Multiple sequence alignment - TraesCS4D01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G169100 chr4D 100.000 4788 0 0 1 4788 294001742 294006529 0.000000e+00 8842.0
1 TraesCS4D01G169100 chr4D 88.776 98 7 3 2165 2259 359359964 359359868 3.030000e-22 117.0
2 TraesCS4D01G169100 chr4B 92.241 2088 56 26 2734 4782 275999188 276001208 0.000000e+00 2861.0
3 TraesCS4D01G169100 chr4B 93.862 1401 37 10 756 2138 275997202 275998571 0.000000e+00 2065.0
4 TraesCS4D01G169100 chr4B 93.682 459 20 5 2281 2736 275998613 275999065 0.000000e+00 678.0
5 TraesCS4D01G169100 chr4B 84.058 138 19 2 2281 2417 34729949 34729814 3.890000e-26 130.0
6 TraesCS4D01G169100 chr4B 95.122 82 3 1 2178 2258 477147227 477147146 1.400000e-25 128.0
7 TraesCS4D01G169100 chr4A 92.711 1125 34 13 635 1733 324705481 324706583 0.000000e+00 1580.0
8 TraesCS4D01G169100 chr4A 86.862 921 57 26 3082 3974 324708014 324708898 0.000000e+00 972.0
9 TraesCS4D01G169100 chr4A 88.000 650 63 3 2 645 324639764 324640404 0.000000e+00 754.0
10 TraesCS4D01G169100 chr4A 91.781 438 27 3 2535 2972 324707460 324707888 6.860000e-168 601.0
11 TraesCS4D01G169100 chr4A 92.166 434 16 6 1727 2157 324706879 324707297 8.870000e-167 597.0
12 TraesCS4D01G169100 chr4A 87.395 119 6 2 3973 4082 324712928 324713046 1.400000e-25 128.0
13 TraesCS4D01G169100 chr4A 90.526 95 7 1 2178 2270 650040899 650040993 1.810000e-24 124.0
14 TraesCS4D01G169100 chr6A 82.410 307 47 5 15 318 80096033 80095731 1.320000e-65 261.0
15 TraesCS4D01G169100 chr6A 84.232 241 22 4 423 661 610523021 610522795 2.240000e-53 220.0
16 TraesCS4D01G169100 chr3D 80.000 275 42 7 48 318 614683875 614684140 1.760000e-44 191.0
17 TraesCS4D01G169100 chr6D 83.168 202 27 6 102 298 126362032 126362231 1.370000e-40 178.0
18 TraesCS4D01G169100 chr6D 83.453 139 10 11 2135 2273 414790726 414790851 3.030000e-22 117.0
19 TraesCS4D01G169100 chr1D 94.318 88 2 3 2178 2263 276768804 276768890 1.080000e-26 132.0
20 TraesCS4D01G169100 chr1D 95.062 81 3 1 2178 2258 276768863 276768784 5.030000e-25 126.0
21 TraesCS4D01G169100 chr5D 96.250 80 1 1 2178 2255 382879358 382879279 3.890000e-26 130.0
22 TraesCS4D01G169100 chr3B 84.962 133 8 8 2137 2259 229819912 229819782 1.810000e-24 124.0
23 TraesCS4D01G169100 chr7A 89.691 97 6 3 2178 2270 627164584 627164488 2.340000e-23 121.0
24 TraesCS4D01G169100 chr2A 84.426 122 12 7 2136 2256 591607531 591607416 3.920000e-21 113.0
25 TraesCS4D01G169100 chr7B 77.241 145 14 18 72 202 527651049 527650910 3.090000e-07 67.6
26 TraesCS4D01G169100 chr6B 94.444 36 0 2 2126 2159 514689377 514689342 2.000000e-03 54.7
27 TraesCS4D01G169100 chr2D 100.000 29 0 0 2389 2417 600325833 600325805 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G169100 chr4D 294001742 294006529 4787 False 8842.0 8842 100.000000 1 4788 1 chr4D.!!$F1 4787
1 TraesCS4D01G169100 chr4B 275997202 276001208 4006 False 1868.0 2861 93.261667 756 4782 3 chr4B.!!$F1 4026
2 TraesCS4D01G169100 chr4A 324705481 324708898 3417 False 937.5 1580 90.880000 635 3974 4 chr4A.!!$F4 3339
3 TraesCS4D01G169100 chr4A 324639764 324640404 640 False 754.0 754 88.000000 2 645 1 chr4A.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 516 0.031414 AGAGTAACCGGGTAGCCCAT 60.031 55.000 6.32 0.00 45.83 4.00 F
742 743 0.033699 GTCTCTACACCCGGGGTAGT 60.034 60.000 31.62 25.75 39.36 2.73 F
1335 1380 0.247736 GTCGTTCAGATGTGGCTCCT 59.752 55.000 0.00 0.00 0.00 3.69 F
1551 1596 0.620556 GCCCCTCATCCAACTTCTCA 59.379 55.000 0.00 0.00 0.00 3.27 F
2151 2509 1.829222 GTTCATACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 0.00 3.53 F
3479 4048 0.236711 GCTGTGCTGTGCTGTGTTAG 59.763 55.000 0.00 0.00 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2310 0.249868 TTCACGCACACAAGGAGGAG 60.250 55.000 0.0 0.0 0.00 3.69 R
1957 2312 0.532862 ACTTCACGCACACAAGGAGG 60.533 55.000 0.0 0.0 0.00 4.30 R
3316 3885 0.250295 CAGACCCTTGGCGTTTCTCA 60.250 55.000 0.0 0.0 0.00 3.27 R
3331 3900 2.563179 TCACAGTAGAGGAAAGGCAGAC 59.437 50.000 0.0 0.0 0.00 3.51 R
3600 4177 1.600957 CATTACAGCTTCCATCCGCAG 59.399 52.381 0.0 0.0 0.00 5.18 R
4588 5211 1.595311 ATGGGTGCATCTGGGACTTA 58.405 50.000 0.0 0.0 38.05 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.097547 CGGCTCATTCATCACCCACC 61.098 60.000 0.00 0.00 0.00 4.61
42 43 0.753111 GGCTCATTCATCACCCACCC 60.753 60.000 0.00 0.00 0.00 4.61
43 44 0.753111 GCTCATTCATCACCCACCCC 60.753 60.000 0.00 0.00 0.00 4.95
44 45 0.106519 CTCATTCATCACCCACCCCC 60.107 60.000 0.00 0.00 0.00 5.40
45 46 0.552367 TCATTCATCACCCACCCCCT 60.552 55.000 0.00 0.00 0.00 4.79
46 47 0.106519 CATTCATCACCCACCCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
47 48 1.289244 ATTCATCACCCACCCCCTCC 61.289 60.000 0.00 0.00 0.00 4.30
48 49 2.613696 CATCACCCACCCCCTCCA 60.614 66.667 0.00 0.00 0.00 3.86
49 50 2.614013 ATCACCCACCCCCTCCAC 60.614 66.667 0.00 0.00 0.00 4.02
61 62 1.239296 CCCTCCACACACACATGCAG 61.239 60.000 0.00 0.00 0.00 4.41
93 94 0.753848 AGCTAGCTCCGTCTTCCTCC 60.754 60.000 12.68 0.00 0.00 4.30
109 110 0.111253 CTCCTCCACCCAAACAGCTT 59.889 55.000 0.00 0.00 0.00 3.74
114 115 0.178992 CCACCCAAACAGCTTCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
130 131 1.207488 AGGAGCACCATTGTAGCCCA 61.207 55.000 2.07 0.00 38.94 5.36
134 135 0.527565 GCACCATTGTAGCCCACTTG 59.472 55.000 0.00 0.00 0.00 3.16
140 141 3.346315 CATTGTAGCCCACTTGTGATCA 58.654 45.455 1.89 0.00 0.00 2.92
146 147 4.082665 AGCCCACTTGTGATCATCATAG 57.917 45.455 0.00 0.00 0.00 2.23
156 157 4.158579 TGTGATCATCATAGTAGATCCGGC 59.841 45.833 0.00 0.00 37.86 6.13
171 172 2.722201 CGGCAGGACTAGGGGTGTC 61.722 68.421 0.00 0.00 0.00 3.67
173 174 1.597461 GCAGGACTAGGGGTGTCAC 59.403 63.158 0.00 0.00 36.26 3.67
176 177 0.041386 AGGACTAGGGGTGTCACCTC 59.959 60.000 21.40 18.29 39.74 3.85
177 178 0.976590 GGACTAGGGGTGTCACCTCC 60.977 65.000 18.86 18.05 40.56 4.30
181 182 3.391382 GGGGTGTCACCTCCCTCG 61.391 72.222 21.40 0.00 42.91 4.63
271 272 1.603739 GTCCTTCAGCCCCAACCAC 60.604 63.158 0.00 0.00 0.00 4.16
275 276 1.076632 TTCAGCCCCAACCACGTTT 60.077 52.632 0.00 0.00 0.00 3.60
283 284 1.201414 CCCAACCACGTTTGATAAGCC 59.799 52.381 1.50 0.00 0.00 4.35
284 285 2.159382 CCAACCACGTTTGATAAGCCT 58.841 47.619 1.50 0.00 0.00 4.58
298 299 4.223700 TGATAAGCCTACCCATAGCATCTG 59.776 45.833 0.00 0.00 0.00 2.90
304 305 1.146930 CCCATAGCATCTGCCGTGT 59.853 57.895 0.00 0.00 43.38 4.49
305 306 1.162181 CCCATAGCATCTGCCGTGTG 61.162 60.000 0.00 0.00 43.38 3.82
321 322 2.983030 TGCACCCCACGACATTGC 60.983 61.111 0.00 0.00 0.00 3.56
323 324 1.376683 GCACCCCACGACATTGCTA 60.377 57.895 0.00 0.00 0.00 3.49
337 338 6.205853 ACGACATTGCTATTAACCTGACAAAA 59.794 34.615 0.00 0.00 0.00 2.44
350 351 9.796120 TTAACCTGACAAAACAAATGTTTAGAG 57.204 29.630 11.60 7.87 46.47 2.43
354 355 6.801575 TGACAAAACAAATGTTTAGAGGACC 58.198 36.000 11.60 0.00 46.47 4.46
