Multiple sequence alignment - TraesCS4D01G132000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G132000 chr4D 100.000 2684 0 0 1 2684 118575079 118577762 0.000000e+00 4957.0
1 TraesCS4D01G132000 chr4D 93.773 273 16 1 186 458 22687599 22687328 2.490000e-110 409.0
2 TraesCS4D01G132000 chr4B 93.895 2162 82 22 459 2592 181005342 181007481 0.000000e+00 3216.0
3 TraesCS4D01G132000 chr4A 94.023 1874 70 23 455 2305 454764379 454762525 0.000000e+00 2802.0
4 TraesCS4D01G132000 chr4A 89.598 423 21 6 1018 1438 39719454 39719855 1.420000e-142 516.0
5 TraesCS4D01G132000 chr4A 100.000 47 0 0 2638 2684 454760596 454760550 1.320000e-13 87.9
6 TraesCS4D01G132000 chr7B 92.701 411 18 1 1031 1441 6961752 6962150 1.380000e-162 582.0
7 TraesCS4D01G132000 chr7B 91.549 426 22 3 1018 1441 745073015 745073428 2.320000e-160 575.0
8 TraesCS4D01G132000 chr7B 93.116 276 19 0 183 458 711065475 711065750 3.220000e-109 405.0
9 TraesCS4D01G132000 chr7B 98.295 176 3 0 8 183 493504875 493505050 2.600000e-80 309.0
10 TraesCS4D01G132000 chr6A 91.408 419 24 1 1023 1441 245231407 245231001 5.020000e-157 564.0
11 TraesCS4D01G132000 chr6A 90.793 391 21 8 1018 1405 62869510 62869888 2.380000e-140 508.0
12 TraesCS4D01G132000 chr6A 88.783 419 25 2 1023 1441 53689310 53688914 6.680000e-136 494.0
13 TraesCS4D01G132000 chr6A 92.199 282 22 0 183 464 374964891 374965172 1.500000e-107 399.0
14 TraesCS4D01G132000 chr3A 91.169 419 16 2 1023 1441 628782002 628781605 1.400000e-152 549.0
15 TraesCS4D01G132000 chr3A 89.499 419 23 3 1023 1441 37898816 37898419 6.630000e-141 510.0
16 TraesCS4D01G132000 chr3A 88.783 419 26 1 1023 1441 149408381 149407984 6.680000e-136 494.0
17 TraesCS4D01G132000 chr3A 93.818 275 17 0 183 457 196626223 196626497 5.350000e-112 414.0
18 TraesCS4D01G132000 chr3A 93.750 272 17 0 186 457 232190810 232190539 2.490000e-110 409.0
19 TraesCS4D01G132000 chr3A 93.727 271 17 0 186 456 566275581 566275311 8.950000e-110 407.0
20 TraesCS4D01G132000 chr3A 93.116 276 19 0 182 457 589932572 589932847 3.220000e-109 405.0
21 TraesCS4D01G132000 chr3A 86.235 247 27 4 1129 1369 666161411 666161166 7.370000e-66 261.0
22 TraesCS4D01G132000 chr5B 91.176 408 22 4 1034 1441 23308733 23308340 2.350000e-150 542.0
23 TraesCS4D01G132000 chr7A 89.671 426 21 3 1018 1441 458333926 458334330 3.060000e-144 521.0
24 TraesCS4D01G132000 chr7D 93.750 272 17 0 186 457 589262530 589262259 2.490000e-110 409.0
25 TraesCS4D01G132000 chr7D 97.283 184 3 2 11 194 2529060 2528879 7.220000e-81 311.0
26 TraesCS4D01G132000 chr6D 93.407 273 18 0 186 458 115514489 115514217 3.220000e-109 405.0
27 TraesCS4D01G132000 chr6D 98.315 178 3 0 9 186 470655396 470655219 2.010000e-81 313.0
28 TraesCS4D01G132000 chr3D 98.333 180 3 0 9 188 61049942 61050121 1.550000e-82 316.0
29 TraesCS4D01G132000 chr3D 98.864 176 2 0 8 183 133998250 133998075 5.580000e-82 315.0
30 TraesCS4D01G132000 chr3D 97.778 180 4 0 11 190 240009299 240009478 7.220000e-81 311.0
31 TraesCS4D01G132000 chr2D 98.857 175 2 0 9 183 373147893 373148067 2.010000e-81 313.0
32 TraesCS4D01G132000 chr2D 97.802 182 3 1 5 186 503882203 503882023 2.010000e-81 313.0
33 TraesCS4D01G132000 chr2D 97.790 181 3 1 7 186 503314928 503314748 7.220000e-81 311.0
34 TraesCS4D01G132000 chr3B 93.919 148 5 4 1297 1441 791023535 791023681 1.250000e-53 220.0
35 TraesCS4D01G132000 chr3B 89.937 159 10 6 1286 1441 791026710 791026555 1.630000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G132000 chr4D 118575079 118577762 2683 False 4957.00 4957 100.0000 1 2684 1 chr4D.!!$F1 2683
