Multiple sequence alignment - TraesCS4D01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G148800 chr4D 100.000 2815 0 0 1 2815 150905997 150908811 0.000000e+00 5199.0
1 TraesCS4D01G148800 chr4D 90.800 250 22 1 2566 2815 28551102 28550854 1.620000e-87 333.0
2 TraesCS4D01G148800 chr4A 91.687 1239 64 13 448 1659 250949338 250950564 0.000000e+00 1681.0
3 TraesCS4D01G148800 chr3B 91.849 1006 54 11 678 1662 141629428 141628430 0.000000e+00 1378.0
4 TraesCS4D01G148800 chr3B 93.617 423 26 1 1 423 616170405 616169984 5.120000e-177 630.0
5 TraesCS4D01G148800 chr3B 94.624 93 4 1 565 656 141630843 141630751 2.920000e-30 143.0
6 TraesCS4D01G148800 chr3B 86.400 125 9 1 458 574 141632307 141632183 2.280000e-26 130.0
7 TraesCS4D01G148800 chr2B 93.609 798 31 7 2033 2815 728615293 728616085 0.000000e+00 1173.0
8 TraesCS4D01G148800 chr2B 92.757 428 25 2 1 424 765402900 765403325 5.150000e-172 614.0
9 TraesCS4D01G148800 chr2B 92.706 425 28 2 1 423 651356458 651356881 6.670000e-171 610.0
10 TraesCS4D01G148800 chr2B 89.423 208 16 5 1862 2064 439913389 439913183 1.000000e-64 257.0
11 TraesCS4D01G148800 chr2B 93.038 158 10 1 1863 2020 563666707 563666863 2.180000e-56 230.0
12 TraesCS4D01G148800 chr2B 89.944 179 12 5 1862 2035 439894690 439894513 2.820000e-55 226.0
13 TraesCS4D01G148800 chr2B 88.710 186 15 4 1863 2043 563618640 563618824 3.650000e-54 222.0
14 TraesCS4D01G148800 chr7B 92.543 818 40 8 2014 2815 517843016 517843828 0.000000e+00 1153.0
15 TraesCS4D01G148800 chr7B 92.421 818 41 8 2014 2815 107641329 107640517 0.000000e+00 1147.0
16 TraesCS4D01G148800 chr7B 92.902 803 32 8 2033 2815 93325983 93325186 0.000000e+00 1144.0
17 TraesCS4D01G148800 chr5A 92.298 818 42 8 2014 2815 669593674 669592862 0.000000e+00 1142.0
18 TraesCS4D01G148800 chr5A 81.907 514 63 22 2254 2748 693606153 693606655 9.390000e-110 407.0
19 TraesCS4D01G148800 chr5A 93.548 155 10 0 1863 2017 345757411 345757565 6.060000e-57 231.0
20 TraesCS4D01G148800 chr4B 92.054 818 44 8 2014 2815 175557900 175557088 0.000000e+00 1131.0
21 TraesCS4D01G148800 chr1A 91.687 818 47 8 2014 2815 74102925 74102113 0.000000e+00 1114.0
22 TraesCS4D01G148800 chr5D 93.868 424 26 0 1 424 401314828 401314405 8.500000e-180 640.0
23 TraesCS4D01G148800 chr2D 93.160 424 29 0 1 424 333497987 333497564 8.560000e-175 623.0
24 TraesCS4D01G148800 chr3D 92.925 424 28 2 1 422 596773194 596772771 1.430000e-172 616.0
25 TraesCS4D01G148800 chr3D 92.757 428 26 3 1 425 15914284 15913859 5.150000e-172 614.0
26 TraesCS4D01G148800 chr3D 92.689 424 31 0 1 424 448746623 448746200 1.850000e-171 612.0
27 TraesCS4D01G148800 chr7D 92.908 423 28 2 1 422 413996652 413996231 5.150000e-172 614.0
28 TraesCS4D01G148800 chr6A 81.977 516 59 23 2254 2748 14150206 14149704 9.390000e-110 407.0
29 TraesCS4D01G148800 chr2A 83.062 307 31 13 1862 2161 762400236 762399944 2.780000e-65 259.0
30 TraesCS4D01G148800 chr2A 90.625 192 13 1 1859 2045 43670283 43670092 1.670000e-62 250.0
31 TraesCS4D01G148800 chr2A 91.011 178 11 1 1863 2035 43663385 43663208 4.690000e-58 235.0
32 TraesCS4D01G148800 chr1B 90.751 173 11 4 1863 2030 623242851 623242679 2.820000e-55 226.0
33 TraesCS4D01G148800 chr3A 97.368 38 1 0 1675 1712 597235295 597235332 6.510000e-07 65.8
34 TraesCS4D01G148800 chr3A 92.683 41 3 0 1675 1715 9444347 9444307 3.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G148800 chr4D 150905997 150908811 2814 False 5199.000000 5199 100.000000 1 2815 1 chr4D.!!$F1 2814
1 TraesCS4D01G148800 chr4A 250949338 250950564 1226 False 1681.000000 1681 91.687000 448 1659 1 chr4A.!!$F1 1211
2 TraesCS4D01G148800 chr3B 141628430 141632307 3877 True 550.333333 1378 90.957667 458 1662 3 chr3B.!!$R2 1204
3 TraesCS4D01G148800 chr2B 728615293 728616085 792 False 1173.000000 1173 93.609000 2033 2815 1 chr2B.!!$F4 782
4 TraesCS4D01G148800 chr7B 517843016 517843828 812 False 1153.000000 1153 92.543000 2014 2815 1 chr7B.!!$F1 801
5 TraesCS4D01G148800 chr7B 107640517 107641329 812 True 1147.000000 1147 92.421000 2014 2815 1 chr7B.!!$R2 801
6 TraesCS4D01G148800 chr7B 93325186 93325983 797 True 1144.000000 1144 92.902000 2033 2815 1 chr7B.!!$R1 782
7 TraesCS4D01G148800 chr5A 669592862 669593674 812 True 1142.000000 1142 92.298000 2014 2815 1 chr5A.!!$R1 801
8 TraesCS4D01G148800 chr5A 693606153 693606655 502 False 407.000000 407 81.907000 2254 2748 1 chr5A.!!$F2 494
9 TraesCS4D01G148800 chr4B 175557088 175557900 812 True 1131.000000 1131 92.054000 2014 2815 1 chr4B.!!$R1 801
10 TraesCS4D01G148800 chr1A 74102113 74102925 812 True 1114.000000 1114 91.687000 2014 2815 1 chr1A.!!$R1 801
11 TraesCS4D01G148800 chr6A 14149704 14150206 502 True 407.000000 407 81.977000 2254 2748 1 chr6A.!!$R1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 3335 0.035458 AGTTGTTCCTTCTCCTGCCG 59.965 55.0 0.0 0.0 0.0 5.69 F
1663 4348 0.108804 GCGTTGCTGCTGGAGTAGTA 60.109 55.0 0.0 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 4389 0.175989 GCAGCTTAGCTACCTCCGTT 59.824 55.000 6.35 0.0 36.40 4.44 R
2603 5321 3.239253 AAACGACGCCCTGGAGGT 61.239 61.111 0.00 0.0 38.26 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.790285 ACATGTTAAAATCGAAGTTACGGT 57.210 33.333 0.00 0.00 0.00 4.83
41 42 7.193377 ACATGTTAAAATCGAAGTTACGGTT 57.807 32.000 0.00 0.00 38.26 4.44
42 43 7.641760 ACATGTTAAAATCGAAGTTACGGTTT 58.358 30.769 0.00 0.00 46.24 3.27
43 44 8.772705 ACATGTTAAAATCGAAGTTACGGTTTA 58.227 29.630 0.00 0.00 44.08 2.01
44 45 9.596677 CATGTTAAAATCGAAGTTACGGTTTAA 57.403 29.630 0.00 0.00 44.08 1.52
46 47 9.994432 TGTTAAAATCGAAGTTACGGTTTAAAA 57.006 25.926 0.00 0.00 44.08 1.52
52 53 7.264448 TCGAAGTTACGGTTTAAAAGATACG 57.736 36.000 0.00 0.00 0.00 3.06
53 54 6.861055 TCGAAGTTACGGTTTAAAAGATACGT 59.139 34.615 0.00 0.00 38.23 3.57
54 55 8.018520 TCGAAGTTACGGTTTAAAAGATACGTA 58.981 33.333 0.00 0.00 35.97 3.57
55 56 8.798153 CGAAGTTACGGTTTAAAAGATACGTAT 58.202 33.333 8.05 8.05 36.80 3.06
200 201 7.739498 AACATGTTTAAATCGGAGTTACAGT 57.261 32.000 4.92 0.00 0.00 3.55
201 202 7.739498 ACATGTTTAAATCGGAGTTACAGTT 57.261 32.000 0.00 0.00 0.00 3.16
202 203 8.161699 ACATGTTTAAATCGGAGTTACAGTTT 57.838 30.769 0.00 0.00 0.00 2.66
203 204 9.275398 ACATGTTTAAATCGGAGTTACAGTTTA 57.725 29.630 0.00 0.00 0.00 2.01
213 214 8.712285 TCGGAGTTACAGTTTAAAAGATATGG 57.288 34.615 0.00 0.00 0.00 2.74
214 215 8.533657 TCGGAGTTACAGTTTAAAAGATATGGA 58.466 33.333 0.00 0.00 0.00 3.41
215 216 9.326413 CGGAGTTACAGTTTAAAAGATATGGAT 57.674 33.333 0.00 0.00 0.00 3.41
218 219 9.975218 AGTTACAGTTTAAAAGATATGGATGGT 57.025 29.630 0.00 0.00 0.00 3.55
237 238 9.757227 TGGATGGTTTAGAAAAGTATTTGTTTG 57.243 29.630 0.00 0.00 39.02 2.93
238 239 9.974980 GGATGGTTTAGAAAAGTATTTGTTTGA 57.025 29.630 0.00 0.00 39.02 2.69
255 256 8.829514 TTTGTTTGACTTAAATATAATCCGCG 57.170 30.769 0.00 0.00 0.00 6.46
256 257 6.950545 TGTTTGACTTAAATATAATCCGCGG 58.049 36.000 22.12 22.12 0.00 6.46
257 258 6.762187 TGTTTGACTTAAATATAATCCGCGGA 59.238 34.615 33.12 33.12 0.00 5.54
258 259 7.442969 TGTTTGACTTAAATATAATCCGCGGAT 59.557 33.333 34.60 34.60 36.23 4.18
259 260 6.961359 TGACTTAAATATAATCCGCGGATG 57.039 37.500 39.53 25.07 34.70 3.51
260 261 5.872617 TGACTTAAATATAATCCGCGGATGG 59.127 40.000 39.53 21.15 34.70 3.51
261 262 6.045072 ACTTAAATATAATCCGCGGATGGA 57.955 37.500 39.53 29.74 43.58 3.41
262 263 6.469410 ACTTAAATATAATCCGCGGATGGAA 58.531 36.000 39.53 27.33 42.46 3.53
263 264 7.110155 ACTTAAATATAATCCGCGGATGGAAT 58.890 34.615 39.53 31.01 42.46 3.01
264 265 8.262227 ACTTAAATATAATCCGCGGATGGAATA 58.738 33.333 39.53 31.92 42.46 1.75
265 266 6.920569 AAATATAATCCGCGGATGGAATAC 57.079 37.500 39.53 0.00 42.46 1.89
266 267 2.754946 TAATCCGCGGATGGAATACC 57.245 50.000 39.53 0.00 42.46 2.73
267 268 1.056660 AATCCGCGGATGGAATACCT 58.943 50.000 39.53 19.75 42.46 3.08
268 269 1.933021 ATCCGCGGATGGAATACCTA 58.067 50.000 38.62 8.74 42.46 3.08
269 270 1.707106 TCCGCGGATGGAATACCTAA 58.293 50.000 27.28 0.00 34.30 2.69
270 271 2.040939 TCCGCGGATGGAATACCTAAA 58.959 47.619 27.28 0.00 34.30 1.85
271 272 2.435069 TCCGCGGATGGAATACCTAAAA 59.565 45.455 27.28 0.00 34.30 1.52
272 273 3.118334 TCCGCGGATGGAATACCTAAAAA 60.118 43.478 27.28 0.00 34.30 1.94
273 274 3.250040 CCGCGGATGGAATACCTAAAAAG 59.750 47.826 24.07 0.00 37.04 2.27
274 275 3.875134 CGCGGATGGAATACCTAAAAAGT 59.125 43.478 0.00 0.00 37.04 2.66
275 276 4.334481 CGCGGATGGAATACCTAAAAAGTT 59.666 41.667 0.00 0.00 37.04 2.66
276 277 5.524646 CGCGGATGGAATACCTAAAAAGTTA 59.475 40.000 0.00 0.00 37.04 2.24
