>input_sequence_40652
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------------------------------------------------ATGGGGTGGGCCGCGCGGTTCCTGACTGCGGT
CTCATTCCTCGCCGCGGGCGTCCTCTTCGCGCCGGACGCGCTCTTCGGCGGGGCCCCCGGCCGCCCAGCCGCGGGCGTCG
CGGCGGCGAGGCTGGCCCATGTACTCTGCTTCGCCACCGCATGGGGAGCCGCGCTCTGGGTCACCTTCATCGGCGGCATC
GTCATGTTCAAGTAAAAAAGTTTGCCCCGTCTCAGTTAAATTTCTTAGCCTCGCGTGTGTGGGAATTCGTCCAGGCTTTC
GTTGCCTTTATTATTATTGCGCTTACTCGGTACTTACATCTTACATGTTCCACCATTTGTAAATAGCTTCAGAATTTAGG
CAGTTTTGG-TGCCTCCCGTTGCATTTGGTAGGTTTCCACTATGCTCAAATGCAATTTCTTTGGGACAGGCAACACAGAT
TTTGAGATAGGACCCCATACCTTCTCAGCAATTCGTCTCACCTTCTACAACTTAGTATGTTTTTACAATATCGCCCGTTT
ATGCATGCTTGCTAGCACAAAAACATATTAGCAGAACATCCAAAGATATTTTAATCCAAGGGAAGGAACACACACAGCTT
GTAAACTGAAGACATTTGATTGTTCAGTATCTAGAGAGATGTAGATCTCCTATGAAGCATTAGCCACAAGCCTGTAACGA
CTGTGGTTACCCTTTACTACTAGAATATCTGAATTTTGAAAGCACCAATGCTATTCAGCTTTTACAAGAAAGTTGGGTTG
TTTACTTGATCCGTAAGATGCATTGTCAGAGCAATACATCGGATGCACTTAGAATGCTATATCGTTTGCTGGATTGTTGA
ACTCTGTGCCTTCATTGTTGTGAAACCTGCAATCATAAGCAATTGATATTGTTTTGATCTAATCTCCTGGATAATGAAGG
CATTTGCCAAGACACCAGTTCGGGAGTCTGCAAGGGAAGATGTTCCCAGCATACTTCATGTTGATATCGGTGTGTTCAGC
TATATCGGTTGCAGCATTTGCATACCTCAACCCATGGAAGACAGCATCAACTATTGAGCGTTACCAGCTTGGTTTCCTTC
TTGCTGCCCTCGGTTTTGACCTGTCCAATCTTCTGGTCTTCACCCCCATGACTATCGAGGTCAGTCCTTTACGTACTCAT
TAGTCTTGTTTACAAGGTCACATTACCCTTTTTGCCTTCTCATACTTCTACTTACAAGGAAAATTTGTATTGTATTTGTG
CTAGATGACAATTGCGATGATTAGTGAAGTTTCATTTTATAGAGTCATCTGTTGTTTAATGTCATAAAATATTGGTACAT
CTGTCATGACACACGGTCTTGGATTAACAGTTCCGTGCAGAAATCACAGGCACATCCGGATTTCTGTTAGTGTTTGTAAT
AATATTATCGGTAGTGAACAAAAGTAACATGGTAGTTACCCCGCAAAAAAAAACATGGTAGTTGGCCTTCGCAGCCTCGT
AGGTGATGCTGTTCCCATACAGAGAATCATAATACATGGTGACACGGACTTGGTTGTGTAGTATATGTTTTTTTTTTGCG
GGTGTGT-------------------------------------------------------------------------
--------------AGTATATGTTATACGGCCTGCGAATCATACTGGTTGCTGCAAACAGCTATAGTGTGTGGTTTAAAG
TAGTAACCGTTCAGGGGGACTGGATCCTTGCGATGAGCTCAGAAGAACCTATGCTGTATGCAGCTGTTGATTCACAGTAG
CAACTTTGCTCATCTTGCGCAGATGATGATGAAGAGGCACAAGATCGAGAAGGATCTTGGCATCGGTGGTGAGGTGGGAC
GGTCAAGGAATGCCGAGTTAGCAAAGACAAACCCTGCACTCGCAGCGATGAACAAGAAGTTTGGGATGATCCACGGGCTG
TCGTCCCTGGCAAACATCATGGCATTCGGCAGCCTGGCCATGCACTCATGGTACCTAGCGAGCAAGCTCGAGTTGTGA--
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>chr4D_1_TraesCS4D01G144000
TGCTGCAACCGTTGTTCAATTTTGCTGGAACCGGGCAATTTTTTGCTATAATCGACCATGGAGCTTTTCCCTGCTAAATT
TGCTTTTGCTGGAACCGGTGCATATTTTTGCTGGAAGCTGGTATTTTTTTTTGGTATAACCATTGGAGCTTTTTTTGCTG
AAACCGGGGCAGCAAAAAGCTACATCCAACACTGCCGGCGATGGAGATGACGGCCTGCGGTGCTGCATACAGGGCTCACC
GGCCACCACGGTAATCATCGGTTTTTGCTACAACCATTATCAAAATTTGCTACAACCGTTGTCGAT-TTTGCTATAACCG
GTGTATTTGCATTTTTGCTACATTGCACAAGCCAACGTCTTGATTTTTT-GCTACAACCCTTGCTCGA-TTTTGTTGGAA
CGGGCGCTCAGTTTTGCTGGAACAGGTGACCGAGATGTTACGACGGTGAGATCTGACCGACGAGCTGCGGCATCAAGCGT
GAGCGGCGACGAGCATGATGGCGAGCTATGGCCCTCGCCATCGGAGCCGCAATCGTCGCCACCAGAGCTACAACCACGGG