1 TraesCS4D01G132000 chr4B 181005342 181007481 2139 False 3216.00 3216 93.8950 459 2592 1 chr4B.!!$F1 2133
2 TraesCS4D01G132000 chr4A 454760550 454764379 3829 True 1444.95 2802 97.0115 455 2684 2 chr4A.!!$R1 2229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 923 0.034616 CCATTCGCATCCTCCTCCTC 59.965 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2355 0.180406 ACAGGACTTGTTTCACCGCT 59.82 50.0 0.0 0.0 36.31 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.021229 GGTTTATCTTAGGGGGTGTTTGG 58.979 47.826 0.00 0.00 0.00 3.28
23 24 4.509663 GGTTTATCTTAGGGGGTGTTTGGT 60.510 45.833 0.00 0.00 0.00 3.67
24 25 5.081728 GTTTATCTTAGGGGGTGTTTGGTT 58.918 41.667 0.00 0.00 0.00 3.67
25 26 2.963599 TCTTAGGGGGTGTTTGGTTC 57.036 50.000 0.00 0.00 0.00 3.62
26 27 2.136863 TCTTAGGGGGTGTTTGGTTCA 58.863 47.619 0.00 0.00 0.00 3.18
27 28 2.107552 TCTTAGGGGGTGTTTGGTTCAG 59.892 50.000 0.00 0.00 0.00 3.02
28 29 1.822425 TAGGGGGTGTTTGGTTCAGA 58.178 50.000 0.00 0.00 0.00 3.27
29 30 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
30 31 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
31 32 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
32 33 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
33 34 2.422945 GGGGTGTTTGGTTCAGAAGTCT 60.423 50.000 0.00 0.00 0.00 3.24
34 35 3.288092 GGGTGTTTGGTTCAGAAGTCTT 58.712 45.455 0.00 0.00 0.00 3.01
35 36 4.457466 GGGTGTTTGGTTCAGAAGTCTTA 58.543 43.478 0.00 0.00 0.00 2.10
36 37 4.515567 GGGTGTTTGGTTCAGAAGTCTTAG 59.484 45.833 0.00 0.00 0.00 2.18
37 38 4.515567 GGTGTTTGGTTCAGAAGTCTTAGG 59.484 45.833 0.00 0.00 0.00 2.69
38 39 5.365619 GTGTTTGGTTCAGAAGTCTTAGGA 58.634 41.667 0.00 0.00 0.00 2.94
39 40 5.236695 GTGTTTGGTTCAGAAGTCTTAGGAC 59.763 44.000 0.00 0.00 42.41 3.85
98 99 9.106070 CTCTCTAGTAGAGTCTTTTTCTAGTCC 57.894 40.741 23.51 0.00 45.85 3.85
99 100 8.048514 TCTCTAGTAGAGTCTTTTTCTAGTCCC 58.951 40.741 23.51 0.00 42.83 4.46
100 101 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
101 102 6.844097 AGTAGAGTCTTTTTCTAGTCCCTG 57.156 41.667 0.00 0.00 0.00 4.45
102 103 6.316513 AGTAGAGTCTTTTTCTAGTCCCTGT 58.683 40.000 0.00 0.00 0.00 4.00
103 104 7.468496 AGTAGAGTCTTTTTCTAGTCCCTGTA 58.532 38.462 0.00 0.00 0.00 2.74
104 105 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
105 106 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
106 107 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
107 108 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
113 114 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
114 115 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
115 116 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
116 117 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
117 118 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
118 119 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
119 120 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
120 121 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
121 122 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
122 123 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
123 124 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
124 125 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
125 126 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
126 127 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
127 128 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
128 129 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
