Multiple sequence alignment - TraesCS4D01G144000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G144000 chr4D 100.000 3942 0 0 1 3942 132197844 132201785 0.000000e+00 7280
1 TraesCS4D01G144000 chr4B 97.196 1569 36 5 863 2428 165308267 165306704 0.000000e+00 2647
2 TraesCS4D01G144000 chr4B 97.455 668 14 2 2559 3226 165306512 165305848 0.000000e+00 1136
3 TraesCS4D01G144000 chr4B 87.500 168 18 2 3467 3633 165305288 165305123 1.450000e-44 191
4 TraesCS4D01G144000 chr4B 97.826 92 2 0 2443 2534 165306715 165306624 4.080000e-35 159
5 TraesCS4D01G144000 chr4B 90.698 86 7 1 148 232 37553352 37553437 3.220000e-21 113
6 TraesCS4D01G144000 chr4A 96.793 1216 31 6 942 2156 430432927 430431719 0.000000e+00 2023
7 TraesCS4D01G144000 chr4A 93.814 1180 36 13 2240 3416 430431719 430430574 0.000000e+00 1740
8 TraesCS4D01G144000 chr4A 92.308 156 12 0 3634 3789 430181873 430181718 5.130000e-54 222
9 TraesCS4D01G144000 chr7B 90.654 856 49 14 38 866 444169878 444170729 0.000000e+00 1109
10 TraesCS4D01G144000 chr2A 90.432 857 50 17 38 866 1634610 1635462 0.000000e+00 1099
11 TraesCS4D01G144000 chr3B 87.346 569 48 11 299 862 491510833 491510284 7.190000e-177 630
12 TraesCS4D01G144000 chr3B 88.889 405 36 7 267 663 82289088 82289491 1.270000e-134 490
13 TraesCS4D01G144000 chr2B 84.914 643 55 16 225 863 30485877 30485273 2.600000e-171 612
14 TraesCS4D01G144000 chr2B 90.698 86 7 1 148 232 407226579 407226664 3.220000e-21 113
15 TraesCS4D01G144000 chr6B 87.921 505 39 7 365 858 658668142 658667649 3.420000e-160 575
16 TraesCS4D01G144000 chr6B 92.683 123 9 0 201 323 658668247 658668125 1.130000e-40 178
17 TraesCS4D01G144000 chr5D 91.460 363 30 1 225 587 344876105 344875744 7.610000e-137 497
18 TraesCS4D01G144000 chr5D 82.727 220 38 0 2723 2942 114477576 114477795 3.110000e-46 196
19 TraesCS4D01G144000 chr5D 83.756 197 13 7 670 862 344875425 344875244 6.770000e-38 169
20 TraesCS4D01G144000 chr5B 88.670 406 36 7 267 663 596412160 596411756 1.650000e-133 486
21 TraesCS4D01G144000 chr5A 88.657 335 32 5 267 595 365052840 365053174 1.710000e-108 403
22 TraesCS4D01G144000 chr5A 83.182 220 37 0 2723 2942 119835226 119835445 6.680000e-48 202
23 TraesCS4D01G144000 chr7A 87.702 309 31 6 267 569 731445986 731445679 1.740000e-93 353
24 TraesCS4D01G144000 chr7A 85.965 171 22 2 3467 3636 532474538 532474707 8.700000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G144000 chr4D 132197844 132201785 3941 False 7280.00 7280 100.00000 1 3942 1 chr4D.!!$F1 3941
1 TraesCS4D01G144000 chr4B 165305123 165308267 3144 True 1033.25 2647 94.99425 863 3633 4 chr4B.!!$R1 2770
2 TraesCS4D01G144000 chr4A 430430574 430432927 2353 True 1881.50 2023 95.30350 942 3416 2 chr4A.!!$R2 2474
3 TraesCS4D01G144000 chr7B 444169878 444170729 851 False 1109.00 1109 90.65400 38 866 1 chr7B.!!$F1 828
4 TraesCS4D01G144000 chr2A 1634610 1635462 852 False 1099.00 1099 90.43200 38 866 1 chr2A.!!$F1 828
5 TraesCS4D01G144000 chr3B 491510284 491510833 549 True 630.00 630 87.34600 299 862 1 chr3B.!!$R1 563
6 TraesCS4D01G144000 chr2B 30485273 30485877 604 True 612.00 612 84.91400 225 863 1 chr2B.!!$R1 638
7 TraesCS4D01G144000 chr6B 658667649 658668247 598 True 376.50 575 90.30200 201 858 2 chr6B.!!$R1 657
8 TraesCS4D01G144000 chr5D 344875244 344876105 861 True 333.00 497 87.60800 225 862 2 chr5D.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.035439 TCGACCATGGAGCTTTTCCC 60.035 55.000 21.47 0.0 46.19 3.97 F
772 1018 0.394565 AAAGGAACTGCACGAGAGCT 59.605 50.000 0.00 0.0 40.86 4.09 F
773 1019 1.257743 AAGGAACTGCACGAGAGCTA 58.742 50.000 0.00 0.0 40.86 3.32 F
1943 2193 1.371183 CCAGTTCGGGAGTCTGCAA 59.629 57.895 0.00 0.0 33.97 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2172 2.050269 CAGACTCCCGAACTGGTGT 58.950 57.895 0.00 0.00 34.92 4.16 R
2099 2349 0.104672 TGGGGGTGAAGACCAGAAGA 60.105 55.000 0.00 0.00 45.25 2.87 R
2165 2415 2.897326 GGCAAAAAGGGTAATGTGACCT 59.103 45.455 0.00 0.00 39.66 3.85 R
3696 4381 0.025513 CGTCGCACAAGCTTAGATGC 59.974 55.000 15.95 15.95 39.10 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.911137 TGCTGCAACCGTTGTTCA 58.089 50.000 12.77 5.79 30.42 3.18
18 19 2.184323 TGCTGCAACCGTTGTTCAA 58.816 47.368 12.77 0.00 30.42 2.69
19 20 0.743688 TGCTGCAACCGTTGTTCAAT 59.256 45.000 12.77 0.00 30.42 2.57
20 21 1.135915 TGCTGCAACCGTTGTTCAATT 59.864 42.857 12.77 0.00 30.42 2.32
21 22 2.200899 GCTGCAACCGTTGTTCAATTT 58.799 42.857 12.77 0.00 30.42 1.82
22 23 2.607180 GCTGCAACCGTTGTTCAATTTT 59.393 40.909 12.77 0.00 30.42 1.82
23 24 3.543852 GCTGCAACCGTTGTTCAATTTTG 60.544 43.478 12.77 0.00 30.42 2.44
24 25 2.349886 TGCAACCGTTGTTCAATTTTGC 59.650 40.909 12.77 15.33 38.65 3.68
25 26 2.607180 GCAACCGTTGTTCAATTTTGCT 59.393 40.909 12.77 0.00 35.95 3.91
26 27 3.543852 GCAACCGTTGTTCAATTTTGCTG 60.544 43.478 12.77 2.21 35.95 4.41
27 28 2.820330 ACCGTTGTTCAATTTTGCTGG 58.180 42.857 0.00 0.00 0.00 4.85
28 29 2.428890 ACCGTTGTTCAATTTTGCTGGA 59.571 40.909 0.00 0.00 0.00 3.86
29 30 3.118956 ACCGTTGTTCAATTTTGCTGGAA 60.119 39.130 0.00 0.00 0.00 3.53
30 31 3.245048 CCGTTGTTCAATTTTGCTGGAAC 59.755 43.478 0.00 0.00 39.93 3.62
31 32 3.245048 CGTTGTTCAATTTTGCTGGAACC 59.755 43.478 0.00 0.00 39.02 3.62
32 33 3.090952 TGTTCAATTTTGCTGGAACCG 57.909 42.857 0.00 0.00 39.02 4.44
33 34 2.223923 TGTTCAATTTTGCTGGAACCGG 60.224 45.455 0.00 0.00 39.02 5.28
34 35 0.965439 TCAATTTTGCTGGAACCGGG 59.035 50.000 6.32 0.00 0.00 5.73
35 36 0.670239 CAATTTTGCTGGAACCGGGC 60.670 55.000 6.32 0.00 0.00 6.13
36 37 1.118356 AATTTTGCTGGAACCGGGCA 61.118 50.000 6.32 1.33 0.00 5.36
70 71 0.035439 TCGACCATGGAGCTTTTCCC 60.035 55.000 21.47 0.00 46.19 3.97
98 99 3.443588 GCTTTTGCTGGAACCGGT 58.556 55.556 0.00 0.00 43.35 5.28
207 208 3.157252 ACTGCCGGCGATGGAGAT 61.157 61.111 23.90 1.07 0.00 2.75
237 238 1.078214 GTGCTGCATACAGGGCTCA 60.078 57.895 5.27 0.00 44.63 4.26
275 276 3.215151 TCATCGGTTTTTGCTACAACCA 58.785 40.909 15.02 4.50 42.43 3.67
276 277 3.823873 TCATCGGTTTTTGCTACAACCAT 59.176 39.130 15.02 6.28 42.43 3.55
278 279 5.473846 TCATCGGTTTTTGCTACAACCATTA 59.526 36.000 15.02 2.22 42.43 1.90
313 315 3.500680 ACAACCGTTGTCGATTTTGCTAT 59.499 39.130 11.24 0.00 40.56 2.97
359 361 1.032014 ATTGCACAAGCCAACGTCTT 58.968 45.000 0.00 0.00 41.13 3.01
391 395 2.306847 ACAACCCTTGCTCGATTTTGT 58.693 42.857 0.00 0.00 0.00 2.83
406 410 3.758973 TTGTTGGAACGGGCGCTCA 62.759 57.895 8.62 0.00 0.00 4.26
407 411 3.423154 GTTGGAACGGGCGCTCAG 61.423 66.667 8.62 2.21 0.00 3.35
696 936 3.344215 GCTCGCTCATCCATGGCG 61.344 66.667 6.96 6.94 43.69 5.69
741 987 1.649664 GCTGTGCTCACGAGATTCAT 58.350 50.000 0.00 0.00 0.00 2.57
772 1018 0.394565 AAAGGAACTGCACGAGAGCT 59.605 50.000 0.00 0.00 40.86 4.09
773 1019 1.257743 AAGGAACTGCACGAGAGCTA 58.742 50.000 0.00 0.00 40.86 3.32
779 1025 4.440250 GGAACTGCACGAGAGCTAAATCTA 60.440 45.833 0.00 0.00 34.99 1.98
790 1036 3.670625 AGCTAAATCTAACGGCAACACA 58.329 40.909 0.00 0.00 0.00 3.72
916 1165 4.105697 TCCTTCCCATTTCCTACAAACACT 59.894 41.667 0.00 0.00 0.00 3.55
917 1166 4.832823 CCTTCCCATTTCCTACAAACACTT 59.167 41.667 0.00 0.00 0.00 3.16
