CCGCTGAAGAAGAAGGCCG 61.103 63.158 0.00 0.00 0.00 6.13
3345 3500 2.744768 CGCTGAAGAAGAAGGCCGC 61.745 63.158 0.00 0.00 0.00 6.53
3346 3501 2.402572 GCTGAAGAAGAAGGCCGCC 61.403 63.158 0.00 0.00 0.00 6.13
3347 3502 2.047274 TGAAGAAGAAGGCCGCCG 60.047 61.111 3.05 0.00 0.00 6.46
3348 3503 2.820037 GAAGAAGAAGGCCGCCGG 60.820 66.667 0.00 0.00 0.00 6.13
3375 3530 1.372499 TCGGCGAGAAGAAACACCG 60.372 57.895 4.99 0.00 41.92 4.94
3392 3547 2.825264 GGATCGGCAAGGGAGGAG 59.175 66.667 0.00 0.00 0.00 3.69
3479 3639 3.084039 TCCAATGCACATCCAAAGAGAC 58.916 45.455 0.00 0.00 0.00 3.36
3649 3809 0.107654 GAGATGGGCAAGCTACCGTT 60.108 55.000 0.00 0.00 0.00 4.44
3705 3893 4.508551 AGGAGTAACAATCATGGATGCA 57.491 40.909 0.00 0.00 0.00 3.96
3706 3894 5.057843 AGGAGTAACAATCATGGATGCAT 57.942 39.130 0.00 0.00 0.00 3.96
3707 3895 4.825634 AGGAGTAACAATCATGGATGCATG 59.174 41.667 20.28 20.28 0.00 4.06
3708 3896 4.543692 GAGTAACAATCATGGATGCATGC 58.456 43.478 21.37 11.82 32.87 4.06
3709 3897 2.502213 AACAATCATGGATGCATGCG 57.498 45.000 21.37 14.24 32.87 4.73
3710 3898 1.395635 ACAATCATGGATGCATGCGT 58.604 45.000 21.37 13.43 32.87 5.24
3711 3899 1.066454 ACAATCATGGATGCATGCGTG 59.934 47.619 28.86 28.86 36.59 5.34
3712 3900 1.066454 CAATCATGGATGCATGCGTGT 59.934 47.619 31.65 20.06 36.63 4.49
3713 3901 0.666374 ATCATGGATGCATGCGTGTG 59.334 50.000 31.65 21.08 36.63 3.82
3714 3902 1.587876 CATGGATGCATGCGTGTGC 60.588 57.895 27.07 9.60 45.25 4.57
3729 3917 0.746204 TGTGCGTGGAAACTGAAGCA 60.746 50.000 0.00 0.00 0.00 3.91
3751 3939 2.034124 AGTTTTGGTGCAGCAACATCT 58.966 42.857 29.69 22.55 28.36 2.90
3991 4206 0.108662 CCTTTTCCGGATTGCAAGCC 60.109 55.000 23.94 23.94 0.00 4.35
4019 4234 2.125753 GACCTGCTCAGCCTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
4080 4295 1.243902 CATGTTTGGTTACACGGCCT 58.756 50.000 0.00 0.00 0.00 5.19
4105 4320 0.108585 GACAGCTCCAAGGTGACCAA 59.891 55.000 12.67 0.00 45.98 3.67
4109 4324 0.538287 GCTCCAAGGTGACCAAAGCT 60.538 55.000 3.63 0.00 0.00 3.74
4113 4328 1.108727 CAAGGTGACCAAAGCTGCCA 61.109 55.000 3.63 0.00 0.00 4.92
4115 4330 0.825010 AGGTGACCAAAGCTGCCAAG 60.825 55.000 3.63 0.00 0.00 3.61
4131 4349 0.817634 CAAGGACGCAAAGGTCACCA 60.818 55.000 0.00 0.00 38.70 4.17
4157 4375 4.077188 GCGCCGCAGACAAGTGAC 62.077 66.667 3.15 0.00 0.00 3.67