129 130 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
130 131 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
131 132 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
132 133 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
133 134 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
134 135 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
135 136 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
136 137 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
137 138 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
138 139 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
139 140 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
140 141 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
141 142 4.023450 CGTTTGGTTCCTAGGGACTTTTTC 60.023 45.833 20.08 3.31 41.75 2.29
142 143 5.138276 GTTTGGTTCCTAGGGACTTTTTCT 58.862 41.667 20.08 0.00 41.75 2.52
143 144 6.301486 GTTTGGTTCCTAGGGACTTTTTCTA 58.699 40.000 20.08 0.00 41.75 2.10
144 145 5.757099 TGGTTCCTAGGGACTTTTTCTAG 57.243 43.478 20.08 0.00 41.75 2.43
145 146 5.160386 TGGTTCCTAGGGACTTTTTCTAGT 58.840 41.667 20.08 0.00 41.75 2.57
146 147 5.247792 TGGTTCCTAGGGACTTTTTCTAGTC 59.752 44.000 20.08 0.00 43.05 2.59
147 148 5.484644 GGTTCCTAGGGACTTTTTCTAGTCT 59.515 44.000 20.08 0.00 43.26 3.24
148 149 6.351202 GGTTCCTAGGGACTTTTTCTAGTCTC 60.351 46.154 20.08 0.00 44.42 3.36
152 153 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
153 154 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
154 155 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
175 176 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
176 177 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
177 178 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
178 179 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
179 180 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
180 181 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
181 182 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
182 183 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
183 184 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
184 185 1.146152 CCTGAACCAAACACCCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
185 186 2.514803 CTGAACCAAACACCCCCTAAG 58.485 52.381 0.00 0.00 0.00 2.18
186 187 1.254026 GAACCAAACACCCCCTAAGC 58.746 55.000 0.00 0.00 0.00 3.09
187 188 0.178944 AACCAAACACCCCCTAAGCC 60.179 55.000 0.00 0.00 0.00 4.35
188 189 1.071909 ACCAAACACCCCCTAAGCCT 61.072 55.000 0.00 0.00 0.00 4.58
189 190 0.323451 CCAAACACCCCCTAAGCCTC 60.323 60.000 0.00 0.00 0.00 4.70
190 191 0.698818 CAAACACCCCCTAAGCCTCT 59.301 55.000 0.00 0.00 0.00 3.69
191 192 0.992695 AAACACCCCCTAAGCCTCTC 59.007 55.000 0.00 0.00 0.00 3.20
192 193 0.178873 AACACCCCCTAAGCCTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
193 194 0.618968 ACACCCCCTAAGCCTCTCAG 60.619 60.000 0.00 0.00 0.00 3.35
194 195 1.690985 ACCCCCTAAGCCTCTCAGC 60.691 63.158 0.00 0.00 0.00 4.26
195 196 1.690633 CCCCCTAAGCCTCTCAGCA 60.691 63.158 0.00 0.00 34.23 4.41
196 197 1.059006 CCCCCTAAGCCTCTCAGCAT 61.059 60.000 0.00 0.00 34.23 3.79
197 198 0.396060 CCCCTAAGCCTCTCAGCATC 59.604 60.000 0.00 0.00 34.23 3.91
198 199 1.126488 CCCTAAGCCTCTCAGCATCA 58.874 55.000 0.00 0.00 34.23 3.07
199 200 1.202627 CCCTAAGCCTCTCAGCATCAC 60.203 57.143 0.00 0.00 34.23 3.06
200 201 1.483827 CCTAAGCCTCTCAGCATCACA 59.516 52.381 0.00 0.00 34.23 3.58
201 202 2.093288 CCTAAGCCTCTCAGCATCACAA 60.093 50.000 0.00 0.00 34.23 3.33
