>input_sequence_27902
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----------------------------------------------------CTCGTCTCACTTGCACTCTTCCCCTTCT
CTCAGATCCGGAAACTTGGGGAGACTGGTAGTTGGCTGTTGGGATCGGTCCATCCATCTCAGTGGCAGTCTGGTA-----
---------AT--------------GGGCCTCCTCGACAAGCTGTGGGACGACACCGTCGCGGGGCCCCAACCGGACACC
GGTCTCGGCCGCCTCCGCAAACTCGCCGCCCGCCCCGCCGCCGTCAAGATCAACGGTGACCGCCGCCCGCTAAAAATCGA
CATATTGTTAACCCTCGCCAGATCTTTGTACCATCAATCTGACCAGCTGTTGTGTTGTTGTTTTTTGTCGCGTTGGGT--
--CGTTCAGATGTGGCTCCTGGCGCCGCGACGGTGATCCCACCTACCACGACGGCCGGCGGCGAGGATGCGCCGATGAAA
GTCACGCGCAGCATCATGATTAAGCGGCCGGCGGGGTACCCCTCGTCGCCGAGGAGCGCGGCCAGCACGCCGCCAGCCTC
GCCGCTAGGAACCACGCCGCCCATCTCCCCGTTCGCCGGCGGCGGTGAGTTCCCGTGCCCCTCATCCAACTTCTCACATT
ATTAT-TATTTTTACGGTAGGGGCAGTTCGGCCATTTCGTAGCCGCGTCCATGTGTGCGACGGGGAATGCCCGGGATGGG
TAGCTTTCGTCTATGTGGCTTTTGTCCTGGAGTTCGGAAGGGTCTAGACGGGGCTAGGGACATTTTGGACATTTCTGCCC
GGGCAAGTGCTTTAGCTCTCAGGTC-------------------------------------------------------
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-----TCTTTCGTGGGATCATGACTGGATATCATCGTGTTCGATAAGTTACCATTTATGTGGTGCCTTTGTAATGCAGCA
GCAACCGGATAAGTGTAACTATCAGGCTATAAGGTTTGCCTTCCAAGAGAAAATAGCGACGCCCTTCTGTTTTCTGTTCG
TACAAGAACAAAAAATGGATACGTTTGAT---------CTGTACCAGTATGGAGCTGCTTTATCTAGCACTCCTCCTTGT
GTGCGTGAAGTTGTCAATGGGGTGTTGGCCTAATTGAAGCCAGCTCTCCCGACCCCACTTGACGTTGGATGGCGAAGCCA
GCAATGGACCGTTCGTCAAACCAAGAGCATAGATCC---AGTAATACTATTTCTAATTGGCCACCAAGTCTCCAGAGTGT
ACACAAGAGTTCATACTCCCTCCGTTCCAAAATATATATAGTACTAACTTTTAGAATAGATGACTCAACTTTGTACTAAC
TTTAGTGAAGTTAGTACAAAGTTGAGTCATCTATTTTAGAACAGAGGGAGTACTTTTGAAGGAACATACTCCCTCCG---
-----------GAACTTGTACGTTTGTCCTAAGACAAATTTCTTT-AAGTTTGACCAATTTTGTTGAAAAATATACCAAA
ATCTACAATACCAAATTAGCTTCATTAGATTAGTATAATGACATATATTTTCATACTATATATATTGGAGAGTGTAAATA
TAAAGACACTTTTCTGTAAAGTTGTTTAAACTTAGAGAAGTTTGACTTAGGATGAACCTATAACTTAAAGTATTTTGGAG
CGAAGCAGTAT---TGAAAATCTGATATGCATATCGTGAATTTGTGCGCCGTGGGTGCAGTTAATTGACTTATGCATATG
CTTTGGTTATACCTTCGCTCATGAGGAACCTCTTTTTGTATGTATTTCTGTATGGAAATAGATACTTTGATGTGGGACAG
GTTCTAGTATATTATTTTGCAGTTCTTTGCTTGATGCTGAATCAGTTGATCTATCTTGGGTAAAATATTAC---------
--------------------------------------------------------------------------------
------------------------------------GAGTTAGACAGTGATGGGGTTGTAGATGATTTCAAGAAACAGGG
ATACTTGTACAATTAATCATCGTTCCGTTTTCCAAGTCCACAACTTCGTTTGATTTGTCAGATTCCTGTTGGAAGATTTA
CTTATTATCCCTTGTTGATGCTGTCTTTGTCTACTCTCTTGTATCAGTGACCAATTATCGATGAGTTTGTAAGAATCACA
TGGTAGTGTGTAGGAAAACATGGATACCTGGCTAGTAGTACATGGACGATTCCCCTCACTATATGAAATGCATGCGGCAT
GGAATTGTTCATTCATTTGAACTA-TATTTATATTCTGGAGACTT-ATCTTTTGTGGTTCATT-----------------
----------------------------------------AATTAATTGTTCTTCTTACCTAAACTCGAACGGACTATGT
CTACCAGGTGGTCGGTTCAGAAGGAAATCATCCTCGGATGCGTACGAGAGGGCTACACCACCTGGGGCGTCGACCAGTCA