277 278 6.037391 CGCGGATGGAATACCTAAAAAGTTAA 59.963 38.462 0.00 0.00 37.04 2.01
278 279 7.415229 GCGGATGGAATACCTAAAAAGTTAAG 58.585 38.462 0.00 0.00 37.04 1.85
279 280 7.468220 GCGGATGGAATACCTAAAAAGTTAAGG 60.468 40.741 0.00 0.00 37.04 2.69
280 281 7.012989 CGGATGGAATACCTAAAAAGTTAAGGG 59.987 40.741 4.40 0.00 37.04 3.95
281 282 7.837689 GGATGGAATACCTAAAAAGTTAAGGGT 59.162 37.037 4.40 0.00 37.04 4.34
282 283 9.251440 GATGGAATACCTAAAAAGTTAAGGGTT 57.749 33.333 0.00 0.06 37.04 4.11
283 284 9.610104 ATGGAATACCTAAAAAGTTAAGGGTTT 57.390 29.630 0.00 0.00 37.04 3.27
284 285 9.436866 TGGAATACCTAAAAAGTTAAGGGTTTT 57.563 29.630 0.00 0.00 37.04 2.43
311 312 8.779603 TTTTTAACTGTAAAATAACGGTTCGG 57.220 30.769 4.57 0.00 43.84 4.30
312 313 7.489574 TTTAACTGTAAAATAACGGTTCGGT 57.510 32.000 4.57 0.00 43.84 4.69
313 314 4.996062 ACTGTAAAATAACGGTTCGGTG 57.004 40.909 0.00 0.00 35.39 4.94
314 315 4.379652 ACTGTAAAATAACGGTTCGGTGT 58.620 39.130 0.00 0.00 35.39 4.16
315 316 4.448732 ACTGTAAAATAACGGTTCGGTGTC 59.551 41.667 0.00 0.00 35.39 3.67
316 317 4.375272 TGTAAAATAACGGTTCGGTGTCA 58.625 39.130 0.00 0.00 0.00 3.58
317 318 3.883631 AAAATAACGGTTCGGTGTCAC 57.116 42.857 0.00 0.00 0.00 3.67
318 319 2.825861 AATAACGGTTCGGTGTCACT 57.174 45.000 2.35 0.00 0.00 3.41
319 320 2.825861 ATAACGGTTCGGTGTCACTT 57.174 45.000 2.35 0.00 0.00 3.16
320 321 3.940209 ATAACGGTTCGGTGTCACTTA 57.060 42.857 2.35 0.00 0.00 2.24
321 322 2.600470 AACGGTTCGGTGTCACTTAA 57.400 45.000 2.35 0.00 0.00 1.85
322 323 2.600470 ACGGTTCGGTGTCACTTAAA 57.400 45.000 2.35 0.00 0.00 1.52
323 324 3.116079 ACGGTTCGGTGTCACTTAAAT 57.884 42.857 2.35 0.00 0.00 1.40
324 325 3.062042 ACGGTTCGGTGTCACTTAAATC 58.938 45.455 2.35 0.00 0.00 2.17
325 326 2.414138 CGGTTCGGTGTCACTTAAATCC 59.586 50.000 2.35 0.00 0.00 3.01
326 327 2.414138 GGTTCGGTGTCACTTAAATCCG 59.586 50.000 2.35 0.00 39.40 4.18
327 328 2.373540 TCGGTGTCACTTAAATCCGG 57.626 50.000 2.35 0.00 38.70 5.14
328 329 1.894466 TCGGTGTCACTTAAATCCGGA 59.106 47.619 6.61 6.61 38.70 5.14
329 330 1.997606 CGGTGTCACTTAAATCCGGAC 59.002 52.381 6.12 0.00 35.25 4.79
330 331 2.353406 CGGTGTCACTTAAATCCGGACT 60.353 50.000 6.12 0.00 35.25 3.85
331 332 3.000727 GGTGTCACTTAAATCCGGACTG 58.999 50.000 6.12 0.00 0.00 3.51
332 333 3.556423 GGTGTCACTTAAATCCGGACTGT 60.556 47.826 6.12 0.00 0.00 3.55
333 334 3.432252 GTGTCACTTAAATCCGGACTGTG 59.568 47.826 6.12 11.74 0.00 3.66
334 335 3.000727 GTCACTTAAATCCGGACTGTGG 58.999 50.000 6.12 0.00 0.00 4.17
335 336 2.901192 TCACTTAAATCCGGACTGTGGA 59.099 45.455 6.12 0.00 40.46 4.02
342 343 3.652057 ATCCGGACTGTGGATTGATTT 57.348 42.857 6.12 0.00 43.76 2.17
343 344 2.985896 TCCGGACTGTGGATTGATTTC 58.014 47.619 0.00 0.00 0.00 2.17
344 345 2.304470 TCCGGACTGTGGATTGATTTCA 59.696 45.455 0.00 0.00 0.00 2.69
345 346 3.054434 TCCGGACTGTGGATTGATTTCAT 60.054 43.478 0.00 0.00 0.00 2.57
346 347 4.163268 TCCGGACTGTGGATTGATTTCATA 59.837 41.667 0.00 0.00 0.00 2.15
347 348 4.881273 CCGGACTGTGGATTGATTTCATAA 59.119 41.667 0.00 0.00 0.00 1.90
348 349 5.356751 CCGGACTGTGGATTGATTTCATAAA 59.643 40.000 0.00 0.00 0.00 1.40
349 350 6.127758 CCGGACTGTGGATTGATTTCATAAAA 60.128 38.462 0.00 0.00 0.00 1.52
350 351 7.312154 CGGACTGTGGATTGATTTCATAAAAA 58.688 34.615 0.00 0.00 0.00 1.94
351 352 7.975616 CGGACTGTGGATTGATTTCATAAAAAT 59.024 33.333 0.00 0.00 0.00 1.82
352 353 9.090692 GGACTGTGGATTGATTTCATAAAAATG 57.909 33.333 0.00 0.00 0.00 2.32
353 354 8.483307 ACTGTGGATTGATTTCATAAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
354 355 8.095792 ACTGTGGATTGATTTCATAAAAATGCA 58.904 29.630 0.00 0.00 0.00 3.96
355 356 8.481974 TGTGGATTGATTTCATAAAAATGCAG 57.518 30.769 0.00 0.00 0.00 4.41
356 357 7.549842 TGTGGATTGATTTCATAAAAATGCAGG 59.450 33.333 0.00 0.00 0.00 4.85
357 358 7.011669 GTGGATTGATTTCATAAAAATGCAGGG 59.988 37.037 0.00 0.00 0.00 4.45
358 359 6.484308 GGATTGATTTCATAAAAATGCAGGGG 59.516 38.462 0.00 0.00 0.00 4.79
359 360 4.768583 TGATTTCATAAAAATGCAGGGGC 58.231 39.130 0.00 0.00 41.68 5.80
360 361 4.470664 TGATTTCATAAAAATGCAGGGGCT 59.529 37.500 0.00 0.00 41.91 5.19
361 362 4.906747 TTTCATAAAAATGCAGGGGCTT 57.093 36.364 0.00 0.00 41.91 4.35
362 363 4.906747 TTCATAAAAATGCAGGGGCTTT 57.093 36.364 0.00 0.00 41.91 3.51
363 364 4.906747 TCATAAAAATGCAGGGGCTTTT 57.093 36.364 0.00 0.00 45.89 2.27
382 383 2.270275 TTTGCAAAACTGTGTGACGG 57.730 45.000 10.02 0.00 0.00 4.79
383 384 1.454201 TTGCAAAACTGTGTGACGGA 58.546 45.000 0.00 0.00 0.00 4.69
384 385 0.730265 TGCAAAACTGTGTGACGGAC 59.270 50.000 0.00 0.00 0.00 4.79
385 386 0.315869 GCAAAACTGTGTGACGGACG 60.316 55.000 0.00 0.00 0.00 4.79
386 387 0.303493 CAAAACTGTGTGACGGACGG 59.697 55.000 0.00 0.00 0.00 4.79
387 388 0.176219 AAAACTGTGTGACGGACGGA 59.824 50.000 0.00 0.00 0.00 4.69
388 389 0.529119 AAACTGTGTGACGGACGGAC 60.529 55.000 0.00 0.00 0.00 4.79
389 390 1.669049 AACTGTGTGACGGACGGACA 61.669 55.000 0.00 0.00 0.00 4.02
390 391 1.066752 CTGTGTGACGGACGGACAA 59.933 57.895 0.00 0.00 0.00 3.18
391 392 0.528901 CTGTGTGACGGACGGACAAA 60.529 55.000 0.00 0.00 0.00 2.83
392 393 0.108281 TGTGTGACGGACGGACAAAA 60.108 50.000 0.00 0.00 0.00 2.44
393 394 1.008329 GTGTGACGGACGGACAAAAA 58.992 50.000 0.00 0.00 0.00 1.94
394 395 1.008329 TGTGACGGACGGACAAAAAC 58.992 50.000 0.00 0.00 0.00 2.43
395 396 0.305617 GTGACGGACGGACAAAAACC 59.694 55.000 0.00 0.00 0.00 3.27
396 397 0.814812 TGACGGACGGACAAAAACCC 60.815 55.000 0.00 0.00 0.00 4.11
397 398 0.533531 GACGGACGGACAAAAACCCT 60.534 55.000 0.00 0.00 0.00 4.34
398 399 0.758123 ACGGACGGACAAAAACCCTA 59.242 50.000 0.00 0.00 0.00 3.53
399 400 1.150827 CGGACGGACAAAAACCCTAC 58.849 55.000 0.00 0.00 0.00 3.18
400 401 1.540797 CGGACGGACAAAAACCCTACA 60.541 52.381 0.00 0.00 0.00 2.74
401 402 2.786777 GGACGGACAAAAACCCTACAT 58.213 47.619 0.00 0.00 0.00 2.29
402 403 3.617045 CGGACGGACAAAAACCCTACATA 60.617 47.826 0.00 0.00 0.00 2.29
403 404 3.686241 GGACGGACAAAAACCCTACATAC 59.314 47.826 0.00 0.00 0.00 2.39
404 405 4.564199 GGACGGACAAAAACCCTACATACT 60.564 45.833 0.00 0.00 0.00 2.12
405 406 4.976864 ACGGACAAAAACCCTACATACTT 58.023 39.130 0.00 0.00 0.00 2.24
406 407 5.379187 ACGGACAAAAACCCTACATACTTT 58.621 37.500 0.00 0.00 0.00 2.66
407 408 6.532826 ACGGACAAAAACCCTACATACTTTA 58.467 36.000 0.00 0.00 0.00 1.85
408 409 7.170277 ACGGACAAAAACCCTACATACTTTAT 58.830 34.615 0.00 0.00 0.00 1.40
409 410 7.666804 ACGGACAAAAACCCTACATACTTTATT 59.333 33.333 0.00 0.00 0.00 1.40
410 411 9.165035 CGGACAAAAACCCTACATACTTTATTA 57.835 33.333 0.00 0.00 0.00 0.98
433 434 5.690997 TTAGGTAGAGATATGCACACTCG 57.309 43.478 0.00 0.00 36.03 4.18
434 435 3.556999 AGGTAGAGATATGCACACTCGT 58.443 45.455 0.00 0.00 36.03 4.18
435 436 3.316588 AGGTAGAGATATGCACACTCGTG 59.683 47.826 0.00 0.00 46.56 4.35
499 501 1.612991 CGTCCATCCAATCCACCACAA 60.613 52.381 0.00 0.00 0.00 3.33
502 504 1.820519 CCATCCAATCCACCACAACAG 59.179 52.381 0.00 0.00 0.00 3.16
674 3335 0.035458 AGTTGTTCCTTCTCCTGCCG 59.965 55.000 0.00 0.00 0.00 5.69
939 3618 2.437716 CCCACTTGCGGCGGTATT 60.438 61.111 9.78 0.00 0.00 1.89
941 3620 1.433837 CCCACTTGCGGCGGTATTAC 61.434 60.000 9.78 0.00 0.00 1.89
942 3621 0.461339 CCACTTGCGGCGGTATTACT 60.461 55.000 9.78 0.00 0.00 2.24
944 3623 0.248289 ACTTGCGGCGGTATTACTGT 59.752 50.000 9.78 0.00 0.00 3.55
945 3624 1.338389 ACTTGCGGCGGTATTACTGTT 60.338 47.619 9.78 0.00 0.00 3.16
946 3625 1.062002 CTTGCGGCGGTATTACTGTTG 59.938 52.381 9.78 0.00 0.00 3.33
947 3626 1.350665 GCGGCGGTATTACTGTTGC 59.649 57.895 9.78 5.28 0.00 4.17
948 3627 1.634225 CGGCGGTATTACTGTTGCG 59.366 57.895 0.00 0.00 0.00 4.85
950 3629 1.350665 GCGGTATTACTGTTGCGCC 59.649 57.895 4.18 0.00 0.00 6.53
951 3630 1.363145 GCGGTATTACTGTTGCGCCA 61.363 55.000 4.18 0.00 0.00 5.69
952 3631 0.372334 CGGTATTACTGTTGCGCCAC 59.628 55.000 4.18 4.28 0.00 5.01
953 3632 0.730840 GGTATTACTGTTGCGCCACC 59.269 55.000 9.38 0.00 0.00 4.61
1071 3756 3.737172 ATGTTGCAGCGAACGGCC 61.737 61.111 0.00 0.00 45.17 6.13
1256 3941 2.068277 GAGCATCAGGATTTGGCGGC 62.068 60.000 0.00 0.00 33.17 6.53
1292 3977 2.685380 CAGGCTTCTCCCTCCGGT 60.685 66.667 0.00 0.00 31.24 5.28
1615 4300 4.899239 CGAGGCCATGAGGTCGGC 62.899 72.222 5.01 0.00 46.92 5.54
1662 4347 1.374758 GCGTTGCTGCTGGAGTAGT 60.375 57.895 0.00 0.00 0.00 2.73
1663 4348 0.108804 GCGTTGCTGCTGGAGTAGTA 60.109 55.000 0.00 0.00 0.00 1.82
1664 4349 1.630148 CGTTGCTGCTGGAGTAGTAC 58.370 55.000 0.00 0.00 0.00 2.73
1665 4350 1.202582 CGTTGCTGCTGGAGTAGTACT 59.797 52.381 1.37 1.37 0.00 2.73
1666 4351 2.732597 CGTTGCTGCTGGAGTAGTACTC 60.733 54.545 20.24 20.24 44.32 2.59