202 203 2.110901 AAGCCTCTCAGCATCACAAG 57.889 50.000 0.00 0.00 34.23 3.16
203 204 0.392729 AGCCTCTCAGCATCACAAGC 60.393 55.000 0.00 0.00 34.23 4.01
204 205 0.675837 GCCTCTCAGCATCACAAGCA 60.676 55.000 0.00 0.00 0.00 3.91
205 206 2.017623 GCCTCTCAGCATCACAAGCAT 61.018 52.381 0.00 0.00 0.00 3.79
206 207 1.671328 CCTCTCAGCATCACAAGCATG 59.329 52.381 0.00 0.00 0.00 4.06
207 208 2.357075 CTCTCAGCATCACAAGCATGT 58.643 47.619 0.00 0.00 41.61 3.21
208 209 2.352034 CTCTCAGCATCACAAGCATGTC 59.648 50.000 0.00 0.00 37.82 3.06
209 210 1.400846 CTCAGCATCACAAGCATGTCC 59.599 52.381 0.00 0.00 37.82 4.02
210 211 0.454600 CAGCATCACAAGCATGTCCC 59.545 55.000 0.00 0.00 37.82 4.46
211 212 0.330604 AGCATCACAAGCATGTCCCT 59.669 50.000 0.00 0.00 37.82 4.20
212 213 1.180029 GCATCACAAGCATGTCCCTT 58.820 50.000 0.00 0.00 37.82 3.95
213 214 1.547372 GCATCACAAGCATGTCCCTTT 59.453 47.619 0.00 0.00 37.82 3.11
214 215 2.028748 GCATCACAAGCATGTCCCTTTT 60.029 45.455 0.00 0.00 37.82 2.27
215 216 3.555586 GCATCACAAGCATGTCCCTTTTT 60.556 43.478 0.00 0.00 37.82 1.94
216 217 4.321899 GCATCACAAGCATGTCCCTTTTTA 60.322 41.667 0.00 0.00 37.82 1.52
217 218 5.625197 GCATCACAAGCATGTCCCTTTTTAT 60.625 40.000 0.00 0.00 37.82 1.40
218 219 6.405731 GCATCACAAGCATGTCCCTTTTTATA 60.406 38.462 0.00 0.00 37.82 0.98
219 220 7.546358 CATCACAAGCATGTCCCTTTTTATAA 58.454 34.615 0.00 0.00 37.82 0.98
220 221 7.156876 TCACAAGCATGTCCCTTTTTATAAG 57.843 36.000 0.00 0.00 37.82 1.73
221 222 6.152661 TCACAAGCATGTCCCTTTTTATAAGG 59.847 38.462 0.00 0.00 37.82 2.69
222 223 5.105351 ACAAGCATGTCCCTTTTTATAAGGC 60.105 40.000 0.00 0.00 33.41 4.35
223 224 3.960755 AGCATGTCCCTTTTTATAAGGCC 59.039 43.478 0.00 0.00 36.10 5.19
224 225 3.069586 GCATGTCCCTTTTTATAAGGCCC 59.930 47.826 0.00 0.00 36.10 5.80
225 226 3.391799 TGTCCCTTTTTATAAGGCCCC 57.608 47.619 0.00 0.00 36.10 5.80
226 227 2.304092 GTCCCTTTTTATAAGGCCCCG 58.696 52.381 0.00 0.00 36.10 5.73
227 228 1.037493 CCCTTTTTATAAGGCCCCGC 58.963 55.000 0.00 0.00 36.10 6.13
228 229 1.411074 CCCTTTTTATAAGGCCCCGCT 60.411 52.381 0.00 0.00 36.10 5.52
229 230 2.384828 CCTTTTTATAAGGCCCCGCTT 58.615 47.619 0.00 0.00 0.00 4.68
230 231 2.764010 CCTTTTTATAAGGCCCCGCTTT 59.236 45.455 0.00 0.00 0.00 3.51
231 232 3.430236 CCTTTTTATAAGGCCCCGCTTTG 60.430 47.826 0.00 0.00 0.00 2.77
232 233 2.810870 TTTATAAGGCCCCGCTTTGA 57.189 45.000 0.00 0.00 0.00 2.69
233 234 2.810870 TTATAAGGCCCCGCTTTGAA 57.189 45.000 0.00 0.00 0.00 2.69
234 235 2.810870 TATAAGGCCCCGCTTTGAAA 57.189 45.000 0.00 0.00 0.00 2.69
235 236 1.931635 ATAAGGCCCCGCTTTGAAAA 58.068 45.000 0.00 0.00 0.00 2.29
236 237 1.253100 TAAGGCCCCGCTTTGAAAAG 58.747 50.000 0.00 0.00 39.03 2.27
237 238 1.471829 AAGGCCCCGCTTTGAAAAGG 61.472 55.000 0.00 0.00 36.53 3.11
238 239 2.207229 GGCCCCGCTTTGAAAAGGT 61.207 57.895 5.02 0.00 36.53 3.50
239 240 1.006220 GCCCCGCTTTGAAAAGGTG 60.006 57.895 5.02 0.00 36.53 4.00
240 241 1.006220 CCCCGCTTTGAAAAGGTGC 60.006 57.895 5.02 0.00 36.53 5.01
241 242 1.739049 CCCGCTTTGAAAAGGTGCA 59.261 52.632 5.02 0.00 36.53 4.57
242 243 0.318120 CCCGCTTTGAAAAGGTGCAT 59.682 50.000 5.02 0.00 36.53 3.96
243 244 1.421382 CCGCTTTGAAAAGGTGCATG 58.579 50.000 5.02 0.00 36.53 4.06
244 245 0.785979 CGCTTTGAAAAGGTGCATGC 59.214 50.000 11.82 11.82 36.53 4.06
245 246 1.868469 GCTTTGAAAAGGTGCATGCA 58.132 45.000 18.46 18.46 36.53 3.96
246 247 2.419667 GCTTTGAAAAGGTGCATGCAT 58.580 42.857 25.64 7.13 36.53 3.96
247 248 2.158841 GCTTTGAAAAGGTGCATGCATG 59.841 45.455 25.64 22.70 36.53 4.06
248 249 2.158841 CTTTGAAAAGGTGCATGCATGC 59.841 45.455 38.71 38.71 41.84 4.06