TGCCGATGTTACATGCGTGGAGCTGGCCACCGGCGGCGAC--------------------GGCGGCGACCATTGGCG---
--------------------GGGGCGGCGACCGGCGGTGACCATCGGCGGGGGGCC--------GCGACCGGTGATGA-T
TTGA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCGCTCGCTCATCCATGGCGGCGGTGCCCGCTGCTCCTTTTTT-
CC-GCTGTGCTCACGAGATTC----ATTTTTTTTTAAGAAAGGAACTGCACGAGAGCTAAATCTAACGGCAACACATGCT
TGCATCGAACGGTTGGGGCTCGACCGGCCCAAACGGTTCGGCCGGCGCGCC-GCGCCTATAAGCGCCCTTTGCCAAATCG
GCTGTAGA--TGCTCCAACCTTCCTTCCCATTTCCTACAAACACTTCTCTGCCTCCTCTTCCTTCACCCCCTTCCGGCGC
CTCCAAACCCTAGCCCGTCGAGCCAGCCGGAAGAAGCGGCGAGACATTATGGGGTGGGCCGCGCGGTTCCTGACTGCGGT
CTCATTCCTCGCCGCGGGCGTCCTCTTCGCGCCGGACGCGCTCTTCGGCGGGGCCCCCGGCCGCCCAGCCGCGGGCGTCG
CGGCGGCGAGGCTGGCCCATGTACTCTGCTTCGCCACCGCATGGGGAGCCGCGCTCTGGGTCACCTTCATCGGCGGCATC
GTCATGTTCAAGTAAAAAAGTTTGCCCCGTCTCAGTTAAATTTCTTAGCCTCGCGTGTGTGGGAATTCGTCCAGGCTTTC
GTTGCCTTTATTATTATTGCGCTTACTCGGTACTTACATCTTACATGTTCCACCATTTGTAAATAGCTTCAGAATTTAGG
CAGTTTTGG-TGCCTCCCGTTGCATTTGGTAGGTTTCCACTATGCTCAAATGCAATTTCTTTGGGACAGGCAACACAGAT
TTTGAGATAGGACCCCATACCTTCTCAGCAATTCGTCTCACCTTCTACAACTTAGTATGTTTTTACAATATCGCCCGTTT
ATGCATGCTTGCTAGCACAAAAACATATTAGCAGAACATCCAAAGATATTTTAATCCAAGGGAAGGAACACACACAGCTT
GTAAACTGAAGACATTTGATTGTTCAGTATCTAGAGAGATGTAGATCTCCTATGAAGCATTAGCCACAAGCCTGTAACGA
CTGTGGTTACCCTTTACTACTAGAATATCTGAATTTTGAAAGCACCAATGCTATTCAGCTTTTACAAGAAAGTTGGGTTG
TTTACTTGATCCGTAAGATGCATTGTCAGAGCAATACATCGGATGCACTTAGAATGCTATATCGTTTGCTGGATTGTTGA
ACTCTGTGCCTTCATTGTTGTGAAACCTGCAATCATAAGCAATTGATATTGTTTTGATCTAATCTCCTGGATAATGAAGG
CATTTGCCAAGACACCAGTTCGGGAGTCTGCAAGGGAAGATGTTCCCAGCATACTTCATGTTGATATCGGTGTGTTCAGC
TATATCGGTTGCAGCATTTGCATACCTCAACCCATGGAAGACAGCATCAACTATTGAGCGTTACCAGCTTGGTTTCCTTC
TTGCTGCCCTCGGTTTTGACCTGTCCAATCTTCTGGTCTTCACCCCCATGACTATCGAGGTCAGTCCTTTACGTACTCAT
TAGTCTTGTTTACAAGGTCACATTACCCTTTTTGCCTTCTCATACTTCTACTTACAAGGAAAATTTGTATTGTATTTGTG
CTAGATGACAATTGCGATGATTAGTGAAGTTTCATTTTATAGAGTCATCTGTTGTTTAATGTCATAAAATATTGGTACAT
CTGTCATGACACACGGTCTTGGATTAACAGTTCCGTGCAGAAATCACAGGCACATCCGGATTTCTGTTAGTGTTTGTAAT
AATATTATCGGTAGTGAACAAAAGTAACATGGTAGTTACCCCGCAAAAAAAAACATGGTAGTTGGCCTTCGCAGCCTCGT
AGGTGATGCTGTTCCCATACAGAGAATCATAATACATGGTGACACGGACTTGGTTGTGTAGTATATGTTTTTTTTTTGCG
GGTGTGT-------------------------------------------------------------------------
--------------AGTATATGTTATACGGCCTGCGAATCATACTGGTTGCTGCAAACAGCTATAGTGTGTGGTTTAAAG
TAGTAACCGTTCAGGGGGACTGGATCCTTGCGATGAGCTCAGAAGAACCTATGCTGTATGCAGCTGTTGATTCACAGTAG
CAACTTTGCTCATCTTGCGCAGATGATGATGAAGAGGCACAAGATCGAGAAGGATCTTGGCATCGGTGGTGAGGTGGGAC
GGTCAAGGAATGCCGAGTTAGCAAAGACAAACCCTGCACTCGCAGCGATGAACAAGAAGTTTGGGATGATCCACGGGCTG
TCGTCCCTGGCAAACATCATGGCATTCGGCAGCCTGGCCATGCACTCATGGTACCTAGCGAGCAAGCTCGAGTTGTGACT
GTTGAAAGTTAA-GTGATGAGTCCATGTAATGACCTCTCTTCTCAGCTGGTGACAGGAGCTTATAGTCTAGGCTGTCTAC
AGCTAAAGAAAGAGTAGTGTGAAAACTTTGCATCTGATGTTGTGACTTGGGATAATAATGTACAGAGTGCAAGGAGTGTC
TAGCTGTTTAATAATGTGCAGGAGCGCAGAAACTCCGCTAGAATCAGTTTATCTTTTACAGATGATGATCTGCGTATGAA
ACGGGTGTAAACTGAAATTGGCCACGAATGGTTGTAGATGGTGCAAGTATGATGCTCTGGTGCTATAGCAAATAACATTC