1260 1509 1.955529 CTCGCGTGTGTGGGAATTCG 61.956 60.000 5.77 0.00 0.00 3.34
1323 1572 6.153170 TCGGTACTTACATCTTACATGTTCCA 59.847 38.462 2.30 0.00 33.76 3.53
1465 1715 2.874701 CCCATACCTTCTCAGCAATTCG 59.125 50.000 0.00 0.00 0.00 3.34
1483 1733 4.931661 TTCGTCTCACCTTCTACAACTT 57.068 40.909 0.00 0.00 0.00 2.66
1484 1734 6.585695 ATTCGTCTCACCTTCTACAACTTA 57.414 37.500 0.00 0.00 0.00 2.24
1485 1735 5.624344 TCGTCTCACCTTCTACAACTTAG 57.376 43.478 0.00 0.00 0.00 2.18
1581 1831 6.605471 ATTTTAATCCAAGGGAAGGAACAC 57.395 37.500 0.00 0.00 38.93 3.32
1696 1946 7.677319 ACTGTGGTTACCCTTTACTACTAGAAT 59.323 37.037 0.00 0.00 0.00 2.40
1790 2040 4.888038 TGCATTGTCAGAGCAATACATC 57.112 40.909 0.00 0.00 37.00 3.06
1791 2041 3.310501 TGCATTGTCAGAGCAATACATCG 59.689 43.478 0.00 0.00 37.00 3.84
1854 2104 3.286353 TCTGTGCCTTCATTGTTGTGAA 58.714 40.909 0.00 0.00 36.70 3.18
1943 2193 1.371183 CCAGTTCGGGAGTCTGCAA 59.629 57.895 0.00 0.00 33.97 4.08
2099 2349 2.504367 CTCGGTTTTGACCTGTCCAAT 58.496 47.619 0.00 0.00 0.00 3.16
2165 2415 9.964303 TTACGTACTCATTAGTCTTGTTTACAA 57.036 29.630 0.00 0.00 37.15 2.41
2248 2498 3.534554 TGTGCTAGATGACAATTGCGAT 58.465 40.909 5.05 0.00 0.00 4.58
2437 2687 1.351683 ACATGGTAGTTACCCCGCAAA 59.648 47.619 5.90 0.00 45.87 3.68
2438 2688 2.224818 ACATGGTAGTTACCCCGCAAAA 60.225 45.455 5.90 0.00 45.87 2.44
2803 3140 1.404986 CGGTCAAGGAATGCCGAGTTA 60.405 52.381 0.00 0.00 45.57 2.24
2845 3182 2.349817 CGCAGCGATGAACAAGAAGTTT 60.350 45.455 9.98 0.00 41.51 2.66
2911 3248 3.654143 AGCCTGGCCATGCACTCA 61.654 61.111 31.14 0.00 0.00 3.41
2954 3291 5.412640 TCGAGTTGTGACTGTTGAAAGTTA 58.587 37.500 0.00 0.00 35.88 2.24
3224 3562 2.985896 CCACGAATGGTTGTAGATGGT 58.014 47.619 0.00 0.00 41.64 3.55
3225 3563 2.677836 CCACGAATGGTTGTAGATGGTG 59.322 50.000 0.00 0.00 41.64 4.17
3226 3564 2.095853 CACGAATGGTTGTAGATGGTGC 59.904 50.000 0.00 0.00 0.00 5.01
3227 3565 2.290008 ACGAATGGTTGTAGATGGTGCA 60.290 45.455 0.00 0.00 0.00 4.57
3228 3566 2.746904 CGAATGGTTGTAGATGGTGCAA 59.253 45.455 0.00 0.00 0.00 4.08
3229 3567 3.181507 CGAATGGTTGTAGATGGTGCAAG 60.182 47.826 0.00 0.00 30.47 4.01
3230 3568 2.949177 TGGTTGTAGATGGTGCAAGT 57.051 45.000 0.00 0.00 30.47 3.16
3231 3569 4.568072 ATGGTTGTAGATGGTGCAAGTA 57.432 40.909 0.00 0.00 30.47 2.24
3232 3570 4.568072 TGGTTGTAGATGGTGCAAGTAT 57.432 40.909 0.00 0.00 30.47 2.12
3233 3571 4.260985 TGGTTGTAGATGGTGCAAGTATG 58.739 43.478 0.00 0.00 30.47 2.39
3234 3572 4.019771 TGGTTGTAGATGGTGCAAGTATGA 60.020 41.667 0.00 0.00 30.47 2.15
3235 3573 5.126067 GGTTGTAGATGGTGCAAGTATGAT 58.874 41.667 0.00 0.00 30.47 2.45
3236 3574 5.008019 GGTTGTAGATGGTGCAAGTATGATG 59.992 44.000 0.00 0.00 30.47 3.07
3237 3575 4.129380 TGTAGATGGTGCAAGTATGATGC 58.871 43.478 0.00 0.00 44.08 3.91
3238 3576 3.572632 AGATGGTGCAAGTATGATGCT 57.427 42.857 0.00 0.00 44.14 3.79
3239 3577 3.474600 AGATGGTGCAAGTATGATGCTC 58.525 45.455 0.00 0.00 44.14 4.26
3240 3578 3.136077 AGATGGTGCAAGTATGATGCTCT 59.864 43.478 0.00 0.00 44.14 4.09
3241 3579 2.635714 TGGTGCAAGTATGATGCTCTG 58.364 47.619 0.00 0.00 44.14 3.35
3242 3580 1.945394 GGTGCAAGTATGATGCTCTGG 59.055 52.381 0.00 0.00 44.14 3.86
3341 3990 1.211949 ACCAGGGGATGATGTAAACCG 59.788 52.381 0.00 0.00 0.00 4.44
3348 3997 3.255725 GGATGATGTAAACCGTGAACGA 58.744 45.455 4.03 0.00 43.02 3.85
3390 4042 1.609208 TGGCACCTCTGCTTTTTCTC 58.391 50.000 0.00 0.00 43.66 2.87
3403 4056 8.697507 TCTGCTTTTTCTCTTTTCTAATCCTT 57.302 30.769 0.00 0.00 0.00 3.36
3404 4057 9.793259 TCTGCTTTTTCTCTTTTCTAATCCTTA 57.207 29.630 0.00 0.00 0.00 2.69
3451 4105 9.851267 ATCATATCCCTCTATTTATATCCCTCC 57.149 37.037 0.00 0.00 0.00 4.30
3452 4106 9.041791 TCATATCCCTCTATTTATATCCCTCCT 57.958 37.037 0.00 0.00 0.00 3.69
3456 4110 5.536916 CCCTCTATTTATATCCCTCCTAGCG 59.463 48.000 0.00 0.00 0.00 4.26
3460 4114 3.741245 TTATATCCCTCCTAGCGAGCT 57.259 47.619 2.25 2.25 37.27 4.09
3461 4115 2.137810 ATATCCCTCCTAGCGAGCTC 57.862 55.000 2.73 2.73 37.27 4.09
3462 4116 0.771755 TATCCCTCCTAGCGAGCTCA 59.228 55.000 15.40 0.00 37.27 4.26
3464 4118 0.753479 TCCCTCCTAGCGAGCTCAAG 60.753 60.000 15.40 7.60 37.27 3.02
3475 4160 1.735369 CGAGCTCAAGAGAGGCTCAAC 60.735 57.143 18.26 10.31 41.25 3.18
3502 4187 4.439253 AACTATTACAAGATGGGCCCTC 57.561 45.455 25.70 17.79 0.00 4.30
3531 4216 4.963276 TTTCCTAATTCATGAGCAACGG 57.037 40.909 0.00 0.00 0.00 4.44
3535 4220 5.924356 TCCTAATTCATGAGCAACGGAATA 58.076 37.500 0.00 0.00 30.29 1.75
3536 4221 5.991606 TCCTAATTCATGAGCAACGGAATAG 59.008 40.000 0.00 0.00 30.29 1.73
3537 4222 4.558538 AATTCATGAGCAACGGAATAGC 57.441 40.909 0.00 0.00 30.29 2.97
3538 4223 1.953559 TCATGAGCAACGGAATAGCC 58.046 50.000 0.00 0.00 0.00 3.93
3539 4224 1.486310 TCATGAGCAACGGAATAGCCT 59.514 47.619 0.00 0.00 0.00 4.58
3540 4225 1.869767 CATGAGCAACGGAATAGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
3541 4226 1.195115 TGAGCAACGGAATAGCCTCT 58.805 50.000 0.00 0.00 0.00 3.69
3542 4227 1.137086 TGAGCAACGGAATAGCCTCTC 59.863 52.381 0.00 0.00 0.00 3.20
3543 4228 1.410882 GAGCAACGGAATAGCCTCTCT 59.589 52.381 0.00 0.00 0.00 3.10
3544 4229 2.623889 GAGCAACGGAATAGCCTCTCTA 59.376 50.000 0.00 0.00 0.00 2.43
3545 4230 2.625790 AGCAACGGAATAGCCTCTCTAG 59.374 50.000 0.00 0.00 0.00 2.43
3557 4242 1.919918 CTCTCTAGGACTTTGCGCAG 58.080 55.000 11.31 1.78 0.00 5.18
3559 4244 2.100584 CTCTCTAGGACTTTGCGCAGAT 59.899 50.000 11.31 0.00 0.00 2.90
3567 4252 3.492656 GGACTTTGCGCAGATGAGGTATA 60.493 47.826 11.31 0.00 0.00 1.47
3570 4255 4.141937 ACTTTGCGCAGATGAGGTATAAGA 60.142 41.667 11.31 0.00 0.00 2.10
3581 4266 3.932710 TGAGGTATAAGAAAAGCTGCACG 59.067 43.478 1.02 0.00 0.00 5.34
3582 4267 2.678336 AGGTATAAGAAAAGCTGCACGC 59.322 45.455 1.02 0.47 39.57 5.34
3586 4271 0.110056 AAGAAAAGCTGCACGCGATG 60.110 50.000 15.93 8.90 45.59 3.84
3633 4318 1.799181 CGCTGGACCTACAGATTGTCG 60.799 57.143 0.00 0.00 40.97 4.35
3634 4319 1.927895 CTGGACCTACAGATTGTCGC 58.072 55.000 0.00 0.00 40.97 5.19
3635 4320 1.478510 CTGGACCTACAGATTGTCGCT 59.521 52.381 0.00 0.00 40.97 4.93
3636 4321 1.899814 TGGACCTACAGATTGTCGCTT 59.100 47.619 0.00 0.00 0.00 4.68
3637 4322 2.094182 TGGACCTACAGATTGTCGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
3638 4323 2.094182 GGACCTACAGATTGTCGCTTCA 60.094 50.000 0.00 0.00 0.00 3.02
3639 4324 3.182967 GACCTACAGATTGTCGCTTCAG 58.817 50.000 0.00 0.00 0.00 3.02
3640 4325 1.929836 CCTACAGATTGTCGCTTCAGC 59.070 52.381 0.00 0.00 37.78 4.26
3641 4326 2.610433 CTACAGATTGTCGCTTCAGCA 58.390 47.619 0.00 0.00 42.21 4.41
3642 4327 1.436600 ACAGATTGTCGCTTCAGCAG 58.563 50.000 0.00 0.00 42.21 4.24
3643 4328 1.001293 ACAGATTGTCGCTTCAGCAGA 59.999 47.619 0.00 0.00 42.21 4.26
3644 4329 2.277969 CAGATTGTCGCTTCAGCAGAT 58.722 47.619 0.00 0.00 42.21 2.90
3645 4330 3.118992 ACAGATTGTCGCTTCAGCAGATA 60.119 43.478 0.00 0.00 42.21 1.98
3646 4331 3.490155 CAGATTGTCGCTTCAGCAGATAG 59.510 47.826 0.00 0.00 42.21 2.08
3647 4332 1.645034 TTGTCGCTTCAGCAGATAGC 58.355 50.000 0.00 0.00 46.19 2.97
3662 4347 6.624710 GCAGATAGCACATCGTAATAGAAG 57.375 41.667 0.00 0.00 44.79 2.85
3663 4348 6.153067 GCAGATAGCACATCGTAATAGAAGT 58.847 40.000 0.00 0.00 44.79 3.01
3664 4349 6.306837 GCAGATAGCACATCGTAATAGAAGTC 59.693 42.308 0.00 0.00 44.79 3.01