4166 4384 2.658707 GACAAGTGACGCAGGCGAC 61.659 63.158 21.62 15.00 42.83 5.19
4187 4408 2.281484 GCTGCCACTTTCGGACCA 60.281 61.111 0.00 0.00 0.00 4.02
4240 4461 3.793144 CTTCAGCCAGTTCGCCGC 61.793 66.667 0.00 0.00 0.00 6.53
4247 4468 2.262915 CAGTTCGCCGCCTCTTCT 59.737 61.111 0.00 0.00 0.00 2.85
4261 4482 2.281484 TTCTGCCCAGCCGTTCAC 60.281 61.111 0.00 0.00 0.00 3.18
4262 4483 3.113514 TTCTGCCCAGCCGTTCACA 62.114 57.895 0.00 0.00 0.00 3.58
4274 4495 2.198406 CCGTTCACAGTGAAGTCGAAA 58.802 47.619 21.81 0.00 37.00 3.46
4283 4504 3.056536 CAGTGAAGTCGAAATCTCCTGGA 60.057 47.826 0.00 0.00 0.00 3.86
4335 4556 1.272490 CTCCAGCAAGTTCACTCCGTA 59.728 52.381 0.00 0.00 0.00 4.02
4355 4584 2.912771 ACATTTTGTGTCGTGTCCTCA 58.087 42.857 0.00 0.00 35.77 3.86
4365 4594 1.001974 TCGTGTCCTCAACTCCCATTG 59.998 52.381 0.00 0.00 0.00 2.82
4376 4605 3.627395 ACTCCCATTGTATCGCTCAAA 57.373 42.857 0.00 0.00 0.00 2.69
4495 4728 1.409064 CTAGCACCGAGGTTGCTCATA 59.591 52.381 17.80 5.48 39.79 2.15
4509 4742 5.626543 GGTTGCTCATAATCAAATGTATGCG 59.373 40.000 0.00 0.00 0.00 4.73
4574 4809 3.652274 CCACAGGCCAACATAGTTTTTG 58.348 45.455 5.01 0.00 0.00 2.44
4577 4812 5.115480 CACAGGCCAACATAGTTTTTGTTT 58.885 37.500 5.01 0.00 35.18 2.83
4630 4865 6.398234 AATTAACATGCCACAACAGTTGTA 57.602 33.333 18.74 4.19 43.23 2.41
4645 4880 7.882791 ACAACAGTTGTATTCTGATTGATACCA 59.117 33.333 17.74 0.00 43.27 3.25
4710 4945 9.474313 TTCTTAAAGGAAACACTGGCATATTAT 57.526 29.630 0.00 0.00 0.00 1.28
4725 4960 8.583810 TGGCATATTATCTTCTTAACACGTAC 57.416 34.615 0.00 0.00 0.00 3.67
4768 5013 1.607251 GCTGTAAACGCCACCTACACT 60.607 52.381 0.00 0.00 0.00 3.55
5014 5259 1.135139 GTCTGAGATGGCGCAAGAGTA 59.865 52.381 10.83 0.00 43.02 2.59
5024 5269 1.869503 CGCAAGAGTACAATGCAACG 58.130 50.000 15.02 0.00 40.04 4.10
5025 5270 1.464023 CGCAAGAGTACAATGCAACGG 60.464 52.381 15.02 0.00 40.04 4.44
5051 5296 2.027377 ACCAAAGAGACCAGATGAGCAG 60.027 50.000 0.00 0.00 0.00 4.24
5126 5371 5.877012 TGAAATTAAGAGACTCCTGATGTGC 59.123 40.000 0.00 0.00 0.00 4.57
5145 5390 4.695455 TGTGCTAGTTCTTATTTGTGAGGC 59.305 41.667 0.00 0.00 0.00 4.70
5170 5415 6.237490 CGACAAGTTACTATCTAAAACTGGCG 60.237 42.308 0.00 0.00 33.85 5.69
5278 5523 4.393062 ACGCATGAAGGTGTTTATCTCAAG 59.607 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.893601 GGAGGAAGTAGCGGCGGC 62.894 72.222 9.78 8.43 40.37 6.53