261 262 4.271590 CATGCATGCAACCATTTCATTG 57.728 40.909 26.68 10.40 0.00 2.82
262 263 2.701107 TGCATGCAACCATTTCATTGG 58.299 42.857 20.30 0.00 42.82 3.16
273 274 5.943706 CCATTTCATTGGTTGCATTGAAA 57.056 34.783 0.00 0.00 40.99 2.69
274 275 5.933790 CCATTTCATTGGTTGCATTGAAAG 58.066 37.500 1.50 0.00 40.32 2.62
275 276 5.387279 CATTTCATTGGTTGCATTGAAAGC 58.613 37.500 1.50 0.00 40.32 3.51
276 277 3.042871 TCATTGGTTGCATTGAAAGCC 57.957 42.857 4.15 0.00 0.00 4.35
277 278 2.367894 TCATTGGTTGCATTGAAAGCCA 59.632 40.909 4.15 0.15 0.00 4.75
278 279 3.008157 TCATTGGTTGCATTGAAAGCCAT 59.992 39.130 4.15 0.00 0.00 4.40
279 280 3.488778 TTGGTTGCATTGAAAGCCATT 57.511 38.095 4.15 0.00 0.00 3.16
280 281 2.768698 TGGTTGCATTGAAAGCCATTG 58.231 42.857 4.15 0.00 0.00 2.82
281 282 2.104451 TGGTTGCATTGAAAGCCATTGT 59.896 40.909 4.15 0.00 0.00 2.71
282 283 3.140623 GGTTGCATTGAAAGCCATTGTT 58.859 40.909 0.00 0.00 0.00 2.83
283 284 3.058777 GGTTGCATTGAAAGCCATTGTTG 60.059 43.478 0.00 0.00 0.00 3.33
284 285 3.472283 TGCATTGAAAGCCATTGTTGT 57.528 38.095 0.00 0.00 0.00 3.32
285 286 3.806380 TGCATTGAAAGCCATTGTTGTT 58.194 36.364 0.00 0.00 0.00 2.83
286 287 3.560481 TGCATTGAAAGCCATTGTTGTTG 59.440 39.130 0.00 0.00 0.00 3.33
287 288 3.058777 GCATTGAAAGCCATTGTTGTTGG 60.059 43.478 0.00 0.00 37.31 3.77
288 289 3.902881 TTGAAAGCCATTGTTGTTGGT 57.097 38.095 0.00 0.00 36.57 3.67
289 290 3.176552 TGAAAGCCATTGTTGTTGGTG 57.823 42.857 0.00 0.00 36.57 4.17
290 291 1.866601 GAAAGCCATTGTTGTTGGTGC 59.133 47.619 0.00 0.00 36.57 5.01
291 292 0.106521 AAGCCATTGTTGTTGGTGCC 59.893 50.000 0.00 0.00 36.57 5.01
292 293 1.047596 AGCCATTGTTGTTGGTGCCA 61.048 50.000 0.00 0.00 36.57 4.92
293 294 0.035176 GCCATTGTTGTTGGTGCCAT 59.965 50.000 0.00 0.00 36.57 4.40
294 295 1.798283 CCATTGTTGTTGGTGCCATG 58.202 50.000 0.00 0.00 0.00 3.66
295 296 1.608542 CCATTGTTGTTGGTGCCATGG 60.609 52.381 7.63 7.63 0.00 3.66
296 297 0.035176 ATTGTTGTTGGTGCCATGGC 59.965 50.000 30.54 30.54 42.35 4.40
297 298 2.037620 TTGTTGTTGGTGCCATGGCC 62.038 55.000 33.44 23.31 41.09 5.36
298 299 3.301554 TTGTTGGTGCCATGGCCG 61.302 61.111 33.44 0.00 41.09 6.13
301 302 4.292145 TTGGTGCCATGGCCGGAA 62.292 61.111 33.44 19.30 41.09 4.30
302 303 3.817210 TTGGTGCCATGGCCGGAAA 62.817 57.895 33.44 19.01 41.09 3.13
303 304 2.994417 GGTGCCATGGCCGGAAAA 60.994 61.111 33.44 11.50 41.09 2.29
304 305 2.358372 GGTGCCATGGCCGGAAAAT 61.358 57.895 33.44 0.00 41.09 1.82
305 306 1.596408 GTGCCATGGCCGGAAAATT 59.404 52.632 33.44 0.00 41.09 1.82
306 307 0.820871 GTGCCATGGCCGGAAAATTA 59.179 50.000 33.44 9.03 41.09 1.40
307 308 1.205893 GTGCCATGGCCGGAAAATTAA 59.794 47.619 33.44 8.21 41.09 1.40
308 309 2.114616 TGCCATGGCCGGAAAATTAAT 58.885 42.857 33.44 0.00 41.09 1.40
309 310 3.068873 GTGCCATGGCCGGAAAATTAATA 59.931 43.478 33.44 7.40 41.09 0.98
310 311 3.068873 TGCCATGGCCGGAAAATTAATAC 59.931 43.478 33.44 0.87 41.09 1.89
311 312 3.068873 GCCATGGCCGGAAAATTAATACA 59.931 43.478 27.24 0.00 34.56 2.29
312 313 4.616953 CCATGGCCGGAAAATTAATACAC 58.383 43.478 5.05 0.00 0.00 2.90
313 314 4.340950 CCATGGCCGGAAAATTAATACACT 59.659 41.667 5.05 0.00 0.00 3.55
314 315 5.163457 CCATGGCCGGAAAATTAATACACTT 60.163 40.000 5.05 0.00 0.00 3.16
315 316 5.570234 TGGCCGGAAAATTAATACACTTC 57.430 39.130 5.05 0.00 0.00 3.01
316 317 5.010933 TGGCCGGAAAATTAATACACTTCA 58.989 37.500 5.05 0.00 0.00 3.02
317 318 5.654650 TGGCCGGAAAATTAATACACTTCAT 59.345 36.000 5.05 0.00 0.00 2.57
318 319 5.977129 GGCCGGAAAATTAATACACTTCATG 59.023 40.000 5.05 0.00 0.00 3.07