373 374 7.718753 AGAGGACCAATAATCATTGAATCTGAC 59.281 37.037 0.00 0.00 43.67 3.51
378 379 7.013083 ACCAATAATCATTGAATCTGACTGCTC 59.987 37.037 0.00 0.00 43.67 4.26
380 381 7.731882 ATAATCATTGAATCTGACTGCTCTG 57.268 36.000 0.00 0.00 0.00 3.35
381 382 3.268330 TCATTGAATCTGACTGCTCTGC 58.732 45.455 0.00 0.00 0.00 4.26
384 385 1.008329 GAATCTGACTGCTCTGCTGC 58.992 55.000 0.00 0.00 0.00 5.25
419 420 3.575965 ATTCTTCGGCCATCAACAAAC 57.424 42.857 2.24 0.00 0.00 2.93
420 421 0.871722 TCTTCGGCCATCAACAAACG 59.128 50.000 2.24 0.00 0.00 3.60
421 422 0.109781 CTTCGGCCATCAACAAACGG 60.110 55.000 2.24 0.00 0.00 4.44
422 423 1.519751 TTCGGCCATCAACAAACGGG 61.520 55.000 2.24 0.00 0.00 5.28
423 424 2.265182 CGGCCATCAACAAACGGGT 61.265 57.895 2.24 0.00 0.00 5.28
424 425 1.288752 GGCCATCAACAAACGGGTG 59.711 57.895 0.00 0.00 0.00 4.61
425 426 1.288752 GCCATCAACAAACGGGTGG 59.711 57.895 0.00 0.00 0.00 4.61
426 427 1.963679 CCATCAACAAACGGGTGGG 59.036 57.895 0.00 0.00 0.00 4.61
427 428 1.288752 CATCAACAAACGGGTGGGC 59.711 57.895 0.00 0.00 0.00 5.36
428 429 1.906333 ATCAACAAACGGGTGGGCC 60.906 57.895 0.00 0.00 0.00 5.80
429 430 3.972276 CAACAAACGGGTGGGCCG 61.972 66.667 0.00 0.00 34.97 6.13
430 431 4.509580 AACAAACGGGTGGGCCGT 62.510 61.111 0.00 0.00 46.18 5.68
431 432 4.941309 ACAAACGGGTGGGCCGTC 62.941 66.667 0.00 0.00 43.33 4.79
432 433 4.636435 CAAACGGGTGGGCCGTCT 62.636 66.667 0.00 0.00 43.33 4.18
433 434 2.924101 AAACGGGTGGGCCGTCTA 60.924 61.111 0.00 0.00 43.33 2.59
434 435 2.295602 AAACGGGTGGGCCGTCTAT 61.296 57.895 0.00 0.00 43.33 1.98
435 436 2.530958 AAACGGGTGGGCCGTCTATG 62.531 60.000 0.00 0.00 43.33 2.23
436 437 3.151710 CGGGTGGGCCGTCTATGA 61.152 66.667 0.00 0.00 34.97 2.15
437 438 2.727392 CGGGTGGGCCGTCTATGAA 61.727 63.158 0.00 0.00 34.97 2.57
438 439 1.146263 GGGTGGGCCGTCTATGAAG 59.854 63.158 0.00 0.00 34.97 3.02
439 440 1.335132 GGGTGGGCCGTCTATGAAGA 61.335 60.000 0.00 0.00 34.97 2.87
440 441 0.759346 GGTGGGCCGTCTATGAAGAT 59.241 55.000 0.00 0.00 33.30 2.40
441 442 1.541233 GGTGGGCCGTCTATGAAGATG 60.541 57.143 0.00 0.00 38.32 2.90
442 443 0.106708 TGGGCCGTCTATGAAGATGC 59.893 55.000 0.00 0.00 37.42 3.91
443 444 0.394565 GGGCCGTCTATGAAGATGCT 59.605 55.000 0.00 0.00 37.42 3.79
444 445 1.618837 GGGCCGTCTATGAAGATGCTA 59.381 52.381 0.00 0.00 37.42 3.49
445 446 2.037251 GGGCCGTCTATGAAGATGCTAA 59.963 50.000 0.00 0.00 37.42 3.09
446 447 3.321497 GGCCGTCTATGAAGATGCTAAG 58.679 50.000 0.00 0.00 37.42 2.18
447 448 2.734079 GCCGTCTATGAAGATGCTAAGC 59.266 50.000 0.00 0.00 37.42 3.09
448 449 2.983136 CCGTCTATGAAGATGCTAAGCG 59.017 50.000 0.00 0.00 37.42 4.68
449 450 3.304726 CCGTCTATGAAGATGCTAAGCGA 60.305 47.826 0.00 0.00 37.42 4.93
450 451 3.911365 CGTCTATGAAGATGCTAAGCGAG 59.089 47.826 0.00 0.00 33.30 5.03
458 459 4.402192 GCTAAGCGAGCGATCACA 57.598 55.556 0.00 0.00 42.62 3.58
459 460 2.892305 GCTAAGCGAGCGATCACAT 58.108 52.632 0.00 0.00 42.62 3.21
460 461 2.051879 GCTAAGCGAGCGATCACATA 57.948 50.000 0.00 0.00 42.62 2.29
461 462 2.394708 GCTAAGCGAGCGATCACATAA 58.605 47.619 0.00 0.00 42.62 1.90
462 463 2.989840 GCTAAGCGAGCGATCACATAAT 59.010 45.455 0.00 0.00 42.62 1.28
463 464 3.430218 GCTAAGCGAGCGATCACATAATT 59.570 43.478 0.00 0.00 42.62 1.40
464 465 4.433544 GCTAAGCGAGCGATCACATAATTC 60.434 45.833 0.00 0.00 42.62 2.17
465 466 3.097877 AGCGAGCGATCACATAATTCA 57.902 42.857 0.00 0.00 0.00 2.57
466 467 3.055591 AGCGAGCGATCACATAATTCAG 58.944 45.455 0.00 0.00 0.00 3.02
467 468 2.156504 GCGAGCGATCACATAATTCAGG 59.843 50.000 0.00 0.00 0.00 3.86
468 469 3.384668 CGAGCGATCACATAATTCAGGT 58.615 45.455 0.00 0.00 0.00 4.00
469 470 4.546570 CGAGCGATCACATAATTCAGGTA 58.453 43.478 0.00 0.00 0.00 3.08
470 471 5.164233 CGAGCGATCACATAATTCAGGTAT 58.836 41.667 0.00 0.00 0.00 2.73
471 472 5.635280 CGAGCGATCACATAATTCAGGTATT 59.365 40.000 0.00 0.00 0.00 1.89
472 473 6.400409 CGAGCGATCACATAATTCAGGTATTG 60.400 42.308 0.00 0.00 0.00 1.90
473 474 5.180117 AGCGATCACATAATTCAGGTATTGC 59.820 40.000 0.00 0.00 0.00 3.56
474 475 5.617751 GCGATCACATAATTCAGGTATTGCC 60.618 44.000 0.00 0.00 37.58 4.52
489 490 6.509418 GGTATTGCCTTGTTGTGAAGATAA 57.491 37.500 0.00 0.00 0.00 1.75
490 491 6.555315 GGTATTGCCTTGTTGTGAAGATAAG 58.445 40.000 0.00 0.00 0.00 1.73
491 492 6.151144 GGTATTGCCTTGTTGTGAAGATAAGT 59.849 38.462 0.00 0.00 0.00 2.24
492 493 7.335924 GGTATTGCCTTGTTGTGAAGATAAGTA 59.664 37.037 0.00 0.00 0.00 2.24
493 494 6.801539 TTGCCTTGTTGTGAAGATAAGTAG 57.198 37.500 0.00 0.00 0.00 2.57
494 495 6.109156 TGCCTTGTTGTGAAGATAAGTAGA 57.891 37.500 0.00 0.00 0.00 2.59
495 496 6.166279 TGCCTTGTTGTGAAGATAAGTAGAG 58.834 40.000 0.00 0.00 0.00 2.43
496 497 6.014584 TGCCTTGTTGTGAAGATAAGTAGAGA 60.015 38.462 0.00 0.00 0.00 3.10
497 498 6.533367 GCCTTGTTGTGAAGATAAGTAGAGAG 59.467 42.308 0.00 0.00 0.00 3.20
498 499 7.577807 GCCTTGTTGTGAAGATAAGTAGAGAGA 60.578 40.741 0.00 0.00 0.00 3.10
499 500 7.973388 CCTTGTTGTGAAGATAAGTAGAGAGAG 59.027 40.741 0.00 0.00 0.00 3.20
500 501 8.410673 TTGTTGTGAAGATAAGTAGAGAGAGT 57.589 34.615 0.00 0.00 0.00 3.24
501 502 9.516546 TTGTTGTGAAGATAAGTAGAGAGAGTA 57.483 33.333 0.00 0.00 0.00 2.59
502 503 9.516546 TGTTGTGAAGATAAGTAGAGAGAGTAA 57.483 33.333 0.00 0.00 0.00 2.24
503 504 9.777575 GTTGTGAAGATAAGTAGAGAGAGTAAC 57.222 37.037 0.00 0.00 0.00 2.50
504 505 8.508883 TGTGAAGATAAGTAGAGAGAGTAACC 57.491 38.462 0.00 0.00 0.00 2.85
505 506 7.280428 TGTGAAGATAAGTAGAGAGAGTAACCG 59.720 40.741 0.00 0.00 0.00 4.44
506 507 6.766944 TGAAGATAAGTAGAGAGAGTAACCGG 59.233 42.308 0.00 0.00 0.00 5.28
507 508 5.623169 AGATAAGTAGAGAGAGTAACCGGG 58.377 45.833 6.32 0.00 0.00 5.73
508 509 3.735720 AAGTAGAGAGAGTAACCGGGT 57.264 47.619 6.32 0.00 0.00 5.28
509 510 4.851639 AAGTAGAGAGAGTAACCGGGTA 57.148 45.455 6.32 0.00 0.00 3.69
510 511 4.420522 AGTAGAGAGAGTAACCGGGTAG 57.579 50.000 6.32 0.00 0.00 3.18
511 512 2.055684 AGAGAGAGTAACCGGGTAGC 57.944 55.000 6.32 0.00 0.00 3.58
512 513 1.031235 GAGAGAGTAACCGGGTAGCC 58.969 60.000 6.32 0.00 0.00 3.93
513 514 0.396835 AGAGAGTAACCGGGTAGCCC 60.397 60.000 6.32 0.00 41.09 5.19
514 515 0.685458 GAGAGTAACCGGGTAGCCCA 60.685 60.000 6.32 0.00 45.83 5.36
515 516 0.031414 AGAGTAACCGGGTAGCCCAT 60.031 55.000 6.32 0.00 45.83 4.00
516 517 0.106149 GAGTAACCGGGTAGCCCATG 59.894 60.000 6.32 0.00 45.83 3.66
517 518 0.325860 AGTAACCGGGTAGCCCATGA 60.326 55.000 6.32 0.00 45.83 3.07
518 519 0.106149 GTAACCGGGTAGCCCATGAG 59.894 60.000 6.32 0.00 45.83 2.90
519 520 1.692173 TAACCGGGTAGCCCATGAGC 61.692 60.000 6.32 0.00 45.83 4.26
520 521 3.164269 CCGGGTAGCCCATGAGCT 61.164 66.667 7.01 7.01 45.83 4.09
521 522 1.837051 CCGGGTAGCCCATGAGCTA 60.837 63.158 4.60 4.60 45.83 3.32
522 523 1.668294 CGGGTAGCCCATGAGCTAG 59.332 63.158 9.48 0.00 45.74 3.42
525 526 3.603144 GTAGCCCATGAGCTAGCTG 57.397 57.895 24.99 8.91 45.74 4.24
526 527 0.602372 GTAGCCCATGAGCTAGCTGC 60.602 60.000 24.99 18.80 45.74 5.25