10 11 3.458163 TGGAGGAAGTAGCGGCGG 61.458 66.667 9.78 0.00 0.00 6.13
11 12 2.202756 GTGGAGGAAGTAGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
12 13 2.187163 GGTGGAGGAAGTAGCGGC 59.813 66.667 0.00 0.00 0.00 6.53
13 14 1.677637 GGAGGTGGAGGAAGTAGCGG 61.678 65.000 0.00 0.00 0.00 5.52
14 15 0.684805 AGGAGGTGGAGGAAGTAGCG 60.685 60.000 0.00 0.00 0.00 4.26
15 16 1.116308 GAGGAGGTGGAGGAAGTAGC 58.884 60.000 0.00 0.00 0.00 3.58
16 17 2.661718 GAGAGGAGGTGGAGGAAGTAG 58.338 57.143 0.00 0.00 0.00 2.57
17 18 1.288335 GGAGAGGAGGTGGAGGAAGTA 59.712 57.143 0.00 0.00 0.00 2.24
18 19 0.041982 GGAGAGGAGGTGGAGGAAGT 59.958 60.000 0.00 0.00 0.00 3.01
19 20 0.338120 AGGAGAGGAGGTGGAGGAAG 59.662 60.000 0.00 0.00 0.00 3.46
20 21 0.336737 GAGGAGAGGAGGTGGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
21 22 1.927569 CGAGGAGAGGAGGTGGAGGA 61.928 65.000 0.00 0.00 0.00 3.71
22 23 1.454847 CGAGGAGAGGAGGTGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
23 24 2.124693 GCGAGGAGAGGAGGTGGAG 61.125 68.421 0.00 0.00 0.00 3.86
24 25 2.043852 GCGAGGAGAGGAGGTGGA 60.044 66.667 0.00 0.00 0.00 4.02
25 26 3.151022 GGCGAGGAGAGGAGGTGG 61.151 72.222 0.00 0.00 0.00 4.61
26 27 3.522731 CGGCGAGGAGAGGAGGTG 61.523 72.222 0.00 0.00 0.00 4.00
110 111 1.303155 AGGTGGAGAAAGCAGCAGC 60.303 57.895 0.00 0.00 42.56 5.25
112 113 1.130054 AGGAGGTGGAGAAAGCAGCA 61.130 55.000 0.00 0.00 0.00 4.41
120 121 1.610327 CGAGGAGAGGAGGTGGAGA 59.390 63.158 0.00 0.00 0.00 3.71
151 152 0.798776 GTCGAAGGAATGGTGTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
201 202 1.077357 TCAAACACCTTGTGGGCGT 60.077 52.632 0.00 0.00 37.94 5.68
354 371 3.131396 ACCAAGAAGATCGAACACACAC 58.869 45.455 0.00 0.00 0.00 3.82
363 380 7.459486 CACTCAAAATAGAACCAAGAAGATCG 58.541 38.462 0.00 0.00 0.00 3.69
396 413 2.978018 GCGCCCCTAGCACAAACAC 61.978 63.158 0.00 0.00 44.04 3.32
407 424 3.622060 ATTTACACAGCGCGCCCCT 62.622 57.895 30.33 6.46 0.00 4.79
410 427 1.810197 CTAAATTTACACAGCGCGCC 58.190 50.000 30.33 10.31 0.00 6.53
415 432 1.180166 GCGCGCTAAATTTACACAGC 58.820 50.000 26.67 0.00 0.00 4.40
539 567 2.709125 TTAGAGCACAACAGGCGCGT 62.709 55.000 8.43 0.00 36.12 6.01
557 589 1.956477 AGCACGCAAAAGAATCTGGTT 59.044 42.857 0.00 0.00 0.00 3.67