CTTTGGAATTCGCAAAAAAAGG----------------------------------------------------------
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-------------AAAAAAAAAACGATGGACACATCTCAGTAGCACACAACCAGGGGATGATGTAAACCGTGAACGACTG
GCAATGGGCTCCG-TT--TAGATGGCACCTCTGCTTTTTCTC-TTTTCTAATCCTTAATGCAAGCTTTAAA-AAATAAAT
CATATCCCTCTATTTATATCCCTCCTAGCGAGCTCAAGA-------------------------------GAGGCTCAAC
GAAAAAACTATTACAAGATGGGCCCTCGGCCAAATTTCCTAATTCATGAGCAACGGAATAGCCTCTCTAGGACTTTGCGC
AGATGAGGTATAAGAAAAGCTGCACGCGATGTGACAGCAATCATCAAAGATTGCAGCCGCTGGACCTACAGATTGTCGCT
TCAGCAGATAGCACATCGTAATAGAAGTCAATTTCCCAATTCCTTGCATTTTCTAATCCTGCATCTAAGCTTGTGCGACG
TACAGGCCAAATATGGAAGTAGGCCGAAGAGCCTGCCTGATTTAGCTTGCACGCACGGCCCATTTAAGATCACTCTCATC
GTTCAGCAGATGCGCCCGGGACCTCCAATGTGACGCGCTCTGCGTCTAGTTGCTGTATATGCGGTCACGGGGATTCGAAC
ACATGATCGACTGCCATACACGACGTGTTCCTACTAGCTGAGCTAGCAGTTATAGCTAATCAAATA
>chr7B_38
-------------------------------------ATTTTTTGCTACAATCGACTCTGGAGCTTTTCCTTGCTAAATT
TGCTTTTGCTGGAACCGGCGCATATTTTTGCTGGAAGCTAGTA--TTTTTTTGCTACAACCATTGAAGCTTTTTTTGCTG
GAACCGGGGCAGCAAAAAGCTACATCCAGCACTGCCGGCGATGGAGACGACGTCCTGCGGTGCTACATCCAGGGCTCGCC
GGCCACCACGGTAATCATCGGTTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGGTGTCAAAATTTGCTACAACCG
GTGTATTTGCATTTTTGCTACATTGCACAAGCCAGCGTATGGATTTTTT-GCTACAACCCTCGCTCGA-TTTTGCTGGAA
CGGCGCTCGTTTTTTGCTGGAACAGGTGATCGAGATGTTACGACGGTGAGATCGGACCGACGAGCTGCGGCATCAAGCGT
GAGCGGCGACGAGCACGATGGCGAGCTATGGCCCTCGCCATTGAAGCTGCAATCGTCGCCACCGGAGCTACAACCACGGG
TGCCGATGTTACATGCGTGGAGCTGGCCACCGGCGGCGAC--------------------GGCGACGGCGATCATCGGCG
ACGGTGACGACCAACGGCGAGGGGCGGCGACCGGCGATGACCATCGGCGGGGGGCC--------GCGACCGGTGGTGATT
TTGA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCGCTCGCTCATCCATGGCAGCGGTGCCCGCTGCTCCTTTTTT-
CC-GCTGTGCTCGCGAGATTC----A-TTTTTTTTAAGAAAGGAACTGCACGAGAGCCCAATCTGACGGCAACACGTGCT
TGCATCGAACGGTTGGGGCTCGACCGGCCGAAACGGTTAGGCCGGTGCGCCGGCGCCTATAAGCGCCCTTTG--------
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>chr2A_38
-------------------------------------ATTTTTTGCTACAATCGACTCTGGAGCTTTTCCTTGCTAAATT
TGCTTTTGCTGGAACCGGCGCATATTTTTGCTGGAAGCTAGTA--TTTTTTTGCTACAACCATTGAAGCTTTTTTTGCTG
GAACCGGGGCAGCAAAAAGCTACATCCAGCACTGCCGGCGATGGAGACGACGTCCTGCGGTGCTGCATCCAGGGCTCGCC
GGCCACCACGGTAATCATCGGTTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGGTGTCAAAATTTGCTACAACCG
GTGTATTTGCATTTTTGCTACATTGCACAAGCCAGCGTATGGATTTTTT-GCTACAACCCTCGCTCGA-TTTTGCTGGAA
CGGCGCACGTTTTTTGCTGGAACAGGTGATCGAGATGTTACGACGGTGAGATCTGACCGACGAGCTGCGGCATCAAGCGT
GAGCGGCGACGAGCACGATGGCGAGCTATGGCCCTCGCCATTGAAGCTGCAATCGTCGCCGCCGGAGCTACAACCACGGG
TGCCGATGTTACATGCATGGAGCTGGCCACCGGCGGCGAC--------------------GGCGACGGCGATCCTCGGCG
ACGGTGACGACCAACGGCGAGGGGCGGCGACCGGCGATGACCATCGGCGGGGGGCC--------GCGACCGGTGGTGATT
TTGA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCGCTCGCTCATCCATGGCAGCGGTGCCCGCTGCTCCTTTTTT-
CC-GCTGTGCTCGCGAGATTC----A-TTTTTTTTAAGAAAGGAACTGCACGAGAGCCCAATCTGACGGCAACACGTGCT