1703 4388 8.801715 AACTAAAACTACGACGAGTAATTTGA 57.198 30.769 0.00 0.00 35.28 2.69
1704 4389 8.801715 ACTAAAACTACGACGAGTAATTTGAA 57.198 30.769 0.00 0.00 35.28 2.69
1705 4390 9.248291 ACTAAAACTACGACGAGTAATTTGAAA 57.752 29.630 0.00 0.00 35.28 2.69
1706 4391 9.508495 CTAAAACTACGACGAGTAATTTGAAAC 57.492 33.333 0.00 0.00 35.28 2.78
1707 4392 5.736040 ACTACGACGAGTAATTTGAAACG 57.264 39.130 0.00 0.00 34.45 3.60
1708 4393 4.618489 ACTACGACGAGTAATTTGAAACGG 59.382 41.667 0.00 0.00 34.45 4.44
1709 4394 3.641648 ACGACGAGTAATTTGAAACGGA 58.358 40.909 0.00 0.00 0.00 4.69
1710 4395 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
1711 4396 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
1712 4397 3.992427 GACGAGTAATTTGAAACGGAGGT 59.008 43.478 0.00 0.00 0.00 3.85
1713 4398 5.138125 ACGAGTAATTTGAAACGGAGGTA 57.862 39.130 0.00 0.00 0.00 3.08
1714 4399 5.166398 ACGAGTAATTTGAAACGGAGGTAG 58.834 41.667 0.00 0.00 0.00 3.18
1715 4400 4.032558 CGAGTAATTTGAAACGGAGGTAGC 59.967 45.833 0.00 0.00 0.00 3.58
1716 4401 5.161943 AGTAATTTGAAACGGAGGTAGCT 57.838 39.130 0.00 0.00 0.00 3.32
1717 4402 6.290294 AGTAATTTGAAACGGAGGTAGCTA 57.710 37.500 0.00 0.00 0.00 3.32
1718 4403 6.704310 AGTAATTTGAAACGGAGGTAGCTAA 58.296 36.000 0.00 0.00 0.00 3.09
1719 4404 6.817140 AGTAATTTGAAACGGAGGTAGCTAAG 59.183 38.462 0.00 0.00 0.00 2.18
1720 4405 2.667473 TGAAACGGAGGTAGCTAAGC 57.333 50.000 0.00 0.00 0.00 3.09
1721 4406 2.176889 TGAAACGGAGGTAGCTAAGCT 58.823 47.619 0.00 0.00 43.41 3.74
1722 4407 2.094182 TGAAACGGAGGTAGCTAAGCTG 60.094 50.000 0.00 0.00 40.10 4.24
1723 4408 0.175989 AACGGAGGTAGCTAAGCTGC 59.824 55.000 0.00 0.00 40.10 5.25
1724 4409 0.970937 ACGGAGGTAGCTAAGCTGCA 60.971 55.000 1.02 0.00 43.64 4.41
1725 4410 0.390860 CGGAGGTAGCTAAGCTGCAT 59.609 55.000 1.02 0.00 43.64 3.96
1726 4411 1.202580 CGGAGGTAGCTAAGCTGCATT 60.203 52.381 1.02 0.00 43.64 3.56
1727 4412 2.743183 CGGAGGTAGCTAAGCTGCATTT 60.743 50.000 1.02 0.00 43.64 2.32
1728 4413 3.282885 GGAGGTAGCTAAGCTGCATTTT 58.717 45.455 1.02 0.00 42.86 1.82
1729 4414 3.696548 GGAGGTAGCTAAGCTGCATTTTT 59.303 43.478 1.02 0.00 42.86 1.94
1730 4415 4.439289 GGAGGTAGCTAAGCTGCATTTTTG 60.439 45.833 1.02 0.00 42.86 2.44
1731 4416 3.445096 AGGTAGCTAAGCTGCATTTTTGG 59.555 43.478 1.02 0.00 42.86 3.28
1732 4417 3.443681 GGTAGCTAAGCTGCATTTTTGGA 59.556 43.478 1.02 0.00 42.86 3.53
1733 4418 4.098501 GGTAGCTAAGCTGCATTTTTGGAT 59.901 41.667 1.02 0.00 42.86 3.41
1734 4419 4.382345 AGCTAAGCTGCATTTTTGGATC 57.618 40.909 1.02 0.00 37.57 3.36
1735 4420 4.021916 AGCTAAGCTGCATTTTTGGATCT 58.978 39.130 1.02 0.00 37.57 2.75
1736 4421 4.465305 AGCTAAGCTGCATTTTTGGATCTT 59.535 37.500 1.02 0.00 37.57 2.40
1737 4422 4.802563 GCTAAGCTGCATTTTTGGATCTTC 59.197 41.667 1.02 0.00 0.00 2.87
1738 4423 4.877378 AAGCTGCATTTTTGGATCTTCA 57.123 36.364 1.02 0.00 0.00 3.02
1739 4424 5.416271 AAGCTGCATTTTTGGATCTTCAT 57.584 34.783 1.02 0.00 0.00 2.57
1740 4425 5.416271 AGCTGCATTTTTGGATCTTCATT 57.584 34.783 1.02 0.00 0.00 2.57
1741 4426 5.801380 AGCTGCATTTTTGGATCTTCATTT 58.199 33.333 1.02 0.00 0.00 2.32
1742 4427 6.235664 AGCTGCATTTTTGGATCTTCATTTT 58.764 32.000 1.02 0.00 0.00 1.82
1743 4428 6.370718 AGCTGCATTTTTGGATCTTCATTTTC 59.629 34.615 1.02 0.00 0.00 2.29
1744 4429 6.370718 GCTGCATTTTTGGATCTTCATTTTCT 59.629 34.615 0.00 0.00 0.00 2.52
1745 4430 7.094933 GCTGCATTTTTGGATCTTCATTTTCTT 60.095 33.333 0.00 0.00 0.00 2.52
1746 4431 8.090250 TGCATTTTTGGATCTTCATTTTCTTG 57.910 30.769 0.00 0.00 0.00 3.02
1747 4432 7.716123 TGCATTTTTGGATCTTCATTTTCTTGT 59.284 29.630 0.00 0.00 0.00 3.16
1748 4433 8.562052 GCATTTTTGGATCTTCATTTTCTTGTT 58.438 29.630 0.00 0.00 0.00 2.83
1751 4436 8.876275 TTTTGGATCTTCATTTTCTTGTTCTG 57.124 30.769 0.00 0.00 0.00 3.02
1752 4437 7.587037 TTGGATCTTCATTTTCTTGTTCTGT 57.413 32.000 0.00 0.00 0.00 3.41
1753 4438 7.587037 TGGATCTTCATTTTCTTGTTCTGTT 57.413 32.000 0.00 0.00 0.00 3.16
1754 4439 8.010733 TGGATCTTCATTTTCTTGTTCTGTTT 57.989 30.769 0.00 0.00 0.00 2.83
1755 4440 9.130661 TGGATCTTCATTTTCTTGTTCTGTTTA 57.869 29.630 0.00 0.00 0.00 2.01
1761 4446 8.795786 TCATTTTCTTGTTCTGTTTATTTCCG 57.204 30.769 0.00 0.00 0.00 4.30
1762 4447 8.625651 TCATTTTCTTGTTCTGTTTATTTCCGA 58.374 29.630 0.00 0.00 0.00 4.55
1763 4448 8.905702 CATTTTCTTGTTCTGTTTATTTCCGAG 58.094 33.333 0.00 0.00 0.00 4.63
1764 4449 7.562454 TTTCTTGTTCTGTTTATTTCCGAGT 57.438 32.000 0.00 0.00 0.00 4.18
1765 4450 6.539649 TCTTGTTCTGTTTATTTCCGAGTG 57.460 37.500 0.00 0.00 0.00 3.51
1766 4451 6.285224 TCTTGTTCTGTTTATTTCCGAGTGA 58.715 36.000 0.00 0.00 0.00 3.41
1767 4452 6.934645 TCTTGTTCTGTTTATTTCCGAGTGAT 59.065 34.615 0.00 0.00 0.00 3.06
1768 4453 7.444183 TCTTGTTCTGTTTATTTCCGAGTGATT 59.556 33.333 0.00 0.00 0.00 2.57
1769 4454 7.504924 TGTTCTGTTTATTTCCGAGTGATTT 57.495 32.000 0.00 0.00 0.00 2.17
1770 4455 7.936584 TGTTCTGTTTATTTCCGAGTGATTTT 58.063 30.769 0.00 0.00 0.00 1.82
1771 4456 7.860373 TGTTCTGTTTATTTCCGAGTGATTTTG 59.140 33.333 0.00 0.00 0.00 2.44
1772 4457 6.378582 TCTGTTTATTTCCGAGTGATTTTGC 58.621 36.000 0.00 0.00 0.00 3.68
1773 4458 6.206634 TCTGTTTATTTCCGAGTGATTTTGCT 59.793 34.615 0.00 0.00 0.00 3.91
1774 4459 6.744112 TGTTTATTTCCGAGTGATTTTGCTT 58.256 32.000 0.00 0.00 0.00 3.91
1775 4460 6.640499 TGTTTATTTCCGAGTGATTTTGCTTG 59.360 34.615 0.00 0.00 0.00 4.01
1776 4461 6.567687 TTATTTCCGAGTGATTTTGCTTGA 57.432 33.333 0.00 0.00 0.00 3.02
1777 4462 5.649782 ATTTCCGAGTGATTTTGCTTGAT 57.350 34.783 0.00 0.00 0.00 2.57
1778 4463 5.452078 TTTCCGAGTGATTTTGCTTGATT 57.548 34.783 0.00 0.00 0.00 2.57
1779 4464 4.424061 TCCGAGTGATTTTGCTTGATTG 57.576 40.909 0.00 0.00 0.00 2.67
1780 4465 2.919229 CCGAGTGATTTTGCTTGATTGC 59.081 45.455 0.00 0.00 0.00 3.56
1781 4466 2.591148 CGAGTGATTTTGCTTGATTGCG 59.409 45.455 0.00 0.00 35.36 4.85
1782 4467 3.667695 CGAGTGATTTTGCTTGATTGCGA 60.668 43.478 0.00 0.00 35.36 5.10
1783 4468 4.229096 GAGTGATTTTGCTTGATTGCGAA 58.771 39.130 0.00 0.00 34.82 4.70
1784 4469 4.619973 AGTGATTTTGCTTGATTGCGAAA 58.380 34.783 4.66 4.66 46.41 3.46
1785 4470 4.682860 AGTGATTTTGCTTGATTGCGAAAG 59.317 37.500 7.75 0.00 45.82 2.62
1786 4471 4.445385 GTGATTTTGCTTGATTGCGAAAGT 59.555 37.500 7.75 0.00 45.82 2.66
1787 4472 5.629020 GTGATTTTGCTTGATTGCGAAAGTA 59.371 36.000 7.75 0.00 45.82 2.24
1788 4473 5.858049 TGATTTTGCTTGATTGCGAAAGTAG 59.142 36.000 7.75 0.00 45.82 2.57
1789 4474 3.829886 TTGCTTGATTGCGAAAGTAGG 57.170 42.857 0.00 0.00 35.36 3.18
1790 4475 3.052455 TGCTTGATTGCGAAAGTAGGA 57.948 42.857 0.00 0.00 35.36 2.94
1791 4476 3.002791 TGCTTGATTGCGAAAGTAGGAG 58.997 45.455 0.00 0.00 35.36 3.69
1792 4477 2.352960 GCTTGATTGCGAAAGTAGGAGG 59.647 50.000 0.00 0.00 0.00 4.30
1793 4478 3.600388 CTTGATTGCGAAAGTAGGAGGT 58.400 45.455 0.00 0.00 0.00 3.85
1794 4479 4.755411 CTTGATTGCGAAAGTAGGAGGTA 58.245 43.478 0.00 0.00 0.00 3.08
1795 4480 4.386867 TGATTGCGAAAGTAGGAGGTAG 57.613 45.455 0.00 0.00 0.00 3.18
1796 4481 4.021229 TGATTGCGAAAGTAGGAGGTAGA 58.979 43.478 0.00 0.00 0.00 2.59
1797 4482 4.649674 TGATTGCGAAAGTAGGAGGTAGAT 59.350 41.667 0.00 0.00 0.00 1.98
1798 4483 4.386867 TTGCGAAAGTAGGAGGTAGATG 57.613 45.455 0.00 0.00 0.00 2.90
1799 4484 3.362706 TGCGAAAGTAGGAGGTAGATGT 58.637 45.455 0.00 0.00 0.00 3.06
1800 4485 4.529897 TGCGAAAGTAGGAGGTAGATGTA 58.470 43.478 0.00 0.00 0.00 2.29
1801 4486 4.579340 TGCGAAAGTAGGAGGTAGATGTAG 59.421 45.833 0.00 0.00 0.00 2.74
1802 4487 4.579753 GCGAAAGTAGGAGGTAGATGTAGT 59.420 45.833 0.00 0.00 0.00 2.73
1803 4488 5.067544 GCGAAAGTAGGAGGTAGATGTAGTT 59.932 44.000 0.00 0.00 0.00 2.24
1804 4489 6.405619 GCGAAAGTAGGAGGTAGATGTAGTTT 60.406 42.308 0.00 0.00 0.00 2.66
1805 4490 7.545489 CGAAAGTAGGAGGTAGATGTAGTTTT 58.455 38.462 0.00 0.00 0.00 2.43
1806 4491 7.701501 CGAAAGTAGGAGGTAGATGTAGTTTTC 59.298 40.741 0.00 0.00 0.00 2.29
1807 4492 8.431910 AAAGTAGGAGGTAGATGTAGTTTTCA 57.568 34.615 0.00 0.00 0.00 2.69
1808 4493 7.648039 AGTAGGAGGTAGATGTAGTTTTCAG 57.352 40.000 0.00 0.00 0.00 3.02
1809 4494 7.411808 AGTAGGAGGTAGATGTAGTTTTCAGA 58.588 38.462 0.00 0.00 0.00 3.27
1810 4495 8.062536 AGTAGGAGGTAGATGTAGTTTTCAGAT 58.937 37.037 0.00 0.00 0.00 2.90
1811 4496 7.354751 AGGAGGTAGATGTAGTTTTCAGATC 57.645 40.000 0.00 0.00 0.00 2.75
1812 4497 7.129425 AGGAGGTAGATGTAGTTTTCAGATCT 58.871 38.462 0.00 0.00 0.00 2.75
1813 4498 7.621683 AGGAGGTAGATGTAGTTTTCAGATCTT 59.378 37.037 0.00 0.00 0.00 2.40
1814 4499 8.915036 GGAGGTAGATGTAGTTTTCAGATCTTA 58.085 37.037 0.00 0.00 0.00 2.10
1823 4508 9.151471 TGTAGTTTTCAGATCTTATAGTTGTGC 57.849 33.333 0.00 0.00 0.00 4.57