700 734 6.427547 CCTCTGAAATCATCTTAGAATGGCTC 59.572 42.308 0.00 0.00 0.00 4.70
714 748 3.072915 TCTGGAGTTTGCCTCTGAAATCA 59.927 43.478 0.00 0.00 40.30 2.57
870 904 5.621193 ACTGTAGTTACTTTTCCAGCATGT 58.379 37.500 0.00 0.00 0.00 3.21
871 905 6.183360 GCTACTGTAGTTACTTTTCCAGCATG 60.183 42.308 15.71 0.00 0.00 4.06
872 906 5.875359 GCTACTGTAGTTACTTTTCCAGCAT 59.125 40.000 15.71 0.00 0.00 3.79
873 907 5.221561 TGCTACTGTAGTTACTTTTCCAGCA 60.222 40.000 15.71 3.11 0.00 4.41
874 908 5.235516 TGCTACTGTAGTTACTTTTCCAGC 58.764 41.667 15.71 0.49 0.00 4.85
891 925 7.313646 CGCTATAACTTATGTACCATGCTACT 58.686 38.462 0.11 0.00 0.00 2.57
990 1025 3.504906 TCTTTGCAGGCATCTTCTTCTTG 59.495 43.478 0.00 0.00 0.00 3.02
1003 1044 3.618351 ACATGGATCTCTTCTTTGCAGG 58.382 45.455 0.00 0.00 0.00 4.85
1220 1261 0.613260 TGAACAGATCAACCGGGAGG 59.387 55.000 6.32 0.00 45.14 4.30
1260 1305 1.809547 GAAGCTTCTCCCTGCAACTTC 59.190 52.381 19.44 0.00 0.00 3.01
1266 1311 1.004440 ACACGAAGCTTCTCCCTGC 60.004 57.895 23.50 0.00 0.00 4.85
1426 1482 4.910195 TCCAGCATGTTGAGAATGTAGTT 58.090 39.130 11.60 0.00 0.00 2.24
1500 1556 1.522806 AACGCAACCTCGCTTGTGA 60.523 52.632 4.21 0.00 35.57 3.58
1536 1592 1.769716 CGCCCTTTCCTCCCCTATCC 61.770 65.000 0.00 0.00 0.00 2.59
1576 1632 5.986135 CCTAACTTTCCTTATCACATCCTCG 59.014 44.000 0.00 0.00 0.00 4.63
1610 1666 6.838198 TCCAATGGTTATAATTCGTCTTCG 57.162 37.500 0.00 0.00 38.55 3.79
1779 1836 1.007118 TCCACCTCATGCCACTAGAGA 59.993 52.381 0.00 0.00 0.00 3.10
1805 1862 0.971959 TCCTTCCTTAGCGCCGGTTA 60.972 55.000 2.29 0.00 0.00 2.85
1832 1889 2.381941 GCCCCAGGCCTCTCTTCAT 61.382 63.158 0.00 0.00 44.06 2.57
2237 2294 2.224621 CCACCCATCCCATAGCTAGTTG 60.225 54.545 0.00 0.00 0.00 3.16
2238 2295 2.057922 CCACCCATCCCATAGCTAGTT 58.942 52.381 0.00 0.00 0.00 2.24
2269 2326 2.731572 CATCATTTGCTCCTCAACCCT 58.268 47.619 0.00 0.00 33.73 4.34
2294 2351 2.540515 TCCGATCGCTTTCTCATTGTC 58.459 47.619 10.32 0.00 0.00 3.18
2298 2355 4.248859 CCAATATCCGATCGCTTTCTCAT 58.751 43.478 10.32 0.00 0.00 2.90
2299 2356 3.554960 CCCAATATCCGATCGCTTTCTCA 60.555 47.826 10.32 0.00 0.00 3.27
2300 2357 2.996621 CCCAATATCCGATCGCTTTCTC 59.003 50.000 10.32 0.00 0.00 2.87
2301 2358 2.632996 TCCCAATATCCGATCGCTTTCT 59.367 45.455 10.32 0.00 0.00 2.52
2302 2359 2.996621 CTCCCAATATCCGATCGCTTTC 59.003 50.000 10.32 0.00 0.00 2.62