CCCTCCTCCACCCTTTGAAGTGTGACTGCCCAGCGCGCTCATGCTCGTTTTTGCTCCTCGGCCCGCTCTACTTAATGCAA
GCCCGAGGAGGAAGAGAGGACGTATC---------AGAGAAATCTGAGAAACGCCAAGGGTCTGCCTTTCCTCTACTGTG
ATAGTATAATATAGATGAATGTGTAGTGTTCTGTTTTTACTATATATGCAGTGCACGCGTGTATGGTTATGTATGTGTAG
AGAAGGTGTTGAAAGTTGCTGCTGCTGTGCTGTGCTGTGCTGTGTTAGTATGTACTTGCTGTGTTAGTATGTACTTAGGT
CGTCACCCCTGGGCTGGCACGCAGCTCCTCGTTTGTGTTTTGT--------CTACTATGTTGTGGAGGCCTCGTCCTTCC
ATCACGTTCGTGTGTGCTGCGGATGGAAGCTGTAATGTTAAGTAGGGGGGT-GAGATACGGTGTACGTAGTACGTGTAAT
TTTGCTTGATGGTGTTATCTCGAGTAGTTCTCGGTGTTTGCTTGAACTTTTCAGTATTATCTTCGTGTGTTTGCCATGAT
AATCCCTAGTACTTTCTTCTGCACAGTTACTCTCCGGACGCTGTC-----------------------------------
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>chr4D_1_TraesCS4D01G169100
GAGGAGCCCCCAACCAGGGGGTCGGCTCATTCATCACCCACCCCCTCCACACACACATGCAGGGAGAAGTGGAGAGCTAG
CTCCGTCTTCCTCCTCCACCCAAACAGCTTCAGGAGCACCATTGTAGCCCACTTGTGATCATCATAGTAGATCCGGCAGG
ACTAGGGGTGTCACCTCCCTCGGAGAGCCCGAAACCTGGGTATCGTGTGTCTCGCACCGTTTGTCTCCAATCTCGCCTTC
GGAACCCACCGGCGTCCTTCAGCCCCAACCACGTTTGATAAGCCTACCCATAGCATCTGCCGTGTGCACCCCACGACATT
GCTATTAACCTGACAAAACAAATGTTTAGAGGACCAATAATCATTGAATCTGACTGCTCTGCTGCAGTCACAACTATCAA
TTCTTCGGCCATCAACAAACGGGTGGGCCGTCTATGAAGATGCTAAGCGAGCGATCACATAATTCAGGTATTGCCTTGTT
GTGAAGATAAGTAGAGAGAGTAACCGGGTAGCCCATGAGCTAGCTGCACATTCCAGGGTTCATGGTGATTTTTTCTTCAT
GCAAGTGTGCCGTCTCATATCATACTCATGTGTGTGCATGATTGTAACCTTGATATTTCTGTTTAATATAAGCTCTCTTC
TACGCCTCAAAAATAAATAAATAAATCATAGGTCGCCTCGTCCATTACCCACACAGTACAGTGTATCCGTCCCTAATATG
GTTGTCTCTACACCCGGGGTAGTA-----------CTAGTCACGTGACGCCCGGTATGGCGGGCTCCCACCTGGCGCGTC
GTGAGAGGCCAGCACGAGGGCCATCCCACGAGCACAACCCATCGATCTTATCCGCAGCGGGGCCCACCTGCGCCCCCGCC
AACGCCTTGCAACCCCGCAAG-GAGACATTTCAGTCTGGGCCCACCTGCATTCCCACAGCGCTCCGTAGACCAGGTTCAC
GGGGCACAGTCTCCGGAGGGAAAGGCCAAGCCGCTCTATAAATAAGCTCCTGCTCGTCTCACTTGCACTCTTCCCCTTCT
CTCAGATCCGGAAACTTGGGGAGACTGGTAGTTGGCTGTTGGGATCGGTCCATCCATCTCAGTGGCAGTCTGGTA-----
---------AT--------------GGGCCTCCTCGACAAGCTGTGGGACGACACCGTCGCGGGGCCCCAACCGGACACC
GGTCTCGGCCGCCTCCGCAAACTCGCCGCCCGCCCCGCCGCCGTCAAGATCAACGGTGACCGCCGCCCGCTAAAAATCGA
CATATTGTTAACCCTCGCCAGATCTTTGTACCATCAATCTGACCAGCTGTTGTGTTGTTGTTTTTTGTCGCGTTGGGT--
--CGTTCAGATGTGGCTCCTGGCGCCGCGACGGTGATCCCACCTACCACGACGGCCGGCGGCGAGGATGCGCCGATGAAA
GTCACGCGCAGCATCATGATTAAGCGGCCGGCGGGGTACCCCTCGTCGCCGAGGAGCGCGGCCAGCACGCCGCCAGCCTC
GCCGCTAGGAACCACGCCGCCCATCTCCCCGTTCGCCGGCGGCGGTGAGTTCCCGTGCCCCTCATCCAACTTCTCACATT
ATTAT-TATTTTTACGGTAGGGGCAGTTCGGCCATTTCGTAGCCGCGTCCATGTGTGCGACGGGGAATGCCCGGGATGGG
TAGCTTTCGTCTATGTGGCTTTTGTCCTGGAGTTCGGAAGGGTCTAGACGGGGCTAGGGACATTTTGGACATTTCTGCCC
GGGCAAGTGCTTTAGCTCTCAGGTC-------------------------------------------------------
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-----TCTTTCGTGGGATCATGACTGGATATCATCGTGTTCGATAAGTTACCATTTATGTGGTGCCTTTGTAATGCAGCA