527 528 1.050421 TAGCCCATGAGCTAGCTGCA 61.050 55.000 24.99 19.42 42.70 4.41
528 529 2.185494 GCCCATGAGCTAGCTGCAC 61.185 63.158 24.99 8.63 45.94 4.57
529 530 1.222661 CCCATGAGCTAGCTGCACA 59.777 57.895 24.99 14.84 45.58 4.57
533 534 3.465990 TGAGCTAGCTGCACATTCC 57.534 52.632 24.99 5.32 45.94 3.01
534 535 0.614812 TGAGCTAGCTGCACATTCCA 59.385 50.000 24.99 8.28 45.94 3.53
535 536 1.297664 GAGCTAGCTGCACATTCCAG 58.702 55.000 24.99 0.00 45.94 3.86
536 537 0.107312 AGCTAGCTGCACATTCCAGG 60.107 55.000 18.57 0.00 45.94 4.45
537 538 1.099879 GCTAGCTGCACATTCCAGGG 61.100 60.000 7.70 0.00 42.31 4.45
538 539 0.254178 CTAGCTGCACATTCCAGGGT 59.746 55.000 1.02 0.00 0.00 4.34
539 540 0.698238 TAGCTGCACATTCCAGGGTT 59.302 50.000 1.02 0.00 0.00 4.11
540 541 0.610232 AGCTGCACATTCCAGGGTTC 60.610 55.000 1.02 0.00 0.00 3.62
541 542 0.895100 GCTGCACATTCCAGGGTTCA 60.895 55.000 0.00 0.00 0.00 3.18
542 543 1.843368 CTGCACATTCCAGGGTTCAT 58.157 50.000 0.00 0.00 0.00 2.57
543 544 1.475280 CTGCACATTCCAGGGTTCATG 59.525 52.381 0.00 0.00 0.00 3.07
544 545 0.819582 GCACATTCCAGGGTTCATGG 59.180 55.000 0.00 0.00 39.33 3.66
545 546 1.892329 GCACATTCCAGGGTTCATGGT 60.892 52.381 0.00 0.00 39.01 3.55
546 547 1.820519 CACATTCCAGGGTTCATGGTG 59.179 52.381 0.00 0.00 39.01 4.17
547 548 1.710244 ACATTCCAGGGTTCATGGTGA 59.290 47.619 0.00 0.00 39.01 4.02
548 549 2.312741 ACATTCCAGGGTTCATGGTGAT 59.687 45.455 0.00 0.00 39.01 3.06
549 550 3.245730 ACATTCCAGGGTTCATGGTGATT 60.246 43.478 0.00 0.00 39.01 2.57
550 551 3.541242 TTCCAGGGTTCATGGTGATTT 57.459 42.857 0.00 0.00 39.01 2.17
551 552 3.541242 TCCAGGGTTCATGGTGATTTT 57.459 42.857 0.00 0.00 39.01 1.82
552 553 3.855668 TCCAGGGTTCATGGTGATTTTT 58.144 40.909 0.00 0.00 39.01 1.94
577 578 3.972227 GCAAGTGTGCCGTCTCAT 58.028 55.556 0.00 0.00 45.68 2.90
578 579 3.137484 GCAAGTGTGCCGTCTCATA 57.863 52.632 0.00 0.00 45.68 2.15
579 580 1.656652 GCAAGTGTGCCGTCTCATAT 58.343 50.000 0.00 0.00 45.68 1.78
580 581 1.594862 GCAAGTGTGCCGTCTCATATC 59.405 52.381 0.00 0.00 45.68 1.63
581 582 2.892374 CAAGTGTGCCGTCTCATATCA 58.108 47.619 0.00 0.00 0.00 2.15
582 583 3.461061 CAAGTGTGCCGTCTCATATCAT 58.539 45.455 0.00 0.00 0.00 2.45
583 584 4.620982 CAAGTGTGCCGTCTCATATCATA 58.379 43.478 0.00 0.00 0.00 2.15
584 585 4.244425 AGTGTGCCGTCTCATATCATAC 57.756 45.455 0.00 0.00 0.00 2.39
585 586 3.891977 AGTGTGCCGTCTCATATCATACT 59.108 43.478 0.00 0.00 0.00 2.12
586 587 4.022762 AGTGTGCCGTCTCATATCATACTC 60.023 45.833 0.00 0.00 0.00 2.59
587 588 3.888930 TGTGCCGTCTCATATCATACTCA 59.111 43.478 0.00 0.00 0.00 3.41
588 589 4.524328 TGTGCCGTCTCATATCATACTCAT 59.476 41.667 0.00 0.00 0.00 2.90
589 590 4.861462 GTGCCGTCTCATATCATACTCATG 59.139 45.833 0.00 0.00 0.00 3.07
590 591 4.524328 TGCCGTCTCATATCATACTCATGT 59.476 41.667 0.00 0.00 33.57 3.21
591 592 4.861462 GCCGTCTCATATCATACTCATGTG 59.139 45.833 0.00 0.00 33.57 3.21
592 593 5.565637 GCCGTCTCATATCATACTCATGTGT 60.566 44.000 5.63 5.63 33.57 3.72
593 594 5.860716 CCGTCTCATATCATACTCATGTGTG 59.139 44.000 10.62 0.00 36.76 3.82
594 595 6.442112 CGTCTCATATCATACTCATGTGTGT 58.558 40.000 10.62 0.76 36.78 3.72
595 596 6.361748 CGTCTCATATCATACTCATGTGTGTG 59.638 42.308 15.96 15.96 36.78 3.82
596 597 6.145209 GTCTCATATCATACTCATGTGTGTGC 59.855 42.308 16.95 0.89 36.78 4.57
597 598 5.916318 TCATATCATACTCATGTGTGTGCA 58.084 37.500 16.95 9.50 36.78 4.57
598 599 6.527423 TCATATCATACTCATGTGTGTGCAT 58.473 36.000 16.95 13.68 36.78 3.96
599 600 6.425721 TCATATCATACTCATGTGTGTGCATG 59.574 38.462 16.95 19.02 45.48 4.06
608 609 3.913548 TGTGTGTGCATGATTGTAACC 57.086 42.857 0.00 0.00 0.00 2.85
609 610 3.485394 TGTGTGTGCATGATTGTAACCT 58.515 40.909 0.00 0.00 0.00 3.50
610 611 3.888323 TGTGTGTGCATGATTGTAACCTT 59.112 39.130 0.00 0.00 0.00 3.50
611 612 4.229096 GTGTGTGCATGATTGTAACCTTG 58.771 43.478 0.00 0.00 0.00 3.61
612 613 4.023279 GTGTGTGCATGATTGTAACCTTGA 60.023 41.667 0.00 0.00 0.00 3.02
613 614 4.766373 TGTGTGCATGATTGTAACCTTGAT 59.234 37.500 0.00 0.00 0.00 2.57
614 615 5.942826 TGTGTGCATGATTGTAACCTTGATA 59.057 36.000 0.00 0.00 0.00 2.15
615 616 6.602803 TGTGTGCATGATTGTAACCTTGATAT 59.397 34.615 0.00 0.00 0.00 1.63
616 617 7.122501 TGTGTGCATGATTGTAACCTTGATATT 59.877 33.333 0.00 0.00 0.00 1.28
617 618 7.975616 GTGTGCATGATTGTAACCTTGATATTT 59.024 33.333 0.00 0.00 0.00 1.40
618 619 8.190122 TGTGCATGATTGTAACCTTGATATTTC 58.810 33.333 0.00 0.00 0.00 2.17
619 620 8.408601 GTGCATGATTGTAACCTTGATATTTCT 58.591 33.333 0.00 0.00 0.00 2.52
620 621 8.407832 TGCATGATTGTAACCTTGATATTTCTG 58.592 33.333 0.00 0.00 0.00 3.02
621 622 8.408601 GCATGATTGTAACCTTGATATTTCTGT 58.591 33.333 0.00 0.00 0.00 3.41
652 653 3.006967 AGCTCTCTTCTACGCCTCAAAAA 59.993 43.478 0.00 0.00 0.00 1.94
653 654 3.935828 GCTCTCTTCTACGCCTCAAAAAT 59.064 43.478 0.00 0.00 0.00 1.82
656 657 6.092259 GCTCTCTTCTACGCCTCAAAAATAAA 59.908 38.462 0.00 0.00 0.00 1.40
657 658 7.201652 GCTCTCTTCTACGCCTCAAAAATAAAT 60.202 37.037 0.00 0.00 0.00 1.40
737 738 1.189524 TGGTTGTCTCTACACCCGGG 61.190 60.000 22.25 22.25 40.97 5.73
739 740 1.156803 TTGTCTCTACACCCGGGGT 59.843 57.895 27.92 21.75 34.61 4.95
740 741 0.409092 TTGTCTCTACACCCGGGGTA 59.591 55.000 27.92 21.70 34.61 3.69
741 742 0.033796 TGTCTCTACACCCGGGGTAG 60.034 60.000 29.45 29.45 39.63 3.18
742 743 0.033699 GTCTCTACACCCGGGGTAGT 60.034 60.000 31.62 25.75 39.36 2.73
743 744 1.212935 GTCTCTACACCCGGGGTAGTA 59.787 57.143 31.62 25.55 39.36 1.82
747 759 2.439507 TCTACACCCGGGGTAGTACTAG 59.560 54.545 31.62 19.78 39.36 2.57
961 974 2.879233 TTCACGGGGCACAGTCTCC 61.879 63.158 0.00 0.00 0.00 3.71
962 975 4.742201 CACGGGGCACAGTCTCCG 62.742 72.222 9.13 9.13 46.95 4.63
1068 1081 2.417719 GAGACTGGTAGTTGGCTGTTG 58.582 52.381 0.00 0.00 0.00 3.33
1335 1380 0.247736 GTCGTTCAGATGTGGCTCCT 59.752 55.000 0.00 0.00 0.00 3.69
1366 1411 2.587080 GTGATCCCACCTACCACGA 58.413 57.895 0.00 0.00 37.33 4.35
1486 1531 3.838271 CAGCCTCGCCGCTAGGAA 61.838 66.667 15.01 0.00 41.02 3.36
1551 1596 0.620556 GCCCCTCATCCAACTTCTCA 59.379 55.000 0.00 0.00 0.00 3.27
1557 1602 5.398353 CCCCTCATCCAACTTCTCACATTAT 60.398 44.000 0.00 0.00 0.00 1.28
1558 1603 6.125029 CCCTCATCCAACTTCTCACATTATT 58.875 40.000 0.00 0.00 0.00 1.40
1805 2151 3.959535 CCATTTATGTGGTGCCTTTGT 57.040 42.857 0.00 0.00 34.46 2.83
1897 2243 3.059120 GCCCTTCTGTTTTCTGTTCGTAC 60.059 47.826 0.00 0.00 0.00 3.67
1953 2308 4.928615 CAGTATGGAGCTGCTTTATCTAGC 59.071 45.833 6.82 0.00 41.59 3.42
1955 2310 3.185246 TGGAGCTGCTTTATCTAGCAC 57.815 47.619 6.82 0.00 45.72 4.40
1956 2311 2.768527 TGGAGCTGCTTTATCTAGCACT 59.231 45.455 6.82 0.00 45.72 4.40
1957 2312 3.181471 TGGAGCTGCTTTATCTAGCACTC 60.181 47.826 6.82 14.31 45.72 3.51
2149 2507 3.439895 GAGTTCATACTCCCTCCGTTC 57.560 52.381 0.00 0.00 44.15 3.95
2150 2508 2.101082 GAGTTCATACTCCCTCCGTTCC 59.899 54.545 0.00 0.00 44.15 3.62
2151 2509 1.829222 GTTCATACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 0.00 3.53