2307 2364 3.119316 CCTCTTCTCCCAATATCCGATCG 60.119 52.174 8.51 8.51 0.00 3.69
2471 2542 1.450025 CTGGTCCGTTTCTTTAGCCC 58.550 55.000 0.00 0.00 0.00 5.19
2483 2554 3.813596 GCATAGTTGCCTGGTCCG 58.186 61.111 0.00 0.00 43.38 4.79
2499 2599 5.819901 ACCAACAAGAAAGATATGCTAGAGC 59.180 40.000 0.00 0.00 42.50 4.09
2503 2603 5.880332 GGACACCAACAAGAAAGATATGCTA 59.120 40.000 0.00 0.00 0.00 3.49
2509 2609 3.885297 CACAGGACACCAACAAGAAAGAT 59.115 43.478 0.00 0.00 0.00 2.40
2524 2624 1.450312 CCCGATGCTTCCACAGGAC 60.450 63.158 0.00 0.00 0.00 3.85
2525 2625 1.612146 TCCCGATGCTTCCACAGGA 60.612 57.895 0.00 0.00 0.00 3.86
2526 2626 1.153289 CTCCCGATGCTTCCACAGG 60.153 63.158 0.00 0.00 0.00 4.00
2527 2627 1.817099 GCTCCCGATGCTTCCACAG 60.817 63.158 0.00 0.00 0.00 3.66
2528 2628 2.268920 GCTCCCGATGCTTCCACA 59.731 61.111 0.00 0.00 0.00 4.17
2529 2629 2.109126 GTGCTCCCGATGCTTCCAC 61.109 63.158 0.00 0.00 0.00 4.02
2530 2630 2.123248 TTGTGCTCCCGATGCTTCCA 62.123 55.000 0.00 0.00 0.00 3.53
2531 2631 1.372087 CTTGTGCTCCCGATGCTTCC 61.372 60.000 0.00 0.00 0.00 3.46
2533 2633 2.042831 GCTTGTGCTCCCGATGCTT 61.043 57.895 0.00 0.00 36.03 3.91
2534 2634 2.437359 GCTTGTGCTCCCGATGCT 60.437 61.111 0.00 0.00 36.03 3.79
2536 2636 3.869272 GCGCTTGTGCTCCCGATG 61.869 66.667 0.00 0.00 36.97 3.84
2593 2698 0.827925 AGTCCGTCTCTCCTGCAACA 60.828 55.000 0.00 0.00 0.00 3.33
2622 2727 2.661566 GATGTCATCCGGCATCGCG 61.662 63.158 0.00 0.00 33.25 5.87
2668 2773 2.227194 GTGGGGAAATTTCAGACGTGT 58.773 47.619 19.49 0.00 0.00 4.49
2687 2792 6.814644 TCAACGTTTCCATCTATAAATCGTGT 59.185 34.615 0.00 0.00 0.00 4.49
2689 2794 6.814644 TGTCAACGTTTCCATCTATAAATCGT 59.185 34.615 0.00 0.00 0.00 3.73
2741 2849 1.604593 GCAATCACCCACCTGCACT 60.605 57.895 0.00 0.00 34.87 4.40
2834 2960 1.092345 GGCTGACCTCGAATTGCTCC 61.092 60.000 0.00 0.00 0.00 4.70
2903 3046 3.538387 TCCATCCATCCATGATCCATCT 58.462 45.455 0.00 0.00 0.00 2.90
2904 3047 4.207955 CATCCATCCATCCATGATCCATC 58.792 47.826 0.00 0.00 0.00 3.51
2907 3050 2.579400 TCCATCCATCCATCCATGATCC 59.421 50.000 0.00 0.00 0.00 3.36
2908 3051 4.207955 CATCCATCCATCCATCCATGATC 58.792 47.826 0.00 0.00 0.00 2.92
2909 3052 3.052869 CCATCCATCCATCCATCCATGAT 60.053 47.826 0.00 0.00 0.00 2.45
2910 3053 2.310647 CCATCCATCCATCCATCCATGA 59.689 50.000 0.00 0.00 0.00 3.07