1824 4509 9.151471 GTAGTTTTCAGATCTTATAGTTGTGCA 57.849 33.333 0.00 0.00 0.00 4.57
1825 4510 8.261492 AGTTTTCAGATCTTATAGTTGTGCAG 57.739 34.615 0.00 0.00 0.00 4.41
1826 4511 8.097038 AGTTTTCAGATCTTATAGTTGTGCAGA 58.903 33.333 0.00 0.00 0.00 4.26
1827 4512 8.887717 GTTTTCAGATCTTATAGTTGTGCAGAT 58.112 33.333 0.00 0.00 0.00 2.90
1828 4513 9.453572 TTTTCAGATCTTATAGTTGTGCAGATT 57.546 29.630 0.00 0.00 0.00 2.40
1829 4514 8.654230 TTCAGATCTTATAGTTGTGCAGATTC 57.346 34.615 0.00 0.00 0.00 2.52
1830 4515 7.785033 TCAGATCTTATAGTTGTGCAGATTCA 58.215 34.615 0.00 0.00 0.00 2.57
1831 4516 7.924947 TCAGATCTTATAGTTGTGCAGATTCAG 59.075 37.037 0.00 0.00 0.00 3.02
1832 4517 7.924947 CAGATCTTATAGTTGTGCAGATTCAGA 59.075 37.037 0.00 0.00 0.00 3.27
1833 4518 8.649591 AGATCTTATAGTTGTGCAGATTCAGAT 58.350 33.333 0.00 0.00 0.00 2.90
1834 4519 9.270640 GATCTTATAGTTGTGCAGATTCAGATT 57.729 33.333 0.00 0.00 0.00 2.40
1835 4520 9.624373 ATCTTATAGTTGTGCAGATTCAGATTT 57.376 29.630 0.00 0.00 0.00 2.17
1836 4521 8.886719 TCTTATAGTTGTGCAGATTCAGATTTG 58.113 33.333 0.00 0.00 0.00 2.32
1837 4522 8.565896 TTATAGTTGTGCAGATTCAGATTTGT 57.434 30.769 0.00 0.00 0.00 2.83
1838 4523 5.117355 AGTTGTGCAGATTCAGATTTGTG 57.883 39.130 0.00 0.00 0.00 3.33
1839 4524 4.022589 AGTTGTGCAGATTCAGATTTGTGG 60.023 41.667 0.00 0.00 0.00 4.17
1840 4525 2.821378 TGTGCAGATTCAGATTTGTGGG 59.179 45.455 0.00 0.00 0.00 4.61
1841 4526 3.084039 GTGCAGATTCAGATTTGTGGGA 58.916 45.455 0.00 0.00 0.00 4.37
1842 4527 3.128242 GTGCAGATTCAGATTTGTGGGAG 59.872 47.826 0.00 0.00 0.00 4.30
1843 4528 3.009363 TGCAGATTCAGATTTGTGGGAGA 59.991 43.478 0.00 0.00 0.00 3.71
1844 4529 3.626670 GCAGATTCAGATTTGTGGGAGAG 59.373 47.826 0.00 0.00 0.00 3.20
1845 4530 4.841422 CAGATTCAGATTTGTGGGAGAGT 58.159 43.478 0.00 0.00 0.00 3.24
1846 4531 4.634883 CAGATTCAGATTTGTGGGAGAGTG 59.365 45.833 0.00 0.00 0.00 3.51
1847 4532 4.533707 AGATTCAGATTTGTGGGAGAGTGA 59.466 41.667 0.00 0.00 0.00 3.41
1848 4533 4.916041 TTCAGATTTGTGGGAGAGTGAT 57.084 40.909 0.00 0.00 0.00 3.06
1849 4534 4.212143 TCAGATTTGTGGGAGAGTGATG 57.788 45.455 0.00 0.00 0.00 3.07
1850 4535 3.840078 TCAGATTTGTGGGAGAGTGATGA 59.160 43.478 0.00 0.00 0.00 2.92
1851 4536 4.472470 TCAGATTTGTGGGAGAGTGATGAT 59.528 41.667 0.00 0.00 0.00 2.45
1852 4537 5.045359 TCAGATTTGTGGGAGAGTGATGATT 60.045 40.000 0.00 0.00 0.00 2.57
1853 4538 5.066117 CAGATTTGTGGGAGAGTGATGATTG 59.934 44.000 0.00 0.00 0.00 2.67
1854 4539 4.639078 TTTGTGGGAGAGTGATGATTGA 57.361 40.909 0.00 0.00 0.00 2.57
1855 4540 4.849813 TTGTGGGAGAGTGATGATTGAT 57.150 40.909 0.00 0.00 0.00 2.57
1856 4541 4.849813 TGTGGGAGAGTGATGATTGATT 57.150 40.909 0.00 0.00 0.00 2.57
1857 4542 4.520179 TGTGGGAGAGTGATGATTGATTG 58.480 43.478 0.00 0.00 0.00 2.67
1858 4543 4.019051 TGTGGGAGAGTGATGATTGATTGT 60.019 41.667 0.00 0.00 0.00 2.71
1859 4544 4.946157 GTGGGAGAGTGATGATTGATTGTT 59.054 41.667 0.00 0.00 0.00 2.83
1860 4545 5.416952 GTGGGAGAGTGATGATTGATTGTTT 59.583 40.000 0.00 0.00 0.00 2.83
1861 4546 5.649395 TGGGAGAGTGATGATTGATTGTTTC 59.351 40.000 0.00 0.00 0.00 2.78
1862 4547 5.884792 GGGAGAGTGATGATTGATTGTTTCT 59.115 40.000 0.00 0.00 0.00 2.52
1863 4548 6.183360 GGGAGAGTGATGATTGATTGTTTCTG 60.183 42.308 0.00 0.00 0.00 3.02
1864 4549 6.373774 GGAGAGTGATGATTGATTGTTTCTGT 59.626 38.462 0.00 0.00 0.00 3.41
1865 4550 7.094463 GGAGAGTGATGATTGATTGTTTCTGTT 60.094 37.037 0.00 0.00 0.00 3.16
1866 4551 8.853077 AGAGTGATGATTGATTGTTTCTGTTA 57.147 30.769 0.00 0.00 0.00 2.41
1867 4552 8.944029 AGAGTGATGATTGATTGTTTCTGTTAG 58.056 33.333 0.00 0.00 0.00 2.34
1868 4553 8.627208 AGTGATGATTGATTGTTTCTGTTAGT 57.373 30.769 0.00 0.00 0.00 2.24
1869 4554 9.725019 AGTGATGATTGATTGTTTCTGTTAGTA 57.275 29.630 0.00 0.00 0.00 1.82
1914 4599 7.886629 AATTGTAAATCCATGCTATGTCTGT 57.113 32.000 0.00 0.00 0.00 3.41
1915 4600 6.682423 TTGTAAATCCATGCTATGTCTGTG 57.318 37.500 0.00 0.00 0.00 3.66
1916 4601 5.125356 TGTAAATCCATGCTATGTCTGTGG 58.875 41.667 0.00 0.00 0.00 4.17
1917 4602 3.939740 AATCCATGCTATGTCTGTGGT 57.060 42.857 0.00 0.00 0.00 4.16
1918 4603 3.939740 ATCCATGCTATGTCTGTGGTT 57.060 42.857 0.00 0.00 0.00 3.67
1919 4604 5.372343 AATCCATGCTATGTCTGTGGTTA 57.628 39.130 0.00 0.00 0.00 2.85
1920 4605 5.573380 ATCCATGCTATGTCTGTGGTTAT 57.427 39.130 0.00 0.00 0.00 1.89
1921 4606 4.707105 TCCATGCTATGTCTGTGGTTATG 58.293 43.478 0.00 0.00 0.00 1.90
1922 4607 4.164030 TCCATGCTATGTCTGTGGTTATGT 59.836 41.667 0.00 0.00 0.00 2.29
1923 4608 4.883585 CCATGCTATGTCTGTGGTTATGTT 59.116 41.667 0.00 0.00 0.00 2.71
1924 4609 5.357878 CCATGCTATGTCTGTGGTTATGTTT 59.642 40.000 0.00 0.00 0.00 2.83
1925 4610 6.127647 CCATGCTATGTCTGTGGTTATGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
1926 4611 6.252967 TGCTATGTCTGTGGTTATGTTTTG 57.747 37.500 0.00 0.00 0.00 2.44
1927 4612 5.182950 TGCTATGTCTGTGGTTATGTTTTGG 59.817 40.000 0.00 0.00 0.00 3.28
1928 4613 4.519540 ATGTCTGTGGTTATGTTTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
1929 4614 3.291584 TGTCTGTGGTTATGTTTTGGCA 58.708 40.909 0.00 0.00 0.00 4.92
1930 4615 3.701542 TGTCTGTGGTTATGTTTTGGCAA 59.298 39.130 0.00 0.00 0.00 4.52
1931 4616 4.048504 GTCTGTGGTTATGTTTTGGCAAC 58.951 43.478 0.00 0.00 0.00 4.17
1932 4617 3.068873 TCTGTGGTTATGTTTTGGCAACC 59.931 43.478 0.00 0.00 40.72 3.77
1933 4618 2.223829 TGTGGTTATGTTTTGGCAACCG 60.224 45.455 0.00 0.00 42.77 4.44
1934 4619 1.269831 TGGTTATGTTTTGGCAACCGC 60.270 47.619 0.00 0.00 42.77 5.68
1944 4629 4.390048 GCAACCGCCTCCTTTGTA 57.610 55.556 0.00 0.00 0.00 2.41
1945 4630 2.636299 GCAACCGCCTCCTTTGTAA 58.364 52.632 0.00 0.00 0.00 2.41
1946 4631 0.240145 GCAACCGCCTCCTTTGTAAC 59.760 55.000 0.00 0.00 0.00 2.50
1947 4632 0.879090 CAACCGCCTCCTTTGTAACC 59.121 55.000 0.00 0.00 0.00 2.85
1948 4633 0.604511 AACCGCCTCCTTTGTAACCG 60.605 55.000 0.00 0.00 0.00 4.44
1949 4634 2.396157 CCGCCTCCTTTGTAACCGC 61.396 63.158 0.00 0.00 0.00 5.68
1950 4635 2.396157 CGCCTCCTTTGTAACCGCC 61.396 63.158 0.00 0.00 0.00 6.13
1951 4636 1.002502 GCCTCCTTTGTAACCGCCT 60.003 57.895 0.00 0.00 0.00 5.52
1952 4637 0.608308 GCCTCCTTTGTAACCGCCTT 60.608 55.000 0.00 0.00 0.00 4.35
1953 4638 1.165270 CCTCCTTTGTAACCGCCTTG 58.835 55.000 0.00 0.00 0.00 3.61
1954 4639 1.544759 CCTCCTTTGTAACCGCCTTGT 60.545 52.381 0.00 0.00 0.00 3.16
1955 4640 2.289819 CCTCCTTTGTAACCGCCTTGTA 60.290 50.000 0.00 0.00 0.00 2.41
1956 4641 3.404899 CTCCTTTGTAACCGCCTTGTAA 58.595 45.455 0.00 0.00 0.00 2.41
1957 4642 4.007659 CTCCTTTGTAACCGCCTTGTAAT 58.992 43.478 0.00 0.00 0.00 1.89
1958 4643 3.754323 TCCTTTGTAACCGCCTTGTAATG 59.246 43.478 0.00 0.00 0.00 1.90
1959 4644 3.754323 CCTTTGTAACCGCCTTGTAATGA 59.246 43.478 0.00 0.00 0.00 2.57
1960 4645 4.142687 CCTTTGTAACCGCCTTGTAATGAG 60.143 45.833 0.00 0.00 0.00 2.90
1961 4646 2.980568 TGTAACCGCCTTGTAATGAGG 58.019 47.619 0.00 0.00 37.35 3.86
1962 4647 2.285977 GTAACCGCCTTGTAATGAGGG 58.714 52.381 0.00 0.00 34.75 4.30
1963 4648 0.696501 AACCGCCTTGTAATGAGGGT 59.303 50.000 0.00 0.00 34.75 4.34
1964 4649 1.575419 ACCGCCTTGTAATGAGGGTA 58.425 50.000 0.00 0.00 34.75 3.69
1965 4650 2.124411 ACCGCCTTGTAATGAGGGTAT 58.876 47.619 0.00 0.00 34.75 2.73
1966 4651 2.508300 ACCGCCTTGTAATGAGGGTATT 59.492 45.455 0.00 0.00 34.75 1.89
1967 4652 3.712733 ACCGCCTTGTAATGAGGGTATTA 59.287 43.478 0.00 0.00 34.75 0.98
1968 4653 4.164604 ACCGCCTTGTAATGAGGGTATTAA 59.835 41.667 0.00 0.00 34.75 1.40
1969 4654 5.163131 ACCGCCTTGTAATGAGGGTATTAAT 60.163 40.000 0.00 0.00 34.75 1.40
1970 4655 6.043474 ACCGCCTTGTAATGAGGGTATTAATA 59.957 38.462 0.00 0.00 34.75 0.98
1971 4656 6.370718 CCGCCTTGTAATGAGGGTATTAATAC 59.629 42.308 15.98 15.98 34.75 1.89
1986 4671 8.934023 GGTATTAATACCCCAATCTTCAATCA 57.066 34.615 27.84 0.00 45.62 2.57
1987 4672 9.362151 GGTATTAATACCCCAATCTTCAATCAA 57.638 33.333 27.84 0.00 45.62 2.57
1990 4675 5.796424 ATACCCCAATCTTCAATCAATGC 57.204 39.130 0.00 0.00 0.00 3.56
1991 4676 3.443052 ACCCCAATCTTCAATCAATGCA 58.557 40.909 0.00 0.00 0.00 3.96
1992 4677 3.839490 ACCCCAATCTTCAATCAATGCAA 59.161 39.130 0.00 0.00 0.00 4.08
1993 4678 4.186159 CCCCAATCTTCAATCAATGCAAC 58.814 43.478 0.00 0.00 0.00 4.17
1994 4679 4.322877 CCCCAATCTTCAATCAATGCAACA 60.323 41.667 0.00 0.00 0.00 3.33
1995 4680 5.239351 CCCAATCTTCAATCAATGCAACAA 58.761 37.500 0.00 0.00 0.00 2.83
1996 4681 5.878116 CCCAATCTTCAATCAATGCAACAAT 59.122 36.000 0.00 0.00 0.00 2.71
1997 4682 6.373216 CCCAATCTTCAATCAATGCAACAATT 59.627 34.615 0.00 0.00 0.00 2.32
1998 4683 7.240674 CCAATCTTCAATCAATGCAACAATTG 58.759 34.615 3.24 3.24 38.63 2.32