GCAACCGGATAAGTGTAACTATCAGGCTATAAGGTTTGCCTTCCAAGAGAAAATAGCGACGCCCTTCTGTTTTCTGTTCG
TACAAGAACAAAAAATGGATACGTTTGAT---------CTGTACCAGTATGGAGCTGCTTTATCTAGCACTCCTCCTTGT
GTGCGTGAAGTTGTCAATGGGGTGTTGGCCTAATTGAAGCCAGCTCTCCCGACCCCACTTGACGTTGGATGGCGAAGCCA
GCAATGGACCGTTCGTCAAACCAAGAGCATAGATCC---AGTAATACTATTTCTAATTGGCCACCAAGTCTCCAGAGTGT
ACACAAGAGTTCATACTCCCTCCGTTCCAAAATATATATAGTACTAACTTTTAGAATAGATGACTCAACTTTGTACTAAC
TTTAGTGAAGTTAGTACAAAGTTGAGTCATCTATTTTAGAACAGAGGGAGTACTTTTGAAGGAACATACTCCCTCCG---
-----------GAACTTGTACGTTTGTCCTAAGACAAATTTCTTT-AAGTTTGACCAATTTTGTTGAAAAATATACCAAA
ATCTACAATACCAAATTAGCTTCATTAGATTAGTATAATGACATATATTTTCATACTATATATATTGGAGAGTGTAAATA
TAAAGACACTTTTCTGTAAAGTTGTTTAAACTTAGAGAAGTTTGACTTAGGATGAACCTATAACTTAAAGTATTTTGGAG
CGAAGCAGTAT---TGAAAATCTGATATGCATATCGTGAATTTGTGCGCCGTGGGTGCAGTTAATTGACTTATGCATATG
CTTTGGTTATACCTTCGCTCATGAGGAACCTCTTTTTGTATGTATTTCTGTATGGAAATAGATACTTTGATGTGGGACAG
GTTCTAGTATATTATTTTGCAGTTCTTTGCTTGATGCTGAATCAGTTGATCTATCTTGGGTAAAATATTAC---------
--------------------------------------------------------------------------------
------------------------------------GAGTTAGACAGTGATGGGGTTGTAGATGATTTCAAGAAACAGGG
ATACTTGTACAATTAATCATCGTTCCGTTTTCCAAGTCCACAACTTCGTTTGATTTGTCAGATTCCTGTTGGAAGATTTA
CTTATTATCCCTTGTTGATGCTGTCTTTGTCTACTCTCTTGTATCAGTGACCAATTATCGATGAGTTTGTAAGAATCACA
TGGTAGTGTGTAGGAAAACATGGATACCTGGCTAGTAGTACATGGACGATTCCCCTCACTATATGAAATGCATGCGGCAT
GGAATTGTTCATTCATTTGAACTA-TATTTATATTCTGGAGACTT-ATCTTTTGTGGTTCATT-----------------
----------------------------------------AATTAATTGTTCTTCTTACCTAAACTCGAACGGACTATGT
CTACCAGGTGGTCGGTTCAGAAGGAAATCATCCTCGGATGCGTACGAGAGGGCTACACCACCTGGGGCGTCGACCAGTCA
CCCTCCTCCACCCTTTGAAGTGTGACTGCCCAGCGCGCTCATGCTCGTTTTTGCTCCTCGGCCCGCTCTACTTAATGCAA
GCCCGAGGAGGAAGAGAGGACGTATC---------AGAGAAATCTGAGAAACGCCAAGGGTCTGCCTTTCCTCTACTGTG
ATAGTATAATATAGATGAATGTGTAGTGTTCTGTTTTTACTATATATGCAGTGCACGCGTGTATGGTTATGTATGTGTAG
AGAAGGTGTTGAAAGTTGCTGCTGCTGTGCTGTGCTGTGCTGTGTTAGTATGTACTTGCTGTGTTAGTATGTACTTAGGT
CGTCACCCCTGGGCTGGCACGCAGCTCCTCGTTTGTGTTTTGT--------CTACTATGTTGTGGAGGCCTCGTCCTTCC
ATCACGTTCGTGTGTGCTGCGGATGGAAGCTGTAATGTTAAGTAGGGGGGT-GAGATACGGTGTACGTAGTACGTGTAAT
TTTGCTTGATGGTGTTATCTCGAGTAGTTCTCGGTGTTTGCTTGAACTTTTCAGTATTATCTTCGTGTGTTTGCCATGAT
AATCCCTAGTACTTTCTTCTGCACAGTTACTCTCCGGACGCTGTCTGTTCTAAATAAATGTTGTAAATGGTCCGTAACAT
CTGAGAGTGAATACTACTTGCCTCTGCTCTCAATGA--------AGATTGCTCCTAGCACCGTGTCAGTGGCTGGTATTC
CTATGTAAAACAC--AAGATTTAAATTGGGGCATCGAAAGGTTTGAACTAGGCACGACCGTCCGTTCGTAGGATCGCATT
GTGAGTTGACTCACCCGGCTTTCCCACCTCCCTTGCTGTAGGCAGCTTCTCAACTCTGCACATACCGCAGAAATGCAAAC
AGTTCAGAGATGGAGATAGAGAAATAGCAAT---------------GCTTAGTGTAGGGAAAGAAATGTTAGTTTAGTTA
AAGCTAGTGTGTGTATTGTTAGTGCTTATGCTTGTATTTCAGATCATCAGTGTTGTTCACTGAAGAATGTAGTTTGTGTG