319 320 5.458779 GCCGGAAAATTAATACACTTCATGC 59.541 40.000 5.05 0.00 0.00 4.06
320 321 5.681105 CCGGAAAATTAATACACTTCATGCG 59.319 40.000 0.00 0.00 0.00 4.73
321 322 6.255215 CGGAAAATTAATACACTTCATGCGT 58.745 36.000 0.00 0.00 0.00 5.24
322 323 6.194508 CGGAAAATTAATACACTTCATGCGTG 59.805 38.462 11.82 11.82 38.32 5.34
323 324 6.020678 GGAAAATTAATACACTTCATGCGTGC 60.021 38.462 12.93 0.00 35.84 5.34
324 325 5.818136 AATTAATACACTTCATGCGTGCT 57.182 34.783 12.93 5.55 35.84 4.40
325 326 5.818136 ATTAATACACTTCATGCGTGCTT 57.182 34.783 12.93 10.04 35.84 3.91
326 327 5.621197 TTAATACACTTCATGCGTGCTTT 57.379 34.783 12.93 9.91 35.84 3.51
327 328 4.503741 AATACACTTCATGCGTGCTTTT 57.496 36.364 12.93 4.32 35.84 2.27
328 329 2.869233 ACACTTCATGCGTGCTTTTT 57.131 40.000 12.93 0.00 35.84 1.94
329 330 2.731217 ACACTTCATGCGTGCTTTTTC 58.269 42.857 12.93 0.00 35.84 2.29
330 331 2.098934 ACACTTCATGCGTGCTTTTTCA 59.901 40.909 12.93 0.00 35.84 2.69
331 332 3.243501 ACACTTCATGCGTGCTTTTTCAT 60.244 39.130 12.93 0.00 35.84 2.57
332 333 3.737266 CACTTCATGCGTGCTTTTTCATT 59.263 39.130 0.00 0.00 0.00 2.57
333 334 3.737266 ACTTCATGCGTGCTTTTTCATTG 59.263 39.130 0.00 0.00 0.00 2.82
334 335 2.674954 TCATGCGTGCTTTTTCATTGG 58.325 42.857 0.00 0.00 0.00 3.16
335 336 1.127213 CATGCGTGCTTTTTCATTGGC 59.873 47.619 0.00 0.00 0.00 4.52
336 337 0.388659 TGCGTGCTTTTTCATTGGCT 59.611 45.000 0.00 0.00 0.00 4.75
337 338 0.785979 GCGTGCTTTTTCATTGGCTG 59.214 50.000 0.00 0.00 0.00 4.85
338 339 0.785979 CGTGCTTTTTCATTGGCTGC 59.214 50.000 0.00 0.00 0.00 5.25
339 340 1.868469 GTGCTTTTTCATTGGCTGCA 58.132 45.000 0.50 0.00 0.00 4.41
340 341 2.419667 GTGCTTTTTCATTGGCTGCAT 58.580 42.857 0.50 0.00 0.00 3.96
341 342 2.158841 GTGCTTTTTCATTGGCTGCATG 59.841 45.455 0.50 0.00 0.00 4.06
342 343 1.129811 GCTTTTTCATTGGCTGCATGC 59.870 47.619 11.82 11.82 41.94 4.06
343 344 2.695359 CTTTTTCATTGGCTGCATGCT 58.305 42.857 20.33 0.00 42.39 3.79
344 345 2.843401 TTTTCATTGGCTGCATGCTT 57.157 40.000 20.33 0.00 42.39 3.91
345 346 2.087501 TTTCATTGGCTGCATGCTTG 57.912 45.000 20.33 12.76 42.39 4.01
346 347 0.970640 TTCATTGGCTGCATGCTTGT 59.029 45.000 20.33 0.00 42.39 3.16
347 348 0.245266 TCATTGGCTGCATGCTTGTG 59.755 50.000 20.33 9.14 42.39 3.33
348 349 0.245266 CATTGGCTGCATGCTTGTGA 59.755 50.000 20.33 2.61 42.39 3.58
349 350 0.970640 ATTGGCTGCATGCTTGTGAA 59.029 45.000 20.33 5.77 42.39 3.18
350 351 0.751452 TTGGCTGCATGCTTGTGAAA 59.249 45.000 20.33 3.26 42.39 2.69
351 352 0.315886 TGGCTGCATGCTTGTGAAAG 59.684 50.000 20.33 6.92 42.39 2.62
352 353 0.599558 GGCTGCATGCTTGTGAAAGA 59.400 50.000 20.33 0.00 42.39 2.52
353 354 1.402456 GGCTGCATGCTTGTGAAAGAG 60.402 52.381 20.33 5.36 42.39 2.85
354 355 1.268899 GCTGCATGCTTGTGAAAGAGT 59.731 47.619 20.33 0.00 38.95 3.24
355 356 2.921069 GCTGCATGCTTGTGAAAGAGTG 60.921 50.000 20.33 0.00 38.95 3.51
356 357 1.001048 TGCATGCTTGTGAAAGAGTGC 60.001 47.619 20.33 7.93 34.46 4.40
357 358 1.001048 GCATGCTTGTGAAAGAGTGCA 60.001 47.619 11.37 0.00 34.22 4.57
358 359 2.352421 GCATGCTTGTGAAAGAGTGCAT 60.352 45.455 11.37 0.00 41.08 3.96
359 360 3.859627 GCATGCTTGTGAAAGAGTGCATT 60.860 43.478 11.37 0.00 38.82 3.56
360 361 3.358707 TGCTTGTGAAAGAGTGCATTG 57.641 42.857 0.00 0.00 0.00 2.82
361 362 2.950975 TGCTTGTGAAAGAGTGCATTGA 59.049 40.909 0.00 0.00 0.00 2.57
362 363 3.380954 TGCTTGTGAAAGAGTGCATTGAA 59.619 39.130 0.00 0.00 0.00 2.69
363 364 4.142204 TGCTTGTGAAAGAGTGCATTGAAA 60.142 37.500 0.00 0.00 0.00 2.69
364 365 4.443394 GCTTGTGAAAGAGTGCATTGAAAG 59.557 41.667 0.00 0.00 0.00 2.62