2911 3054 2.310647 TCCATCCATCCATCCATCCATG 59.689 50.000 0.00 0.00 0.00 3.66
2912 3055 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
2913 3056 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
2914 3057 4.042884 TCTATCCATCCATCCATCCATCC 58.957 47.826 0.00 0.00 0.00 3.51
2915 3058 5.456330 CCATCTATCCATCCATCCATCCATC 60.456 48.000 0.00 0.00 0.00 3.51
2916 3059 4.415846 CCATCTATCCATCCATCCATCCAT 59.584 45.833 0.00 0.00 0.00 3.41
2917 3060 3.784202 CCATCTATCCATCCATCCATCCA 59.216 47.826 0.00 0.00 0.00 3.41
2918 3061 4.042884 TCCATCTATCCATCCATCCATCC 58.957 47.826 0.00 0.00 0.00 3.51
2919 3062 5.908562 ATCCATCTATCCATCCATCCATC 57.091 43.478 0.00 0.00 0.00 3.51
2920 3063 6.700706 TCTATCCATCTATCCATCCATCCAT 58.299 40.000 0.00 0.00 0.00 3.41
2921 3064 6.068021 TCTCTATCCATCTATCCATCCATCCA 60.068 42.308 0.00 0.00 0.00 3.41
2922 3065 6.380414 TCTCTATCCATCTATCCATCCATCC 58.620 44.000 0.00 0.00 0.00 3.51
2923 3066 7.911130 TTCTCTATCCATCTATCCATCCATC 57.089 40.000 0.00 0.00 0.00 3.51
2926 3069 8.316497 TCATTTCTCTATCCATCTATCCATCC 57.684 38.462 0.00 0.00 0.00 3.51
3007 3150 2.756760 CTGGCTGTTTATGGACATTGCT 59.243 45.455 0.00 0.00 0.00 3.91
3067 3210 4.946160 ATGGTTGGTTAATTGAGGAGGA 57.054 40.909 0.00 0.00 0.00 3.71
3068 3211 5.755849 AGTATGGTTGGTTAATTGAGGAGG 58.244 41.667 0.00 0.00 0.00 4.30
3069 3212 9.490379 GTATAGTATGGTTGGTTAATTGAGGAG 57.510 37.037 0.00 0.00 0.00 3.69
3352 3507 4.771356 TTCTTCTCGCCGACGCCG 62.771 66.667 0.00 0.00 39.84 6.46
3353 3508 2.431942 TTTCTTCTCGCCGACGCC 60.432 61.111 0.00 0.00 39.84 5.68
3354 3509 2.019951 TGTTTCTTCTCGCCGACGC 61.020 57.895 0.00 0.00 39.84 5.19
3355 3510 1.615107 GGTGTTTCTTCTCGCCGACG 61.615 60.000 0.00 0.00 42.01 5.12
3356 3511 2.151295 GGTGTTTCTTCTCGCCGAC 58.849 57.895 0.00 0.00 0.00 4.79
3357 3512 4.667420 GGTGTTTCTTCTCGCCGA 57.333 55.556 0.00 0.00 0.00 5.54
3375 3530 2.034048 GACTCCTCCCTTGCCGATCC 62.034 65.000 0.00 0.00 0.00 3.36
3392 3547 3.084579 CGATGGCGTGCTTCTGAC 58.915 61.111 0.00 0.00 0.00 3.51
3479 3639 1.135603 CACGTCAGCATTCACCAATGG 60.136 52.381 0.00 0.00 40.03 3.16
3668 3828 6.668283 TGTTACTCCTATAGTTGAGAGGCTTT 59.332 38.462 11.63 0.00 39.80 3.51
3671 3831 6.466885 TTGTTACTCCTATAGTTGAGAGGC 57.533 41.667 11.63 3.66 39.80 4.70