1999 4684 7.094975 CCAATCTTCAATCAATGCAACAATTGT 60.095 33.333 4.92 4.92 38.46 2.71
2000 4685 7.972832 ATCTTCAATCAATGCAACAATTGTT 57.027 28.000 18.13 18.13 38.46 2.83
2001 4686 7.410800 TCTTCAATCAATGCAACAATTGTTC 57.589 32.000 20.85 15.30 38.46 3.18
2002 4687 6.424509 TCTTCAATCAATGCAACAATTGTTCC 59.575 34.615 20.85 13.22 38.46 3.62
2003 4688 5.608449 TCAATCAATGCAACAATTGTTCCA 58.392 33.333 20.85 18.86 38.46 3.53
2004 4689 6.231951 TCAATCAATGCAACAATTGTTCCAT 58.768 32.000 19.84 19.84 37.99 3.41
2005 4690 6.369340 TCAATCAATGCAACAATTGTTCCATC 59.631 34.615 24.36 13.20 35.52 3.51
2006 4691 5.211174 TCAATGCAACAATTGTTCCATCA 57.789 34.783 24.36 17.42 35.52 3.07
2007 4692 5.795972 TCAATGCAACAATTGTTCCATCAT 58.204 33.333 24.36 18.57 35.52 2.45
2008 4693 6.231951 TCAATGCAACAATTGTTCCATCATT 58.768 32.000 24.36 22.00 35.52 2.57
2009 4694 6.711194 TCAATGCAACAATTGTTCCATCATTT 59.289 30.769 24.36 9.98 35.52 2.32
2010 4695 5.926214 TGCAACAATTGTTCCATCATTTG 57.074 34.783 20.85 8.63 35.83 2.32
2011 4696 4.213694 TGCAACAATTGTTCCATCATTTGC 59.786 37.500 20.85 17.86 35.83 3.68
2012 4697 4.453136 GCAACAATTGTTCCATCATTTGCT 59.547 37.500 20.85 0.00 35.83 3.91
2020 4705 3.449528 TCCATCATTTGCTCTCTCTCG 57.550 47.619 0.00 0.00 0.00 4.04
2024 4709 4.033817 CCATCATTTGCTCTCTCTCGTTTC 59.966 45.833 0.00 0.00 0.00 2.78
2025 4710 4.527509 TCATTTGCTCTCTCTCGTTTCT 57.472 40.909 0.00 0.00 0.00 2.52
2026 4711 5.644977 TCATTTGCTCTCTCTCGTTTCTA 57.355 39.130 0.00 0.00 0.00 2.10
2027 4712 5.403246 TCATTTGCTCTCTCTCGTTTCTAC 58.597 41.667 0.00 0.00 0.00 2.59
2028 4713 5.184096 TCATTTGCTCTCTCTCGTTTCTACT 59.816 40.000 0.00 0.00 0.00 2.57
2031 4716 4.799678 TGCTCTCTCTCGTTTCTACTTTG 58.200 43.478 0.00 0.00 0.00 2.77
2050 4735 3.965379 TGACACGTTATCAGCCCTTTA 57.035 42.857 0.00 0.00 0.00 1.85
2059 4749 2.354261 TCAGCCCTTTACCCTAACCT 57.646 50.000 0.00 0.00 0.00 3.50
2089 4779 3.754323 CGATTAGGCCACTAAACAAACCA 59.246 43.478 5.01 0.00 42.14 3.67
2122 4812 1.457303 GCTTCCGCGCACTAATATCAG 59.543 52.381 8.75 0.00 0.00 2.90
2124 4814 2.882927 TCCGCGCACTAATATCAGTT 57.117 45.000 8.75 0.00 0.00 3.16
2134 4824 3.949754 ACTAATATCAGTTCGTCACCGGA 59.050 43.478 9.46 0.00 33.95 5.14
2272 4962 2.743718 CGACAGTCCAAGCCCACT 59.256 61.111 0.00 0.00 0.00 4.00
2455 5151 5.535783 TGAGATGAAAGCACAAAATCCAGAA 59.464 36.000 0.00 0.00 0.00 3.02
2545 5248 6.817765 AAACGACAATCATACAAAGACCAT 57.182 33.333 0.00 0.00 0.00 3.55
2603 5321 3.064207 CCTGCACGAAGTAAGCACTAAA 58.936 45.455 0.00 0.00 41.61 1.85
2692 5412 4.777854 TCGGCCAGGCTCCTAGCA 62.778 66.667 12.43 0.00 44.75 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.938906 ACCGTAACTTCGATTTTAACATGTTAT 58.061 29.630 18.69 5.58 0.00 1.89
15 16 8.309163 ACCGTAACTTCGATTTTAACATGTTA 57.691 30.769 14.35 14.35 0.00 2.41
16 17 7.193377 ACCGTAACTTCGATTTTAACATGTT 57.807 32.000 16.68 16.68 0.00 2.71
17 18 6.790285 ACCGTAACTTCGATTTTAACATGT 57.210 33.333 0.00 0.00 0.00 3.21
18 19 9.596677 TTAAACCGTAACTTCGATTTTAACATG 57.403 29.630 0.00 0.00 29.05 3.21
20 21 9.994432 TTTTAAACCGTAACTTCGATTTTAACA 57.006 25.926 0.00 0.00 32.98 2.41
26 27 8.375465 CGTATCTTTTAAACCGTAACTTCGATT 58.625 33.333 0.00 0.00 0.00 3.34
27 28 7.542130 ACGTATCTTTTAAACCGTAACTTCGAT 59.458 33.333 0.00 0.00 0.00 3.59
28 29 6.861055 ACGTATCTTTTAAACCGTAACTTCGA 59.139 34.615 0.00 0.00 0.00 3.71
29 30 7.037797 ACGTATCTTTTAAACCGTAACTTCG 57.962 36.000 0.00 0.00 0.00 3.79
174 175 9.444600 ACTGTAACTCCGATTTAAACATGTTAT 57.555 29.630 12.39 1.27 0.00 1.89
175 176 8.836268 ACTGTAACTCCGATTTAAACATGTTA 57.164 30.769 12.39 0.00 0.00 2.41
176 177 7.739498 ACTGTAACTCCGATTTAAACATGTT 57.261 32.000 4.92 4.92 0.00 2.71
177 178 7.739498 AACTGTAACTCCGATTTAAACATGT 57.261 32.000 0.00 0.00 0.00 3.21
187 188 9.326413 CCATATCTTTTAAACTGTAACTCCGAT 57.674 33.333 0.00 0.00 0.00 4.18
188 189 8.533657 TCCATATCTTTTAAACTGTAACTCCGA 58.466 33.333 0.00 0.00 0.00 4.55
189 190 8.712285 TCCATATCTTTTAAACTGTAACTCCG 57.288 34.615 0.00 0.00 0.00 4.63
192 193 9.975218 ACCATCCATATCTTTTAAACTGTAACT 57.025 29.630 0.00 0.00 0.00 2.24
211 212 9.757227 CAAACAAATACTTTTCTAAACCATCCA 57.243 29.630 0.00 0.00 0.00 3.41
212 213 9.974980 TCAAACAAATACTTTTCTAAACCATCC 57.025 29.630 0.00 0.00 0.00 3.51
229 230 9.445786 CGCGGATTATATTTAAGTCAAACAAAT 57.554 29.630 0.00 0.00 0.00 2.32
230 231 7.911205 CCGCGGATTATATTTAAGTCAAACAAA 59.089 33.333 24.07 0.00 0.00 2.83
231 232 7.280428 TCCGCGGATTATATTTAAGTCAAACAA 59.720 33.333 27.28 0.00 0.00 2.83
232 233 6.762187 TCCGCGGATTATATTTAAGTCAAACA 59.238 34.615 27.28 0.00 0.00 2.83
233 234 7.181143 TCCGCGGATTATATTTAAGTCAAAC 57.819 36.000 27.28 0.00 0.00 2.93
234 235 7.094975 CCATCCGCGGATTATATTTAAGTCAAA 60.095 37.037 37.36 5.30 31.62 2.69
235 236 6.370442 CCATCCGCGGATTATATTTAAGTCAA 59.630 38.462 37.36 5.70 31.62 3.18
236 237 5.872617 CCATCCGCGGATTATATTTAAGTCA 59.127 40.000 37.36 6.15 31.62 3.41
237 238 6.103997 TCCATCCGCGGATTATATTTAAGTC 58.896 40.000 37.36 0.00 31.62 3.01
238 239 6.045072 TCCATCCGCGGATTATATTTAAGT 57.955 37.500 37.36 11.10 31.62 2.24
239 240 6.978343 TTCCATCCGCGGATTATATTTAAG 57.022 37.500 37.36 21.73 34.19 1.85
240 241 7.496591 GGTATTCCATCCGCGGATTATATTTAA 59.503 37.037 37.36 21.51 34.19 1.52
241 242 6.987992 GGTATTCCATCCGCGGATTATATTTA 59.012 38.462 37.36 20.12 34.19 1.40
242 243 5.820947 GGTATTCCATCCGCGGATTATATTT 59.179 40.000 37.36 21.09 34.19 1.40
243 244 5.130477 AGGTATTCCATCCGCGGATTATATT 59.870 40.000 37.36 22.09 34.19 1.28
244 245 4.654262 AGGTATTCCATCCGCGGATTATAT 59.346 41.667 37.36 28.10 34.19 0.86
245 246 4.028131 AGGTATTCCATCCGCGGATTATA 58.972 43.478 37.36 27.78 34.19 0.98
246 247 2.838202 AGGTATTCCATCCGCGGATTAT 59.162 45.455 37.36 28.74 34.19 1.28
247 248 2.253610 AGGTATTCCATCCGCGGATTA 58.746 47.619 37.36 25.11 34.19 1.75
248 249 1.056660 AGGTATTCCATCCGCGGATT 58.943 50.000 37.36 25.02 34.19 3.01
249 250 1.933021 TAGGTATTCCATCCGCGGAT 58.067 50.000 34.60 34.60 34.19 4.18
250 251 1.707106 TTAGGTATTCCATCCGCGGA 58.293 50.000 33.12 33.12 35.89 5.54
251 252 2.536761 TTTAGGTATTCCATCCGCGG 57.463 50.000 22.12 22.12 35.89 6.46
252 253 3.875134 ACTTTTTAGGTATTCCATCCGCG 59.125 43.478 0.00 0.00 35.89 6.46
253 254 5.830000 AACTTTTTAGGTATTCCATCCGC 57.170 39.130 0.00 0.00 35.89 5.54
254 255 7.012989 CCCTTAACTTTTTAGGTATTCCATCCG 59.987 40.741 0.00 0.00 35.89 4.18
255 256 7.837689 ACCCTTAACTTTTTAGGTATTCCATCC 59.162 37.037 0.00 0.00 35.89 3.51
256 257 8.818622 ACCCTTAACTTTTTAGGTATTCCATC 57.181 34.615 0.00 0.00 35.89 3.51
257 258 9.610104 AAACCCTTAACTTTTTAGGTATTCCAT 57.390 29.630 0.00 0.00 35.89 3.41
258 259 9.436866 AAAACCCTTAACTTTTTAGGTATTCCA 57.563 29.630 0.00 0.00 35.89 3.53
286 287 8.401709 ACCGAACCGTTATTTTACAGTTAAAAA 58.598 29.630 0.00 0.00 39.94 1.94
287 288 7.854916 CACCGAACCGTTATTTTACAGTTAAAA 59.145 33.333 0.00 0.00 40.63 1.52
288 289 7.011857 ACACCGAACCGTTATTTTACAGTTAAA 59.988 33.333 0.00 0.00 0.00 1.52
289 290 6.481644 ACACCGAACCGTTATTTTACAGTTAA 59.518 34.615 0.00 0.00 0.00 2.01
290 291 5.988561 ACACCGAACCGTTATTTTACAGTTA 59.011 36.000 0.00 0.00 0.00 2.24
291 292 4.815846 ACACCGAACCGTTATTTTACAGTT 59.184 37.500 0.00 0.00 0.00 3.16
292 293 4.379652 ACACCGAACCGTTATTTTACAGT 58.620 39.130 0.00 0.00 0.00 3.55
293 294 4.448395 TGACACCGAACCGTTATTTTACAG 59.552 41.667 0.00 0.00 0.00 2.74
294 295 4.210955 GTGACACCGAACCGTTATTTTACA 59.789 41.667 0.00 0.00 0.00 2.41
295 296 4.448732 AGTGACACCGAACCGTTATTTTAC 59.551 41.667 0.84 0.00 0.00 2.01
296 297 4.630111 AGTGACACCGAACCGTTATTTTA 58.370 39.130 0.84 0.00 0.00 1.52
297 298 3.469739 AGTGACACCGAACCGTTATTTT 58.530 40.909 0.84 0.00 0.00 1.82
298 299 3.116079 AGTGACACCGAACCGTTATTT 57.884 42.857 0.84 0.00 0.00 1.40
299 300 2.825861 AGTGACACCGAACCGTTATT 57.174 45.000 0.84 0.00 0.00 1.40
300 301 2.825861 AAGTGACACCGAACCGTTAT 57.174 45.000 0.84 0.00 0.00 1.89
301 302 3.724508 TTAAGTGACACCGAACCGTTA 57.275 42.857 0.84 0.00 0.00 3.18
302 303 2.600470 TTAAGTGACACCGAACCGTT 57.400 45.000 0.84 0.00 0.00 4.44
303 304 2.600470 TTTAAGTGACACCGAACCGT 57.400 45.000 0.84 0.00 0.00 4.83
304 305 2.414138 GGATTTAAGTGACACCGAACCG 59.586 50.000 0.84 0.00 0.00 4.44
305 306 2.414138 CGGATTTAAGTGACACCGAACC 59.586 50.000 0.84 0.00 42.40 3.62
306 307 2.414138 CCGGATTTAAGTGACACCGAAC 59.586 50.000 0.00 0.00 42.40 3.95
307 308 2.299582 TCCGGATTTAAGTGACACCGAA 59.700 45.455 0.00 0.00 42.40 4.30
308 309 1.894466 TCCGGATTTAAGTGACACCGA 59.106 47.619 0.00 0.00 42.40 4.69
309 310 1.997606 GTCCGGATTTAAGTGACACCG 59.002 52.381 7.81 0.00 40.03 4.94
310 311 3.000727 CAGTCCGGATTTAAGTGACACC 58.999 50.000 7.81 0.00 0.00 4.16