CACTGAAGAATGTAGTTTGTGTGCCTGATGATCAGATTATATGCACTAAAAATGGAGTTGTTGTGCAATTCAAAATCCAG
TATATGTGCACTGAAAAATGTAGACCTGAGCAATGACAAATGTTGTTT-----------ATGTGACTTCATAAACCATTG
CAGGTCATAGCTTACATTGACAAAGAACTGCCACAAAACAAATAAT--------TACATAACAACATTCAA-AGAACTCA
TTTAGATTTGACATAAAAGTGTCTGGTTCATTTGACATGGAAGTGCATAATTCAGTTGATATAGAGTGCATCAACTAGAC
AAAAGTAGATAACAACACAGGGTCAGCCATGATCACACAGTTTAGGCCCAATGATCATACATGACACTGATGGACAAGTT
TATAACCAAATAAGTCCCAGATGCACCCATAACATCCCTACCCCTACCCCTGCTCTGTCGGGCAGTCAAACATGCTAGTT
TTGAAAGGCCTGTTGCCACTTTGTCTTCTGAATTCTGTCCTAAGTCTTTTGAATGGTTTGTTGGTTGTAGGTCTTGCTTG
CTTCTCAACCAGTGCTCTCTTCTCAGCTAGGGCTTGCTTCTTAGGGCGTG
>chr4A_2
-AGGAGCCCCTAGACAGGGGGTCGCCTCATTCATCACCCAC---------ACACACATGCATGGAGAAGTGGAGAGCTAG
CTCCTTCTTCCTCATCCACCCAAACAGCTCCAGGTGCACCATTGAAGCCCTCTTATGATCCTCATAATAGATCCGGTAGG
ACTAGGGGTGTTAGCTTGCTCTGAGGGCCCCGAACCTGGGTATCGTGTGTCTCGCACCGCTTGTCTCCAATCTCGCCTTC
GGAACCCACCGGCGTCCTTCGGCCCCAACCATGTTCGATAAGCACACCCATAGCATCTTCCGTGAACACACCACGACACT
GTTGTTAACCTGACAAACCAAATGTTCAAATGACTAATAATTATTGAATCCGATTGCTTTTTTGTAGTCACAACTATCAA
TTCTTCGGCCATCAACAAATCAAACTAGTTGACCATCTA-----------------------------------------
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-----TGAAGATGTTAAGCGAGTGATCTCATAATTCAGGTATTGCCTTGTCATGAAGATAAGTAGAGAGAGTAACCGGGT
AGTCCATGAGCTAGCTGCA------------------------------------------------------------C
ATTCCAGGGTTCATGGTT--------------------------------------------------------------
------------------------------------------------------------------------ATTTTTTC
CTTCCTGCAAGTGTGCCG--------------------------------------------------------------
------------------------------------------------TCTCATATTATACTCATGTGTGAGCATGATTG
TAACCTTG------------------------------------------------------------------------
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--------------------ATATTTCT----GTTTAATATAAGCTCTCTTCTACGC-----------------------
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>chr4A_635
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--------------------------------------------------------------------------CTCTTG
TATGCCTCAAAAGAAAGAAAAACCG---TAGGTCGCCTCGTCCATTACCCACACAGTACAGTGTATCCGT-CCTAATATG
GTTGTCTCTACACCCGGTGGGCACAGGCTTGTCACCTACTCACGTGACGCCCGGTATGGCGGCCTCCCACTTGGCGCGTC
GTGAGAGGCCAGCAGGAGGGCCATCCCACGAGCACAACCCATCGATCTTATCCGCAGCGGGGCCCACCTGCGCCCCCGCC
AACGCTTTGCAACCCCGCAAAAGAGACATTTCAGTTTGGGCCCACCTGCATTCCCACAGAGCTCCGTAGACCAGGTTCAC
GGGG----------------AAAGGCCAAGCCGCTCTATAAATAAGCTCCTGCTCGTCTCACTTGCGCTCTTCCCCTTCT
CTCAGATCCGGAAACTTGGGGAGACTGGTAGTGGGCTGTTCGGATCGGTCCATCCATCTCAGCGGCAGTCTGGTAATTGG
GGACGAGGTAT--------------GGGCCTCCTCGACAAGCTGTGGGACGACACCGTCGCGGGGCCCCAACCGGACACC
GGTCTCGGCCGCCTCCGCAAACTCGCCGTCCGCCCCGCCGCCGTCAAGATCAACGGTGACCGCTGCCCGCTAAAGATCGA