3673 3833 9.689976 CATGATTGTTACTCCTATAGTTGAGAG 57.310 37.037 11.63 7.40 39.80 3.20
3674 3834 8.642432 CCATGATTGTTACTCCTATAGTTGAGA 58.358 37.037 11.63 0.00 39.80 3.27
3679 3839 7.016563 TGCATCCATGATTGTTACTCCTATAGT 59.983 37.037 0.00 0.00 42.62 2.12
3705 3893 1.891919 AGTTTCCACGCACACGCAT 60.892 52.632 0.00 0.00 45.53 4.73
3706 3894 2.512745 AGTTTCCACGCACACGCA 60.513 55.556 0.00 0.00 45.53 5.24
3707 3895 2.042520 TTCAGTTTCCACGCACACGC 62.043 55.000 0.00 0.00 45.53 5.34
3709 3897 0.317020 GCTTCAGTTTCCACGCACAC 60.317 55.000 0.00 0.00 0.00 3.82
3710 3898 0.746204 TGCTTCAGTTTCCACGCACA 60.746 50.000 0.00 0.00 0.00 4.57
3711 3899 0.380378 TTGCTTCAGTTTCCACGCAC 59.620 50.000 0.00 0.00 0.00 5.34
3712 3900 1.065401 CTTTGCTTCAGTTTCCACGCA 59.935 47.619 0.00 0.00 0.00 5.24
3713 3901 1.065551 ACTTTGCTTCAGTTTCCACGC 59.934 47.619 0.00 0.00 0.00 5.34
3714 3902 3.420839 AACTTTGCTTCAGTTTCCACG 57.579 42.857 0.00 0.00 29.75 4.94
3719 3907 3.684305 GCACCAAAACTTTGCTTCAGTTT 59.316 39.130 3.50 3.50 44.67 2.66
3729 3917 2.758736 TGTTGCTGCACCAAAACTTT 57.241 40.000 0.00 0.00 0.00 2.66
3887 4075 1.706443 CGAAACCGTTCCAGTAGGAC 58.294 55.000 0.00 0.00 45.73 3.85
3994 4209 3.343788 CTGAGCAGGTCGTCCGTCC 62.344 68.421 0.00 0.00 39.05 4.79
4019 4234 3.589881 GGCGTGCCCATCAGCATC 61.590 66.667 0.00 0.00 46.24 3.91
4080 4295 0.178921 ACCTTGGAGCTGTCCTCAGA 60.179 55.000 0.00 0.00 44.30 3.27
4105 4320 1.799258 CTTTGCGTCCTTGGCAGCTT 61.799 55.000 0.00 0.00 42.12 3.74
4109 4324 1.896660 GACCTTTGCGTCCTTGGCA 60.897 57.895 0.00 0.00 38.93 4.92
4113 4328 0.110486 ATGGTGACCTTTGCGTCCTT 59.890 50.000 2.11 0.00 31.35 3.36
4115 4330 0.605319 TGATGGTGACCTTTGCGTCC 60.605 55.000 2.11 0.00 31.35 4.79
4131 4349 2.816958 CTGCGGCGCTTCTGTGAT 60.817 61.111 33.26 0.00 0.00 3.06
4169 4387 3.423154 GGTCCGAAAGTGGCAGCG 61.423 66.667 0.00 0.00 0.00 5.18
4172 4390 0.953471 CGAATGGTCCGAAAGTGGCA 60.953 55.000 0.00 0.00 0.00 4.92
4240 4461 3.259633 AACGGCTGGGCAGAAGAGG 62.260 63.158 0.00 0.00 0.00 3.69
4247 4468 3.872603 ACTGTGAACGGCTGGGCA 61.873 61.111 0.00 0.00 0.00 5.36
4261 4482 3.056536 TCCAGGAGATTTCGACTTCACTG 60.057 47.826 0.00 0.00 0.00 3.66
4262 4483 3.165875 TCCAGGAGATTTCGACTTCACT 58.834 45.455 0.00 0.00 0.00 3.41
4283 4504 4.398044 GTCCTTCATTCTCGTCTCTTCTCT 59.602 45.833 0.00 0.00 0.00 3.10