3665 4350 7.363431 CAGATAGCACATCGTAATAGAAGTCA 58.637 38.462 0.00 0.00 0.00 3.41
3666 4351 7.862873 CAGATAGCACATCGTAATAGAAGTCAA 59.137 37.037 0.00 0.00 0.00 3.18
3667 4352 8.580720 AGATAGCACATCGTAATAGAAGTCAAT 58.419 33.333 0.00 0.00 0.00 2.57
3668 4353 9.197694 GATAGCACATCGTAATAGAAGTCAATT 57.802 33.333 0.00 0.00 0.00 2.32
3669 4354 7.849804 AGCACATCGTAATAGAAGTCAATTT 57.150 32.000 0.00 0.00 0.00 1.82
3670 4355 7.910304 AGCACATCGTAATAGAAGTCAATTTC 58.090 34.615 0.00 0.00 0.00 2.17
3671 4356 7.011482 AGCACATCGTAATAGAAGTCAATTTCC 59.989 37.037 0.00 0.00 0.00 3.13
3672 4357 7.630924 CACATCGTAATAGAAGTCAATTTCCC 58.369 38.462 0.00 0.00 0.00 3.97
3673 4358 7.279981 CACATCGTAATAGAAGTCAATTTCCCA 59.720 37.037 0.00 0.00 0.00 4.37
3674 4359 7.827236 ACATCGTAATAGAAGTCAATTTCCCAA 59.173 33.333 0.00 0.00 0.00 4.12
3675 4360 8.840321 CATCGTAATAGAAGTCAATTTCCCAAT 58.160 33.333 0.00 0.00 0.00 3.16
3676 4361 8.801882 TCGTAATAGAAGTCAATTTCCCAATT 57.198 30.769 0.00 0.00 32.36 2.32
3677 4362 8.889717 TCGTAATAGAAGTCAATTTCCCAATTC 58.110 33.333 0.00 0.00 29.41 2.17
3678 4363 8.129211 CGTAATAGAAGTCAATTTCCCAATTCC 58.871 37.037 0.00 0.00 29.41 3.01
3679 4364 9.190317 GTAATAGAAGTCAATTTCCCAATTCCT 57.810 33.333 0.00 0.00 29.41 3.36
3680 4365 8.670521 AATAGAAGTCAATTTCCCAATTCCTT 57.329 30.769 0.00 0.00 29.41 3.36
3681 4366 6.350629 AGAAGTCAATTTCCCAATTCCTTG 57.649 37.500 0.00 0.00 29.41 3.61
3682 4367 4.541973 AGTCAATTTCCCAATTCCTTGC 57.458 40.909 0.00 0.00 29.41 4.01
3683 4368 3.903090 AGTCAATTTCCCAATTCCTTGCA 59.097 39.130 0.00 0.00 29.41 4.08
3684 4369 4.533311 AGTCAATTTCCCAATTCCTTGCAT 59.467 37.500 0.00 0.00 29.41 3.96
3685 4370 5.013391 AGTCAATTTCCCAATTCCTTGCATT 59.987 36.000 0.00 0.00 29.41 3.56
3686 4371 5.706833 GTCAATTTCCCAATTCCTTGCATTT 59.293 36.000 0.00 0.00 29.41 2.32
3687 4372 6.207221 GTCAATTTCCCAATTCCTTGCATTTT 59.793 34.615 0.00 0.00 29.41 1.82
3688 4373 6.430616 TCAATTTCCCAATTCCTTGCATTTTC 59.569 34.615 0.00 0.00 29.41 2.29
3689 4374 5.565455 TTTCCCAATTCCTTGCATTTTCT 57.435 34.783 0.00 0.00 0.00 2.52
3690 4375 6.678568 TTTCCCAATTCCTTGCATTTTCTA 57.321 33.333 0.00 0.00 0.00 2.10
3691 4376 6.678568 TTCCCAATTCCTTGCATTTTCTAA 57.321 33.333 0.00 0.00 0.00 2.10
3692 4377 6.872585 TCCCAATTCCTTGCATTTTCTAAT 57.127 33.333 0.00 0.00 0.00 1.73
3693 4378 6.877236 TCCCAATTCCTTGCATTTTCTAATC 58.123 36.000 0.00 0.00 0.00 1.75
3694 4379 6.051074 CCCAATTCCTTGCATTTTCTAATCC 58.949 40.000 0.00 0.00 0.00 3.01
3695 4380 6.126968 CCCAATTCCTTGCATTTTCTAATCCT 60.127 38.462 0.00 0.00 0.00 3.24
3696 4381 6.759827 CCAATTCCTTGCATTTTCTAATCCTG 59.240 38.462 0.00 0.00 0.00 3.86
3697 4382 4.989279 TCCTTGCATTTTCTAATCCTGC 57.011 40.909 0.00 0.00 0.00 4.85
3698 4383 4.343231 TCCTTGCATTTTCTAATCCTGCA 58.657 39.130 0.00 0.00 0.00 4.41
3699 4384 4.957954 TCCTTGCATTTTCTAATCCTGCAT 59.042 37.500 0.00 0.00 0.00 3.96
3700 4385 5.068198 TCCTTGCATTTTCTAATCCTGCATC 59.932 40.000 0.00 0.00 0.00 3.91
3701 4386 5.068723 CCTTGCATTTTCTAATCCTGCATCT 59.931 40.000 0.00 0.00 0.00 2.90
3702 4387 6.263842 CCTTGCATTTTCTAATCCTGCATCTA 59.736 38.462 0.00 0.00 0.00 1.98
3703 4388 7.201848 CCTTGCATTTTCTAATCCTGCATCTAA 60.202 37.037 0.00 0.00 0.00 2.10
3704 4389 7.268199 TGCATTTTCTAATCCTGCATCTAAG 57.732 36.000 0.00 0.00 0.00 2.18
3705 4390 6.148264 GCATTTTCTAATCCTGCATCTAAGC 58.852 40.000 0.00 0.00 0.00 3.09
3706 4391 6.016443 GCATTTTCTAATCCTGCATCTAAGCT 60.016 38.462 0.00 0.00 34.99 3.74
3707 4392 7.469732 GCATTTTCTAATCCTGCATCTAAGCTT 60.470 37.037 3.48 3.48 34.99 3.74
3708 4393 6.932356 TTTCTAATCCTGCATCTAAGCTTG 57.068 37.500 9.86 0.00 34.99 4.01
3709 4394 5.620738 TCTAATCCTGCATCTAAGCTTGT 57.379 39.130 9.86 0.00 34.99 3.16
3710 4395 5.363101 TCTAATCCTGCATCTAAGCTTGTG 58.637 41.667 9.86 6.59 34.99 3.33
3711 4396 1.742761 TCCTGCATCTAAGCTTGTGC 58.257 50.000 19.98 19.98 38.05 4.57
3712 4397 0.376152 CCTGCATCTAAGCTTGTGCG 59.624 55.000 20.80 16.61 45.42 5.34
3713 4398 1.362768 CTGCATCTAAGCTTGTGCGA 58.637 50.000 20.80 12.96 45.42 5.10
3714 4399 1.061711 CTGCATCTAAGCTTGTGCGAC 59.938 52.381 20.80 5.04 45.42 5.19
3715 4400 0.025513 GCATCTAAGCTTGTGCGACG 59.974 55.000 9.86 0.00 45.42 5.12
3716 4401 1.350193 CATCTAAGCTTGTGCGACGT 58.650 50.000 9.86 0.00 45.42 4.34
3717 4402 2.526077 CATCTAAGCTTGTGCGACGTA 58.474 47.619 9.86 0.00 45.42 3.57
3718 4403 1.973138 TCTAAGCTTGTGCGACGTAC 58.027 50.000 9.86 9.30 45.42 3.67
3719 4404 1.267533 TCTAAGCTTGTGCGACGTACA 59.732 47.619 15.02 15.02 45.42 2.90
3720 4405 1.649171 CTAAGCTTGTGCGACGTACAG 59.351 52.381 18.03 13.33 45.42 2.74
3721 4406 0.944311 AAGCTTGTGCGACGTACAGG 60.944 55.000 20.94 20.94 45.42 4.00
3722 4407 3.011760 GCTTGTGCGACGTACAGGC 62.012 63.158 30.40 30.40 42.51 4.85
3723 4408 2.356553 TTGTGCGACGTACAGGCC 60.357 61.111 18.03 0.00 28.83 5.19
3724 4409 3.153270 TTGTGCGACGTACAGGCCA 62.153 57.895 18.03 1.50 28.83 5.36
3725 4410 2.356553 GTGCGACGTACAGGCCAA 60.357 61.111 11.40 0.00 0.00 4.52
3726 4411 1.957186 GTGCGACGTACAGGCCAAA 60.957 57.895 11.40 0.00 0.00 3.28
3727 4412 1.004320 TGCGACGTACAGGCCAAAT 60.004 52.632 5.01 0.00 0.00 2.32
3728 4413 0.246910 TGCGACGTACAGGCCAAATA 59.753 50.000 5.01 0.00 0.00 1.40
3729 4414 1.134640 TGCGACGTACAGGCCAAATAT 60.135 47.619 5.01 0.00 0.00 1.28
3730 4415 1.260561 GCGACGTACAGGCCAAATATG 59.739 52.381 5.01 1.80 0.00 1.78
3745 4430 4.703897 CAAATATGGAAGTAGGCCGAAGA 58.296 43.478 0.00 0.00 0.00 2.87
3746 4431 4.608948 AATATGGAAGTAGGCCGAAGAG 57.391 45.455 0.00 0.00 0.00 2.85
3747 4432 0.466124 ATGGAAGTAGGCCGAAGAGC 59.534 55.000 0.00 0.00 0.00 4.09
3755 4440 4.087892 GCCGAAGAGCCTGCCTGA 62.088 66.667 0.00 0.00 0.00 3.86
3756 4441 2.906458 CCGAAGAGCCTGCCTGAT 59.094 61.111 0.00 0.00 0.00 2.90
3757 4442 1.222936 CCGAAGAGCCTGCCTGATT 59.777 57.895 0.00 0.00 0.00 2.57
3758 4443 0.393537 CCGAAGAGCCTGCCTGATTT 60.394 55.000 0.00 0.00 0.00 2.17
3759 4444 1.134401 CCGAAGAGCCTGCCTGATTTA 60.134 52.381 0.00 0.00 0.00 1.40
3760 4445 2.208431 CGAAGAGCCTGCCTGATTTAG 58.792 52.381 0.00 0.00 0.00 1.85
3761 4446 1.946081 GAAGAGCCTGCCTGATTTAGC 59.054 52.381 0.00 0.00 0.00 3.09
3762 4447 1.211456 AGAGCCTGCCTGATTTAGCT 58.789 50.000 0.00 0.00 0.00 3.32
3763 4448 1.563410 AGAGCCTGCCTGATTTAGCTT 59.437 47.619 0.00 0.00 0.00 3.74
3764 4449 1.674962 GAGCCTGCCTGATTTAGCTTG 59.325 52.381 0.00 0.00 0.00 4.01
3765 4450 0.101939 GCCTGCCTGATTTAGCTTGC 59.898 55.000 0.00 0.00 0.00 4.01
3766 4451 1.466856 CCTGCCTGATTTAGCTTGCA 58.533 50.000 0.00 0.00 0.00 4.08
3767 4452 1.133790 CCTGCCTGATTTAGCTTGCAC 59.866 52.381 0.00 0.00 0.00 4.57
3768 4453 0.804364 TGCCTGATTTAGCTTGCACG 59.196 50.000 0.00 0.00 0.00 5.34
3769 4454 0.524180 GCCTGATTTAGCTTGCACGC 60.524 55.000 7.16 7.16 0.00 5.34
3770 4455 0.804364 CCTGATTTAGCTTGCACGCA 59.196 50.000 18.25 0.50 0.00 5.24
3771 4456 1.466360 CCTGATTTAGCTTGCACGCAC 60.466 52.381 18.25 4.03 0.00 5.34
3772 4457 0.165727 TGATTTAGCTTGCACGCACG 59.834 50.000 18.25 0.00 0.00 5.34
3773 4458 0.521242 GATTTAGCTTGCACGCACGG 60.521 55.000 18.25 0.00 0.00 4.94
3774 4459 2.527547 ATTTAGCTTGCACGCACGGC 62.528 55.000 18.25 7.76 0.00 5.68
3781 4466 3.436055 GCACGCACGGCCCATTTA 61.436 61.111 0.00 0.00 0.00 1.40