TGCATCGAACGGTTGGGGCTCGACCGGCCGAAACGGTTAGGCCGGTGCGCCGGCGCCTATAAGCGCCCCTTTG-------
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>chr6B_201
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----------------------------------------ATGGAGACGACGGCCTGCGGTGCTGCATCCAGGGCTCGCC
AGCCACCACGGTAATCATCGGTTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGTTGTCGAT-TTTGCTACAACCG
TTG-------------------------------------------------------------TCGA-TTTTGCTGGAA
CGGGCGCTCGCTTTTGCTGGAACAGGTGACCGAGATGTTACGACGGTGAGATCTGACCAACGAGCTGTGGCATCAGGCGT
CAGTGGCGACGAGGATGATGGCGGGATATGGCCCCCGCCATCGGAGCTGCAATTGTTGCCACCGGAGCTACAACCACGGG
TGTCGATGTTACATGTGTGGAGCTGGCCACCGGCGGCGACCAT-------------------------------------
--------------CGGTGAGGGGCGGCGATCGGCGGTGACCATCGGCGGGGTGGGGGGGGGGTGCGACCGGTGGTGA-T
TTGA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCCCTCGCTCATCCATGGCAGCGGTGCCCGCTGCTCCTTTTTTT
CC-GCTGTGCTTGCGAGATTC----T-TTTTTTTTAAGAAAGGAACCGCACAAGAGCCCAATCTGACGGCAACACGTGCT
TGCATCGAACGGTTGGGGCTCGACCAGCCCAAACGGTTCAGCCGGTGCGCCGGCTCCTATAAGC----------------
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>chr2B_225
GCAT----------------------------------------------------------------------------
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---------------------------------------------------------------------CAGGGCTCGCT
GTCCACCACGGTCATCATCGGTTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGTTATCAAT-TTTGCTACAATCG
GTGTATTTGCATTTTTGCCACATTGCACAAGCCAACATCTGGATTTTTTTGCTACAACCATTGCTCGATTTTTGCTAGAA
TGGGCACTCGTTTTTGCTGGAACGGGTGACCAAGATGTTATGATGGTGAGATGTGACCGACGAGCTGCGGCATCTGGCGT
GAGCGGCGACGAGCACGACGTCGAGCTATGGCCCTCGCCATCGGAGTTGCAATCGTCGCCACCAGAGCTACAACCACGGG
TGCCGATGTTATATGCGTGGAGCTGGCCACCGGCGGCGAC--------------------GG------------------
------------------------TGGCGACTGGCGGTGACCATCGGCGGGGG-CC--------ACGACCAGTGGTGA-T
TTTA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCACGCGCTCATCCATGGCAGCGGCACCCGCCGCTCCTTTTTTT
CT-GCTGTGCTCACGAGATT-----A-TTTTTTTTAATAAAGGAACTGCACGAGAGCCCAGTCT---------------T
TGAATCGAACGGTTAGGGCTCGACCGGCCCAAGCAGTTCGGCCGGTGCGCCGGCGCTTATAAGCGCCCT-----------
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>chr5D_225
GCAT----------------------------------------------------------------------------
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---------------------------------------------------------------------CAGGGCTCGCC
GGCCACCACGGTCATCATCGGTTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGTTGTCGAT-TTTGCTACAGCCG
GTGTATTTACATTTTTGCCACATTGCACAAGCCAGCGTCTGGATTTTTT-GCTACAACCGTTGTTCGA-TTTTGCTGGAA
CGGGCGCTCGTTTTTGCTGGAACGGGTGACCGAGATGTTACAACGGTGAGATGTGATCGACGAGCTGCGGCATCAGGCAT
GAGCGGCGACGAGCACGGCGGTGAGCTATGGCCCTTGCCATCGGAGCTACAATCGTCGCCACCAGAGCTACAACCACGGG
TGCCGATGTTACATGCGTGGAGCTGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGTCGCGCTCGCTCATCCATGGCAGCGGCGCCCACTGCTCCTTTTTT-