4355 4584 3.627395 TTGAGCGATACAATGGGAGTT 57.373 42.857 0.00 0.00 0.00 3.01
4376 4605 5.552870 AATACTATCATTTCCCGCTGACT 57.447 39.130 0.00 0.00 0.00 3.41
4471 4704 2.162716 CAACCTCGGTGCTAGTTGC 58.837 57.895 0.00 0.00 43.25 4.17
4472 4705 0.320771 AGCAACCTCGGTGCTAGTTG 60.321 55.000 1.49 0.00 41.94 3.16
4473 4706 0.037232 GAGCAACCTCGGTGCTAGTT 60.037 55.000 3.76 0.00 39.21 2.24
4474 4707 1.185618 TGAGCAACCTCGGTGCTAGT 61.186 55.000 3.76 0.00 41.13 2.57
4475 4708 0.176680 ATGAGCAACCTCGGTGCTAG 59.823 55.000 3.76 0.00 41.13 3.42
4476 4709 1.480789 TATGAGCAACCTCGGTGCTA 58.519 50.000 3.76 0.00 41.13 3.49
4477 4710 0.613260 TTATGAGCAACCTCGGTGCT 59.387 50.000 3.33 3.33 41.13 4.40
4478 4711 1.599542 GATTATGAGCAACCTCGGTGC 59.400 52.381 0.00 0.00 41.13 5.01
4479 4712 2.905075 TGATTATGAGCAACCTCGGTG 58.095 47.619 0.00 0.00 41.13 4.94
4480 4713 3.627395 TTGATTATGAGCAACCTCGGT 57.373 42.857 0.00 0.00 41.13 4.69
4481 4714 4.336433 ACATTTGATTATGAGCAACCTCGG 59.664 41.667 0.00 0.00 41.13 4.63
4482 4715 5.490139 ACATTTGATTATGAGCAACCTCG 57.510 39.130 0.00 0.00 41.13 4.63
4495 4728 5.393027 GGTTGGAACTCGCATACATTTGATT 60.393 40.000 0.00 0.00 0.00 2.57
4509 4742 3.409026 AGTCTGTGATGGTTGGAACTC 57.591 47.619 0.00 0.00 0.00 3.01
4568 4803 7.865875 ATTTCTTGGCAAAACAAACAAAAAC 57.134 28.000 0.00 0.00 0.00 2.43
4574 4809 8.279800 GGTATGTTATTTCTTGGCAAAACAAAC 58.720 33.333 15.86 10.44 31.33 2.93
4577 4812 7.055667 TGGTATGTTATTTCTTGGCAAAACA 57.944 32.000 14.65 14.65 0.00 2.83
4645 4880 5.363939 GAGTCCAGTCTGCTAATATGCTTT 58.636 41.667 0.00 0.00 0.00 3.51
4710 4945 4.692625 AGAGCTACGTACGTGTTAAGAAGA 59.307 41.667 30.25 6.36 0.00 2.87
4768 5013 4.331108 TGGCTGATGCAGTAATTGTTACA 58.669 39.130 0.00 0.00 41.91 2.41
5014 5259 2.969628 TGGTTTTTCCGTTGCATTGT 57.030 40.000 0.00 0.00 39.52 2.71
5024 5269 4.827284 TCATCTGGTCTCTTTGGTTTTTCC 59.173 41.667 0.00 0.00 0.00 3.13
5025 5270 5.563671 GCTCATCTGGTCTCTTTGGTTTTTC 60.564 44.000 0.00 0.00 0.00 2.29
5051 5296 6.266323 GTTTCTTTTCTTCCTCACCAGTTTC 58.734 40.000 0.00 0.00 0.00 2.78
5126 5371 5.168569 TGTCGCCTCACAAATAAGAACTAG 58.831 41.667 0.00 0.00 0.00 2.57
5145 5390 6.237490 CGCCAGTTTTAGATAGTAACTTGTCG 60.237 42.308 0.00 0.00 30.08 4.35
5170 5415 7.145985 TGATACCATCTTCTGTAATTCGTAGC 58.854 38.462 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.