311 312 3.432252 CACAGTCCGGATTTAAGTGACAC 59.568 47.826 7.81 0.00 0.00 3.67
312 313 3.556213 CCACAGTCCGGATTTAAGTGACA 60.556 47.826 7.81 0.00 0.00 3.58
313 314 3.000727 CCACAGTCCGGATTTAAGTGAC 58.999 50.000 7.81 0.00 0.00 3.67
314 315 2.901192 TCCACAGTCCGGATTTAAGTGA 59.099 45.455 7.81 0.00 0.00 3.41
315 316 3.328382 TCCACAGTCCGGATTTAAGTG 57.672 47.619 7.81 12.10 0.00 3.16
322 323 3.054434 TGAAATCAATCCACAGTCCGGAT 60.054 43.478 7.81 0.00 45.46 4.18
323 324 2.304470 TGAAATCAATCCACAGTCCGGA 59.696 45.455 0.00 0.00 36.84 5.14
324 325 2.710377 TGAAATCAATCCACAGTCCGG 58.290 47.619 0.00 0.00 0.00 5.14
325 326 6.435430 TTTATGAAATCAATCCACAGTCCG 57.565 37.500 0.00 0.00 0.00 4.79
326 327 9.090692 CATTTTTATGAAATCAATCCACAGTCC 57.909 33.333 0.00 0.00 0.00 3.85
327 328 8.598075 GCATTTTTATGAAATCAATCCACAGTC 58.402 33.333 0.00 0.00 0.00 3.51
328 329 8.095792 TGCATTTTTATGAAATCAATCCACAGT 58.904 29.630 0.00 0.00 0.00 3.55
329 330 8.481974 TGCATTTTTATGAAATCAATCCACAG 57.518 30.769 0.00 0.00 0.00 3.66
330 331 7.549842 CCTGCATTTTTATGAAATCAATCCACA 59.450 33.333 0.00 0.00 0.00 4.17
331 332 7.011669 CCCTGCATTTTTATGAAATCAATCCAC 59.988 37.037 0.00 0.00 0.00 4.02
332 333 7.049133 CCCTGCATTTTTATGAAATCAATCCA 58.951 34.615 0.00 0.00 0.00 3.41
333 334 6.484308 CCCCTGCATTTTTATGAAATCAATCC 59.516 38.462 0.00 0.00 0.00 3.01
334 335 6.017687 GCCCCTGCATTTTTATGAAATCAATC 60.018 38.462 0.00 0.00 37.47 2.67
335 336 5.824097 GCCCCTGCATTTTTATGAAATCAAT 59.176 36.000 0.00 0.00 37.47 2.57
336 337 5.045724 AGCCCCTGCATTTTTATGAAATCAA 60.046 36.000 0.00 0.00 41.13 2.57
337 338 4.470664 AGCCCCTGCATTTTTATGAAATCA 59.529 37.500 0.00 0.00 41.13 2.57
338 339 5.027293 AGCCCCTGCATTTTTATGAAATC 57.973 39.130 0.00 0.00 41.13 2.17
339 340 5.440207 AAGCCCCTGCATTTTTATGAAAT 57.560 34.783 0.00 0.00 41.13 2.17
340 341 4.906747 AAGCCCCTGCATTTTTATGAAA 57.093 36.364 0.00 0.00 41.13 2.69
341 342 4.906747 AAAGCCCCTGCATTTTTATGAA 57.093 36.364 0.00 0.00 41.13 2.57
342 343 4.906747 AAAAGCCCCTGCATTTTTATGA 57.093 36.364 0.00 0.00 34.98 2.15
361 362 2.989840 CCGTCACACAGTTTTGCAAAAA 59.010 40.909 25.40 6.16 0.00 1.94
362 363 2.229062 TCCGTCACACAGTTTTGCAAAA 59.771 40.909 20.46 20.46 0.00 2.44
363 364 1.813178 TCCGTCACACAGTTTTGCAAA 59.187 42.857 8.05 8.05 0.00 3.68
364 365 1.131504 GTCCGTCACACAGTTTTGCAA 59.868 47.619 0.00 0.00 0.00 4.08
365 366 0.730265 GTCCGTCACACAGTTTTGCA 59.270 50.000 0.00 0.00 0.00 4.08
366 367 0.315869 CGTCCGTCACACAGTTTTGC 60.316 55.000 0.00 0.00 0.00 3.68
367 368 0.303493 CCGTCCGTCACACAGTTTTG 59.697 55.000 0.00 0.00 0.00 2.44
368 369 0.176219 TCCGTCCGTCACACAGTTTT 59.824 50.000 0.00 0.00 0.00 2.43
369 370 0.529119 GTCCGTCCGTCACACAGTTT 60.529 55.000 0.00 0.00 0.00 2.66
370 371 1.066918 GTCCGTCCGTCACACAGTT 59.933 57.895 0.00 0.00 0.00 3.16
371 372 1.669049 TTGTCCGTCCGTCACACAGT 61.669 55.000 0.00 0.00 0.00 3.55
372 373 0.528901 TTTGTCCGTCCGTCACACAG 60.529 55.000 0.00 0.00 0.00 3.66
373 374 0.108281 TTTTGTCCGTCCGTCACACA 60.108 50.000 0.00 0.00 0.00 3.72
374 375 1.008329 TTTTTGTCCGTCCGTCACAC 58.992 50.000 0.00 0.00 0.00 3.82
375 376 1.008329 GTTTTTGTCCGTCCGTCACA 58.992 50.000 0.00 0.00 0.00 3.58
376 377 0.305617 GGTTTTTGTCCGTCCGTCAC 59.694 55.000 0.00 0.00 0.00 3.67
377 378 0.814812 GGGTTTTTGTCCGTCCGTCA 60.815 55.000 0.00 0.00 0.00 4.35
378 379 0.533531 AGGGTTTTTGTCCGTCCGTC 60.534 55.000 0.00 0.00 0.00 4.79
379 380 0.758123 TAGGGTTTTTGTCCGTCCGT 59.242 50.000 0.00 0.00 0.00 4.69
380 381 1.150827 GTAGGGTTTTTGTCCGTCCG 58.849 55.000 0.00 0.00 0.00 4.79
381 382 2.259266 TGTAGGGTTTTTGTCCGTCC 57.741 50.000 0.00 0.00 0.00 4.79
382 383 4.572909 AGTATGTAGGGTTTTTGTCCGTC 58.427 43.478 0.00 0.00 0.00 4.79
383 384 4.628963 AGTATGTAGGGTTTTTGTCCGT 57.371 40.909 0.00 0.00 0.00 4.69
384 385 5.952526 AAAGTATGTAGGGTTTTTGTCCG 57.047 39.130 0.00 0.00 0.00 4.79
407 408 8.462811 CGAGTGTGCATATCTCTACCTAATAAT 58.537 37.037 11.77 0.00 0.00 1.28
408 409 7.447545 ACGAGTGTGCATATCTCTACCTAATAA 59.552 37.037 11.77 0.00 0.00 1.40
409 410 6.940867 ACGAGTGTGCATATCTCTACCTAATA 59.059 38.462 11.77 0.00 0.00 0.98
410 411 5.770663 ACGAGTGTGCATATCTCTACCTAAT 59.229 40.000 11.77 0.00 0.00 1.73
411 412 5.008712 CACGAGTGTGCATATCTCTACCTAA 59.991 44.000 11.77 0.00 39.67 2.69
412 413 4.515567 CACGAGTGTGCATATCTCTACCTA 59.484 45.833 11.77 0.00 39.67 3.08
413 414 3.316588 CACGAGTGTGCATATCTCTACCT 59.683 47.826 11.77 0.00 39.67 3.08
414 415 3.633235 CACGAGTGTGCATATCTCTACC 58.367 50.000 11.77 0.00 39.67 3.18
427 428 5.940192 TTTTCTTGAATATGCACGAGTGT 57.060 34.783 5.07 0.00 0.00 3.55
499 501 3.256136 AGCACGAGTTTCTAGTTAGCTGT 59.744 43.478 0.00 0.00 0.00 4.40
502 504 2.345942 GCAGCACGAGTTTCTAGTTAGC 59.654 50.000 0.00 0.00 0.00 3.09
674 3335 1.228245 TTGTGCAGGGTTCCAGCTC 60.228 57.895 3.17 0.43 36.95 4.09
691 3352 4.070716 CCTACGACGAGGTATATCTGGTT 58.929 47.826 0.00 0.00 0.00 3.67
932 3611 1.350665 GGCGCAACAGTAATACCGC 59.649 57.895 10.83 3.09 40.58 5.68
933 3612 0.372334 GTGGCGCAACAGTAATACCG 59.628 55.000 10.88 0.00 0.00 4.02
936 3615 1.363145 GCGGTGGCGCAACAGTAATA 61.363 55.000 18.47 0.00 34.62 0.98
937 3616 2.686816 GCGGTGGCGCAACAGTAAT 61.687 57.895 18.47 0.00 34.62 1.89
938 3617 3.350612 GCGGTGGCGCAACAGTAA 61.351 61.111 18.47 0.00 34.62 2.24
939 3618 4.308458 AGCGGTGGCGCAACAGTA 62.308 61.111 18.47 0.00 46.35 2.74
961 3640 5.780793 AGAGATGGTGTGAGGGTTATATACC 59.219 44.000 0.00 0.00 46.99 2.73
1128 3813 1.451567 CGACCCGAGGCTCTCTGTA 60.452 63.158 13.50 0.00 0.00 2.74
1206 3891 4.675029 CCGTGCCCGTCCTCGTTT 62.675 66.667 0.00 0.00 35.01 3.60
1448 4133 2.886124 GCTCCTCGCCGTACAAGC 60.886 66.667 0.00 0.00 0.00 4.01
1677 4362 9.891828 TCAAATTACTCGTCGTAGTTTTAGTTA 57.108 29.630 3.29 0.00 36.31 2.24
1678 4363 8.801715 TCAAATTACTCGTCGTAGTTTTAGTT 57.198 30.769 3.29 0.00 36.31 2.24
1679 4364 8.801715 TTCAAATTACTCGTCGTAGTTTTAGT 57.198 30.769 3.29 0.00 36.31 2.24
1680 4365 9.508495 GTTTCAAATTACTCGTCGTAGTTTTAG 57.492 33.333 3.29 0.00 36.31 1.85
1681 4366 8.207252 CGTTTCAAATTACTCGTCGTAGTTTTA 58.793 33.333 3.29 0.00 36.31 1.52
1682 4367 7.059212 CGTTTCAAATTACTCGTCGTAGTTTT 58.941 34.615 3.29 0.00 36.31 2.43
1683 4368 6.346040 CCGTTTCAAATTACTCGTCGTAGTTT 60.346 38.462 3.29 3.63 38.20 2.66
1684 4369 5.117592 CCGTTTCAAATTACTCGTCGTAGTT 59.882 40.000 3.29 0.00 30.27 2.24
1685 4370 4.618489 CCGTTTCAAATTACTCGTCGTAGT 59.382 41.667 0.00 0.00 0.00 2.73
1686 4371 4.853196 TCCGTTTCAAATTACTCGTCGTAG 59.147 41.667 0.00 0.00 0.00 3.51
1687 4372 4.793071 TCCGTTTCAAATTACTCGTCGTA 58.207 39.130 0.00 0.00 0.00 3.43
1688 4373 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
1689 4374 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
1690 4375 3.992427 ACCTCCGTTTCAAATTACTCGTC 59.008 43.478 0.00 0.00 0.00 4.20
1691 4376 3.999046 ACCTCCGTTTCAAATTACTCGT 58.001 40.909 0.00 0.00 0.00 4.18
1692 4377 4.032558 GCTACCTCCGTTTCAAATTACTCG 59.967 45.833 0.00 0.00 0.00 4.18
1693 4378 5.176592 AGCTACCTCCGTTTCAAATTACTC 58.823 41.667 0.00 0.00 0.00 2.59
1694 4379 5.161943 AGCTACCTCCGTTTCAAATTACT 57.838 39.130 0.00 0.00 0.00 2.24
1695 4380 6.456584 GCTTAGCTACCTCCGTTTCAAATTAC 60.457 42.308 0.00 0.00 0.00 1.89
1696 4381 5.583457 GCTTAGCTACCTCCGTTTCAAATTA 59.417 40.000 0.00 0.00 0.00 1.40
1697 4382 4.395231 GCTTAGCTACCTCCGTTTCAAATT 59.605 41.667 0.00 0.00 0.00 1.82
1698 4383 3.939592 GCTTAGCTACCTCCGTTTCAAAT 59.060 43.478 0.00 0.00 0.00 2.32
1699 4384 3.007614 AGCTTAGCTACCTCCGTTTCAAA 59.992 43.478 4.30 0.00 36.99 2.69
1700 4385 2.565834 AGCTTAGCTACCTCCGTTTCAA 59.434 45.455 4.30 0.00 36.99 2.69
1701 4386 2.094182 CAGCTTAGCTACCTCCGTTTCA 60.094 50.000 6.35 0.00 36.40 2.69
1702 4387 2.541556 CAGCTTAGCTACCTCCGTTTC 58.458 52.381 6.35 0.00 36.40 2.78
1703 4388 1.405661 GCAGCTTAGCTACCTCCGTTT 60.406 52.381 6.35 0.00 36.40 3.60
1704 4389 0.175989 GCAGCTTAGCTACCTCCGTT 59.824 55.000 6.35 0.00 36.40 4.44
1705 4390 0.970937 TGCAGCTTAGCTACCTCCGT 60.971 55.000 6.35 0.00 36.40 4.69
1706 4391 0.390860 ATGCAGCTTAGCTACCTCCG 59.609 55.000 6.35 0.00 36.40 4.63
1707 4392 2.629336 AATGCAGCTTAGCTACCTCC 57.371 50.000 6.35 0.00 36.40 4.30
1708 4393 4.439289 CCAAAAATGCAGCTTAGCTACCTC 60.439 45.833 6.35 0.00 36.40 3.85
1709 4394 3.445096 CCAAAAATGCAGCTTAGCTACCT 59.555 43.478 6.35 0.00 36.40 3.08
1710 4395 3.443681 TCCAAAAATGCAGCTTAGCTACC 59.556 43.478 6.35 1.49 36.40 3.18
1711 4396 4.701956 TCCAAAAATGCAGCTTAGCTAC 57.298 40.909 6.35 0.88 36.40 3.58
1712 4397 5.195940 AGATCCAAAAATGCAGCTTAGCTA 58.804 37.500 6.35 0.00 36.40 3.32
1713 4398 4.021916 AGATCCAAAAATGCAGCTTAGCT 58.978 39.130 0.00 0.00 40.77 3.32