CATATTGTTAACCCTCGCCAGATCTTTGTACCATCAATCTGACCAGCTGTTTTGTTGTTGTTTTTTGTCGCGTTGGGT--
--CGTTCAGATGTGGCTCCGGGCGCCGCGATGGTGATCCCACCTACCACGCCGGCCGGCGGCGAGGATGCGCCGATGAAA
GTCACGCGCAGCATCATGATTAAGCGGCCGGCGGGGTACCCCTCGTCGCCGAGGAGCGCGGCCAGCACGCCGCCAGCCTC
GCCGCTAGGATCCACGCCGCCCATCTCCCCGTTCGCCGGCGGCGGTGAGCTCCCGTGCCCCTCATCCAACTTCTCGCATT
A--AT-TTTTTTTACGGTAGGGGCAGTTCGGCCATTTCGTAGCCGCGTCCATGTGTGCGACGGGGAATGCCCGGGATGTG
TAGGTTTCGTCTATGTGGCTTTTGTCCTGGAGTTCGGAAGTGTCTAGACGGGGCTAGGGACATTTTGGACATTTCTGCCC
GGGCAAGTGCTTTACCTCGCACGCCATGTAGGATCGGATATGACGTAAAGTAGTTTCGGATAGGGAAGTGGGATCCTCTC
CGCAAGGCGGGTGCTTGAAGAAAAAAAGTGTGATTCGATGACAAAAGCTGAAAAAATTGGAGTGAAAAGTAGAGATGCAT
TTGTACTTAGAGTCCTTATTTTCTATTTCTTAATGAGACCCACTAGTGATAGCTTGTATTAGAGAGAAAAAATTAATATA
GATGCCTTAATTTACTTTTTGTCATGGGGCATATGTATCCATTTGTATCCATATGTTACCATTGTACATGCCCTTAGCTC
TCGGGTCTTTCGTGGGATCATGACTGGATATCATCGTGTTCGATAAGTTACCATTTATGTGGTGTCTTTGAAATGCAGCG
GCAACCGGATAAGTGTAGCTATCAGGCTGTAAGGTTTGCCTTCCAAGAGAAAATAGCGACGCCTTTCTGTTTTCTGTTCG
TAGAAGAACAAAAAATG---------GAT---------CTGTACCAGTATGGAGCTGCTTTATCTAGTA---CTCCTTGT
GTGCGTGAAGTTGTCAATGGGGTGTTGGCCTAATTGAAGCCAGCTCTCCCGACCCCACTTGACGTTGGATAGCGAAGCCA
GCAATGGACCGTTCGTCAAGCCAAGAGCATAGACCTAGTAGTAATACTATTTCTAATTGGTCACCAAGTCTCCAGAGTGC
ACACAAGAGTTCATACTT--------------------------------------------------------------
------------------------------------------------------------------------CTCCGTTC
CAAAATACTTGGAAGTTCTAGGTT-GTCCCAAGACAATTTTTTTTCAAGTTTGACCAAGTTTGTAGAAAAATATACCAAA
ATCTTCTACCTTT---------------------------------------ATACTTTATATATTTGACAGTGTAAATA
TTAGAAAACTTTTCTA-----------ACAGTTGGTTAAGTTAGCCTTAAGACAAACCTACA------------------
-------------------------------TATTGTGAATTTGTGTGCCGTGGGTGCAGTTAATTTACTTATGGATATG
CTCTGGTTATACCTATGCTTACGAGGAACCTCTTTTTGTTTGTATTTCTGTATGGAAACAGATACTTTGATGTTGAACAG
GTTCTGGTATATTATTTTGCAGATCTGTGCTTGAGGTTGAATCAGTTTATCTATCTTGGGTAAAATATTAC---------
--------------------------------------------------------------------------------
------------------------------------GACTTAGACAGTGATGTGGTTGTAGATGATTTCAAGAAACAGGG
ATACTTGTACAATTAATCATCGTTCCGCTTTCCAAGTCCACAACTTCGTTTGACTTGTCAGATTCCTGTTGGAAGATTTA
CTTATTATCCCTTGTTGATGCTGTCTTTGTCTACTCAC---------TGACCAATTATGGAAGAGTTTGTAAGAATCACA
TGGTAGTGTGTGGGAAAACATGGATACATG---------------------------------------GCATGCGGCAT
GGAATTTTTCATTTATTTGTATATTTAT----ATTCTATATACATCATCTTTTGTGGTTCATTAATTAAATTCTTTTTCC
ACACAAACAAAATTAATTGTTCTTCTTTTTTGTTGAACTAAATTAATTGTTCTTCTTACCTAAACTCGAACGGACTATGT
TTACCAGGTGGTCGCTTCAGAAGGAAATCATCCTCGGATGCATACCAGAGGGCTACCA---CTGGGGCGTCGACCAGTCA
CCCTCCTCCCCCCTTTGAGGTGTGACTGCCCAGCGCGCTCATGCTCCTTTTTGCTCCTCGGCCCGCTCTACTTCATGCAA
GGCAGTGGAGGAGAAAGAGAAGACATATCATCGTTAGAGAAATC-GAGAAACGCCGAGGATCTGCCGTACCTCTACTGTG
ATAGTATAATATAGATGAATGTGTAGTGTTTTGTTTCTACTATATATGCAGTGCACGCGTGTATGGTTATG----TGTAG