CC-GCTGTGCTCGCGAGATTCGTTTT-TCTTTTTTAAGAAAGGGACTGCACGAGAGCCCAGTCT---------------T
CGAATTGAACGGTTGGGGCTCGACCGGCCCAAACAATTCGGCCGGTGCGCCGGCGCCTATAAGCGCCC------------
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>chr3B_299
TTGC----------------------------------------------------------------------------
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-------------------------------------------------------------TCGAT-TTTGCTACAACCA
GTGTATTTGCATTTTTGCCACATTGCACAAGCCAGCGTCTGGATTTTTT-GCTACAACCGTTGCTCGA-GTTTGCTGGAA
CGGGCGCTCGTTTTTGCTGGAATGGGTGACCGCGATGTTACGGTGGTGAGATGTGACCGACGAGCTGCGGCATCAGGCGT
GAGCGGCGACGAGCACGATGGCGAGCTATGGCCCTCGCCATAGGAGCTGCAATCGTCGCCACCAGAGCTACAACCACGG-
TGCCGATGTTAGATGTGTGGAGCTGGCCACCGGCAGCGATGGCGGCGACCATCGACGGGGGG------------------
------------------------CGGCGACCAGCGGTGACCATCGGCAGGGG-CC--------GCGATCGGTGGTGA-T
TTGA----------------------------------------------------------------------------
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----------------------------AGTTGGTCGCGCTCGCTCATCCATGGCAGCGGCGCCTGCTGCTTCTTTTTTT
CCTGATGTGCTCGCGAGATTCG------TTTTTTTAAGAAAGAAACTGTACGAGAGCCCAGTCT---------------T
CGAATCGAACGGTTGGGGCTCGACCGGCCCAAACAATTTGGCCGGTGCGCCGGCGCCTATAAGAGCCC------------
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>chr4B_863
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--------------------------------------------------------------------TTTGCCAAATCG
GCTGTAGATGTGCTCCAACCTTCCTTCCCATTTCCTACAAACACG-CTCTGCCTCCTCTTCCTTCACCCCCCTACGGCGC
CTCCAAACCCTAGCCCGTCGAGCCAGCCGGAAGAAGCGGCGAGACATTATGGGGTGGGCCGCGCGGTTCCTGACTGCGGT
CTCATTCCTCGCCGCGGGCGTCCTCTTCGCGCCGGACGCGCTCTTCGGCGGCGCCCCCGGCCGCCCAGCAGCGGGCGTCG
CGGCGGCGAGGCTGGCCCATGTACTCTGCTTCGCCACCGCATGGGGAGCCGCGCTCTGGGTCACCTTCATCGGCGGCATC
GTCATGTTCAAGTAAAAAAGTTTGCCCCGTCTCAGTTAAATTTCTTAGCCTCGCGTGTGTGGGAATTCATCTAGGCTTTT
GTTGCCTTTATTATTATTGCGCTTACTCGGTACTTACATCTTACATGTTCCCCCATTTGTAAATAGCTTCAGAATTTAGG
CAGTTTTGGGTGCCTCCCGTTGCATTTGATAGCTTTCCACTATGCTCAAATGCAATTTCTTTGGGACAGGCAACACAGAT
TTTGAGATAGGACCCCATACCTTCTCAGCAATTCATCTCACCTTGTACAACT---TATGTTTTTACAATATCACCCGTTT
ATGCATGCTTGCTAGCACAAAAACATATTAGCAGAACATCCAAAGATATTTTAATCCAAGGGAAGGAACATACACAGCTT
GTAAACTGAAGACATTTGATTGTTCAGTATCTAGAGAGATGTAGATCTCCTATGAAACATTAGCCACAAGCCTGTAACGA
CTGTGGTTACCCTTTACTACTAGAACATCTGAATTTTGAAAGTGTCAATGCTATTCAGCTTTTACAAGAAAGTTGGGTTG
TTTACTTGATCCGTAAGATGCATTGTCAGAGCAATACATTAGATGCACTTAGAATGCTATATCGTTTGCTGGACTCTTGA
ACTCTGCGCCTTCATTGTTGTGAGACCTGCAATCATAAGCAATTGATATTGTTTTGATCTAATCTCCTGGATAATGGAGG
CATTTGCCAAGGCACCAGTTCGGGAGTCTGCAGGGGAAGATGTTCCCAGCATACTTCATGTTGATATCGGTGTGTTCAGC
TATATCGGTTGCAGCATTTGCATACCTCAACCCGTGGAAGACAGCATCAACTATTGAGCGTTACCAGCTTGGTTTCCTTC
TTGCTGCCCTCGGTTTTGACCTGTCCAACCTTCTGGTCTTCACCCCCATGACTATCGAGGTCAGTCCTTTACGTACTCAT
TAGTCTTGTTTACATGGTCACATTACCGTTTTTGCCTTCTCATACTTCTACTTACAAGGAAAATTTGTATTGTATTTGTG
CTAGATGACAATTGCGACGATTAGTGAAGTTTCATTTTATAGAGTCATATGTTGTTTAATGTCATAAAATATTGGTACAT