2152 2510 2.235402 GTTCATACTCCCTCCGTTCCAA 59.765 50.000 0.00 0.00 0.00 3.53
2153 2511 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
2154 2512 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2155 2513 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2156 2514 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
2157 2515 5.368523 TCATACTCCCTCCGTTCCAAAATAT 59.631 40.000 0.00 0.00 0.00 1.28
2158 2516 6.555738 TCATACTCCCTCCGTTCCAAAATATA 59.444 38.462 0.00 0.00 0.00 0.86
2159 2517 5.906772 ACTCCCTCCGTTCCAAAATATAT 57.093 39.130 0.00 0.00 0.00 0.86
2160 2518 8.537016 CATACTCCCTCCGTTCCAAAATATATA 58.463 37.037 0.00 0.00 0.00 0.86
2161 2519 7.569599 ACTCCCTCCGTTCCAAAATATATAT 57.430 36.000 0.00 0.00 0.00 0.86
2162 2520 8.674925 ACTCCCTCCGTTCCAAAATATATATA 57.325 34.615 0.00 0.00 0.00 0.86
2163 2521 8.759782 ACTCCCTCCGTTCCAAAATATATATAG 58.240 37.037 0.00 0.00 0.00 1.31
2164 2522 8.674925 TCCCTCCGTTCCAAAATATATATAGT 57.325 34.615 0.00 0.00 0.00 2.12
2165 2523 9.772605 TCCCTCCGTTCCAAAATATATATAGTA 57.227 33.333 0.00 0.00 0.00 1.82
2166 2524 9.813446 CCCTCCGTTCCAAAATATATATAGTAC 57.187 37.037 0.00 0.00 0.00 2.73
2209 2567 9.309516 TGACTCAACTTTGTACTAACTTTAGTG 57.690 33.333 11.24 0.00 43.44 2.74
2210 2568 9.525409 GACTCAACTTTGTACTAACTTTAGTGA 57.475 33.333 11.24 0.00 43.44 3.41
2211 2569 9.880157 ACTCAACTTTGTACTAACTTTAGTGAA 57.120 29.630 11.24 2.61 43.44 3.18
2227 2585 9.880157 ACTTTAGTGAAGTTAGTACAAAGTTGA 57.120 29.630 0.00 0.00 46.34 3.18
2229 2587 9.880157 TTTAGTGAAGTTAGTACAAAGTTGAGT 57.120 29.630 0.00 0.00 0.00 3.41
2230 2588 9.525409 TTAGTGAAGTTAGTACAAAGTTGAGTC 57.475 33.333 0.00 0.00 0.00 3.36
2231 2589 7.553334 AGTGAAGTTAGTACAAAGTTGAGTCA 58.447 34.615 0.00 0.00 0.00 3.41
2232 2590 8.204836 AGTGAAGTTAGTACAAAGTTGAGTCAT 58.795 33.333 0.00 0.00 0.00 3.06
2233 2591 8.488764 GTGAAGTTAGTACAAAGTTGAGTCATC 58.511 37.037 0.00 0.00 0.00 2.92
2234 2592 8.421784 TGAAGTTAGTACAAAGTTGAGTCATCT 58.578 33.333 0.00 0.00 0.00 2.90
2235 2593 9.909644 GAAGTTAGTACAAAGTTGAGTCATCTA 57.090 33.333 4.14 0.00 0.00 1.98
2248 2606 9.868277 AGTTGAGTCATCTATTTTAGAACAGAG 57.132 33.333 1.70 0.00 38.50 3.35
2249 2607 9.092876 GTTGAGTCATCTATTTTAGAACAGAGG 57.907 37.037 0.00 0.00 38.50 3.69
2250 2608 7.786030 TGAGTCATCTATTTTAGAACAGAGGG 58.214 38.462 0.00 0.00 38.50 4.30
2251 2609 7.619698 TGAGTCATCTATTTTAGAACAGAGGGA 59.380 37.037 0.00 0.00 38.50 4.20
2252 2610 8.017418 AGTCATCTATTTTAGAACAGAGGGAG 57.983 38.462 0.00 0.00 38.50 4.30
2272 2630 6.272558 AGGGAGTACTTTTGAAGGAACATACT 59.727 38.462 0.00 0.00 0.00 2.12
2509 2882 9.106070 ACCTATAACTTAAAGTATTTTGGAGCG 57.894 33.333 0.00 0.00 40.09 5.03
2534 2910 7.533222 CGAAGCAGTATTGAAAATCTGATATGC 59.467 37.037 0.00 0.00 0.00 3.14
2604 2980 3.267483 TGCTTTGGTTATACCTTCGCTC 58.733 45.455 0.00 0.00 39.58 5.03
2606 2982 3.877508 GCTTTGGTTATACCTTCGCTCAT 59.122 43.478 0.00 0.00 39.58 2.90
2660 3036 9.003658 GTATGGAAATAGATACTTTGATGTGGG 57.996 37.037 0.00 0.00 0.00 4.61
2699 3075 9.880157 ATATTATTTTGCAGTTCTTTGCTTGAT 57.120 25.926 0.00 0.00 44.38 2.57
2752 3253 8.873215 AAATATTACGAGTTAGACAGTGATGG 57.127 34.615 0.00 0.00 0.00 3.51
2901 3402 4.342378 TGCTGTCTTTGTCTACTCTCTTGT 59.658 41.667 0.00 0.00 0.00 3.16
2905 3406 7.575909 GCTGTCTTTGTCTACTCTCTTGTATCA 60.576 40.741 0.00 0.00 0.00 2.15
2967 3468 5.497474 AGTGTGTAGGAAAACATGGATACC 58.503 41.667 0.00 0.00 0.00 2.73
2970 3471 4.881850 GTGTAGGAAAACATGGATACCTGG 59.118 45.833 11.96 0.00 36.39 4.45
2983 3484 5.077564 TGGATACCTGGCTAGTAGTACATG 58.922 45.833 2.52 0.00 0.00 3.21
3039 3540 5.875910 GGCATGGAATTGTTCATTCATTTGA 59.124 36.000 0.00 0.00 43.04 2.69
3316 3885 5.690865 AGAGAGGACGTATCAGAGAAATCT 58.309 41.667 0.00 0.00 0.00 2.40
3331 3900 1.826385 AATCTGAGAAACGCCAAGGG 58.174 50.000 0.00 0.00 0.00 3.95
3388 3957 7.807977 AGATGAATGTGTAGTGTTCTGTTTT 57.192 32.000 0.00 0.00 0.00 2.43
3423 3992 1.003851 GCACGCGTGTATGGTTATGT 58.996 50.000 36.80 0.00 0.00 2.29
3424 3993 2.195096 GCACGCGTGTATGGTTATGTA 58.805 47.619 36.80 0.00 0.00 2.29
3425 3994 2.798283 GCACGCGTGTATGGTTATGTAT 59.202 45.455 36.80 0.00 0.00 2.29
3426 3995 3.362596 GCACGCGTGTATGGTTATGTATG 60.363 47.826 36.80 9.40 0.00 2.39
3468 4037 3.255364 CTGCTGCTGTGCTGTGCTG 62.255 63.158 0.00 0.00 0.00 4.41
3469 4038 3.285215 GCTGCTGTGCTGTGCTGT 61.285 61.111 0.00 0.00 0.00 4.40
3470 4039 2.637589 CTGCTGTGCTGTGCTGTG 59.362 61.111 0.00 0.00 0.00 3.66
3471 4040 3.538028 CTGCTGTGCTGTGCTGTGC 62.538 63.158 0.00 0.00 0.00 4.57
3473 4042 2.637589 CTGTGCTGTGCTGTGCTG 59.362 61.111 0.00 0.00 0.00 4.41
3474 4043 2.124612 TGTGCTGTGCTGTGCTGT 60.125 55.556 0.00 0.00 0.00 4.40
3475 4044 2.330393 GTGCTGTGCTGTGCTGTG 59.670 61.111 0.00 0.00 0.00 3.66
3476 4045 2.124612 TGCTGTGCTGTGCTGTGT 60.125 55.556 0.00 0.00 0.00 3.72
3477 4046 1.750018 TGCTGTGCTGTGCTGTGTT 60.750 52.632 0.00 0.00 0.00 3.32
3478 4047 0.463474 TGCTGTGCTGTGCTGTGTTA 60.463 50.000 0.00 0.00 0.00 2.41
3479 4048 0.236711 GCTGTGCTGTGCTGTGTTAG 59.763 55.000 0.00 0.00 0.00 2.34
3480 4049 1.586422 CTGTGCTGTGCTGTGTTAGT 58.414 50.000 0.00 0.00 0.00 2.24
3481 4050 2.754472 CTGTGCTGTGCTGTGTTAGTA 58.246 47.619 0.00 0.00 0.00 1.82
3482 4051 3.329386 CTGTGCTGTGCTGTGTTAGTAT 58.671 45.455 0.00 0.00 0.00 2.12
3483 4052 3.066380 TGTGCTGTGCTGTGTTAGTATG 58.934 45.455 0.00 0.00 0.00 2.39
3484 4053 3.067106 GTGCTGTGCTGTGTTAGTATGT 58.933 45.455 0.00 0.00 0.00 2.29
3485 4054 4.242475 GTGCTGTGCTGTGTTAGTATGTA 58.758 43.478 0.00 0.00 0.00 2.29
3486 4055 4.091509 GTGCTGTGCTGTGTTAGTATGTAC 59.908 45.833 0.00 0.00 0.00 2.90
3487 4056 4.021456 TGCTGTGCTGTGTTAGTATGTACT 60.021 41.667 0.00 0.00 40.24 2.73
3488 4057 4.929808 GCTGTGCTGTGTTAGTATGTACTT 59.070 41.667 0.00 0.00 37.73 2.24
3489 4058 5.163953 GCTGTGCTGTGTTAGTATGTACTTG 60.164 44.000 0.00 0.00 37.73 3.16
3490 4059 4.688879 TGTGCTGTGTTAGTATGTACTTGC 59.311 41.667 0.00 0.00 37.73 4.01
3513 4082 5.970023 GCTGTGTTAGTATGTACTTAGGTCG 59.030 44.000 0.00 0.00 37.73 4.79
3514 4083 6.404074 GCTGTGTTAGTATGTACTTAGGTCGT 60.404 42.308 0.00 0.00 37.73 4.34
3515 4084 7.076842 TGTGTTAGTATGTACTTAGGTCGTC 57.923 40.000 0.00 0.00 37.73 4.20
3600 4177 1.204062 CCATCACGTTCGTGTGTGC 59.796 57.895 21.61 0.00 40.74 4.57
3693 4271 5.886474 TGATGGTGTTATCTCGAGTAGTTCT 59.114 40.000 13.13 0.00 0.00 3.01
3974 4562 1.556564 CGTTCGTAGGATCGCATTGT 58.443 50.000 3.25 0.00 0.00 2.71
4028 4616 2.615869 CTGTAGGCAGCTTCTCAACTC 58.384 52.381 0.00 0.00 35.77 3.01
4190 4793 6.604735 GTGTTGTTCACTGAAGAATGTAGT 57.395 37.500 4.77 0.00 43.13 2.73
4191 4794 7.016361 GTGTTGTTCACTGAAGAATGTAGTT 57.984 36.000 4.77 0.00 43.13 2.24
4192 4795 7.472543 GTGTTGTTCACTGAAGAATGTAGTTT 58.527 34.615 4.77 0.00 43.13 2.66
4193 4796 7.429340 GTGTTGTTCACTGAAGAATGTAGTTTG 59.571 37.037 4.77 0.00 43.13 2.93
4194 4797 7.120579 TGTTGTTCACTGAAGAATGTAGTTTGT 59.879 33.333 4.77 0.00 28.17 2.83