AGAAGGCGTTGAAAGTTGCTGCTGCTGTGCTGTGTTAGTAT-------------------------GTACGTACTTAGGT
C---GCCCCTATGCTGGCACGCAGCTCCTCGTTTGTGTTTTGCTGTTTTGCCTACTATGTTGTGGAGGCCTCGTCCTTCC
ATCACGTTCGTGTGTGGTGCGGATGAAAGCTGTAATGTTAAGTAGGGGGGGCGAGATATGGTGTACGTAGTACGTGTAAT
TTTGTTTCATGGTGTTGTCTCAAGTAGTTCCTGGTGCTTGCTTGAACTTTTATGTATTATCTTTGTGTGTTTGCCATGAT
AATCCCTAGTATTTTATCCTGCATGCTTACTCTCCGGACGCTGTCTGTTCTTAATAAATGTTGTAAATGGTCCATAATAC
CTGAGAGCAAATACTACTTGCCTCTGCTCTCGATGAAGAATTGAAGATTGCTCCTAGCACCGTGTCAGTGGCTGGTATTC
CTATAGAAAACACGGAAGATTTAAATTGGGTCATCGAAAGGTTTGAAGCAGGCACGACCTTTCGTTTGTAGGATCACATT
G-------------------------------------------------------------------------------
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>chr4B_756
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----------------------------------------------ACGCCCGGTATGGCGGCCTCCCACCTGGCGCGTT
GTGAGAGGCCAGCACGAGGGCCATCCCACGAGCACAACCCATCGATCTTATCCGCAGCGGGGCCCACCTGCGCCCCCGCC
AACGCCTTGCAACCCCGCAAG-GAGACATTTCAGTATGGGCCCAGCTGCATTCCCACAGCGCTCCGTAGACCAGGTTCAC
GGGGCACAGTCTCTTGAGGGAAAGGCCAAGCCGCTCTATAAATAAGCTCCTGCTCGTCTCACTTGCACTCTTCCCCTTCT
CTCAGATCCGAAAACTCGGGGAGACTGGTAGTTGGCTGTTCGGATCGGTCCATCCATCTCAGTGGCAGTCTGGTA-----
---------ATTGGGGACGAGGTATGGGCCTCCTCGACAAGTTGTGGGACGACACCGTCGCGGGGCCCCAACCGGACACC
GGCCTCGGCCGCCTCCGCAAACTCGCCGCCCGCCCCGCCGCCGTCAAGATCAACGGTGACCGCTGCCCGCTAAAACTCGA
CATATTGTTAACCCCCGCCAGATCTTTGTACCATCAATCTGACCAACTGTTGTGTTGTCGTTTTTTGTCGCGTTGGGTCT
CCCGTTCAGATGTGGCTCCGGGCGCCGCGACGGTGATCCCACATACGACGCCGGCCGGCGGCGAGGATGCGCCGATGAAA
GTCACACGCAGCATCATGATTAAGCGGCCGGCGGGGTACCCCTCGTCGCCGAGGAGCGCGGCCAGCACGCCGCCAGCCTC
GCCGCTAGGATCCACGCCGCCCATCTCCCCGTTCGCGGGCGGCGGTGAGTTCCCGTGCCCCTCATCCAACTTCTCGCATT
A--ATATTTTTTTACGGTAGGGGCAGTTCGGCCATTTCGTAGCCGCGTCCATGTGTGCGACGGGGAATGCCCCGGATGTG
-----------------GCTTTTGTGCTGGAGTTCGGAAGGGTCTAGACGGGGCTAGGGACATTTTGGACATTTCTGCCC
GGGCAAGTGCTTTAGCTCTCGGGTC-------------------------------------------------------
--------------------------------------------------------------------------------
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-----TCTTTCGTGGGATCATGGCTGGATATCATCGTGTTCGATAAGTTACCATTTATGTGGTGCCTTTGAAATGCAGCA
GCAACCGGATAAGTGTAACTATCAGTCTGTAAGGTTTGCCTTCCAAGAGAAAATAGCGACGCCCTTCTGTTTTCTGTTCG
TAGAAGAACAAAAAATG---------GATAAGTTTGATCTGTACCAGTATGGAGCTGCTTCATCTAGTA---CTCCTTGT
GTGCGTGAAGTTGTCAATGGGGTGTTGGCCTAATTGAAGCCAGCTCTCCCGACCCCACTTGACGTTGGATAGCGAAGCCA
GCAATGGA--------CAAACCAAGAGCATAGATCC---AGTAATACTATTTCTAATTGGCCACCAAGTCTCCAG--TGT
ACACAAGAGTTCATA-----------------------------------------------------------------
--------------------------------------------------TACTTTTGAAGGAACATACCCCCTCCGTTC
CAAAATACTTCGAACTTCTACGTTTGTCCTAAGGCAAATTTCTGT-AAGTTTGACCAATTTTGTTGAAAAATATACCAAA