3782 4467 2.983930 GCACGCACGGCCCATTTAA 61.984 57.895 0.00 0.00 0.00 1.52
3783 4468 1.136565 CACGCACGGCCCATTTAAG 59.863 57.895 0.00 0.00 0.00 1.85
3784 4469 1.003112 ACGCACGGCCCATTTAAGA 60.003 52.632 0.00 0.00 0.00 2.10
3785 4470 0.393808 ACGCACGGCCCATTTAAGAT 60.394 50.000 0.00 0.00 0.00 2.40
3786 4471 0.307760 CGCACGGCCCATTTAAGATC 59.692 55.000 0.00 0.00 0.00 2.75
3787 4472 1.388547 GCACGGCCCATTTAAGATCA 58.611 50.000 0.00 0.00 0.00 2.92
3788 4473 1.065551 GCACGGCCCATTTAAGATCAC 59.934 52.381 0.00 0.00 0.00 3.06
3789 4474 2.643551 CACGGCCCATTTAAGATCACT 58.356 47.619 0.00 0.00 0.00 3.41
3790 4475 2.614057 CACGGCCCATTTAAGATCACTC 59.386 50.000 0.00 0.00 0.00 3.51
3791 4476 2.505819 ACGGCCCATTTAAGATCACTCT 59.494 45.455 0.00 0.00 0.00 3.24
3792 4477 3.134458 CGGCCCATTTAAGATCACTCTC 58.866 50.000 0.00 0.00 0.00 3.20
3793 4478 3.432186 CGGCCCATTTAAGATCACTCTCA 60.432 47.826 0.00 0.00 0.00 3.27
3794 4479 4.723309 GGCCCATTTAAGATCACTCTCAT 58.277 43.478 0.00 0.00 0.00 2.90
3795 4480 4.759183 GGCCCATTTAAGATCACTCTCATC 59.241 45.833 0.00 0.00 0.00 2.92
3796 4481 4.450419 GCCCATTTAAGATCACTCTCATCG 59.550 45.833 0.00 0.00 0.00 3.84
3797 4482 5.605534 CCCATTTAAGATCACTCTCATCGT 58.394 41.667 0.00 0.00 0.00 3.73
3798 4483 6.051717 CCCATTTAAGATCACTCTCATCGTT 58.948 40.000 0.00 0.00 0.00 3.85
3799 4484 6.201806 CCCATTTAAGATCACTCTCATCGTTC 59.798 42.308 0.00 0.00 0.00 3.95
3800 4485 6.758416 CCATTTAAGATCACTCTCATCGTTCA 59.242 38.462 0.00 0.00 0.00 3.18
3801 4486 7.042858 CCATTTAAGATCACTCTCATCGTTCAG 60.043 40.741 0.00 0.00 0.00 3.02
3802 4487 3.435105 AGATCACTCTCATCGTTCAGC 57.565 47.619 0.00 0.00 0.00 4.26
3803 4488 2.757314 AGATCACTCTCATCGTTCAGCA 59.243 45.455 0.00 0.00 0.00 4.41
3804 4489 2.643933 TCACTCTCATCGTTCAGCAG 57.356 50.000 0.00 0.00 0.00 4.24
3805 4490 2.162681 TCACTCTCATCGTTCAGCAGA 58.837 47.619 0.00 0.00 0.00 4.26
3806 4491 2.757314 TCACTCTCATCGTTCAGCAGAT 59.243 45.455 0.00 0.00 0.00 2.90
3807 4492 2.858941 CACTCTCATCGTTCAGCAGATG 59.141 50.000 0.00 0.00 43.99 2.90
3808 4493 1.859703 CTCTCATCGTTCAGCAGATGC 59.140 52.381 0.00 0.00 42.76 3.91
3825 4510 4.856801 CGCCCGGGACCTCCAATG 62.857 72.222 29.31 0.00 37.91 2.82
3826 4511 3.728373 GCCCGGGACCTCCAATGT 61.728 66.667 29.31 0.00 37.91 2.71
3827 4512 2.272146 CCCGGGACCTCCAATGTG 59.728 66.667 18.48 0.00 37.91 3.21
3828 4513 2.297895 CCCGGGACCTCCAATGTGA 61.298 63.158 18.48 0.00 37.91 3.58
3829 4514 1.078426 CCGGGACCTCCAATGTGAC 60.078 63.158 0.00 0.00 37.91 3.67
3830 4515 1.447838 CGGGACCTCCAATGTGACG 60.448 63.158 0.00 0.00 37.91 4.35
3831 4516 1.745489 GGGACCTCCAATGTGACGC 60.745 63.158 0.00 0.00 37.91 5.19
3832 4517 2.100631 GGACCTCCAATGTGACGCG 61.101 63.158 3.53 3.53 35.64 6.01
3833 4518 2.740714 GACCTCCAATGTGACGCGC 61.741 63.158 5.73 0.00 0.00 6.86
3834 4519 2.434884 CCTCCAATGTGACGCGCT 60.435 61.111 5.73 0.00 0.00 5.92
3835 4520 2.456119 CCTCCAATGTGACGCGCTC 61.456 63.158 5.73 3.58 0.00 5.03
3836 4521 1.446792 CTCCAATGTGACGCGCTCT 60.447 57.895 5.73 0.00 0.00 4.09
3837 4522 1.690283 CTCCAATGTGACGCGCTCTG 61.690 60.000 5.73 0.00 0.00 3.35
3838 4523 2.097160 CAATGTGACGCGCTCTGC 59.903 61.111 5.73 1.88 41.47 4.26
3849 4534 4.900154 GCTCTGCGTCTAGTTGCT 57.100 55.556 9.68 0.00 0.00 3.91
3850 4535 2.367844 GCTCTGCGTCTAGTTGCTG 58.632 57.895 9.68 9.17 0.00 4.41
3851 4536 0.389166 GCTCTGCGTCTAGTTGCTGT 60.389 55.000 9.68 0.00 0.00 4.40
3852 4537 1.135373 GCTCTGCGTCTAGTTGCTGTA 60.135 52.381 9.68 1.52 0.00 2.74
3853 4538 2.480416 GCTCTGCGTCTAGTTGCTGTAT 60.480 50.000 9.68 0.00 0.00 2.29
3854 4539 3.243101 GCTCTGCGTCTAGTTGCTGTATA 60.243 47.826 9.68 0.00 0.00 1.47
3855 4540 4.557695 GCTCTGCGTCTAGTTGCTGTATAT 60.558 45.833 9.68 0.00 0.00 0.86
3856 4541 4.860072 TCTGCGTCTAGTTGCTGTATATG 58.140 43.478 9.68 0.00 0.00 1.78
3857 4542 3.381045 TGCGTCTAGTTGCTGTATATGC 58.619 45.455 9.68 0.00 0.00 3.14
3858 4543 2.405357 GCGTCTAGTTGCTGTATATGCG 59.595 50.000 2.36 0.00 0.00 4.73
3859 4544 2.980476 CGTCTAGTTGCTGTATATGCGG 59.020 50.000 0.00 0.00 0.00 5.69
3860 4545 3.550233 CGTCTAGTTGCTGTATATGCGGT 60.550 47.826 1.37 0.00 0.00 5.68
3861 4546 3.982058 GTCTAGTTGCTGTATATGCGGTC 59.018 47.826 1.37 0.00 0.00 4.79
3862 4547 2.979814 AGTTGCTGTATATGCGGTCA 57.020 45.000 1.37 0.00 0.00 4.02
3863 4548 2.550978 AGTTGCTGTATATGCGGTCAC 58.449 47.619 1.37 0.00 0.00 3.67
3864 4549 1.257936 GTTGCTGTATATGCGGTCACG 59.742 52.381 1.37 0.00 44.63 4.35
3865 4550 0.249280 TGCTGTATATGCGGTCACGG 60.249 55.000 1.37 0.00 41.36 4.94
3866 4551 0.944311 GCTGTATATGCGGTCACGGG 60.944 60.000 1.37 0.00 41.36 5.28
3867 4552 0.319555 CTGTATATGCGGTCACGGGG 60.320 60.000 0.00 0.00 41.36 5.73
3868 4553 0.756070 TGTATATGCGGTCACGGGGA 60.756 55.000 0.00 0.00 41.36 4.81
3869 4554 0.606604 GTATATGCGGTCACGGGGAT 59.393 55.000 0.00 0.00 41.36 3.85
3870 4555 1.001633 GTATATGCGGTCACGGGGATT 59.998 52.381 0.00 0.00 41.36 3.01
3871 4556 0.034896 ATATGCGGTCACGGGGATTC 59.965 55.000 0.00 0.00 41.36 2.52
3872 4557 2.358193 TATGCGGTCACGGGGATTCG 62.358 60.000 2.33 2.33 41.36 3.34
3873 4558 4.137872 GCGGTCACGGGGATTCGA 62.138 66.667 9.54 0.00 41.36 3.71
3874 4559 2.574929 CGGTCACGGGGATTCGAA 59.425 61.111 0.00 0.00 36.18 3.71
3875 4560 1.808390 CGGTCACGGGGATTCGAAC 60.808 63.158 0.00 0.00 36.18 3.95
3876 4561 1.294138 GGTCACGGGGATTCGAACA 59.706 57.895 0.00 0.00 0.00 3.18
3877 4562 1.017701 GGTCACGGGGATTCGAACAC 61.018 60.000 0.00 0.00 0.00 3.32
3878 4563 0.320073 GTCACGGGGATTCGAACACA 60.320 55.000 0.00 0.00 0.00 3.72
3879 4564 0.611200 TCACGGGGATTCGAACACAT 59.389 50.000 0.00 0.00 0.00 3.21
3880 4565 0.726827 CACGGGGATTCGAACACATG 59.273 55.000 0.00 0.00 0.00 3.21
3881 4566 0.611200 ACGGGGATTCGAACACATGA 59.389 50.000 0.00 0.00 0.00 3.07
3882 4567 1.209504 ACGGGGATTCGAACACATGAT 59.790 47.619 0.00 0.00 0.00 2.45
3883 4568 1.867233 CGGGGATTCGAACACATGATC 59.133 52.381 0.00 0.00 0.00 2.92
3884 4569 1.867233 GGGGATTCGAACACATGATCG 59.133 52.381 0.00 6.84 40.92 3.69
3885 4570 2.483013 GGGGATTCGAACACATGATCGA 60.483 50.000 9.83 9.83 45.32 3.59
3886 4571 2.540101 GGGATTCGAACACATGATCGAC 59.460 50.000 13.02 4.15 46.34 4.20
3887 4572 3.448686 GGATTCGAACACATGATCGACT 58.551 45.455 13.02 8.64 46.34 4.18
3888 4573 3.243877 GGATTCGAACACATGATCGACTG 59.756 47.826 13.02 0.66 46.34 3.51
3889 4574 1.629013 TCGAACACATGATCGACTGC 58.371 50.000 9.83 0.00 42.87 4.40
3890 4575 0.647410 CGAACACATGATCGACTGCC 59.353 55.000 5.70 0.00 41.91 4.85
3891 4576 1.725641 GAACACATGATCGACTGCCA 58.274 50.000 0.00 0.00 0.00 4.92
3892 4577 2.283298 GAACACATGATCGACTGCCAT 58.717 47.619 0.00 0.00 0.00 4.40
3893 4578 3.457234 GAACACATGATCGACTGCCATA 58.543 45.455 0.00 0.00 0.00 2.74
3894 4579 2.826428 ACACATGATCGACTGCCATAC 58.174 47.619 0.00 0.00 0.00 2.39
3895 4580 2.168313 ACACATGATCGACTGCCATACA 59.832 45.455 0.00 0.00 0.00 2.29
3896 4581 2.541346 CACATGATCGACTGCCATACAC 59.459 50.000 0.00 0.00 0.00 2.90
3897 4582 1.788886 CATGATCGACTGCCATACACG 59.211 52.381 0.00 0.00 0.00 4.49
3898 4583 1.099689 TGATCGACTGCCATACACGA 58.900 50.000 0.00 0.00 37.39 4.35
3899 4584 1.202256 TGATCGACTGCCATACACGAC 60.202 52.381 0.00 0.00 35.91 4.34