CTGTCATGACACACGGTCTTGGGTTAACAGTTCCGTGCAGAAATCACAGGCACATCCGGATTTCTGTTAG-GTTTGTAAT
AATATTATCGGTAGTGAACAAAAGTAACATGGTAGTTT--------------------------GCCTTCACAGCCTCGT
AGGTGATGCTGTTCCCATACAGAGAATCATAATACATGGTGACACGGACTTGGTTGTGTAGTACTCCCTCCGTCCGGAAA
TACTTGTCGGAGGAATGAATGTATCTAGACGTATTTTAGTTTTAAATACATCCATTTTTATGCATTTCTCCGACAAGTAT
TTCCGGACGGAGGGAGTATATGTTATACGGCCTGCGAATCATACTGATTGTTGCAAACAGCTATAGTGTGTGGTTTAAAG
TAGTAACCGTTCAGGGGGACTGGATCCTTCCCATGAGCTCAGAAGAACCTATGCTTTATGCAGCTGTTGATTCACAGTAG
CGACTTTGCTCATCTTGCGCAGATGATGATGAAGAGGCATAAGATCGAGAAGGATCTTGGCATCGGTGGTGAGGTGGGAC
GGTCAAGGAATGCCGAGTTGGCAAAGACAAACCCTACACTGGCAGCGATGAACAAGAAGTTCGGGATGATCCACGGGCTG
TCGTCCCTGGCAAACATCATGGCATTCGGCAGCCTGGCCATGCACTCGTGGTACCTAGCGAGCAAGCTCGAGTTGTGACT
GTTGAAAGTT-A-GTGATGAGTCCATGTAATGACCTCTCTTCTCAGCTGGTGACAGGAGCTTATAGTCTAGGCTGTCTAG
AGCTAAAGAAAGAGTAGTGTGAAAACTTTGCATCTGATGTTGTGACTTGGGATAATAATGTACAGAGTGCAAGGAGTGT-
-AGCTGTTTAATAATGTGCAGGAGCGCAGAAACTCCGCTAGAATCAGTTTATCTTTTACAGATGATGATCTGCGTATGAA
ACGGGTGTAAACTGGAATTGGCCACGAATGGTTGTAGATGG-------------------TGTTATAGCAGATAACATTC
CGAAGGAATTCACACAAAAAACGAAAAAAATGATATTTTTTTTTAACATCTCTACAGACACAAGCGCTCATATACACGCG
CATACACTCATCCCTATGAACGCACACACATACCCTACCCCTATGAGTACCTCCGAAAGACTAAGTTGTCATATCATCTT
AAAATTTACGAAGTCACGTAGGCACCTCGTCGTCGACGGGAAGACGGGAACGTCTCCTCCCACAATGCGTATCGCCAGAA
ATCCTGAAATAAATTCAGGAATAAATGTGAGCACCAGGATTTGGCTGGGGATACAACAGTCCCTCTAACCATCCAATCAC
AGGTTGGTTCGCAAAAATAAAAACGATGGACACATCTCCCTAGCACACAACAAGGGGATGATGTAAACC---------TG
GCAATGGGCTCCGTTTCGTAGATGGCACCTCTGTTTTTTCTTTTTTTCTAATCCTGCATGCAAGCTTTTTTCAAAAAAAA
AAAATCACTCTCTTTATTTATGTTTCAACCAGCGTTACATCACTTAATAAGAGATGGAAGAGCTCGCTAGGAGGCTCAAG
GAAAAAACTACTACAAGACGGGCCCTTGGCCAAATTTGCTAATTCATGAGCAACGAAATTAGTCTGTCTAGGAC-TGCAC
AAACGAGGTATGAGGAAAGCTGCACATGATATGGTAGCAATCATCAAAGATTGCAGCCGCTGGACCTACAGATTGTC---
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>chr4A_942
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---------------------------------------------------------------------CCTTCCGGCGC
CTCCAAACCCTAGCCCGTTGAGCCAGCCGGAAGAAGCGGCGAGACATTATGGGATGGGCCGCGCGGTTCCTGACTGCGGT
CTCATTCCTCGCCTTGGGCGTCCTCTTCGCGCCGGACGCGCTCTTCGGCGGCGCCCCCGGCCGCCCAGCCGCCGGCGTCG
CGGCGGCGAGGCTGGCCCATGTACTCTGCTTCGCCACCGCATGGGGGGCCGCGCTCTGGGTCACCTTCATCGGCGGCATC
GTCATGTTCAAGTAAAAAAGTTTGCGCCGTCTCAGTTAAATTTCTTAGCTTCGCGTGTGTGGGAATTCATCTAGGCTTTC
ATTGCCTTCATTATTATTGCGTTTACTCGGTACTTACATCTTACATGTT-CCCCATTTGTAAATAGCTTCAGAATTTAGG
CAGTTTTGGGTGCCTCCCGTTGCATTTGGTAGGTTTCCACTATGCTCAAATGCAATTTCTTTGGGACAGGCAACACAAAT
TTTGAGATAGGA-CCCATACCTTCTCAGCAATTCATCTCACCTTCTACAACT---TATGTTTTTACAATATCATCCATTT
ATGCATGCTTGCTAGCACAAAAAC-TATTAGCAGAACATCCAAAGATATTT-AATCCAACGGAAGGAACATACACAGCTT
GTAAACTGAAGACATTTGATTGTTCAGTATCTAGAGAGATGTAGATCTCCTATGAAGCATTAGCCACAAGCCTGTAACGA
CTGTGGTTACCCTTTACTACTAGAACATCTGAATTTTGAAAGCGCCAATGCTATTCAGCTTTTACAAGAAAGTTGGGTTG
TTTACTTGATCCGTAAGATGCATTGTCAGAGCAATACATTAGATGCACTTAGAATGCTATATCGTTTGCTGGATTGTTGA