ATCTACAATACCAAATTAGCTTCATTAGATTAGTA--ATGACATATATTTTCATACTATATATATTTGAGAGTGTAAATA
TAAAGAAACTTTTCTATAAAGTTGTTTAAATTTAGAGAAGTTTGACTTAGGATGAATCTATAACT--AAGTATTTTGGAG
CAAAGGCAGTATTATGAAAATCTGATATGTATATTGTGAATTTGTGCGCCGTGGGTGCAGTTAATTGACTTAGTCATATG
CTTTGGTTATACCTTCGCTTACAAGGAACCTCTTT--GTATGTATTTCTGTATGGAAACAGATACTTTGATGTGGAACAG
GTTCTAGTATATAATTTTGCAGTTCTTTGCTTGAGGCTGAATCAGTTGATCTATCTTGGGTAAAATATTACTCCCTCCGT
CCCAAAATTCATGTCTTAGATTTGTCTAGATACGGATGTATCTAATACTAAGACATGACTTGATACATCCATATTTAGAC
AAATGTAAGACACGAATTTTGGGACGGAGGGAGTACGAGTTAGACAGTGATGAGGTTGTAGATGATTTCAAGAAACAGGG
ATACTTGTACAATTAATCATCGTTCCGTTTTCCAAGTCTACAACTTTGTTTGATTTGTCAGGTTCCTGTTGGAAGATTTA
CTTATTATCCCTTGTTGATGCTGTCTTTGTCTACTCTCTTGAATCGGTCACCAATTATCGATGAGTTTGTAAGAATCACA
TGGTAGTATGTGGGAAAACATGGAT------CTAGTAGTACATAGACGATTCCCCTCACTATATGAAATGCATGCGGCAT
GGAAATGTTAATTCATTTGTATATTTATTTATATTCTGGAGACGTCATCTTTTGTGGTTCATT-----------------
----------------------------------------AATTAATTGTTCTTCTTACCTAAACTCGCACGGACTATGT
CTACCAGGTGGTCGCTTCAGAAGGAAATCATCATCAGATGCGTACGAGAGGGCTACACCACCTGGGGCGTCGACCAGTCA
CCCTCCTCCACCCTTTGAAGTGTAACTGACCAGCACGCTCATGCTCGTTTTTGCTCCTCT-CCCGCTCTACTTAATGCAA
GCCCGAGGAGGAAGAGAGGACGTATC---------AGAGAAATC-GAGAAACGCCAAGGATCTGCCTTTCCTCTACTGTG
ATAGTATAATATAGATGAATGTGTAGTGTTCTGTTTCTACTATATATGCAGTGCATGCGTGTATGGTTATG----TGTAG
AGAAGGTGTTGAAAGTTGCTGCTGCTGTGCTGTGC------------------------TGTGTTAGTATGTACTTAGGT
C---ACCCCTGGGCTGGCACGCAGCTCCTCGTTTGTGTTTTGT--------CTACTATGTTGTGGAGGCCTCGTCCTTCC
ATCACGTTCGTGTGTGGTGCGGATGGAAGCTGTAATGTTAAGTAGGGGGAT-GAGATACGGTGTACGTAATATGTGTAAT
TTTGCTTGATGGTGTTATCTCGAGTAGTTCCCGGTGTTTGCTTGAACTTTTCAGTATTATCTTCGTGTGTTTGCCATGAT
AATCCCTAGTACTTTCGTCTGCACAGTTACTCTCTGGACGCTGTTTGTTCTAAATAAATCTTGTAAATGGTCCGTAACAT
CTGAGAGTGAATACTACTTGCCTCTGCTCTCAATGA--------AGATTGCTCCTAACACCGTGTCAGTGGCTGGTATTC
CTATGTAAAACACATAAGATTTAAATTGGGGCATCGAAAGGTTTGAACTAGACACGACCGTCCGTTCGTAGGATCGCATT
GCGAGTTGACTCACCCGGCTTTCCCACCTCCCTTGCTGTAGGCAGCTTCTCAACTTTGCACATACCGCAGCAATGCAAAC
AGTTCAGAGATGGAGATAGAGAAATAGCAATGCTCATTTTAGCAATGCTTAGTGTAGGGAAAGAAATGTTAGTTTAGTTA
AAGCTAGTGTGTGTATTGTTAGTGCTTATGCTTGTATTTCAGATCATCAGTGTTGTTCACT-------------------
----GAAGAATGTAGTTTGTGTGCCTGATGATCAGATTATATGCACTAAAAATGGAGTTGTTGTGCAATTCAAAATCCAG
TATATGTGCACTGAAAAATGTAGACCTGAGCAATGACAAATGTTAATTCTTTATTTGCAATGTGACTTCATAAACCATTG
CAGGTCATAGCTGACATTGACAAAGAACAGCCACAAAGCAAACAATGATAGAAATACATAACAACATTCCAGAGAACTCA
TTCAGATTTGACATAGAAGTGTCTGGTTCATTTGACATGGAAGTGCATAATTCAGTTGATATAGAGTGCATCAAGTAGAC
AAAAGTAGATAACAACACAGGGTCAGCCATGATCACACAGTTTAGGCCCAATGATCATACATGACACTGATGGACAAGTT
TATAACCAAAAAAGTCCTAGATGCACCCATAACATCCCTACCCCTACCCCTGCTCTGTCAGGCAGTCAAACATGCTAGTT
TTGAAAGGCCTGTTGCCACTTTGTCCTATGAATTCTGTCCTAGGTCTTTTGAATGGTTTGTTGGTAGTAGGTCTTGCTTG
CTTCTCAACCAGTGCTCT--TCTCAGCTAGGGGCTTCTTAG---------
>SNPs