3900 4585 0.248498 ATCGACTGCCATACACGACG 60.248 55.000 0.00 0.00 35.91 5.12
3901 4586 1.154093 CGACTGCCATACACGACGT 60.154 57.895 0.00 0.00 0.00 4.34
3902 4587 1.403225 CGACTGCCATACACGACGTG 61.403 60.000 25.72 25.72 39.75 4.49
3904 4589 0.032952 ACTGCCATACACGACGTGTT 59.967 50.000 35.71 21.22 45.08 3.32
3905 4590 0.713883 CTGCCATACACGACGTGTTC 59.286 55.000 35.71 22.16 45.08 3.18
3906 4591 0.668096 TGCCATACACGACGTGTTCC 60.668 55.000 35.71 21.39 45.08 3.62
3907 4592 0.389426 GCCATACACGACGTGTTCCT 60.389 55.000 35.71 19.35 45.08 3.36
3908 4593 1.135315 GCCATACACGACGTGTTCCTA 60.135 52.381 35.71 20.14 45.08 2.94
3909 4594 2.523015 CCATACACGACGTGTTCCTAC 58.477 52.381 35.71 0.00 45.08 3.18
3910 4595 2.163010 CCATACACGACGTGTTCCTACT 59.837 50.000 35.71 13.99 45.08 2.57
3911 4596 3.374988 CCATACACGACGTGTTCCTACTA 59.625 47.826 35.71 18.31 45.08 1.82
3912 4597 4.495349 CCATACACGACGTGTTCCTACTAG 60.495 50.000 35.71 16.97 45.08 2.57
3913 4598 1.198637 ACACGACGTGTTCCTACTAGC 59.801 52.381 27.20 0.00 45.08 3.42
3914 4599 1.467734 CACGACGTGTTCCTACTAGCT 59.532 52.381 19.77 0.00 0.00 3.32
3915 4600 1.467734 ACGACGTGTTCCTACTAGCTG 59.532 52.381 0.00 0.00 0.00 4.24
3916 4601 1.736126 CGACGTGTTCCTACTAGCTGA 59.264 52.381 0.00 0.00 0.00 4.26
3917 4602 2.223066 CGACGTGTTCCTACTAGCTGAG 60.223 54.545 0.00 0.00 0.00 3.35
3918 4603 1.473278 ACGTGTTCCTACTAGCTGAGC 59.527 52.381 0.00 0.00 0.00 4.26
3919 4604 1.746220 CGTGTTCCTACTAGCTGAGCT 59.254 52.381 13.25 13.25 43.41 4.09
3920 4605 2.943690 CGTGTTCCTACTAGCTGAGCTA 59.056 50.000 14.25 14.25 40.44 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.851658 AATTGAACAACGGTTGCAGC 58.148 45.000 20.20 10.39 37.36 5.25
2 3 3.543852 GCAAAATTGAACAACGGTTGCAG 60.544 43.478 20.20 0.00 39.65 4.41
4 5 2.607180 AGCAAAATTGAACAACGGTTGC 59.393 40.909 20.20 16.62 37.36 4.17
5 6 3.001127 CCAGCAAAATTGAACAACGGTTG 59.999 43.478 18.81 18.81 37.36 3.77
6 7 3.118956 TCCAGCAAAATTGAACAACGGTT 60.119 39.130 0.00 0.00 40.76 4.44
7 8 2.428890 TCCAGCAAAATTGAACAACGGT 59.571 40.909 0.00 0.00 0.00 4.83
8 9 3.090952 TCCAGCAAAATTGAACAACGG 57.909 42.857 0.00 0.00 0.00 4.44
9 10 3.245048 GGTTCCAGCAAAATTGAACAACG 59.755 43.478 0.00 0.00 39.02 4.10
10 11 3.245048 CGGTTCCAGCAAAATTGAACAAC 59.755 43.478 0.00 0.00 39.02 3.32
11 12 3.452474 CGGTTCCAGCAAAATTGAACAA 58.548 40.909 0.00 0.00 39.02 2.83
12 13 2.223923 CCGGTTCCAGCAAAATTGAACA 60.224 45.455 0.00 0.00 39.02 3.18
13 14 2.403259 CCGGTTCCAGCAAAATTGAAC 58.597 47.619 0.00 0.00 37.08 3.18
14 15 1.342819 CCCGGTTCCAGCAAAATTGAA 59.657 47.619 0.00 0.00 0.00 2.69
15 16 0.965439 CCCGGTTCCAGCAAAATTGA 59.035 50.000 0.00 0.00 0.00 2.57
16 17 0.670239 GCCCGGTTCCAGCAAAATTG 60.670 55.000 0.00 0.00 0.00 2.32
17 18 1.118356 TGCCCGGTTCCAGCAAAATT 61.118 50.000 0.00 0.00 32.56 1.82
18 19 1.118356 TTGCCCGGTTCCAGCAAAAT 61.118 50.000 11.95 0.00 43.14 1.82
19 20 1.758514 TTGCCCGGTTCCAGCAAAA 60.759 52.632 11.95 0.00 43.14 2.44
20 21 2.123683 TTGCCCGGTTCCAGCAAA 60.124 55.556 11.95 0.00 43.14 3.68
22 23 1.118356 AAAATTGCCCGGTTCCAGCA 61.118 50.000 0.00 0.00 33.97 4.41
23 24 0.034756 AAAAATTGCCCGGTTCCAGC 59.965 50.000 0.00 0.00 0.00 4.85
48 49 3.541632 GGAAAAGCTCCATGGTCGATTA 58.458 45.455 12.58 0.00 44.67 1.75
70 71 4.309099 TCCAGCAAAAGCAAATTTAGCAG 58.691 39.130 12.88 4.01 0.00 4.24
160 161 1.445518 CTTTTTGCTGCCCCGGTTT 59.554 52.632 0.00 0.00 0.00 3.27
188 189 4.457496 CTCCATCGCCGGCAGTGT 62.457 66.667 28.98 5.55 0.00 3.55
275 276 7.870445 ACAACGGTTGTAGCAAATTTTGATAAT 59.130 29.630 24.02 0.00 43.27 1.28
276 277 7.203910 ACAACGGTTGTAGCAAATTTTGATAA 58.796 30.769 24.02 0.00 43.27 1.75
278 279 5.596845 ACAACGGTTGTAGCAAATTTTGAT 58.403 33.333 24.02 9.21 43.27 2.57
313 315 4.686554 GCAAAAATGCAAATACACCGGTTA 59.313 37.500 2.97 1.04 34.41 2.85
391 395 2.951475 AAACTGAGCGCCCGTTCCAA 62.951 55.000 2.29 0.00 0.00 3.53
406 410 2.024414 GTCACCTGTTCCAGCAAAACT 58.976 47.619 0.00 0.00 0.00 2.66
407 411 1.067060 GGTCACCTGTTCCAGCAAAAC 59.933 52.381 0.00 0.00 0.00 2.43
524 528 3.853330 CTGGTGGCGACGATTGCG 61.853 66.667 0.00 0.00 44.79 4.85
660 715 1.135689 GCGCGACCAACTTCAAATCAT 60.136 47.619 12.10 0.00 0.00 2.45
772 1018 4.349663 GCATGTGTTGCCGTTAGATTTA 57.650 40.909 0.00 0.00 46.15 1.40
773 1019 3.216147 GCATGTGTTGCCGTTAGATTT 57.784 42.857 0.00 0.00 46.15 2.17
790 1036 0.168788 CAACCGTTCGATGCAAGCAT 59.831 50.000 7.35 7.35 39.69 3.79
916 1165 2.183679 GAAGGAAGAGGAGGCAGAGAA 58.816 52.381 0.00 0.00 0.00 2.87
917 1166 1.077828 TGAAGGAAGAGGAGGCAGAGA 59.922 52.381 0.00 0.00 0.00 3.10
1465 1715 7.828712 ACATACTAAGTTGTAGAAGGTGAGAC 58.171 38.462 0.00 0.00 0.00 3.36
1483 1733 6.985645 ACGGGCGATATTGTAAAAACATACTA 59.014 34.615 0.00 0.00 0.00 1.82
1484 1734 5.818857 ACGGGCGATATTGTAAAAACATACT 59.181 36.000 0.00 0.00 0.00 2.12
1485 1735 6.051646 ACGGGCGATATTGTAAAAACATAC 57.948 37.500 0.00 0.00 0.00 2.39
1503 1753 2.962089 CAAGCATGCATAAACGGGC 58.038 52.632 21.98 0.00 0.00 6.13
1581 1831 4.332543 TGTCTTCAGTTTACAAGCTGTGTG 59.667 41.667 10.59 0.00 41.89 3.82
1790 2040 5.230936 CGATATAGCATTCTAAGTGCATCCG 59.769 44.000 0.00 0.00 44.87 4.18
1791 2041 6.102663 ACGATATAGCATTCTAAGTGCATCC 58.897 40.000 0.00 0.00 44.87 3.51
1854 2104 5.664294 TCAATTGCTTATGATTGCAGGTT 57.336 34.783 0.00 0.00 40.46 3.50
1922 2172 2.050269 CAGACTCCCGAACTGGTGT 58.950 57.895 0.00 0.00 34.92 4.16
2099 2349 0.104672 TGGGGGTGAAGACCAGAAGA 60.105 55.000 0.00 0.00 45.25 2.87
2165 2415 2.897326 GGCAAAAAGGGTAATGTGACCT 59.103 45.455 0.00 0.00 39.66 3.85
2178 2428 7.913674 AGTAGAAGTATGAGAAGGCAAAAAG 57.086 36.000 0.00 0.00 0.00 2.27
2549 2799 6.317088 CCGTATAACATATACTACACACCCG 58.683 44.000 6.10 0.00 0.00 5.28
2655 2992 4.057432 GCATAGGTTCTTCTGAGCTCATC 58.943 47.826 18.63 4.02 0.00 2.92
2803 3140 0.746659 GTGCAGGGTTTGTCTTTGCT 59.253 50.000 0.00 0.00 35.85 3.91
2845 3182 2.366837 AGCCCGTGGATCATCCCA 60.367 61.111 0.00 0.00 35.03 4.37
2911 3248 0.105039 GCTTGCTCGCTAGGTACCAT 59.895 55.000 15.94 1.66 0.00 3.55
2954 3291 5.190528 AGGTCATTACATGGACTCATCACTT 59.809 40.000 0.00 0.00 34.49 3.16
3197 3535 1.691434 ACAACCATTCGTGGCCAATTT 59.309 42.857 7.24 0.00 0.00 1.82
3224 3562 2.635714 CACCAGAGCATCATACTTGCA 58.364 47.619 0.00 0.00 42.62 4.08
3225 3563 1.332997 GCACCAGAGCATCATACTTGC 59.667 52.381 0.00 0.00 37.82 4.01
3226 3564 2.915349 AGCACCAGAGCATCATACTTG 58.085 47.619 0.00 0.00 37.82 3.16
3227 3565 4.970860 ATAGCACCAGAGCATCATACTT 57.029 40.909 0.00 0.00 37.82 2.24
3228 3566 4.081752 GCTATAGCACCAGAGCATCATACT 60.082 45.833 20.01 0.00 41.59 2.12
3229 3567 4.180057 GCTATAGCACCAGAGCATCATAC 58.820 47.826 20.01 0.00 41.59 2.39
3230 3568 4.462508 GCTATAGCACCAGAGCATCATA 57.537 45.455 20.01 0.00 41.59 2.15
3231 3569 3.331478 GCTATAGCACCAGAGCATCAT 57.669 47.619 20.01 0.00 41.59 2.45
3232 3570 2.827800 GCTATAGCACCAGAGCATCA 57.172 50.000 20.01 0.00 41.59 3.07
3341 3990 1.875963 CCCATTGCCAGTCGTTCAC 59.124 57.895 0.00 0.00 0.00 3.18
3348 3997 2.713531 AAACGGAGCCCATTGCCAGT 62.714 55.000 0.00 0.00 42.71 4.00
3390 4042 8.992835 AAAGCTTGCATTAAGGATTAGAAAAG 57.007 30.769 0.00 0.00 36.87 2.27
3426 4080 9.041791 AGGAGGGATATAAATAGAGGGATATGA 57.958 37.037 0.00 0.00 0.00 2.15