4195 4798 7.015226 TGTTCACTGAAGAATGTAGTTTGTG 57.985 36.000 0.00 0.00 0.00 3.33
4196 4799 6.597672 TGTTCACTGAAGAATGTAGTTTGTGT 59.402 34.615 0.00 0.00 0.00 3.72
4197 4800 6.603237 TCACTGAAGAATGTAGTTTGTGTG 57.397 37.500 0.00 0.00 0.00 3.82
4198 4801 5.007626 TCACTGAAGAATGTAGTTTGTGTGC 59.992 40.000 0.00 0.00 0.00 4.57
4199 4802 4.881273 ACTGAAGAATGTAGTTTGTGTGCA 59.119 37.500 0.00 0.00 0.00 4.57
4200 4803 5.168526 TGAAGAATGTAGTTTGTGTGCAC 57.831 39.130 10.75 10.75 0.00 4.57
4201 4804 4.881273 TGAAGAATGTAGTTTGTGTGCACT 59.119 37.500 19.41 0.00 0.00 4.40
4322 4925 4.022589 AGACCTGAGCAATGACAAATGTTG 60.023 41.667 0.00 0.00 0.00 3.33
4359 4973 2.814805 ACCATTGCAGGTCATAGCTT 57.185 45.000 0.00 0.00 37.28 3.74
4375 4989 7.119846 GGTCATAGCTTACATTGACAAAGAACT 59.880 37.037 0.00 0.00 40.14 3.01
4384 4998 4.527509 TTGACAAAGAACTGCCACAAAA 57.472 36.364 0.00 0.00 0.00 2.44
4389 5003 5.244755 ACAAAGAACTGCCACAAAACAAAT 58.755 33.333 0.00 0.00 0.00 2.32
4588 5211 8.522830 CACTGATGGACAAGTTTATAACCAAAT 58.477 33.333 0.00 0.00 0.00 2.32
4595 5218 8.464404 GGACAAGTTTATAACCAAATAAGTCCC 58.536 37.037 0.00 0.00 33.14 4.46
4637 5260 2.427245 CCCTACCCCTGCTCTGTCG 61.427 68.421 0.00 0.00 0.00 4.35
4683 5306 2.419057 GCCTGTTGCCACTTTGTCT 58.581 52.632 0.00 0.00 0.00 3.41
4685 5308 1.269257 GCCTGTTGCCACTTTGTCTTC 60.269 52.381 0.00 0.00 0.00 2.87
4700 5323 7.442364 CACTTTGTCTTCTGAATTCTGTCCTAA 59.558 37.037 7.05 0.00 0.00 2.69
4723 5346 6.048732 AGTCTTTTGAATGGTTTGTTGGTT 57.951 33.333 0.00 0.00 0.00 3.67
4756 5379 1.270518 TGCTTCTCAACCAGTGCTCTC 60.271 52.381 0.00 0.00 0.00 3.20
4757 5380 1.001860 GCTTCTCAACCAGTGCTCTCT 59.998 52.381 0.00 0.00 0.00 3.10
4770 5393 0.389025 GCTCTCTTCTCAGCTAGGGC 59.611 60.000 0.00 0.00 39.06 5.19
4782 5405 1.960417 GCTAGGGCTTGCTTCTTAGG 58.040 55.000 0.00 0.00 35.22 2.69
4783 5406 1.475930 GCTAGGGCTTGCTTCTTAGGG 60.476 57.143 0.00 0.00 35.22 3.53
4784 5407 0.546598 TAGGGCTTGCTTCTTAGGGC 59.453 55.000 0.00 0.00 0.00 5.19
4785 5408 2.115291 GGGCTTGCTTCTTAGGGCG 61.115 63.158 0.00 0.00 0.00 6.13
4786 5409 1.377333 GGCTTGCTTCTTAGGGCGT 60.377 57.895 0.00 0.00 0.00 5.68
4787 5410 1.648467 GGCTTGCTTCTTAGGGCGTG 61.648 60.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.732849 CCTGGTTGGGGGCTCCTC 61.733 72.222 4.32 0.00 36.20 3.71
13 14 3.406595 GAATGAGCCGACCCCCTGG 62.407 68.421 0.00 0.00 37.80 4.45
24 25 0.753111 GGGGTGGGTGATGAATGAGC 60.753 60.000 0.00 0.00 0.00 4.26
41 42 1.973281 GCATGTGTGTGTGGAGGGG 60.973 63.158 0.00 0.00 0.00 4.79
42 43 1.228215 TGCATGTGTGTGTGGAGGG 60.228 57.895 0.00 0.00 0.00 4.30
43 44 1.239296 CCTGCATGTGTGTGTGGAGG 61.239 60.000 0.00 0.00 45.48 4.30
44 45 1.239296 CCCTGCATGTGTGTGTGGAG 61.239 60.000 0.00 0.00 34.08 3.86
45 46 1.228215 CCCTGCATGTGTGTGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
46 47 1.228215 TCCCTGCATGTGTGTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
47 48 0.250424 TCTCCCTGCATGTGTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
48 49 0.473755 TTCTCCCTGCATGTGTGTGT 59.526 50.000 0.00 0.00 0.00 3.72
49 50 1.162698 CTTCTCCCTGCATGTGTGTG 58.837 55.000 0.00 0.00 0.00 3.82
61 62 0.750249 GCTAGCTCTCCACTTCTCCC 59.250 60.000 7.70 0.00 0.00 4.30
84 85 1.064825 TTTGGGTGGAGGAGGAAGAC 58.935 55.000 0.00 0.00 0.00 3.01
93 94 1.242076 CTGAAGCTGTTTGGGTGGAG 58.758 55.000 0.00 0.00 0.00 3.86
109 110 0.253044 GGCTACAATGGTGCTCCTGA 59.747 55.000 6.34 0.00 34.23 3.86
114 115 0.405585 AAGTGGGCTACAATGGTGCT 59.594 50.000 3.15 0.00 0.00 4.40
124 125 4.655649 ACTATGATGATCACAAGTGGGCTA 59.344 41.667 10.48 0.00 28.38 3.93
130 131 6.071672 CCGGATCTACTATGATGATCACAAGT 60.072 42.308 14.41 14.41 38.55 3.16
134 135 4.158579 TGCCGGATCTACTATGATGATCAC 59.841 45.833 5.05 0.00 38.55 3.06
140 141 3.093057 GTCCTGCCGGATCTACTATGAT 58.907 50.000 5.05 0.00 42.43 2.45
146 147 1.249407 CCTAGTCCTGCCGGATCTAC 58.751 60.000 5.05 0.00 42.43 2.59
156 157 0.252284 AGGTGACACCCCTAGTCCTG 60.252 60.000 21.32 0.00 39.75 3.86
181 182 2.269241 CCAGGTTTCGGGCTCTCC 59.731 66.667 0.00 0.00 0.00 3.71
190 191 2.028385 AGACACACGATACCCAGGTTTC 60.028 50.000 0.00 0.00 0.00 2.78
191 192 1.975680 AGACACACGATACCCAGGTTT 59.024 47.619 0.00 0.00 0.00 3.27
260 261 0.402504 TATCAAACGTGGTTGGGGCT 59.597 50.000 0.00 0.00 0.00 5.19
271 272 3.746492 GCTATGGGTAGGCTTATCAAACG 59.254 47.826 0.00 0.00 0.00 3.60
275 276 4.223700 CAGATGCTATGGGTAGGCTTATCA 59.776 45.833 0.00 0.00 0.00 2.15
283 284 0.681733 ACGGCAGATGCTATGGGTAG 59.318 55.000 4.59 0.00 41.70 3.18
284 285 0.392706 CACGGCAGATGCTATGGGTA 59.607 55.000 4.59 0.00 41.70 3.69
304 305 2.118233 TAGCAATGTCGTGGGGTGCA 62.118 55.000 0.00 0.00 37.68 4.57
305 306 0.748005 ATAGCAATGTCGTGGGGTGC 60.748 55.000 0.00 0.00 35.41 5.01
309 310 3.312421 CAGGTTAATAGCAATGTCGTGGG 59.688 47.826 0.00 0.00 0.00 4.61
318 319 8.200792 ACATTTGTTTTGTCAGGTTAATAGCAA 58.799 29.630 0.00 0.00 0.00 3.91
337 338 8.877864 TGATTATTGGTCCTCTAAACATTTGT 57.122 30.769 0.00 0.00 0.00 2.83
346 347 8.937835 TCAGATTCAATGATTATTGGTCCTCTA 58.062 33.333 10.06 0.00 43.11 2.43
348 349 7.718753 AGTCAGATTCAATGATTATTGGTCCTC 59.281 37.037 10.06 3.25 43.11 3.71
350 351 7.646314 CAGTCAGATTCAATGATTATTGGTCC 58.354 38.462 10.06 0.77 43.11 4.46
354 355 8.070769 CAGAGCAGTCAGATTCAATGATTATTG 58.929 37.037 3.85 3.85 44.03 1.90
361 362 3.064134 CAGCAGAGCAGTCAGATTCAATG 59.936 47.826 0.00 0.00 0.00 2.82
378 379 2.691927 TGATAGTTGTGACTGCAGCAG 58.308 47.619 21.54 21.54 36.60 4.24
380 381 4.394300 AGAATTGATAGTTGTGACTGCAGC 59.606 41.667 15.27 7.45 36.60 5.25
381 382 6.492007 AAGAATTGATAGTTGTGACTGCAG 57.508 37.500 13.48 13.48 36.60 4.41
384 385 5.446473 GCCGAAGAATTGATAGTTGTGACTG 60.446 44.000 0.00 0.00 36.60 3.51
420 421 1.146263 CTTCATAGACGGCCCACCC 59.854 63.158 0.00 0.00 0.00 4.61
421 422 0.759346 ATCTTCATAGACGGCCCACC 59.241 55.000 0.00 0.00 31.99 4.61
422 423 1.871080 CATCTTCATAGACGGCCCAC 58.129 55.000 0.00 0.00 31.99 4.61
423 424 0.106708 GCATCTTCATAGACGGCCCA 59.893 55.000 0.00 0.00 31.99 5.36
424 425 0.394565 AGCATCTTCATAGACGGCCC 59.605 55.000 0.00 0.00 35.63 5.80
425 426 3.321497 CTTAGCATCTTCATAGACGGCC 58.679 50.000 0.00 0.00 35.63 6.13
426 427 2.734079 GCTTAGCATCTTCATAGACGGC 59.266 50.000 0.00 0.00 35.40 5.68
427 428 2.983136 CGCTTAGCATCTTCATAGACGG 59.017 50.000 4.70 0.00 31.99 4.79
428 429 3.890128 TCGCTTAGCATCTTCATAGACG 58.110 45.455 4.70 0.00 31.99 4.18
442 443 4.681483 TGAATTATGTGATCGCTCGCTTAG 59.319 41.667 7.94 0.00 32.91 2.18
443 444 4.616953 TGAATTATGTGATCGCTCGCTTA 58.383 39.130 7.94 0.00 32.91 3.09
444 445 3.457234 TGAATTATGTGATCGCTCGCTT 58.543 40.909 7.94 0.00 32.91 4.68
445 446 3.055591 CTGAATTATGTGATCGCTCGCT 58.944 45.455 7.94 0.00 32.91 4.93
446 447 2.156504 CCTGAATTATGTGATCGCTCGC 59.843 50.000 7.94 0.00 0.00 5.03
447 448 3.384668 ACCTGAATTATGTGATCGCTCG 58.615 45.455 7.94 0.00 0.00 5.03
448 449 6.619446 GCAATACCTGAATTATGTGATCGCTC 60.619 42.308 7.94 0.00 0.00 5.03