ACTCTGTGCCTTCATTGTTGTGAGACCTGCAATCATAAGCAATTGCTATTGTTTTGATCTAATCTCCTGGATAATGAAGG
CATTTGCCAAGGCACCAGTTCGGGAGTCTGCAGGGGAAGATGTTCCCAGCATACTTCATGTTGATATCGGTGTGTTCAGC
TATATCGGTTGCAGCATTTGCATACCTCAACCCATGGAAGACAGCATCAACTGTTGAGCGTTACCAGCTTGGTTTCCTTC
TTGCTGCCCTCGGTTTTGACCTGTCCAACCTTCTGGTCTTCACCCCCATGACTATCGAGGTCAGTCCTTTACGTACTCAT
TAGT----------------------------------------------------------------------------
--------CAATTGCGACGATTAGTGAAGTTTCATTTTATAG--TCATATGTTGTTTAATGTCATAAAATATTGGTACAT
CTGTGATGACACACGGTCTTGGATTAACAGTTCCGTACAGAAATCACAGGCACATCCGGATTTCTGTTAGTGTTTGTAAT
AATATCATCGGTAGTGAACAAAAGTAACATGGTGGTTACCCCGCAA--AAAAACATGGTA---GGCCTTCGCAGCCTCGT
AGGCGATGCTGTTCTCGTACAGAGAATCATAATACATGGTGACACGGACTTGGTTGTGTAGTATATGTTTTTTTTTTGTG
GGTGTGT-------------------------------------------------------------------------
--------------AGTATATGTTATACGGCCTGCGAATCATACTGGTTGCTGGAAACAGCTATAGTGTGTGGTTTAAAG
TAGTAACCGTTCAGGGGGACTGGATCCTTGCCATGAGCTCAGAAGAACCTATGCTGTATGCAGCTGTTGATTCACAGTAG
CAACTTTGCTTGTCTTGCGCAGATGATGATGAAGAGGCACAAGATCGAGAAGGATCTTGGCATCGGTGGTGAGGTGGGAC
GGTCAAGGAATGCCGAGTTGGCAAAGACAAACCCTGCACTCGCAGCGATGAACAAGAAGTTCGGGATGATCCACGGGCTG
TCGTCCCTGGCAAACATCATGGCATTCGGCAGCCTGGCCATGCACTCGTGGTACCTAGCGAGCAAGCTTGAGTTGTGACT
GTTGAAAGTT-AAGTGATGAGTCCATGTAATGGCCTTTCTTCTCAGCTGGTGACAGGAGCTTATAGTCTAGGCTGTCTAC
AGCTAAAGAAAGAGTAGTGTGAAAACTTTGCATCTGATGTTGTGACTTGGGATAATAATGTACAGAGTGCAAGGAGTGTC
TAGCTGTTTAATAATGTGCAGGAGCGCAGAAACTCTGCTAGAATCAGTTTATCTTTTACAGATGATGATCTGCGTATGAA
ACGGGTGTAAACTGGTATTGGCCACGAATGGTTGAAGATGG-------------------TGCTATAGCAAATGACATTC
CGAAGGAATTTGGAAGAAG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAAAAACGATGGACACATCTCAGTAGCACACAACCAGGGGATGATGTAAACCATGAACGGCTG
GCAG-GGGCTCCG-TTCGTAGATGGCACCTCTGCTTTTTGCTTTTTTCTAATCCTGCATGCAAGCTTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------SS------------S---------
------------------S--------------------S---SS--------S--S--------S--------------
S---------------------------S------------------S--------------------S--------S--
-----------------------------------SS-S-----------------------------------S-----
----------------------------------------S---------------------------------S-----
---------SS---------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------------------------------------------------S--S-S--SSS-----
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------S------------------------------SS-----S----------S----
---------------------------------------------S----------------------------------
--------------------------------------------SS----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--S--------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
----------------------------------S-----------------SSS-----------------S-------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-------------------------S-----------------S------------------------------------