365 366 5.581126 TTGTGAAAGAGTGCATTGAAAGT 57.419 34.783 0.00 0.00 0.00 2.66
366 367 4.923893 TGTGAAAGAGTGCATTGAAAGTG 58.076 39.130 0.00 0.00 0.00 3.16
367 368 4.639755 TGTGAAAGAGTGCATTGAAAGTGA 59.360 37.500 0.00 0.00 0.00 3.41
368 369 5.125257 TGTGAAAGAGTGCATTGAAAGTGAA 59.875 36.000 0.00 0.00 0.00 3.18
369 370 6.035843 GTGAAAGAGTGCATTGAAAGTGAAA 58.964 36.000 0.00 0.00 0.00 2.69
370 371 6.698766 GTGAAAGAGTGCATTGAAAGTGAAAT 59.301 34.615 0.00 0.00 0.00 2.17
371 372 6.698329 TGAAAGAGTGCATTGAAAGTGAAATG 59.302 34.615 0.00 0.00 36.95 2.32
372 373 6.395426 AAGAGTGCATTGAAAGTGAAATGA 57.605 33.333 0.00 0.00 36.13 2.57
373 374 6.395426 AGAGTGCATTGAAAGTGAAATGAA 57.605 33.333 0.00 0.00 36.13 2.57
374 375 6.808829 AGAGTGCATTGAAAGTGAAATGAAA 58.191 32.000 0.00 0.00 36.13 2.69
375 376 6.921857 AGAGTGCATTGAAAGTGAAATGAAAG 59.078 34.615 0.00 0.00 36.13 2.62
376 377 6.808829 AGTGCATTGAAAGTGAAATGAAAGA 58.191 32.000 0.00 0.00 36.13 2.52
377 378 7.267128 AGTGCATTGAAAGTGAAATGAAAGAA 58.733 30.769 0.00 0.00 36.13 2.52
378 379 7.929785 AGTGCATTGAAAGTGAAATGAAAGAAT 59.070 29.630 0.00 0.00 36.13 2.40
379 380 8.553696 GTGCATTGAAAGTGAAATGAAAGAATT 58.446 29.630 0.00 0.00 36.13 2.17
380 381 9.761504 TGCATTGAAAGTGAAATGAAAGAATTA 57.238 25.926 0.00 0.00 36.13 1.40
388 389 8.976986 AGTGAAATGAAAGAATTAATGTGAGC 57.023 30.769 0.00 0.00 0.00 4.26
389 390 8.579006 AGTGAAATGAAAGAATTAATGTGAGCA 58.421 29.630 0.00 0.00 0.00 4.26
390 391 9.195411 GTGAAATGAAAGAATTAATGTGAGCAA 57.805 29.630 0.00 0.00 0.00 3.91
391 392 9.761504 TGAAATGAAAGAATTAATGTGAGCAAA 57.238 25.926 0.00 0.00 0.00 3.68
406 407 9.577110 AATGTGAGCAAATTATTATGTGTCTTG 57.423 29.630 0.00 0.00 0.00 3.02
407 408 8.334263 TGTGAGCAAATTATTATGTGTCTTGA 57.666 30.769 0.00 0.00 0.00 3.02
408 409 8.959548 TGTGAGCAAATTATTATGTGTCTTGAT 58.040 29.630 0.00 0.00 0.00 2.57
409 410 9.443283 GTGAGCAAATTATTATGTGTCTTGATC 57.557 33.333 0.00 0.00 0.00 2.92
410 411 9.399797 TGAGCAAATTATTATGTGTCTTGATCT 57.600 29.630 0.00 0.00 31.03 2.75
411 412 9.875675 GAGCAAATTATTATGTGTCTTGATCTC 57.124 33.333 0.00 0.00 0.00 2.75
412 413 9.399797 AGCAAATTATTATGTGTCTTGATCTCA 57.600 29.630 0.00 0.00 0.00 3.27
413 414 9.661187 GCAAATTATTATGTGTCTTGATCTCAG 57.339 33.333 0.00 0.00 0.00 3.35
421 422 9.591792 TTATGTGTCTTGATCTCAGATAAGTTG 57.408 33.333 0.00 0.00 0.00 3.16
422 423 6.997655 TGTGTCTTGATCTCAGATAAGTTGT 58.002 36.000 0.00 0.00 0.00 3.32
423 424 7.093354 TGTGTCTTGATCTCAGATAAGTTGTC 58.907 38.462 0.00 0.00 0.00 3.18
424 425 7.039434 TGTGTCTTGATCTCAGATAAGTTGTCT 60.039 37.037 0.00 0.00 0.00 3.41
425 426 7.816995 GTGTCTTGATCTCAGATAAGTTGTCTT 59.183 37.037 0.00 0.00 37.65 3.01
426 427 8.370940 TGTCTTGATCTCAGATAAGTTGTCTTT 58.629 33.333 0.00 0.00 35.36 2.52
427 428 9.862371 GTCTTGATCTCAGATAAGTTGTCTTTA 57.138 33.333 0.00 0.00 35.36 1.85
429 430 9.311916 CTTGATCTCAGATAAGTTGTCTTTAGG 57.688 37.037 0.00 0.00 35.36 2.69
430 431 7.268586 TGATCTCAGATAAGTTGTCTTTAGGC 58.731 38.462 0.00 0.00 35.36 3.93
431 432 5.978814 TCTCAGATAAGTTGTCTTTAGGCC 58.021 41.667 0.00 0.00 35.36 5.19
432 433 5.721960 TCTCAGATAAGTTGTCTTTAGGCCT 59.278 40.000 11.78 11.78 35.36 5.19
433 434 6.895756 TCTCAGATAAGTTGTCTTTAGGCCTA 59.104 38.462 8.91 8.91 35.36 3.93
434 435 7.399191 TCTCAGATAAGTTGTCTTTAGGCCTAA 59.601 37.037 21.68 21.68 35.36 2.69
435 436 8.090788 TCAGATAAGTTGTCTTTAGGCCTAAT 57.909 34.615 25.70 10.83 35.36 1.73
436 437 9.209048 TCAGATAAGTTGTCTTTAGGCCTAATA 57.791 33.333 25.70 14.28 35.36 0.98
437 438 9.832445 CAGATAAGTTGTCTTTAGGCCTAATAA 57.168 33.333 25.70 13.92 35.36 1.40