3429 4083 8.457757 GCTAGGAGGGATATAAATAGAGGGATA 58.542 40.741 0.00 0.00 0.00 2.59
3433 4087 6.366340 TCGCTAGGAGGGATATAAATAGAGG 58.634 44.000 0.00 0.00 31.82 3.69
3438 4092 4.615513 AGCTCGCTAGGAGGGATATAAAT 58.384 43.478 9.44 0.00 43.36 1.40
3444 4098 0.105964 TTGAGCTCGCTAGGAGGGAT 60.106 55.000 9.64 0.00 43.36 3.85
3446 4100 0.753479 TCTTGAGCTCGCTAGGAGGG 60.753 60.000 9.64 0.00 43.36 4.30
3447 4101 0.667993 CTCTTGAGCTCGCTAGGAGG 59.332 60.000 9.64 0.00 43.36 4.30
3448 4102 1.603802 CTCTCTTGAGCTCGCTAGGAG 59.396 57.143 9.64 7.25 46.06 3.69
3450 4104 0.667993 CCTCTCTTGAGCTCGCTAGG 59.332 60.000 9.64 7.55 38.93 3.02
3451 4105 0.030638 GCCTCTCTTGAGCTCGCTAG 59.969 60.000 9.64 6.61 38.93 3.42
3452 4106 0.395036 AGCCTCTCTTGAGCTCGCTA 60.395 55.000 9.64 0.00 38.93 4.26
3454 4108 1.226945 GAGCCTCTCTTGAGCTCGC 60.227 63.158 9.64 4.24 38.93 5.03
3456 4110 1.735369 CGTTGAGCCTCTCTTGAGCTC 60.735 57.143 6.82 6.82 40.51 4.09
3460 4114 3.469008 TTTTCGTTGAGCCTCTCTTGA 57.531 42.857 0.00 0.00 0.00 3.02
3486 4171 1.912220 CCGAGGGCCCATCTTGTAA 59.088 57.895 27.56 0.00 0.00 2.41
3502 4187 5.261209 TCATGAATTAGGAAATTTGGCCG 57.739 39.130 0.00 0.00 35.41 6.13
3513 4198 5.334414 GCTATTCCGTTGCTCATGAATTAGG 60.334 44.000 0.00 0.00 0.00 2.69
3531 4216 4.627058 GCAAAGTCCTAGAGAGGCTATTC 58.373 47.826 0.00 0.00 43.40 1.75
3535 4220 0.820871 CGCAAAGTCCTAGAGAGGCT 59.179 55.000 0.00 0.00 43.40 4.58
3536 4221 0.808060 GCGCAAAGTCCTAGAGAGGC 60.808 60.000 0.30 0.00 43.40 4.70
3537 4222 0.532573 TGCGCAAAGTCCTAGAGAGG 59.467 55.000 8.16 0.00 45.35 3.69
3538 4223 1.474478 TCTGCGCAAAGTCCTAGAGAG 59.526 52.381 13.05 0.00 0.00 3.20
3539 4224 1.545841 TCTGCGCAAAGTCCTAGAGA 58.454 50.000 13.05 0.00 0.00 3.10
3540 4225 2.159184 TCATCTGCGCAAAGTCCTAGAG 60.159 50.000 13.05 0.00 0.00 2.43
3541 4226 1.824852 TCATCTGCGCAAAGTCCTAGA 59.175 47.619 13.05 2.27 0.00 2.43
3542 4227 2.200067 CTCATCTGCGCAAAGTCCTAG 58.800 52.381 13.05 0.00 0.00 3.02
3543 4228 1.134699 CCTCATCTGCGCAAAGTCCTA 60.135 52.381 13.05 0.00 0.00 2.94
3544 4229 0.392193 CCTCATCTGCGCAAAGTCCT 60.392 55.000 13.05 0.00 0.00 3.85
3545 4230 0.674895 ACCTCATCTGCGCAAAGTCC 60.675 55.000 13.05 0.00 0.00 3.85
3547 4232 2.698855 ATACCTCATCTGCGCAAAGT 57.301 45.000 13.05 5.23 0.00 2.66
3548 4233 4.371786 TCTTATACCTCATCTGCGCAAAG 58.628 43.478 13.05 8.22 0.00 2.77
3549 4234 4.400529 TCTTATACCTCATCTGCGCAAA 57.599 40.909 13.05 0.00 0.00 3.68
3550 4235 4.400529 TTCTTATACCTCATCTGCGCAA 57.599 40.909 13.05 2.72 0.00 4.85
3554 4239 5.277731 GCAGCTTTTCTTATACCTCATCTGC 60.278 44.000 0.00 0.00 35.89 4.26
3557 4242 5.277058 CGTGCAGCTTTTCTTATACCTCATC 60.277 44.000 0.00 0.00 0.00 2.92
3559 4244 3.932710 CGTGCAGCTTTTCTTATACCTCA 59.067 43.478 0.00 0.00 0.00 3.86
3567 4252 0.110056 CATCGCGTGCAGCTTTTCTT 60.110 50.000 5.77 0.00 45.59 2.52
3570 4255 1.081906 CACATCGCGTGCAGCTTTT 60.082 52.632 5.77 0.00 45.59 2.27
3581 4266 1.667212 TGATGATTGCTGTCACATCGC 59.333 47.619 0.00 0.00 41.04 4.58
3582 4267 4.093850 TCTTTGATGATTGCTGTCACATCG 59.906 41.667 0.00 0.00 41.04 3.84
3633 4318 1.526041 CGATGTGCTATCTGCTGAAGC 59.474 52.381 15.68 15.68 43.37 3.86
3634 4319 2.819115 ACGATGTGCTATCTGCTGAAG 58.181 47.619 0.00 0.00 43.37 3.02
3635 4320 2.967599 ACGATGTGCTATCTGCTGAA 57.032 45.000 0.00 0.00 43.37 3.02
3636 4321 4.590850 ATTACGATGTGCTATCTGCTGA 57.409 40.909 0.00 0.00 43.37 4.26
3637 4322 5.703876 TCTATTACGATGTGCTATCTGCTG 58.296 41.667 0.00 0.00 43.37 4.41
3638 4323 5.966742 TCTATTACGATGTGCTATCTGCT 57.033 39.130 0.00 0.00 43.37 4.24
3639 4324 6.153067 ACTTCTATTACGATGTGCTATCTGC 58.847 40.000 0.00 0.00 43.25 4.26
3640 4325 7.363431 TGACTTCTATTACGATGTGCTATCTG 58.637 38.462 0.00 0.00 0.00 2.90
3641 4326 7.511959 TGACTTCTATTACGATGTGCTATCT 57.488 36.000 0.00 0.00 0.00 1.98
3642 4327 8.749841 ATTGACTTCTATTACGATGTGCTATC 57.250 34.615 0.00 0.00 0.00 2.08
3643 4328 9.547753 AAATTGACTTCTATTACGATGTGCTAT 57.452 29.630 0.00 0.00 0.00 2.97
3644 4329 8.942338 AAATTGACTTCTATTACGATGTGCTA 57.058 30.769 0.00 0.00 0.00 3.49
3645 4330 7.011482 GGAAATTGACTTCTATTACGATGTGCT 59.989 37.037 0.00 0.00 0.00 4.40
3646 4331 7.126398 GGAAATTGACTTCTATTACGATGTGC 58.874 38.462 0.00 0.00 0.00 4.57
3647 4332 7.279981 TGGGAAATTGACTTCTATTACGATGTG 59.720 37.037 0.00 0.00 0.00 3.21
3648 4333 7.335627 TGGGAAATTGACTTCTATTACGATGT 58.664 34.615 0.00 0.00 0.00 3.06
3649 4334 7.786178 TGGGAAATTGACTTCTATTACGATG 57.214 36.000 0.00 0.00 0.00 3.84
3650 4335 8.980481 ATTGGGAAATTGACTTCTATTACGAT 57.020 30.769 0.00 0.00 0.00 3.73
3651 4336 8.801882 AATTGGGAAATTGACTTCTATTACGA 57.198 30.769 0.00 0.00 0.00 3.43
3652 4337 8.129211 GGAATTGGGAAATTGACTTCTATTACG 58.871 37.037 0.00 0.00 0.00 3.18
3653 4338 9.190317 AGGAATTGGGAAATTGACTTCTATTAC 57.810 33.333 0.00 0.00 0.00 1.89
3654 4339 9.768215 AAGGAATTGGGAAATTGACTTCTATTA 57.232 29.630 0.00 0.00 0.00 0.98
3655 4340 8.534496 CAAGGAATTGGGAAATTGACTTCTATT 58.466 33.333 0.00 0.00 0.00 1.73
3656 4341 7.364144 GCAAGGAATTGGGAAATTGACTTCTAT 60.364 37.037 0.00 0.00 0.00 1.98
3657 4342 6.071391 GCAAGGAATTGGGAAATTGACTTCTA 60.071 38.462 0.00 0.00 0.00 2.10
3658 4343 5.279657 GCAAGGAATTGGGAAATTGACTTCT 60.280 40.000 0.00 0.00 0.00 2.85
3659 4344 4.931601 GCAAGGAATTGGGAAATTGACTTC 59.068 41.667 0.00 0.00 0.00 3.01
3660 4345 4.347583 TGCAAGGAATTGGGAAATTGACTT 59.652 37.500 0.00 0.00 0.00 3.01
3661 4346 3.903090 TGCAAGGAATTGGGAAATTGACT 59.097 39.130 0.00 0.00 0.00 3.41
3662 4347 4.270245 TGCAAGGAATTGGGAAATTGAC 57.730 40.909 0.00 0.00 0.00 3.18
3663 4348 5.502089 AATGCAAGGAATTGGGAAATTGA 57.498 34.783 0.00 0.00 0.00 2.57
3664 4349 6.431852 AGAAAATGCAAGGAATTGGGAAATTG 59.568 34.615 0.00 0.00 0.00 2.32
3665 4350 6.545567 AGAAAATGCAAGGAATTGGGAAATT 58.454 32.000 0.00 0.00 0.00 1.82
3666 4351 6.130692 AGAAAATGCAAGGAATTGGGAAAT 57.869 33.333 0.00 0.00 0.00 2.17
3667 4352 5.565455 AGAAAATGCAAGGAATTGGGAAA 57.435 34.783 0.00 0.00 0.00 3.13
3668 4353 6.678568 TTAGAAAATGCAAGGAATTGGGAA 57.321 33.333 0.00 0.00 0.00 3.97
3669 4354 6.127083 GGATTAGAAAATGCAAGGAATTGGGA 60.127 38.462 0.00 0.00 33.86 4.37
3670 4355 6.051074 GGATTAGAAAATGCAAGGAATTGGG 58.949 40.000 0.00 0.00 33.86 4.12
3671 4356 6.759827 CAGGATTAGAAAATGCAAGGAATTGG 59.240 38.462 0.00 0.00 35.98 3.16
3672 4357 6.257193 GCAGGATTAGAAAATGCAAGGAATTG 59.743 38.462 0.00 0.00 35.98 2.32
3673 4358 6.070653 TGCAGGATTAGAAAATGCAAGGAATT 60.071 34.615 0.00 0.00 43.41 2.17
3674 4359 5.422970 TGCAGGATTAGAAAATGCAAGGAAT 59.577 36.000 0.00 0.00 43.41 3.01
3675 4360 4.771577 TGCAGGATTAGAAAATGCAAGGAA 59.228 37.500 0.00 0.00 43.41 3.36
3676 4361 4.343231 TGCAGGATTAGAAAATGCAAGGA 58.657 39.130 0.00 0.00 43.41 3.36
3677 4362 4.724074 TGCAGGATTAGAAAATGCAAGG 57.276 40.909 0.00 0.00 43.41 3.61
3681 4366 6.016443 AGCTTAGATGCAGGATTAGAAAATGC 60.016 38.462 0.00 0.00 37.40 3.56
3682 4367 7.507733 AGCTTAGATGCAGGATTAGAAAATG 57.492 36.000 0.00 0.00 34.99 2.32
3683 4368 7.559170 ACAAGCTTAGATGCAGGATTAGAAAAT 59.441 33.333 0.00 0.00 34.99 1.82
3684 4369 6.886459 ACAAGCTTAGATGCAGGATTAGAAAA 59.114 34.615 0.00 0.00 34.99 2.29
3685 4370 6.317140 CACAAGCTTAGATGCAGGATTAGAAA 59.683 38.462 0.00 0.00 34.99 2.52