---------------------------------------SS---------------------------------------
-----------------------S--------------------------------------------------------
-----------S--------------------S-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------------S------------S----------------------------------------------------
-----------------S------------------------------S-------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SS------------SSS-----------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-----------------------------------------S------------------
-----------------------------------------------S--------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------------------------SSSSSSSSSSSSSSSSSSS--------------------
-SSS----------------SS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S------S---
-----------------------------------------S-------------SS-----------SSS----S---S
S-S---S----S-----S-SSS-SSS-S-S---SSS-S-----------------------------------------S
----------S-------S-------S----------S-----------------S---SSSSSSSSSSS-SSSS---S-
-S-S-------S--S----------SS---S--SS------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_71
---------------------------------------------------TCGACCATGGAGCTTTTCCC---------
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------------------------------------------------------------------
>reverse_2172
--------------------------------------------------------------------------------
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-----------ACACCAGTTCGGGAGTCTG--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAAGGAACTGCACGAGAGCT----------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2349
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------TCTTCTGGTCTTCACCCCCA--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_1019
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AAGGAACTGCACGAGAGCTA---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2415
--------------------------------------------------------------------------------
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--------------AGGTCACATTACCCTTTTTGCC--------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_2193
--------------------------------------------------------------------------------
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--------------CCAGTTCGGGAGTCTGCAA-----------------------------------------------
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------------------------------------------------------------------
>reverse_4381
--------------------------------------------------------------------------------
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------------------------------------------------------------GCATCTAAGCTTGTGCGACG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