1714 4399 4.382345 AGATCCAAAAATGCAGCTTAGC 57.618 40.909 0.00 0.00 0.00 3.09
1715 4400 5.957798 TGAAGATCCAAAAATGCAGCTTAG 58.042 37.500 0.00 0.00 0.00 2.18
1716 4401 5.981088 TGAAGATCCAAAAATGCAGCTTA 57.019 34.783 0.00 0.00 0.00 3.09
1717 4402 4.877378 TGAAGATCCAAAAATGCAGCTT 57.123 36.364 0.00 0.00 0.00 3.74
1718 4403 5.416271 AATGAAGATCCAAAAATGCAGCT 57.584 34.783 0.00 0.00 0.00 4.24
1719 4404 6.370718 AGAAAATGAAGATCCAAAAATGCAGC 59.629 34.615 0.00 0.00 0.00 5.25
1720 4405 7.900782 AGAAAATGAAGATCCAAAAATGCAG 57.099 32.000 0.00 0.00 0.00 4.41
1721 4406 7.716123 ACAAGAAAATGAAGATCCAAAAATGCA 59.284 29.630 0.00 0.00 0.00 3.96
1722 4407 8.091385 ACAAGAAAATGAAGATCCAAAAATGC 57.909 30.769 0.00 0.00 0.00 3.56
1725 4410 9.316730 CAGAACAAGAAAATGAAGATCCAAAAA 57.683 29.630 0.00 0.00 0.00 1.94
1726 4411 8.477256 ACAGAACAAGAAAATGAAGATCCAAAA 58.523 29.630 0.00 0.00 0.00 2.44
1727 4412 8.010733 ACAGAACAAGAAAATGAAGATCCAAA 57.989 30.769 0.00 0.00 0.00 3.28
1728 4413 7.587037 ACAGAACAAGAAAATGAAGATCCAA 57.413 32.000 0.00 0.00 0.00 3.53
1729 4414 7.587037 AACAGAACAAGAAAATGAAGATCCA 57.413 32.000 0.00 0.00 0.00 3.41
1735 4420 9.243637 CGGAAATAAACAGAACAAGAAAATGAA 57.756 29.630 0.00 0.00 0.00 2.57
1736 4421 8.625651 TCGGAAATAAACAGAACAAGAAAATGA 58.374 29.630 0.00 0.00 0.00 2.57
1737 4422 8.795786 TCGGAAATAAACAGAACAAGAAAATG 57.204 30.769 0.00 0.00 0.00 2.32
1738 4423 8.630037 ACTCGGAAATAAACAGAACAAGAAAAT 58.370 29.630 0.00 0.00 0.00 1.82
1739 4424 7.913297 CACTCGGAAATAAACAGAACAAGAAAA 59.087 33.333 0.00 0.00 0.00 2.29
1740 4425 7.281324 TCACTCGGAAATAAACAGAACAAGAAA 59.719 33.333 0.00 0.00 0.00 2.52
1741 4426 6.764085 TCACTCGGAAATAAACAGAACAAGAA 59.236 34.615 0.00 0.00 0.00 2.52
1742 4427 6.285224 TCACTCGGAAATAAACAGAACAAGA 58.715 36.000 0.00 0.00 0.00 3.02
1743 4428 6.539649 TCACTCGGAAATAAACAGAACAAG 57.460 37.500 0.00 0.00 0.00 3.16
1744 4429 7.504924 AATCACTCGGAAATAAACAGAACAA 57.495 32.000 0.00 0.00 0.00 2.83
1745 4430 7.504924 AAATCACTCGGAAATAAACAGAACA 57.495 32.000 0.00 0.00 0.00 3.18
1746 4431 7.148967 GCAAAATCACTCGGAAATAAACAGAAC 60.149 37.037 0.00 0.00 0.00 3.01
1747 4432 6.861055 GCAAAATCACTCGGAAATAAACAGAA 59.139 34.615 0.00 0.00 0.00 3.02
1748 4433 6.206634 AGCAAAATCACTCGGAAATAAACAGA 59.793 34.615 0.00 0.00 0.00 3.41
1749 4434 6.381801 AGCAAAATCACTCGGAAATAAACAG 58.618 36.000 0.00 0.00 0.00 3.16
1750 4435 6.325919 AGCAAAATCACTCGGAAATAAACA 57.674 33.333 0.00 0.00 0.00 2.83
1751 4436 6.861055 TCAAGCAAAATCACTCGGAAATAAAC 59.139 34.615 0.00 0.00 0.00 2.01
1752 4437 6.976088 TCAAGCAAAATCACTCGGAAATAAA 58.024 32.000 0.00 0.00 0.00 1.40
1753 4438 6.567687 TCAAGCAAAATCACTCGGAAATAA 57.432 33.333 0.00 0.00 0.00 1.40
1754 4439 6.757897 ATCAAGCAAAATCACTCGGAAATA 57.242 33.333 0.00 0.00 0.00 1.40
1755 4440 5.649782 ATCAAGCAAAATCACTCGGAAAT 57.350 34.783 0.00 0.00 0.00 2.17
1756 4441 5.221880 CAATCAAGCAAAATCACTCGGAAA 58.778 37.500 0.00 0.00 0.00 3.13
1757 4442 4.797471 CAATCAAGCAAAATCACTCGGAA 58.203 39.130 0.00 0.00 0.00 4.30
1758 4443 3.366273 GCAATCAAGCAAAATCACTCGGA 60.366 43.478 0.00 0.00 0.00 4.55
1759 4444 2.919229 GCAATCAAGCAAAATCACTCGG 59.081 45.455 0.00 0.00 0.00 4.63
1760 4445 2.591148 CGCAATCAAGCAAAATCACTCG 59.409 45.455 0.00 0.00 0.00 4.18
1761 4446 3.825308 TCGCAATCAAGCAAAATCACTC 58.175 40.909 0.00 0.00 0.00 3.51
1762 4447 3.921119 TCGCAATCAAGCAAAATCACT 57.079 38.095 0.00 0.00 0.00 3.41
1763 4448 4.445385 ACTTTCGCAATCAAGCAAAATCAC 59.555 37.500 0.00 0.00 0.00 3.06
1764 4449 4.619973 ACTTTCGCAATCAAGCAAAATCA 58.380 34.783 0.00 0.00 0.00 2.57
1765 4450 5.287035 CCTACTTTCGCAATCAAGCAAAATC 59.713 40.000 0.00 0.00 0.00 2.17
1766 4451 5.048083 TCCTACTTTCGCAATCAAGCAAAAT 60.048 36.000 0.00 0.00 0.00 1.82
1767 4452 4.277174 TCCTACTTTCGCAATCAAGCAAAA 59.723 37.500 0.00 0.00 0.00 2.44
1768 4453 3.818210 TCCTACTTTCGCAATCAAGCAAA 59.182 39.130 0.00 0.00 0.00 3.68
1769 4454 3.407698 TCCTACTTTCGCAATCAAGCAA 58.592 40.909 0.00 0.00 0.00 3.91
1770 4455 3.002791 CTCCTACTTTCGCAATCAAGCA 58.997 45.455 0.00 0.00 0.00 3.91
1771 4456 2.352960 CCTCCTACTTTCGCAATCAAGC 59.647 50.000 0.00 0.00 0.00 4.01
1772 4457 3.600388 ACCTCCTACTTTCGCAATCAAG 58.400 45.455 0.00 0.00 0.00 3.02
1773 4458 3.695830 ACCTCCTACTTTCGCAATCAA 57.304 42.857 0.00 0.00 0.00 2.57
1774 4459 4.021229 TCTACCTCCTACTTTCGCAATCA 58.979 43.478 0.00 0.00 0.00 2.57
1775 4460 4.650754 TCTACCTCCTACTTTCGCAATC 57.349 45.455 0.00 0.00 0.00 2.67
1776 4461 4.406003 ACATCTACCTCCTACTTTCGCAAT 59.594 41.667 0.00 0.00 0.00 3.56
1777 4462 3.767673 ACATCTACCTCCTACTTTCGCAA 59.232 43.478 0.00 0.00 0.00 4.85
1778 4463 3.362706 ACATCTACCTCCTACTTTCGCA 58.637 45.455 0.00 0.00 0.00 5.10
1779 4464 4.579753 ACTACATCTACCTCCTACTTTCGC 59.420 45.833 0.00 0.00 0.00 4.70
1780 4465 6.696441 AACTACATCTACCTCCTACTTTCG 57.304 41.667 0.00 0.00 0.00 3.46
1781 4466 8.529476 TGAAAACTACATCTACCTCCTACTTTC 58.471 37.037 0.00 0.00 0.00 2.62
1782 4467 8.431910 TGAAAACTACATCTACCTCCTACTTT 57.568 34.615 0.00 0.00 0.00 2.66
1783 4468 7.894364 TCTGAAAACTACATCTACCTCCTACTT 59.106 37.037 0.00 0.00 0.00 2.24
1784 4469 7.411808 TCTGAAAACTACATCTACCTCCTACT 58.588 38.462 0.00 0.00 0.00 2.57
1785 4470 7.642082 TCTGAAAACTACATCTACCTCCTAC 57.358 40.000 0.00 0.00 0.00 3.18
1786 4471 8.282982 AGATCTGAAAACTACATCTACCTCCTA 58.717 37.037 0.00 0.00 0.00 2.94
1787 4472 7.129425 AGATCTGAAAACTACATCTACCTCCT 58.871 38.462 0.00 0.00 0.00 3.69
1788 4473 7.354751 AGATCTGAAAACTACATCTACCTCC 57.645 40.000 0.00 0.00 0.00 4.30
1797 4482 9.151471 GCACAACTATAAGATCTGAAAACTACA 57.849 33.333 0.00 0.00 0.00 2.74
1798 4483 9.151471 TGCACAACTATAAGATCTGAAAACTAC 57.849 33.333 0.00 0.00 0.00 2.73
1799 4484 9.371136 CTGCACAACTATAAGATCTGAAAACTA 57.629 33.333 0.00 0.00 0.00 2.24
1800 4485 8.097038 TCTGCACAACTATAAGATCTGAAAACT 58.903 33.333 0.00 0.00 0.00 2.66
1801 4486 8.256611 TCTGCACAACTATAAGATCTGAAAAC 57.743 34.615 0.00 0.00 0.00 2.43
1802 4487 9.453572 AATCTGCACAACTATAAGATCTGAAAA 57.546 29.630 0.00 0.00 0.00 2.29
1803 4488 9.102757 GAATCTGCACAACTATAAGATCTGAAA 57.897 33.333 0.00 0.00 0.00 2.69
1804 4489 8.260114 TGAATCTGCACAACTATAAGATCTGAA 58.740 33.333 0.00 0.00 0.00 3.02
1805 4490 7.785033 TGAATCTGCACAACTATAAGATCTGA 58.215 34.615 0.00 0.00 0.00 3.27
1806 4491 7.924947 TCTGAATCTGCACAACTATAAGATCTG 59.075 37.037 0.00 0.00 0.00 2.90
1807 4492 8.016301 TCTGAATCTGCACAACTATAAGATCT 57.984 34.615 0.00 0.00 0.00 2.75
1808 4493 8.830201 ATCTGAATCTGCACAACTATAAGATC 57.170 34.615 0.00 0.00 0.00 2.75
1809 4494 9.624373 AAATCTGAATCTGCACAACTATAAGAT 57.376 29.630 0.00 0.00 0.00 2.40
1810 4495 8.886719 CAAATCTGAATCTGCACAACTATAAGA 58.113 33.333 0.00 0.00 0.00 2.10
1811 4496 8.671921 ACAAATCTGAATCTGCACAACTATAAG 58.328 33.333 0.00 0.00 0.00 1.73
1812 4497 8.453320 CACAAATCTGAATCTGCACAACTATAA 58.547 33.333 0.00 0.00 0.00 0.98
1813 4498 7.066163 CCACAAATCTGAATCTGCACAACTATA 59.934 37.037 0.00 0.00 0.00 1.31
1814 4499 6.127814 CCACAAATCTGAATCTGCACAACTAT 60.128 38.462 0.00 0.00 0.00 2.12
1815 4500 5.181811 CCACAAATCTGAATCTGCACAACTA 59.818 40.000 0.00 0.00 0.00 2.24
1816 4501 4.022589 CCACAAATCTGAATCTGCACAACT 60.023 41.667 0.00 0.00 0.00 3.16
1817 4502 4.232221 CCACAAATCTGAATCTGCACAAC 58.768 43.478 0.00 0.00 0.00 3.32
1818 4503 3.256383 CCCACAAATCTGAATCTGCACAA 59.744 43.478 0.00 0.00 0.00 3.33
1819 4504 2.821378 CCCACAAATCTGAATCTGCACA 59.179 45.455 0.00 0.00 0.00 4.57
1820 4505 3.084039 TCCCACAAATCTGAATCTGCAC 58.916 45.455 0.00 0.00 0.00 4.57
1821 4506 3.009363 TCTCCCACAAATCTGAATCTGCA 59.991 43.478 0.00 0.00 0.00 4.41
1822 4507 3.614092 TCTCCCACAAATCTGAATCTGC 58.386 45.455 0.00 0.00 0.00 4.26
1823 4508 4.634883 CACTCTCCCACAAATCTGAATCTG 59.365 45.833 0.00 0.00 0.00 2.90
1824 4509 4.533707 TCACTCTCCCACAAATCTGAATCT 59.466 41.667 0.00 0.00 0.00 2.40
1825 4510 4.836825 TCACTCTCCCACAAATCTGAATC 58.163 43.478 0.00 0.00 0.00 2.52
1826 4511 4.916041 TCACTCTCCCACAAATCTGAAT 57.084 40.909 0.00 0.00 0.00 2.57
1827 4512 4.286808 TCATCACTCTCCCACAAATCTGAA 59.713 41.667 0.00 0.00 0.00 3.02
1828 4513 3.840078 TCATCACTCTCCCACAAATCTGA 59.160 43.478 0.00 0.00 0.00 3.27
1829 4514 4.212143 TCATCACTCTCCCACAAATCTG 57.788 45.455 0.00 0.00 0.00 2.90
1830 4515 5.045359 TCAATCATCACTCTCCCACAAATCT 60.045 40.000 0.00 0.00 0.00 2.40
1831 4516 5.188434 TCAATCATCACTCTCCCACAAATC 58.812 41.667 0.00 0.00 0.00 2.17
1832 4517 5.183530 TCAATCATCACTCTCCCACAAAT 57.816 39.130 0.00 0.00 0.00 2.32
1833 4518 4.639078 TCAATCATCACTCTCCCACAAA 57.361 40.909 0.00 0.00 0.00 2.83