3686 4371 5.819379 CACAAGCTTAGATGCAGGATTAGAA 59.181 40.000 0.00 0.00 34.99 2.10
3687 4372 5.363101 CACAAGCTTAGATGCAGGATTAGA 58.637 41.667 0.00 0.00 34.99 2.10
3688 4373 4.024218 GCACAAGCTTAGATGCAGGATTAG 60.024 45.833 19.37 0.00 38.00 1.73
3689 4374 3.879295 GCACAAGCTTAGATGCAGGATTA 59.121 43.478 19.37 0.00 38.00 1.75
3690 4375 2.686915 GCACAAGCTTAGATGCAGGATT 59.313 45.455 19.37 0.00 38.00 3.01
3691 4376 2.295885 GCACAAGCTTAGATGCAGGAT 58.704 47.619 19.37 0.00 38.00 3.24
3692 4377 1.742761 GCACAAGCTTAGATGCAGGA 58.257 50.000 19.37 0.00 38.00 3.86
3693 4378 0.376152 CGCACAAGCTTAGATGCAGG 59.624 55.000 22.27 9.09 37.97 4.85
3694 4379 1.061711 GTCGCACAAGCTTAGATGCAG 59.938 52.381 22.27 16.57 37.97 4.41
3695 4380 1.078709 GTCGCACAAGCTTAGATGCA 58.921 50.000 22.27 11.44 37.97 3.96
3696 4381 0.025513 CGTCGCACAAGCTTAGATGC 59.974 55.000 15.95 15.95 39.10 3.91
3697 4382 1.350193 ACGTCGCACAAGCTTAGATG 58.650 50.000 0.00 4.98 39.10 2.90
3698 4383 2.094906 TGTACGTCGCACAAGCTTAGAT 60.095 45.455 0.00 0.00 39.10 1.98
3699 4384 1.267533 TGTACGTCGCACAAGCTTAGA 59.732 47.619 0.00 0.00 39.10 2.10
3700 4385 1.649171 CTGTACGTCGCACAAGCTTAG 59.351 52.381 0.00 0.00 39.10 2.18
3701 4386 1.667756 CCTGTACGTCGCACAAGCTTA 60.668 52.381 0.00 0.00 39.10 3.09
3702 4387 0.944311 CCTGTACGTCGCACAAGCTT 60.944 55.000 0.00 0.00 39.10 3.74
3703 4388 1.372997 CCTGTACGTCGCACAAGCT 60.373 57.895 0.00 0.00 39.10 3.74
3704 4389 3.011760 GCCTGTACGTCGCACAAGC 62.012 63.158 3.54 3.54 37.42 4.01
3705 4390 2.380410 GGCCTGTACGTCGCACAAG 61.380 63.158 0.00 0.00 0.00 3.16
3706 4391 2.356553 GGCCTGTACGTCGCACAA 60.357 61.111 0.00 0.00 0.00 3.33
3707 4392 2.646117 TTTGGCCTGTACGTCGCACA 62.646 55.000 3.32 0.00 0.00 4.57
3708 4393 1.296056 ATTTGGCCTGTACGTCGCAC 61.296 55.000 3.32 0.00 0.00 5.34
3709 4394 0.246910 TATTTGGCCTGTACGTCGCA 59.753 50.000 3.32 0.00 0.00 5.10
3710 4395 1.260561 CATATTTGGCCTGTACGTCGC 59.739 52.381 3.32 0.00 0.00 5.19
3711 4396 1.864711 CCATATTTGGCCTGTACGTCG 59.135 52.381 3.32 0.00 35.85 5.12
3712 4397 3.188159 TCCATATTTGGCCTGTACGTC 57.812 47.619 3.32 0.00 43.29 4.34
3713 4398 3.054655 ACTTCCATATTTGGCCTGTACGT 60.055 43.478 3.32 0.00 43.29 3.57
3714 4399 3.541632 ACTTCCATATTTGGCCTGTACG 58.458 45.455 3.32 0.00 43.29 3.67
3715 4400 5.063880 CCTACTTCCATATTTGGCCTGTAC 58.936 45.833 3.32 0.00 43.29 2.90
3716 4401 4.445735 GCCTACTTCCATATTTGGCCTGTA 60.446 45.833 3.32 0.00 43.29 2.74
3717 4402 3.688414 GCCTACTTCCATATTTGGCCTGT 60.688 47.826 3.32 0.00 43.29 4.00
3718 4403 2.887152 GCCTACTTCCATATTTGGCCTG 59.113 50.000 3.32 0.00 43.29 4.85
3719 4404 3.229697 GCCTACTTCCATATTTGGCCT 57.770 47.619 3.32 0.00 43.29 5.19
3721 4406 1.880027 CGGCCTACTTCCATATTTGGC 59.120 52.381 0.00 0.00 43.29 4.52
3722 4407 3.485463 TCGGCCTACTTCCATATTTGG 57.515 47.619 0.00 0.00 45.15 3.28
3723 4408 4.703897 TCTTCGGCCTACTTCCATATTTG 58.296 43.478 0.00 0.00 0.00 2.32
3724 4409 4.743955 GCTCTTCGGCCTACTTCCATATTT 60.744 45.833 0.00 0.00 0.00 1.40
3725 4410 3.244249 GCTCTTCGGCCTACTTCCATATT 60.244 47.826 0.00 0.00 0.00 1.28
3726 4411 2.300437 GCTCTTCGGCCTACTTCCATAT 59.700 50.000 0.00 0.00 0.00 1.78
3727 4412 1.687123 GCTCTTCGGCCTACTTCCATA 59.313 52.381 0.00 0.00 0.00 2.74
3728 4413 0.466124 GCTCTTCGGCCTACTTCCAT 59.534 55.000 0.00 0.00 0.00 3.41
3729 4414 1.898154 GCTCTTCGGCCTACTTCCA 59.102 57.895 0.00 0.00 0.00 3.53
3730 4415 4.838046 GCTCTTCGGCCTACTTCC 57.162 61.111 0.00 0.00 0.00 3.46
3738 4423 2.883267 AATCAGGCAGGCTCTTCGGC 62.883 60.000 0.00 0.00 38.75 5.54
3739 4424 0.393537 AAATCAGGCAGGCTCTTCGG 60.394 55.000 0.00 0.00 0.00 4.30
3740 4425 2.208431 CTAAATCAGGCAGGCTCTTCG 58.792 52.381 0.00 0.00 0.00 3.79
3741 4426 1.946081 GCTAAATCAGGCAGGCTCTTC 59.054 52.381 0.00 0.00 0.00 2.87
3742 4427 1.563410 AGCTAAATCAGGCAGGCTCTT 59.437 47.619 0.00 0.00 0.00 2.85
3743 4428 1.211456 AGCTAAATCAGGCAGGCTCT 58.789 50.000 0.00 0.00 0.00 4.09
3744 4429 1.674962 CAAGCTAAATCAGGCAGGCTC 59.325 52.381 0.00 0.00 0.00 4.70
3745 4430 1.760192 CAAGCTAAATCAGGCAGGCT 58.240 50.000 0.00 0.00 0.00 4.58
3746 4431 0.101939 GCAAGCTAAATCAGGCAGGC 59.898 55.000 0.00 0.00 0.00 4.85
3747 4432 1.133790 GTGCAAGCTAAATCAGGCAGG 59.866 52.381 0.00 0.00 31.10 4.85
3748 4433 1.202110 CGTGCAAGCTAAATCAGGCAG 60.202 52.381 0.00 0.00 31.10 4.85
3749 4434 0.804364 CGTGCAAGCTAAATCAGGCA 59.196 50.000 0.00 0.00 0.00 4.75
3750 4435 0.524180 GCGTGCAAGCTAAATCAGGC 60.524 55.000 17.84 0.00 34.05 4.85
3751 4436 0.804364 TGCGTGCAAGCTAAATCAGG 59.196 50.000 24.81 0.00 38.13 3.86
3752 4437 1.787989 CGTGCGTGCAAGCTAAATCAG 60.788 52.381 24.81 5.37 38.13 2.90
3753 4438 0.165727 CGTGCGTGCAAGCTAAATCA 59.834 50.000 24.81 0.76 38.13 2.57
3754 4439 0.521242 CCGTGCGTGCAAGCTAAATC 60.521 55.000 24.81 9.51 38.13 2.17
3755 4440 1.501741 CCGTGCGTGCAAGCTAAAT 59.498 52.632 24.81 0.00 38.13 1.40
3756 4441 2.942879 CCGTGCGTGCAAGCTAAA 59.057 55.556 24.81 2.35 38.13 1.85
3757 4442 3.722295 GCCGTGCGTGCAAGCTAA 61.722 61.111 24.81 3.15 38.13 3.09
3764 4449 2.865669 CTTAAATGGGCCGTGCGTGC 62.866 60.000 0.00 0.00 0.00 5.34
3765 4450 1.136565 CTTAAATGGGCCGTGCGTG 59.863 57.895 0.00 0.00 0.00 5.34
3766 4451 0.393808 ATCTTAAATGGGCCGTGCGT 60.394 50.000 0.00 0.00 0.00 5.24
3767 4452 0.307760 GATCTTAAATGGGCCGTGCG 59.692 55.000 0.00 0.00 0.00 5.34
3768 4453 1.065551 GTGATCTTAAATGGGCCGTGC 59.934 52.381 0.00 0.00 0.00 5.34
3769 4454 2.614057 GAGTGATCTTAAATGGGCCGTG 59.386 50.000 0.00 0.00 0.00 4.94
3770 4455 2.505819 AGAGTGATCTTAAATGGGCCGT 59.494 45.455 0.00 0.00 0.00 5.68
3771 4456 3.134458 GAGAGTGATCTTAAATGGGCCG 58.866 50.000 0.00 0.00 0.00 6.13
3772 4457 4.156455 TGAGAGTGATCTTAAATGGGCC 57.844 45.455 0.00 0.00 0.00 5.80
3773 4458 4.450419 CGATGAGAGTGATCTTAAATGGGC 59.550 45.833 0.00 0.00 0.00 5.36
3774 4459 5.605534 ACGATGAGAGTGATCTTAAATGGG 58.394 41.667 0.00 0.00 0.00 4.00
3775 4460 6.758416 TGAACGATGAGAGTGATCTTAAATGG 59.242 38.462 0.00 0.00 0.00 3.16
3776 4461 7.516470 GCTGAACGATGAGAGTGATCTTAAATG 60.516 40.741 0.00 0.00 0.00 2.32
3777 4462 6.478344 GCTGAACGATGAGAGTGATCTTAAAT 59.522 38.462 0.00 0.00 0.00 1.40
3778 4463 5.807520 GCTGAACGATGAGAGTGATCTTAAA 59.192 40.000 0.00 0.00 0.00 1.52
3779 4464 5.105756 TGCTGAACGATGAGAGTGATCTTAA 60.106 40.000 0.00 0.00 0.00 1.85
3780 4465 4.399303 TGCTGAACGATGAGAGTGATCTTA 59.601 41.667 0.00 0.00 0.00 2.10
3781 4466 3.194329 TGCTGAACGATGAGAGTGATCTT 59.806 43.478 0.00 0.00 0.00 2.40
3782 4467 2.757314 TGCTGAACGATGAGAGTGATCT 59.243 45.455 0.00 0.00 0.00 2.75
3783 4468 3.114809 CTGCTGAACGATGAGAGTGATC 58.885 50.000 0.00 0.00 0.00 2.92
3784 4469 2.757314 TCTGCTGAACGATGAGAGTGAT 59.243 45.455 0.00 0.00 0.00 3.06
3785 4470 2.162681 TCTGCTGAACGATGAGAGTGA 58.837 47.619 0.00 0.00 0.00 3.41
3786 4471 2.643933 TCTGCTGAACGATGAGAGTG 57.356 50.000 0.00 0.00 0.00 3.51
3787 4472 2.738000 GCATCTGCTGAACGATGAGAGT 60.738 50.000 0.00 0.00 39.43 3.24
3788 4473 1.859703 GCATCTGCTGAACGATGAGAG 59.140 52.381 0.00 0.00 39.43 3.20
3789 4474 1.800286 CGCATCTGCTGAACGATGAGA 60.800 52.381 12.17 0.00 39.00 3.27
3790 4475 0.575859 CGCATCTGCTGAACGATGAG 59.424 55.000 12.17 0.00 39.43 2.90
3791 4476 1.423721 GCGCATCTGCTGAACGATGA 61.424 55.000 19.03 0.00 39.43 2.92