S---------S-SS----------S----------------SSSSSSSSS-----------S------------------
----S--------S---------------S----S---------S-----S---S-----S-----S---------S---
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-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----------
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>forward_516
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----------------AGAGTAACCGGGTAGCCCAT--------------------------------------------
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>reverse_2310
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---------------------------------------------------------------------CTCCTCCTTGT
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>forward_743
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---GTCTCTACACCCGGGGTAGT---------------------------------------------------------
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>reverse_2312
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-----------------------------------------------------------------------CCTCCTTGT
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>forward_1380
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GTCGTTCAGATGTGGCTCCT------------------------------------------------------------
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--------------------------------------------TGAGAAACGCCAAGGGTCTG----------------
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>forward_1596
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--------------------------------------------------------GCCCCTCATCCAACTTCTCA----
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-----------------------------------------------------------GTCTGCCTTTCCTCTACTGTG
A-------------------------------------------------------------------------------
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>forward_2509
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--------GTTCATACTCCCTCCGTTCCA---------------------------------------------------
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>reverse_4177
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----------------CTGCGGATGGAAGCTGTAATG-------------------------------------------
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>forward_4048
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----------------------------GCTGTGCTGTGCTGTGTTAG--------------------------------
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>reverse_5211
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----------TAAGTCCCAGATGCACCCAT--------------------------------------------------
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--------------------------------------------------