449 450 5.180117 GCAATACCTGAATTATGTGATCGCT 59.820 40.000 7.94 0.00 0.00 4.93
450 451 5.385617 GCAATACCTGAATTATGTGATCGC 58.614 41.667 0.00 0.00 0.00 4.58
451 452 5.931532 GGCAATACCTGAATTATGTGATCG 58.068 41.667 0.00 0.00 34.51 3.69
466 467 6.151144 ACTTATCTTCACAACAAGGCAATACC 59.849 38.462 0.00 0.00 39.61 2.73
467 468 7.145932 ACTTATCTTCACAACAAGGCAATAC 57.854 36.000 0.00 0.00 0.00 1.89
468 469 8.318412 TCTACTTATCTTCACAACAAGGCAATA 58.682 33.333 0.00 0.00 0.00 1.90
469 470 7.168219 TCTACTTATCTTCACAACAAGGCAAT 58.832 34.615 0.00 0.00 0.00 3.56
470 471 6.530120 TCTACTTATCTTCACAACAAGGCAA 58.470 36.000 0.00 0.00 0.00 4.52
471 472 6.014584 TCTCTACTTATCTTCACAACAAGGCA 60.015 38.462 0.00 0.00 0.00 4.75
472 473 6.398918 TCTCTACTTATCTTCACAACAAGGC 58.601 40.000 0.00 0.00 0.00 4.35
473 474 7.831753 TCTCTCTACTTATCTTCACAACAAGG 58.168 38.462 0.00 0.00 0.00 3.61
474 475 8.519526 ACTCTCTCTACTTATCTTCACAACAAG 58.480 37.037 0.00 0.00 0.00 3.16
475 476 8.410673 ACTCTCTCTACTTATCTTCACAACAA 57.589 34.615 0.00 0.00 0.00 2.83
476 477 9.516546 TTACTCTCTCTACTTATCTTCACAACA 57.483 33.333 0.00 0.00 0.00 3.33
477 478 9.777575 GTTACTCTCTCTACTTATCTTCACAAC 57.222 37.037 0.00 0.00 0.00 3.32
478 479 8.958506 GGTTACTCTCTCTACTTATCTTCACAA 58.041 37.037 0.00 0.00 0.00 3.33
479 480 7.280428 CGGTTACTCTCTCTACTTATCTTCACA 59.720 40.741 0.00 0.00 0.00 3.58
480 481 7.254863 CCGGTTACTCTCTCTACTTATCTTCAC 60.255 44.444 0.00 0.00 0.00 3.18
481 482 6.766944 CCGGTTACTCTCTCTACTTATCTTCA 59.233 42.308 0.00 0.00 0.00 3.02
482 483 6.205270 CCCGGTTACTCTCTCTACTTATCTTC 59.795 46.154 0.00 0.00 0.00 2.87
483 484 6.063404 CCCGGTTACTCTCTCTACTTATCTT 58.937 44.000 0.00 0.00 0.00 2.40
484 485 5.132480 ACCCGGTTACTCTCTCTACTTATCT 59.868 44.000 0.00 0.00 0.00 1.98
485 486 5.375773 ACCCGGTTACTCTCTCTACTTATC 58.624 45.833 0.00 0.00 0.00 1.75
486 487 5.385628 ACCCGGTTACTCTCTCTACTTAT 57.614 43.478 0.00 0.00 0.00 1.73
487 488 4.851639 ACCCGGTTACTCTCTCTACTTA 57.148 45.455 0.00 0.00 0.00 2.24
488 489 3.735720 ACCCGGTTACTCTCTCTACTT 57.264 47.619 0.00 0.00 0.00 2.24
489 490 3.433456 GCTACCCGGTTACTCTCTCTACT 60.433 52.174 0.00 0.00 0.00 2.57
490 491 2.877786 GCTACCCGGTTACTCTCTCTAC 59.122 54.545 0.00 0.00 0.00 2.59
491 492 2.158696 GGCTACCCGGTTACTCTCTCTA 60.159 54.545 0.00 0.00 0.00 2.43
492 493 1.409942 GGCTACCCGGTTACTCTCTCT 60.410 57.143 0.00 0.00 0.00 3.10
493 494 1.031235 GGCTACCCGGTTACTCTCTC 58.969 60.000 0.00 0.00 0.00 3.20
494 495 0.396835 GGGCTACCCGGTTACTCTCT 60.397 60.000 0.00 0.00 32.13 3.10
495 496 2.122527 GGGCTACCCGGTTACTCTC 58.877 63.158 0.00 0.00 32.13 3.20
496 497 4.369850 GGGCTACCCGGTTACTCT 57.630 61.111 0.00 0.00 32.13 3.24
505 506 1.124477 AGCTAGCTCATGGGCTACCC 61.124 60.000 23.65 16.40 45.71 3.69
506 507 0.034616 CAGCTAGCTCATGGGCTACC 59.965 60.000 23.65 17.19 42.97 3.18
507 508 0.602372 GCAGCTAGCTCATGGGCTAC 60.602 60.000 23.65 18.74 42.97 3.58
508 509 1.050421 TGCAGCTAGCTCATGGGCTA 61.050 55.000 25.54 25.54 45.94 3.93
509 510 2.372890 TGCAGCTAGCTCATGGGCT 61.373 57.895 26.16 26.16 45.94 5.19
510 511 2.185494 GTGCAGCTAGCTCATGGGC 61.185 63.158 16.15 10.42 45.94 5.36
511 512 1.222661 TGTGCAGCTAGCTCATGGG 59.777 57.895 16.15 4.23 45.94 4.00
512 513 4.948257 TGTGCAGCTAGCTCATGG 57.052 55.556 16.15 4.66 45.94 3.66
516 517 1.297664 CTGGAATGTGCAGCTAGCTC 58.702 55.000 16.15 10.60 45.94 4.09
517 518 0.107312 CCTGGAATGTGCAGCTAGCT 60.107 55.000 12.68 12.68 45.94 3.32
518 519 1.099879 CCCTGGAATGTGCAGCTAGC 61.100 60.000 6.62 6.62 45.96 3.42
519 520 0.254178 ACCCTGGAATGTGCAGCTAG 59.746 55.000 0.00 0.00 34.22 3.42
520 521 0.698238 AACCCTGGAATGTGCAGCTA 59.302 50.000 0.00 0.00 34.22 3.32
521 522 0.610232 GAACCCTGGAATGTGCAGCT 60.610 55.000 0.00 0.00 34.22 4.24
522 523 0.895100 TGAACCCTGGAATGTGCAGC 60.895 55.000 0.00 0.00 34.22 5.25
523 524 1.475280 CATGAACCCTGGAATGTGCAG 59.525 52.381 0.00 0.00 35.43 4.41
524 525 1.548081 CATGAACCCTGGAATGTGCA 58.452 50.000 0.00 0.00 0.00 4.57
525 526 0.819582 CCATGAACCCTGGAATGTGC 59.180 55.000 0.00 0.00 35.70 4.57
526 527 1.820519 CACCATGAACCCTGGAATGTG 59.179 52.381 0.00 0.00 37.22 3.21
527 528 1.710244 TCACCATGAACCCTGGAATGT 59.290 47.619 0.00 0.00 37.22 2.71
528 529 2.512692 TCACCATGAACCCTGGAATG 57.487 50.000 0.00 0.00 37.22 2.67
529 530 3.763557 AATCACCATGAACCCTGGAAT 57.236 42.857 0.00 0.00 37.22 3.01
530 531 3.541242 AAATCACCATGAACCCTGGAA 57.459 42.857 0.00 0.00 37.22 3.53
531 532 3.541242 AAAATCACCATGAACCCTGGA 57.459 42.857 0.00 0.00 37.22 3.86
561 562 2.892374 TGATATGAGACGGCACACTTG 58.108 47.619 0.00 0.00 0.00 3.16
562 563 3.827008 ATGATATGAGACGGCACACTT 57.173 42.857 0.00 0.00 0.00 3.16
563 564 3.891977 AGTATGATATGAGACGGCACACT 59.108 43.478 0.00 0.00 0.00 3.55
564 565 4.230657 GAGTATGATATGAGACGGCACAC 58.769 47.826 0.00 0.00 0.00 3.82
565 566 3.888930 TGAGTATGATATGAGACGGCACA 59.111 43.478 0.00 0.00 0.00 4.57
566 567 4.505313 TGAGTATGATATGAGACGGCAC 57.495 45.455 0.00 0.00 0.00 5.01
567 568 4.524328 ACATGAGTATGATATGAGACGGCA 59.476 41.667 0.00 0.00 37.73 5.69
568 569 4.861462 CACATGAGTATGATATGAGACGGC 59.139 45.833 0.00 0.00 37.73 5.68
569 570 5.860716 CACACATGAGTATGATATGAGACGG 59.139 44.000 0.00 0.00 37.73 4.79
570 571 6.361748 CACACACATGAGTATGATATGAGACG 59.638 42.308 0.00 0.00 37.73 4.18
571 572 6.145209 GCACACACATGAGTATGATATGAGAC 59.855 42.308 5.69 0.00 37.73 3.36
572 573 6.183360 TGCACACACATGAGTATGATATGAGA 60.183 38.462 5.69 0.00 37.73 3.27
573 574 5.987347 TGCACACACATGAGTATGATATGAG 59.013 40.000 5.69 0.00 37.73 2.90
574 575 5.916318 TGCACACACATGAGTATGATATGA 58.084 37.500 5.69 0.00 37.73 2.15
575 576 6.796705 ATGCACACACATGAGTATGATATG 57.203 37.500 5.69 0.00 37.73 1.78
587 588 4.081406 AGGTTACAATCATGCACACACAT 58.919 39.130 0.00 0.00 0.00 3.21
588 589 3.485394 AGGTTACAATCATGCACACACA 58.515 40.909 0.00 0.00 0.00 3.72
589 590 4.023279 TCAAGGTTACAATCATGCACACAC 60.023 41.667 0.00 0.00 0.00 3.82
590 591 4.140536 TCAAGGTTACAATCATGCACACA 58.859 39.130 0.00 0.00 0.00 3.72
591 592 4.764679 TCAAGGTTACAATCATGCACAC 57.235 40.909 0.00 0.00 0.00 3.82
592 593 7.643569 AATATCAAGGTTACAATCATGCACA 57.356 32.000 0.00 0.00 0.00 4.57
593 594 8.408601 AGAAATATCAAGGTTACAATCATGCAC 58.591 33.333 0.00 0.00 0.00 4.57
594 595 8.407832 CAGAAATATCAAGGTTACAATCATGCA 58.592 33.333 0.00 0.00 0.00 3.96
595 596 8.408601 ACAGAAATATCAAGGTTACAATCATGC 58.591 33.333 0.00 0.00 0.00 4.06
618 619 8.907685 GCGTAGAAGAGAGCTTATATTAAACAG 58.092 37.037 0.00 0.00 33.61 3.16
619 620 7.866393 GGCGTAGAAGAGAGCTTATATTAAACA 59.134 37.037 0.00 0.00 33.61 2.83
620 621 8.083462 AGGCGTAGAAGAGAGCTTATATTAAAC 58.917 37.037 0.00 0.00 33.61 2.01
621 622 8.179509 AGGCGTAGAAGAGAGCTTATATTAAA 57.820 34.615 0.00 0.00 33.61 1.52
622 623 7.447545 TGAGGCGTAGAAGAGAGCTTATATTAA 59.552 37.037 0.00 0.00 33.61 1.40
623 624 6.940867 TGAGGCGTAGAAGAGAGCTTATATTA 59.059 38.462 0.00 0.00 33.61 0.98