3792 4477 1.011463 GCGCATCTGCTGAACGATG 60.011 57.895 19.03 5.74 39.91 3.84
3793 4478 2.176273 GGCGCATCTGCTGAACGAT 61.176 57.895 19.03 0.00 39.32 3.73
3794 4479 2.815211 GGCGCATCTGCTGAACGA 60.815 61.111 19.03 0.00 39.32 3.85
3795 4480 3.869272 GGGCGCATCTGCTGAACG 61.869 66.667 10.83 12.92 39.32 3.95
3796 4481 3.869272 CGGGCGCATCTGCTGAAC 61.869 66.667 10.83 0.00 39.32 3.18
3808 4493 4.856801 CATTGGAGGTCCCGGGCG 62.857 72.222 18.49 0.00 37.93 6.13
3809 4494 3.728373 ACATTGGAGGTCCCGGGC 61.728 66.667 18.49 11.44 37.93 6.13
3810 4495 2.272146 CACATTGGAGGTCCCGGG 59.728 66.667 16.85 16.85 37.93 5.73
3811 4496 1.078426 GTCACATTGGAGGTCCCGG 60.078 63.158 0.00 0.00 37.93 5.73
3812 4497 1.447838 CGTCACATTGGAGGTCCCG 60.448 63.158 0.00 0.00 37.93 5.14
3813 4498 1.745489 GCGTCACATTGGAGGTCCC 60.745 63.158 0.00 0.00 34.29 4.46
3814 4499 2.100631 CGCGTCACATTGGAGGTCC 61.101 63.158 0.00 0.00 0.00 4.46
3815 4500 2.740714 GCGCGTCACATTGGAGGTC 61.741 63.158 8.43 0.00 0.00 3.85
3816 4501 2.742372 GCGCGTCACATTGGAGGT 60.742 61.111 8.43 0.00 0.00 3.85
3817 4502 2.434884 AGCGCGTCACATTGGAGG 60.435 61.111 8.43 0.00 0.00 4.30
3818 4503 1.446792 AGAGCGCGTCACATTGGAG 60.447 57.895 8.43 0.00 0.00 3.86
3819 4504 1.737735 CAGAGCGCGTCACATTGGA 60.738 57.895 8.43 0.00 0.00 3.53
3820 4505 2.780643 CAGAGCGCGTCACATTGG 59.219 61.111 8.43 0.00 0.00 3.16
3821 4506 2.097160 GCAGAGCGCGTCACATTG 59.903 61.111 8.43 0.00 0.00 2.82
3832 4517 0.389166 ACAGCAACTAGACGCAGAGC 60.389 55.000 0.00 0.00 0.00 4.09
3833 4518 2.921634 TACAGCAACTAGACGCAGAG 57.078 50.000 0.00 0.00 0.00 3.35
3834 4519 4.793028 GCATATACAGCAACTAGACGCAGA 60.793 45.833 0.00 0.00 0.00 4.26
3835 4520 3.426859 GCATATACAGCAACTAGACGCAG 59.573 47.826 0.00 0.00 0.00 5.18
3836 4521 3.381045 GCATATACAGCAACTAGACGCA 58.619 45.455 0.00 0.00 0.00 5.24
3837 4522 2.405357 CGCATATACAGCAACTAGACGC 59.595 50.000 0.00 0.00 0.00 5.19
3838 4523 2.980476 CCGCATATACAGCAACTAGACG 59.020 50.000 0.00 0.00 0.00 4.18
3839 4524 3.978687 ACCGCATATACAGCAACTAGAC 58.021 45.455 0.00 0.00 0.00 2.59
3840 4525 3.634910 TGACCGCATATACAGCAACTAGA 59.365 43.478 0.00 0.00 0.00 2.43
3841 4526 3.736252 GTGACCGCATATACAGCAACTAG 59.264 47.826 0.00 0.00 0.00 2.57
3842 4527 3.713288 GTGACCGCATATACAGCAACTA 58.287 45.455 0.00 0.00 0.00 2.24
3843 4528 2.550978 GTGACCGCATATACAGCAACT 58.449 47.619 0.00 0.00 0.00 3.16
3844 4529 1.257936 CGTGACCGCATATACAGCAAC 59.742 52.381 0.00 0.00 0.00 4.17
3845 4530 1.566404 CGTGACCGCATATACAGCAA 58.434 50.000 0.00 0.00 0.00 3.91
3846 4531 0.249280 CCGTGACCGCATATACAGCA 60.249 55.000 0.00 0.00 0.00 4.41
3847 4532 0.944311 CCCGTGACCGCATATACAGC 60.944 60.000 0.00 0.00 0.00 4.40
3848 4533 0.319555 CCCCGTGACCGCATATACAG 60.320 60.000 0.00 0.00 0.00 2.74
3849 4534 0.756070 TCCCCGTGACCGCATATACA 60.756 55.000 0.00 0.00 0.00 2.29
3850 4535 0.606604 ATCCCCGTGACCGCATATAC 59.393 55.000 0.00 0.00 0.00 1.47
3851 4536 1.274167 GAATCCCCGTGACCGCATATA 59.726 52.381 0.00 0.00 0.00 0.86
3852 4537 0.034896 GAATCCCCGTGACCGCATAT 59.965 55.000 0.00 0.00 0.00 1.78
3853 4538 1.444250 GAATCCCCGTGACCGCATA 59.556 57.895 0.00 0.00 0.00 3.14
3854 4539 2.189521 GAATCCCCGTGACCGCAT 59.810 61.111 0.00 0.00 0.00 4.73
3855 4540 4.444838 CGAATCCCCGTGACCGCA 62.445 66.667 0.00 0.00 0.00 5.69
3856 4541 3.652539 TTCGAATCCCCGTGACCGC 62.653 63.158 0.00 0.00 0.00 5.68
3857 4542 1.808390 GTTCGAATCCCCGTGACCG 60.808 63.158 0.00 0.00 0.00 4.79
3858 4543 1.017701 GTGTTCGAATCCCCGTGACC 61.018 60.000 0.00 0.00 0.00 4.02
3859 4544 0.320073 TGTGTTCGAATCCCCGTGAC 60.320 55.000 0.00 0.00 0.00 3.67
3860 4545 0.611200 ATGTGTTCGAATCCCCGTGA 59.389 50.000 0.00 0.00 0.00 4.35
3861 4546 0.726827 CATGTGTTCGAATCCCCGTG 59.273 55.000 0.00 0.00 0.00 4.94
3862 4547 0.611200 TCATGTGTTCGAATCCCCGT 59.389 50.000 0.00 0.00 0.00 5.28
3863 4548 1.867233 GATCATGTGTTCGAATCCCCG 59.133 52.381 0.00 0.00 0.00 5.73
3864 4549 1.867233 CGATCATGTGTTCGAATCCCC 59.133 52.381 0.00 0.00 38.99 4.81
3865 4550 2.540101 GTCGATCATGTGTTCGAATCCC 59.460 50.000 15.33 3.01 44.57 3.85
3866 4551 3.243877 CAGTCGATCATGTGTTCGAATCC 59.756 47.826 15.33 6.24 44.57 3.01
3867 4552 3.302092 GCAGTCGATCATGTGTTCGAATC 60.302 47.826 15.33 6.80 44.57 2.52
3868 4553 2.604914 GCAGTCGATCATGTGTTCGAAT 59.395 45.455 15.33 12.52 44.57 3.34
3869 4554 1.992667 GCAGTCGATCATGTGTTCGAA 59.007 47.619 15.33 0.00 44.57 3.71
3870 4555 1.629013 GCAGTCGATCATGTGTTCGA 58.371 50.000 11.02 11.02 42.01 3.71
3871 4556 0.647410 GGCAGTCGATCATGTGTTCG 59.353 55.000 7.05 7.05 38.28 3.95
3872 4557 1.725641 TGGCAGTCGATCATGTGTTC 58.274 50.000 0.00 0.00 0.00 3.18
3873 4558 2.408271 ATGGCAGTCGATCATGTGTT 57.592 45.000 0.00 0.00 0.00 3.32
3874 4559 2.168313 TGTATGGCAGTCGATCATGTGT 59.832 45.455 0.00 0.00 0.00 3.72
3875 4560 2.541346 GTGTATGGCAGTCGATCATGTG 59.459 50.000 0.00 0.00 0.00 3.21
3876 4561 2.799562 CGTGTATGGCAGTCGATCATGT 60.800 50.000 0.00 0.00 0.00 3.21
3877 4562 1.788886 CGTGTATGGCAGTCGATCATG 59.211 52.381 0.00 0.00 0.00 3.07
3878 4563 1.681264 TCGTGTATGGCAGTCGATCAT 59.319 47.619 0.00 0.00 0.00 2.45
3879 4564 1.099689 TCGTGTATGGCAGTCGATCA 58.900 50.000 0.00 0.00 0.00 2.92
3880 4565 1.478137 GTCGTGTATGGCAGTCGATC 58.522 55.000 0.00 0.00 30.27 3.69
3881 4566 0.248498 CGTCGTGTATGGCAGTCGAT 60.248 55.000 0.00 0.00 30.27 3.59
3882 4567 1.135939 CGTCGTGTATGGCAGTCGA 59.864 57.895 0.00 0.00 0.00 4.20
3883 4568 1.154093 ACGTCGTGTATGGCAGTCG 60.154 57.895 0.00 0.00 0.00 4.18
3884 4569 0.388134 ACACGTCGTGTATGGCAGTC 60.388 55.000 28.69 0.00 45.56 3.51
3885 4570 0.032952 AACACGTCGTGTATGGCAGT 59.967 50.000 29.79 10.95 46.79 4.40
3886 4571 0.713883 GAACACGTCGTGTATGGCAG 59.286 55.000 29.79 2.39 46.79 4.85
3887 4572 0.668096 GGAACACGTCGTGTATGGCA 60.668 55.000 29.79 0.00 46.79 4.92
3888 4573 0.389426 AGGAACACGTCGTGTATGGC 60.389 55.000 29.79 18.59 46.79 4.40
3889 4574 2.163010 AGTAGGAACACGTCGTGTATGG 59.837 50.000 29.79 4.72 46.79 2.74
3890 4575 3.482722 AGTAGGAACACGTCGTGTATG 57.517 47.619 29.79 5.19 46.79 2.39
3891 4576 3.064545 GCTAGTAGGAACACGTCGTGTAT 59.935 47.826 29.79 20.41 46.79 2.29
3892 4577 2.416547 GCTAGTAGGAACACGTCGTGTA 59.583 50.000 29.79 12.82 46.79 2.90
3894 4579 1.467734 AGCTAGTAGGAACACGTCGTG 59.532 52.381 23.40 23.40 39.75 4.35
3895 4580 1.467734 CAGCTAGTAGGAACACGTCGT 59.532 52.381 0.00 0.00 0.00 4.34
3896 4581 1.736126 TCAGCTAGTAGGAACACGTCG 59.264 52.381 0.00 0.00 0.00 5.12
3897 4582 2.478200 GCTCAGCTAGTAGGAACACGTC 60.478 54.545 0.00 0.00 0.00 4.34
3898 4583 1.473278 GCTCAGCTAGTAGGAACACGT 59.527 52.381 0.00 0.00 0.00 4.49
3899 4584 1.746220 AGCTCAGCTAGTAGGAACACG 59.254 52.381 0.00 0.00 36.99 4.49
3910 4595 4.402829 AGCTATAACTGCTAGCTCAGCTA 58.597 43.478 17.23 6.15 46.98 3.32
3911 4596 3.230134 AGCTATAACTGCTAGCTCAGCT 58.770 45.455 17.23 15.77 46.98 4.24
3912 4597 3.658757 AGCTATAACTGCTAGCTCAGC 57.341 47.619 17.23 13.94 46.98 4.26
3913 4598 6.918626 TGATTAGCTATAACTGCTAGCTCAG 58.081 40.000 17.23 8.46 46.98 3.35
3914 4599 6.901081 TGATTAGCTATAACTGCTAGCTCA 57.099 37.500 17.23 3.29 46.98 4.26
3915 4600 8.770438 ATTTGATTAGCTATAACTGCTAGCTC 57.230 34.615 17.23 0.42 46.98 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.