1834 4519 4.849813 ATCAATCATCACTCTCCCACAA 57.150 40.909 0.00 0.00 0.00 3.33
1835 4520 4.019051 ACAATCAATCATCACTCTCCCACA 60.019 41.667 0.00 0.00 0.00 4.17
1836 4521 4.521146 ACAATCAATCATCACTCTCCCAC 58.479 43.478 0.00 0.00 0.00 4.61
1837 4522 4.849813 ACAATCAATCATCACTCTCCCA 57.150 40.909 0.00 0.00 0.00 4.37
1838 4523 5.884792 AGAAACAATCAATCATCACTCTCCC 59.115 40.000 0.00 0.00 0.00 4.30
1839 4524 6.373774 ACAGAAACAATCAATCATCACTCTCC 59.626 38.462 0.00 0.00 0.00 3.71
1840 4525 7.375106 ACAGAAACAATCAATCATCACTCTC 57.625 36.000 0.00 0.00 0.00 3.20
1841 4526 7.756395 AACAGAAACAATCAATCATCACTCT 57.244 32.000 0.00 0.00 0.00 3.24
1842 4527 8.725148 ACTAACAGAAACAATCAATCATCACTC 58.275 33.333 0.00 0.00 0.00 3.51
1843 4528 8.627208 ACTAACAGAAACAATCAATCATCACT 57.373 30.769 0.00 0.00 0.00 3.41
1888 4573 9.407380 ACAGACATAGCATGGATTTACAATTAA 57.593 29.630 0.00 0.00 33.60 1.40
1889 4574 8.839343 CACAGACATAGCATGGATTTACAATTA 58.161 33.333 0.00 0.00 33.60 1.40
1890 4575 7.201848 CCACAGACATAGCATGGATTTACAATT 60.202 37.037 0.00 0.00 31.69 2.32
1891 4576 6.263842 CCACAGACATAGCATGGATTTACAAT 59.736 38.462 0.00 0.00 31.69 2.71
1892 4577 5.589855 CCACAGACATAGCATGGATTTACAA 59.410 40.000 0.00 0.00 31.69 2.41
1893 4578 5.125356 CCACAGACATAGCATGGATTTACA 58.875 41.667 0.00 0.00 31.69 2.41
1894 4579 5.126067 ACCACAGACATAGCATGGATTTAC 58.874 41.667 0.00 0.00 34.38 2.01
1895 4580 5.372343 ACCACAGACATAGCATGGATTTA 57.628 39.130 0.00 0.00 34.38 1.40
1896 4581 4.240881 ACCACAGACATAGCATGGATTT 57.759 40.909 0.00 0.00 34.38 2.17
1897 4582 3.939740 ACCACAGACATAGCATGGATT 57.060 42.857 0.00 0.00 34.38 3.01
1898 4583 3.939740 AACCACAGACATAGCATGGAT 57.060 42.857 0.00 0.00 34.38 3.41
1899 4584 4.164030 ACATAACCACAGACATAGCATGGA 59.836 41.667 0.00 0.00 34.38 3.41
1900 4585 4.454678 ACATAACCACAGACATAGCATGG 58.545 43.478 0.00 0.00 36.46 3.66
1901 4586 6.441093 AAACATAACCACAGACATAGCATG 57.559 37.500 0.00 0.00 0.00 4.06
1902 4587 6.127647 CCAAAACATAACCACAGACATAGCAT 60.128 38.462 0.00 0.00 0.00 3.79
1903 4588 5.182950 CCAAAACATAACCACAGACATAGCA 59.817 40.000 0.00 0.00 0.00 3.49
1904 4589 5.640732 CCAAAACATAACCACAGACATAGC 58.359 41.667 0.00 0.00 0.00 2.97
1905 4590 5.182950 TGCCAAAACATAACCACAGACATAG 59.817 40.000 0.00 0.00 0.00 2.23
1906 4591 5.073428 TGCCAAAACATAACCACAGACATA 58.927 37.500 0.00 0.00 0.00 2.29
1907 4592 3.894427 TGCCAAAACATAACCACAGACAT 59.106 39.130 0.00 0.00 0.00 3.06
1908 4593 3.291584 TGCCAAAACATAACCACAGACA 58.708 40.909 0.00 0.00 0.00 3.41
1909 4594 4.048504 GTTGCCAAAACATAACCACAGAC 58.951 43.478 0.00 0.00 0.00 3.51
1910 4595 3.068873 GGTTGCCAAAACATAACCACAGA 59.931 43.478 0.00 0.00 41.64 3.41
1911 4596 3.389221 GGTTGCCAAAACATAACCACAG 58.611 45.455 0.00 0.00 41.64 3.66
1912 4597 2.223829 CGGTTGCCAAAACATAACCACA 60.224 45.455 0.00 0.00 42.01 4.17
1913 4598 2.399448 CGGTTGCCAAAACATAACCAC 58.601 47.619 0.00 0.00 42.01 4.16
1914 4599 1.269831 GCGGTTGCCAAAACATAACCA 60.270 47.619 0.00 0.00 42.01 3.67
1915 4600 1.424403 GCGGTTGCCAAAACATAACC 58.576 50.000 0.00 0.00 39.29 2.85
1927 4612 0.240145 GTTACAAAGGAGGCGGTTGC 59.760 55.000 0.00 0.00 41.71 4.17
1928 4613 0.879090 GGTTACAAAGGAGGCGGTTG 59.121 55.000 0.00 0.00 0.00 3.77
1929 4614 0.604511 CGGTTACAAAGGAGGCGGTT 60.605 55.000 0.00 0.00 0.00 4.44
1930 4615 1.004200 CGGTTACAAAGGAGGCGGT 60.004 57.895 0.00 0.00 0.00 5.68
1931 4616 2.396157 GCGGTTACAAAGGAGGCGG 61.396 63.158 0.00 0.00 0.00 6.13
1932 4617 2.396157 GGCGGTTACAAAGGAGGCG 61.396 63.158 0.00 0.00 0.00 5.52
1933 4618 0.608308 AAGGCGGTTACAAAGGAGGC 60.608 55.000 0.00 0.00 0.00 4.70
1934 4619 1.165270 CAAGGCGGTTACAAAGGAGG 58.835 55.000 0.00 0.00 0.00 4.30
1935 4620 1.892209 ACAAGGCGGTTACAAAGGAG 58.108 50.000 0.00 0.00 0.00 3.69
1936 4621 3.488778 TTACAAGGCGGTTACAAAGGA 57.511 42.857 0.00 0.00 0.00 3.36
1937 4622 3.754323 TCATTACAAGGCGGTTACAAAGG 59.246 43.478 0.00 0.00 0.00 3.11
1938 4623 4.142687 CCTCATTACAAGGCGGTTACAAAG 60.143 45.833 0.00 0.00 0.00 2.77
1939 4624 3.754323 CCTCATTACAAGGCGGTTACAAA 59.246 43.478 0.00 0.00 0.00 2.83
1940 4625 3.340034 CCTCATTACAAGGCGGTTACAA 58.660 45.455 0.00 0.00 0.00 2.41
1941 4626 2.355310 CCCTCATTACAAGGCGGTTACA 60.355 50.000 0.00 0.00 32.15 2.41
1942 4627 2.285977 CCCTCATTACAAGGCGGTTAC 58.714 52.381 0.00 0.00 32.15 2.50
1943 4628 1.910671 ACCCTCATTACAAGGCGGTTA 59.089 47.619 0.00 0.00 32.15 2.85
1944 4629 0.696501 ACCCTCATTACAAGGCGGTT 59.303 50.000 0.00 0.00 32.15 4.44
1945 4630 1.575419 TACCCTCATTACAAGGCGGT 58.425 50.000 0.00 0.00 32.15 5.68
1946 4631 2.930826 ATACCCTCATTACAAGGCGG 57.069 50.000 0.00 0.00 32.15 6.13
1947 4632 6.370718 GGTATTAATACCCTCATTACAAGGCG 59.629 42.308 27.84 0.00 45.62 5.52
1948 4633 7.683437 GGTATTAATACCCTCATTACAAGGC 57.317 40.000 27.84 3.78 45.62 4.35
1964 4649 8.370182 GCATTGATTGAAGATTGGGGTATTAAT 58.630 33.333 0.00 0.00 0.00 1.40
1965 4650 7.344093 TGCATTGATTGAAGATTGGGGTATTAA 59.656 33.333 0.00 0.00 0.00 1.40
1966 4651 6.838090 TGCATTGATTGAAGATTGGGGTATTA 59.162 34.615 0.00 0.00 0.00 0.98
1967 4652 5.662208 TGCATTGATTGAAGATTGGGGTATT 59.338 36.000 0.00 0.00 0.00 1.89
1968 4653 5.210430 TGCATTGATTGAAGATTGGGGTAT 58.790 37.500 0.00 0.00 0.00 2.73
1969 4654 4.608269 TGCATTGATTGAAGATTGGGGTA 58.392 39.130 0.00 0.00 0.00 3.69
1970 4655 3.443052 TGCATTGATTGAAGATTGGGGT 58.557 40.909 0.00 0.00 0.00 4.95
1971 4656 4.186159 GTTGCATTGATTGAAGATTGGGG 58.814 43.478 0.00 0.00 0.00 4.96
1972 4657 4.823157 TGTTGCATTGATTGAAGATTGGG 58.177 39.130 0.00 0.00 0.00 4.12
1973 4658 6.978343 ATTGTTGCATTGATTGAAGATTGG 57.022 33.333 0.00 0.00 0.00 3.16
1974 4659 7.802738 ACAATTGTTGCATTGATTGAAGATTG 58.197 30.769 17.88 5.77 34.47 2.67
1975 4660 7.972832 ACAATTGTTGCATTGATTGAAGATT 57.027 28.000 17.88 0.00 34.47 2.40
1976 4661 7.118680 GGAACAATTGTTGCATTGATTGAAGAT 59.881 33.333 30.79 2.80 44.35 2.40
1977 4662 6.424509 GGAACAATTGTTGCATTGATTGAAGA 59.575 34.615 30.79 0.00 44.35 2.87
1978 4663 6.595794 GGAACAATTGTTGCATTGATTGAAG 58.404 36.000 30.79 0.00 44.35 3.02
1979 4664 6.542574 GGAACAATTGTTGCATTGATTGAA 57.457 33.333 30.79 0.00 44.35 2.69
1998 4683 3.555139 CGAGAGAGAGCAAATGATGGAAC 59.445 47.826 0.00 0.00 0.00 3.62
1999 4684 3.196469 ACGAGAGAGAGCAAATGATGGAA 59.804 43.478 0.00 0.00 0.00 3.53
2000 4685 2.762887 ACGAGAGAGAGCAAATGATGGA 59.237 45.455 0.00 0.00 0.00 3.41
2001 4686 3.176552 ACGAGAGAGAGCAAATGATGG 57.823 47.619 0.00 0.00 0.00 3.51
2002 4687 4.869297 AGAAACGAGAGAGAGCAAATGATG 59.131 41.667 0.00 0.00 0.00 3.07
2003 4688 5.083533 AGAAACGAGAGAGAGCAAATGAT 57.916 39.130 0.00 0.00 0.00 2.45
2004 4689 4.527509 AGAAACGAGAGAGAGCAAATGA 57.472 40.909 0.00 0.00 0.00 2.57
2005 4690 5.406649 AGTAGAAACGAGAGAGAGCAAATG 58.593 41.667 0.00 0.00 0.00 2.32
2006 4691 5.652994 AGTAGAAACGAGAGAGAGCAAAT 57.347 39.130 0.00 0.00 0.00 2.32
2007 4692 5.455056 AAGTAGAAACGAGAGAGAGCAAA 57.545 39.130 0.00 0.00 0.00 3.68
2008 4693 5.009710 TCAAAGTAGAAACGAGAGAGAGCAA 59.990 40.000 0.00 0.00 0.00 3.91
2009 4694 4.519350 TCAAAGTAGAAACGAGAGAGAGCA 59.481 41.667 0.00 0.00 0.00 4.26
2010 4695 4.854839 GTCAAAGTAGAAACGAGAGAGAGC 59.145 45.833 0.00 0.00 0.00 4.09
2011 4696 5.854338 GTGTCAAAGTAGAAACGAGAGAGAG 59.146 44.000 0.00 0.00 0.00 3.20
2012 4697 5.759963 GTGTCAAAGTAGAAACGAGAGAGA 58.240 41.667 0.00 0.00 0.00 3.10
2020 4705 6.297353 GCTGATAACGTGTCAAAGTAGAAAC 58.703 40.000 5.54 0.00 0.00 2.78
2024 4709 3.617263 GGGCTGATAACGTGTCAAAGTAG 59.383 47.826 5.54 0.00 0.00 2.57
2025 4710 3.259876 AGGGCTGATAACGTGTCAAAGTA 59.740 43.478 5.54 0.00 0.00 2.24
2026 4711 2.038557 AGGGCTGATAACGTGTCAAAGT 59.961 45.455 5.54 0.00 0.00 2.66
2027 4712 2.699954 AGGGCTGATAACGTGTCAAAG 58.300 47.619 5.54 0.00 0.00 2.77
2028 4713 2.851263 AGGGCTGATAACGTGTCAAA 57.149 45.000 5.54 0.00 0.00 2.69
2031 4716 2.934553 GGTAAAGGGCTGATAACGTGTC 59.065 50.000 0.00 0.00 0.00 3.67
2050 4735 1.192146 TCGCTTGCTCAGGTTAGGGT 61.192 55.000 0.00 0.00 0.00 4.34
2059 4749 0.744414 GTGGCCTAATCGCTTGCTCA 60.744 55.000 3.32 0.00 0.00 4.26
2104 4794 2.882927 ACTGATATTAGTGCGCGGAA 57.117 45.000 8.83 0.00 0.00 4.30
2105 4795 2.739292 GAACTGATATTAGTGCGCGGA 58.261 47.619 8.83 0.00 0.00 5.54
2411 5107 4.410099 TCATTTGCATCTGGTTTCTTCCT 58.590 39.130 0.00 0.00 0.00 3.36
2455 5151 2.305052 CCTCCCCGTTCTTACCTTTCTT 59.695 50.000 0.00 0.00 0.00 2.52
2535 5238 7.855375 TCAATCAAGATAGAGATGGTCTTTGT 58.145 34.615 0.00 0.00 36.64 2.83
2603 5321 3.239253 AAACGACGCCCTGGAGGT 61.239 61.111 0.00 0.00 38.26 3.85
2692 5412 4.537433 GAAGGATGCCGCCGCTCT 62.537 66.667 0.00 0.00 35.36 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.