624 625 5.770663 TGAGGCGTAGAAGAGAGCTTATATT 59.229 40.000 0.00 0.00 33.61 1.28
625 626 5.317808 TGAGGCGTAGAAGAGAGCTTATAT 58.682 41.667 0.00 0.00 33.61 0.86
626 627 4.715713 TGAGGCGTAGAAGAGAGCTTATA 58.284 43.478 0.00 0.00 33.61 0.98
627 628 3.556999 TGAGGCGTAGAAGAGAGCTTAT 58.443 45.455 0.00 0.00 33.61 1.73
628 629 3.000684 TGAGGCGTAGAAGAGAGCTTA 57.999 47.619 0.00 0.00 33.61 3.09
629 630 1.840737 TGAGGCGTAGAAGAGAGCTT 58.159 50.000 0.00 0.00 36.96 3.74
630 631 1.840737 TTGAGGCGTAGAAGAGAGCT 58.159 50.000 0.00 0.00 0.00 4.09
631 632 2.656560 TTTGAGGCGTAGAAGAGAGC 57.343 50.000 0.00 0.00 0.00 4.09
632 633 7.596749 TTTATTTTTGAGGCGTAGAAGAGAG 57.403 36.000 0.00 0.00 0.00 3.20
633 634 9.661563 TTATTTATTTTTGAGGCGTAGAAGAGA 57.338 29.630 0.00 0.00 0.00 3.10
653 654 9.146984 CGAGGCGACCTATGATTTATTTATTTA 57.853 33.333 0.00 0.00 31.76 1.40
656 657 6.698380 ACGAGGCGACCTATGATTTATTTAT 58.302 36.000 0.00 0.00 31.76 1.40
657 658 6.092955 ACGAGGCGACCTATGATTTATTTA 57.907 37.500 0.00 0.00 31.76 1.40
661 662 2.295349 GGACGAGGCGACCTATGATTTA 59.705 50.000 0.00 0.00 38.50 1.40
662 663 1.068741 GGACGAGGCGACCTATGATTT 59.931 52.381 0.00 0.00 38.50 2.17
663 664 0.674534 GGACGAGGCGACCTATGATT 59.325 55.000 0.00 0.00 38.50 2.57
664 665 0.467474 TGGACGAGGCGACCTATGAT 60.467 55.000 9.43 0.00 41.68 2.45
665 666 0.467474 ATGGACGAGGCGACCTATGA 60.467 55.000 9.43 0.00 41.68 2.15
666 667 0.389391 AATGGACGAGGCGACCTATG 59.611 55.000 9.43 0.00 41.68 2.23
667 668 1.612463 GTAATGGACGAGGCGACCTAT 59.388 52.381 9.43 1.95 41.68 2.57
710 711 5.855045 GGTGTAGAGACAACCATATTAGGG 58.145 45.833 0.00 0.00 37.30 3.53
737 738 2.222908 GCGTCACGTGACTAGTACTACC 60.223 54.545 37.63 14.81 42.66 3.18
739 740 2.002586 GGCGTCACGTGACTAGTACTA 58.997 52.381 37.63 5.41 42.66 1.82
740 741 0.801251 GGCGTCACGTGACTAGTACT 59.199 55.000 37.63 0.00 42.66 2.73
741 742 0.179179 GGGCGTCACGTGACTAGTAC 60.179 60.000 37.63 24.46 42.66 2.73
742 743 1.638388 CGGGCGTCACGTGACTAGTA 61.638 60.000 37.63 7.71 42.66 1.82
743 744 2.960170 GGGCGTCACGTGACTAGT 59.040 61.111 37.63 0.00 42.66 2.57
747 759 3.346631 ATACCGGGCGTCACGTGAC 62.347 63.158 33.76 33.76 41.47 3.67
903 916 2.757099 GAATGCAGGTGGGCCCAG 60.757 66.667 29.55 16.01 34.66 4.45
961 974 2.751837 GCTTGGCCTTTCCCTCCG 60.752 66.667 3.32 0.00 0.00 4.63
962 975 2.363018 GGCTTGGCCTTTCCCTCC 60.363 66.667 3.32 0.00 46.69 4.30
1068 1081 0.610687 GAGATGGATGGACCGATCCC 59.389 60.000 16.05 3.29 45.59 3.85
1223 1264 0.655733 ATGTCGATTTTTAGCGGGCG 59.344 50.000 0.00 0.00 0.00 6.13
1557 1602 6.661777 ACTGCCCCTACCGTAAAAATAATAA 58.338 36.000 0.00 0.00 0.00 1.40
1558 1603 6.251255 ACTGCCCCTACCGTAAAAATAATA 57.749 37.500 0.00 0.00 0.00 0.98
1562 1608 3.349927 GAACTGCCCCTACCGTAAAAAT 58.650 45.455 0.00 0.00 0.00 1.82
1633 1679 2.159085 AGCCACATAGACGAAAGCTACC 60.159 50.000 0.00 0.00 0.00 3.18
1638 1684 4.378459 GGACAAAAGCCACATAGACGAAAG 60.378 45.833 0.00 0.00 0.00 2.62
1953 2308 1.069765 ACGCACACAAGGAGGAGTG 59.930 57.895 0.00 0.00 41.40 3.51
1955 2310 0.249868 TTCACGCACACAAGGAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
1956 2311 0.249868 CTTCACGCACACAAGGAGGA 60.250 55.000 0.00 0.00 0.00 3.71
1957 2312 0.532862 ACTTCACGCACACAAGGAGG 60.533 55.000 0.00 0.00 0.00 4.30
2140 2498 9.813446 GTACTATATATATTTTGGAACGGAGGG 57.187 37.037 0.00 0.00 0.00 4.30
2183 2541 9.309516 CACTAAAGTTAGTACAAAGTTGAGTCA 57.690 33.333 3.46 0.00 41.82 3.41
2184 2542 9.525409 TCACTAAAGTTAGTACAAAGTTGAGTC 57.475 33.333 3.46 0.00 41.82 3.36
2185 2543 9.880157 TTCACTAAAGTTAGTACAAAGTTGAGT 57.120 29.630 3.46 0.00 41.82 3.41
2187 2545 9.880157 ACTTCACTAAAGTTAGTACAAAGTTGA 57.120 29.630 14.17 2.07 46.26 3.18
2203 2561 9.880157 ACTCAACTTTGTACTAACTTCACTAAA 57.120 29.630 0.00 0.00 0.00 1.85
2204 2562 9.525409 GACTCAACTTTGTACTAACTTCACTAA 57.475 33.333 0.00 0.00 0.00 2.24
2205 2563 8.689061 TGACTCAACTTTGTACTAACTTCACTA 58.311 33.333 0.00 0.00 0.00 2.74
2206 2564 7.553334 TGACTCAACTTTGTACTAACTTCACT 58.447 34.615 0.00 0.00 0.00 3.41
2207 2565 7.766219 TGACTCAACTTTGTACTAACTTCAC 57.234 36.000 0.00 0.00 0.00 3.18
2208 2566 8.421784 AGATGACTCAACTTTGTACTAACTTCA 58.578 33.333 0.00 0.00 0.00 3.02
2209 2567 8.819643 AGATGACTCAACTTTGTACTAACTTC 57.180 34.615 0.00 0.00 0.00 3.01
2222 2580 9.868277 CTCTGTTCTAAAATAGATGACTCAACT 57.132 33.333 0.00 0.00 32.88 3.16
2223 2581 9.092876 CCTCTGTTCTAAAATAGATGACTCAAC 57.907 37.037 0.00 0.00 32.88 3.18
2224 2582 8.260818 CCCTCTGTTCTAAAATAGATGACTCAA 58.739 37.037 0.00 0.00 32.88 3.02
2225 2583 7.619698 TCCCTCTGTTCTAAAATAGATGACTCA 59.380 37.037 0.00 0.00 32.88 3.41
2226 2584 8.012957 TCCCTCTGTTCTAAAATAGATGACTC 57.987 38.462 0.00 0.00 32.88 3.36
2227 2585 7.621683 ACTCCCTCTGTTCTAAAATAGATGACT 59.378 37.037 0.00 0.00 32.88 3.41
2228 2586 7.787028 ACTCCCTCTGTTCTAAAATAGATGAC 58.213 38.462 0.00 0.00 32.88 3.06
2229 2587 7.979786 ACTCCCTCTGTTCTAAAATAGATGA 57.020 36.000 0.00 0.00 32.88 2.92
2230 2588 8.919145 AGTACTCCCTCTGTTCTAAAATAGATG 58.081 37.037 0.00 0.00 32.88 2.90
2231 2589 9.495382 AAGTACTCCCTCTGTTCTAAAATAGAT 57.505 33.333 0.00 0.00 32.88 1.98
2232 2590 8.896722 AAGTACTCCCTCTGTTCTAAAATAGA 57.103 34.615 0.00 0.00 32.42 1.98
2233 2591 9.945904 AAAAGTACTCCCTCTGTTCTAAAATAG 57.054 33.333 0.00 0.00 0.00 1.73
2234 2592 9.720769 CAAAAGTACTCCCTCTGTTCTAAAATA 57.279 33.333 0.00 0.00 0.00 1.40
2235 2593 8.437575 TCAAAAGTACTCCCTCTGTTCTAAAAT 58.562 33.333 0.00 0.00 0.00 1.82
2236 2594 7.798071 TCAAAAGTACTCCCTCTGTTCTAAAA 58.202 34.615 0.00 0.00 0.00 1.52
2237 2595 7.369551 TCAAAAGTACTCCCTCTGTTCTAAA 57.630 36.000 0.00 0.00 0.00 1.85
2238 2596 6.989155 TCAAAAGTACTCCCTCTGTTCTAA 57.011 37.500 0.00 0.00 0.00 2.10
2239 2597 6.014499 CCTTCAAAAGTACTCCCTCTGTTCTA 60.014 42.308 0.00 0.00 0.00 2.10
2240 2598 5.221742 CCTTCAAAAGTACTCCCTCTGTTCT 60.222 44.000 0.00 0.00 0.00 3.01
2241 2599 4.998033 CCTTCAAAAGTACTCCCTCTGTTC 59.002 45.833 0.00 0.00 0.00 3.18
2242 2600 4.658901 TCCTTCAAAAGTACTCCCTCTGTT 59.341 41.667 0.00 0.00 0.00 3.16
2243 2601 4.232091 TCCTTCAAAAGTACTCCCTCTGT 58.768 43.478 0.00 0.00 0.00 3.41
2244 2602 4.891992 TCCTTCAAAAGTACTCCCTCTG 57.108 45.455 0.00 0.00 0.00 3.35
2245 2603 4.658901 TGTTCCTTCAAAAGTACTCCCTCT 59.341 41.667 0.00 0.00 0.00 3.69
2246 2604 4.969484 TGTTCCTTCAAAAGTACTCCCTC 58.031 43.478 0.00 0.00 0.00 4.30
2247 2605 5.584551 ATGTTCCTTCAAAAGTACTCCCT 57.415 39.130 0.00 0.00 0.00 4.20
2248 2606 6.473758 AGTATGTTCCTTCAAAAGTACTCCC 58.526 40.000 0.00 0.00 0.00 4.30
2249 2607 6.594547 GGAGTATGTTCCTTCAAAAGTACTCC 59.405 42.308 11.20 11.20 45.40 3.85
2250 2608 6.594547 GGGAGTATGTTCCTTCAAAAGTACTC 59.405 42.308 0.00 0.00 37.40 2.59
2251 2609 6.272558 AGGGAGTATGTTCCTTCAAAAGTACT 59.727 38.462 0.00 0.00 37.40 2.73
2252 2610 6.473758 AGGGAGTATGTTCCTTCAAAAGTAC 58.526 40.000 0.00 0.00 37.40 2.73
2458 2831 9.145865 GTTCATCCTAAGTCAAACTTCTCTAAG 57.854 37.037 0.00 0.00 39.51 2.18
2493 2866 5.001232 ACTGCTTCGCTCCAAAATACTTTA 58.999 37.500 0.00 0.00 0.00 1.85
2494 2867 3.821033 ACTGCTTCGCTCCAAAATACTTT 59.179 39.130 0.00 0.00 0.00 2.66
2509 2882 8.347771 TGCATATCAGATTTTCAATACTGCTTC 58.652 33.333 0.00 0.00 0.00 3.86
2517 2890 9.223099 TCACGATATGCATATCAGATTTTCAAT 57.777 29.630 34.65 14.07 39.23 2.57
2518 2891 8.606040 TCACGATATGCATATCAGATTTTCAA 57.394 30.769 34.65 14.05 39.23 2.69
2534 2910 2.375110 GGCGCACAAATTCACGATATG 58.625 47.619 10.83 0.00 0.00 1.78
2539 2915 2.074353 CACGGCGCACAAATTCACG 61.074 57.895 10.83 1.96 0.00 4.35
2604 2980 6.824305 ACATACAAAAAGAGGTTCCTCATG 57.176 37.500 19.28 13.96 35.67 3.07
2606 2982 8.934023 AAATACATACAAAAAGAGGTTCCTCA 57.066 30.769 19.28 0.00 35.67 3.86
2643 3019 5.030147 ACCTGTCCCACATCAAAGTATCTA 58.970 41.667 0.00 0.00 0.00 1.98
2699 3075 6.053650 CCAAGATAGATCAACTGATTCAGCA 58.946 40.000 13.64 0.00 34.37 4.41
2752 3253 7.214467 TGTTTCTTGAAATCATCTACAACCC 57.786 36.000 0.00 0.00 0.00 4.11
2901 3402 7.290110 ACTCATCGATAATTGGTCACTGATA 57.710 36.000 0.00 0.00 0.00 2.15
2905 3406 6.173339 ACAAACTCATCGATAATTGGTCACT 58.827 36.000 0.00 0.00 0.00 3.41
2951 3452 2.582636 AGCCAGGTATCCATGTTTTCCT 59.417 45.455 0.00 0.00 0.00 3.36
2967 3468 3.211865 TCGTCCATGTACTACTAGCCAG 58.788 50.000 0.00 0.00 0.00 4.85
2970 3471 4.796369 GGAATCGTCCATGTACTACTAGC 58.204 47.826 0.00 0.00 44.26 3.42
2983 3484 4.087182 TCATATAGTGAGGGGAATCGTCC 58.913 47.826 0.00 0.00 36.36 4.79
3316 3885 0.250295 CAGACCCTTGGCGTTTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
3331 3900 2.563179 TCACAGTAGAGGAAAGGCAGAC 59.437 50.000 0.00 0.00 0.00 3.51
3388 3957 3.917985 CGCGTGCACTGCATATATAGTAA 59.082 43.478 25.50 0.00 41.91 2.24
3423 3992 7.062749 ACTTTCAACACCTTCTCTACACATA 57.937 36.000 0.00 0.00 0.00 2.29
3424 3993 5.930135 ACTTTCAACACCTTCTCTACACAT 58.070 37.500 0.00 0.00 0.00 3.21
3425 3994 5.353394 ACTTTCAACACCTTCTCTACACA 57.647 39.130 0.00 0.00 0.00 3.72
3426 3995 5.504173 GCAACTTTCAACACCTTCTCTACAC 60.504 44.000 0.00 0.00 0.00 2.90
3468 4037 4.929808 AGCAAGTACATACTAACACAGCAC 59.070 41.667 0.00 0.00 34.99 4.40
3469 4038 4.929211 CAGCAAGTACATACTAACACAGCA 59.071 41.667 0.00 0.00 34.99 4.41
3470 4039 4.929808 ACAGCAAGTACATACTAACACAGC 59.070 41.667 0.00 0.00 34.99 4.40
3471 4040 5.926542 ACACAGCAAGTACATACTAACACAG 59.073 40.000 0.00 0.00 34.99 3.66
3473 4042 6.780706 AACACAGCAAGTACATACTAACAC 57.219 37.500 0.00 0.00 34.99 3.32
3474 4043 7.663827 ACTAACACAGCAAGTACATACTAACA 58.336 34.615 0.00 0.00 34.99 2.41
3475 4044 9.798994 ATACTAACACAGCAAGTACATACTAAC 57.201 33.333 0.00 0.00 34.99 2.34
3476 4045 9.797556 CATACTAACACAGCAAGTACATACTAA 57.202 33.333 0.00 0.00 34.99 2.24
3477 4046 8.963725 ACATACTAACACAGCAAGTACATACTA 58.036 33.333 0.00 0.00 34.99 1.82
3478 4047 7.837863 ACATACTAACACAGCAAGTACATACT 58.162 34.615 0.00 0.00 38.39 2.12
3479 4048 9.017669 GTACATACTAACACAGCAAGTACATAC 57.982 37.037 0.00 0.00 32.42 2.39
3480 4049 8.963725 AGTACATACTAACACAGCAAGTACATA 58.036 33.333 0.00 0.00 34.13 2.29
3481 4050 7.837863 AGTACATACTAACACAGCAAGTACAT 58.162 34.615 0.00 0.00 34.13 2.29
3482 4051 7.223260 AGTACATACTAACACAGCAAGTACA 57.777 36.000 0.00 0.00 34.13 2.90
3483 4052 9.286946 CTAAGTACATACTAACACAGCAAGTAC 57.713 37.037 0.00 0.00 34.99 2.73
3484 4053 8.464404 CCTAAGTACATACTAACACAGCAAGTA 58.536 37.037 0.00 0.00 34.99 2.24
3485 4054 7.039223 ACCTAAGTACATACTAACACAGCAAGT 60.039 37.037 0.00 0.00 34.99 3.16
3486 4055 7.321153 ACCTAAGTACATACTAACACAGCAAG 58.679 38.462 0.00 0.00 34.99 4.01
3487 4056 7.235935 ACCTAAGTACATACTAACACAGCAA 57.764 36.000 0.00 0.00 34.99 3.91
3488 4057 6.403964 CGACCTAAGTACATACTAACACAGCA 60.404 42.308 0.00 0.00 34.99 4.41
3489 4058 5.970023 CGACCTAAGTACATACTAACACAGC 59.030 44.000 0.00 0.00 34.99 4.40
3490 4059 7.081526 ACGACCTAAGTACATACTAACACAG 57.918 40.000 0.00 0.00 34.99 3.66
3600 4177 1.600957 CATTACAGCTTCCATCCGCAG 59.399 52.381 0.00 0.00 0.00 5.18
3693 4271 3.191581 TGAAAAGTTCAAGCAAACACCGA 59.808 39.130 0.00 0.00 36.59 4.69
4043 4631 4.828939 TCCATCTCTGAACTGTTTGCATTT 59.171 37.500 0.00 0.00 0.00 2.32
4179 4782 5.007626 TCAGTGCACACAAACTACATTCTTC 59.992 40.000 21.04 0.00 0.00 2.87
4180 4783 4.881273 TCAGTGCACACAAACTACATTCTT 59.119 37.500 21.04 0.00 0.00 2.52
4181 4784 4.450976 TCAGTGCACACAAACTACATTCT 58.549 39.130 21.04 0.00 0.00 2.40
4182 4785 4.811555 TCAGTGCACACAAACTACATTC 57.188 40.909 21.04 0.00 0.00 2.67
4183 4786 4.881273 TCTTCAGTGCACACAAACTACATT 59.119 37.500 21.04 0.00 0.00 2.71
4184 4787 4.450976 TCTTCAGTGCACACAAACTACAT 58.549 39.130 21.04 0.00 0.00 2.29
4185 4788 3.867857 TCTTCAGTGCACACAAACTACA 58.132 40.909 21.04 0.00 0.00 2.74
4186 4789 4.875544 TTCTTCAGTGCACACAAACTAC 57.124 40.909 21.04 0.00 0.00 2.73
4187 4790 4.881273 ACATTCTTCAGTGCACACAAACTA 59.119 37.500 21.04 0.00 0.00 2.24
4188 4791 3.696051 ACATTCTTCAGTGCACACAAACT 59.304 39.130 21.04 0.00 0.00 2.66
4189 4792 4.032703 ACATTCTTCAGTGCACACAAAC 57.967 40.909 21.04 0.00 0.00 2.93
4190 4793 4.881273 ACTACATTCTTCAGTGCACACAAA 59.119 37.500 21.04 8.89 0.00 2.83
4191 4794 4.450976 ACTACATTCTTCAGTGCACACAA 58.549 39.130 21.04 9.91 0.00 3.33
4192 4795 4.071961 ACTACATTCTTCAGTGCACACA 57.928 40.909 21.04 0.84 0.00 3.72
4193 4796 5.207768 CAAACTACATTCTTCAGTGCACAC 58.792 41.667 21.04 0.00 0.00 3.82
4194 4797 4.881273 ACAAACTACATTCTTCAGTGCACA 59.119 37.500 21.04 0.00 0.00 4.57
4195 4798 5.207768 CACAAACTACATTCTTCAGTGCAC 58.792 41.667 9.40 9.40 0.00 4.57
4196 4799 4.881273 ACACAAACTACATTCTTCAGTGCA 59.119 37.500 0.00 0.00 0.00 4.57
4197 4800 5.207768 CACACAAACTACATTCTTCAGTGC 58.792 41.667 0.00 0.00 0.00 4.40
4198 4801 5.207768 GCACACAAACTACATTCTTCAGTG 58.792 41.667 0.00 0.00 0.00 3.66
4199 4802 4.275936 GGCACACAAACTACATTCTTCAGT 59.724 41.667 0.00 0.00 0.00 3.41
4200 4803 4.516698 AGGCACACAAACTACATTCTTCAG 59.483 41.667 0.00 0.00 0.00 3.02
4201 4804 4.275689 CAGGCACACAAACTACATTCTTCA 59.724 41.667 0.00 0.00 0.00 3.02
4323 4926 7.890515 TGCAATGGTTTATGAAGTCACATAAA 58.109 30.769 0.00 0.00 44.81 1.40
4359 4973 4.203226 TGTGGCAGTTCTTTGTCAATGTA 58.797 39.130 0.00 0.00 33.93 2.29
4375 4989 9.764363 TGTTATGTAATTATTTGTTTTGTGGCA 57.236 25.926 0.00 0.00 0.00 4.92
4433 5056 5.221303 CCATGTCAAATGAACCAGACACTTT 60.221 40.000 0.00 0.00 43.01 2.66
4492 5115 8.926710 CCTGTGTTGTTATCTACTTTTGTCTAG 58.073 37.037 0.00 0.00 0.00 2.43
4588 5211 1.595311 ATGGGTGCATCTGGGACTTA 58.405 50.000 0.00 0.00 38.05 2.24
4595 5218 2.158564 AGGGATGTTATGGGTGCATCTG 60.159 50.000 0.00 0.00 39.04 2.90
4637 5260 1.826385 ACTAGCATGTTTGACTGCCC 58.174 50.000 0.00 0.00 39.22 5.36
4683 5306 8.210946 TCAAAAGACTTAGGACAGAATTCAGAA 58.789 33.333 8.44 0.00 0.00 3.02
4685 5308 7.969536 TCAAAAGACTTAGGACAGAATTCAG 57.030 36.000 8.44 1.65 0.00 3.02
4700 5323 5.675684 ACCAACAAACCATTCAAAAGACT 57.324 34.783 0.00 0.00 0.00 3.24
4723 5346 2.368548 TGAGAAGCAAGCAAGACCTACA 59.631 45.455 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.