440 441 7.698506 AAGTTGTCTTTAGGCCTAATAAACC 57.301 36.000 25.70 12.16 0.00 3.27
441 442 6.185511 AGTTGTCTTTAGGCCTAATAAACCC 58.814 40.000 25.70 15.18 0.00 4.11
442 443 4.773013 TGTCTTTAGGCCTAATAAACCCG 58.227 43.478 25.70 8.69 0.00 5.28
443 444 4.132336 GTCTTTAGGCCTAATAAACCCGG 58.868 47.826 25.70 8.87 0.00 5.73
444 445 3.136992 TCTTTAGGCCTAATAAACCCGGG 59.863 47.826 25.70 22.25 0.00 5.73
445 446 0.766752 TAGGCCTAATAAACCCGGGC 59.233 55.000 24.08 1.96 41.93 6.13
446 447 1.895231 GGCCTAATAAACCCGGGCG 60.895 63.158 24.08 0.00 43.27 6.13
447 448 1.895231 GCCTAATAAACCCGGGCGG 60.895 63.158 24.08 10.75 33.30 6.13
448 449 1.831527 CCTAATAAACCCGGGCGGA 59.168 57.895 24.08 5.68 37.50 5.54
449 450 0.250166 CCTAATAAACCCGGGCGGAG 60.250 60.000 24.08 9.44 37.50 4.63
450 451 0.250166 CTAATAAACCCGGGCGGAGG 60.250 60.000 24.08 0.70 37.50 4.30
520 521 3.214023 TGGTGTGCCATGTTTTCCA 57.786 47.368 0.00 0.00 40.46 3.53
582 583 5.316987 AGGTGTTTCATTTCCTCCTTGTAG 58.683 41.667 0.00 0.00 0.00 2.74
583 584 5.070685 GGTGTTTCATTTCCTCCTTGTAGT 58.929 41.667 0.00 0.00 0.00 2.73
584 585 6.043938 AGGTGTTTCATTTCCTCCTTGTAGTA 59.956 38.462 0.00 0.00 0.00 1.82
643 644 4.246458 CACTCCTACCTAACTTTGTCTGC 58.754 47.826 0.00 0.00 0.00 4.26
744 746 0.859232 CCGACACGGTTTCTTCACTG 59.141 55.000 1.80 0.00 42.73 3.66
745 747 0.859232 CGACACGGTTTCTTCACTGG 59.141 55.000 0.00 0.00 0.00 4.00
746 748 1.805120 CGACACGGTTTCTTCACTGGT 60.805 52.381 0.00 0.00 0.00 4.00
747 749 2.544277 CGACACGGTTTCTTCACTGGTA 60.544 50.000 0.00 0.00 0.00 3.25
748 750 3.057734 GACACGGTTTCTTCACTGGTAG 58.942 50.000 0.00 0.00 0.00 3.18
749 751 2.433239 ACACGGTTTCTTCACTGGTAGT 59.567 45.455 0.00 0.00 0.00 2.73
762 764 0.828022 TGGTAGTGTATGCGAAGGGG 59.172 55.000 0.00 0.00 0.00 4.79
879 883 2.954318 CCAGCCACCAATTCTCCAATAG 59.046 50.000 0.00 0.00 0.00 1.73
917 921 0.469917 TTCCATTCGCATCCTCCTCC 59.530 55.000 0.00 0.00 0.00 4.30
918 922 0.399091 TCCATTCGCATCCTCCTCCT 60.399 55.000 0.00 0.00 0.00 3.69
919 923 0.034616 CCATTCGCATCCTCCTCCTC 59.965 60.000 0.00 0.00 0.00 3.71
979 983 1.407258 AGGAAGAAAGAGATCTCGCCG 59.593 52.381 16.97 0.00 32.19 6.46
1479 1486 3.771160 ATCGCCGCCTCCGTCTTT 61.771 61.111 0.00 0.00 0.00 2.52
1829 1841 0.847373 TAGGAGCGTGAGGAGGAGAT 59.153 55.000 0.00 0.00 0.00 2.75
2100 2113 5.122869 AGAGATTGATCAATGTGGTTTCACG 59.877 40.000 25.37 0.00 46.42 4.35
2152 2165 5.779241 TGGGTCTAGGTGATTCATTTTCT 57.221 39.130 0.00 0.00 0.00 2.52
2251 2284 7.440198 TGAGCTGGATATCATTTCTAAGACTG 58.560 38.462 4.83 0.00 0.00 3.51
2309 2348 7.595099 CAATCCAATTGCAATGACAGAAGTCG 61.595 42.308 13.82 0.00 39.37 4.18
2318 2357 2.517321 GACAGAAGTCGATGCAAAGC 57.483 50.000 0.00 0.00 34.60 3.51
2343 2382 1.131638 AACAAGTCCTGTGAGCCTGA 58.868 50.000 0.00 0.00 38.67 3.86
2375 2415 4.732065 TCCTTTTACGTCCCCAAAAGAAT 58.268 39.130 18.45 0.00 41.98 2.40
2387 2427 7.201661 CGTCCCCAAAAGAATCGATAAATAACA 60.202 37.037 0.00 0.00 0.00 2.41
2429 2471 9.530129 GAGAATTAACGGAAATGATATTTAGCG 57.470 33.333 0.00 0.00 0.00 4.26
2435 2477 4.919168 CGGAAATGATATTTAGCGGACGTA 59.081 41.667 0.00 0.00 0.00 3.57
2469 2511 0.924090 CTCGCAGCGAACCTTATCAC 59.076 55.000 20.04 0.00 34.74 3.06
2481 2523 0.866061 CTTATCACCGTCGCTGGTCG 60.866 60.000 0.00 0.00 41.38 4.79
2508 2550 3.054166 CACGAATGTTCACGTCAGGTTA 58.946 45.455 0.00 0.00 40.76 2.85
2528 2570 1.588824 CCATGTCACGGTGCAGCAAT 61.589 55.000 17.33 0.00 0.00 3.56
2535 2577 2.480555 GGTGCAGCAATCGTTCGG 59.519 61.111 11.86 0.00 0.00 4.30
2538 2580 0.237235 GTGCAGCAATCGTTCGGAAA 59.763 50.000 0.00 0.00 0.00 3.13
2567 2613 0.470456 ACCAGTGAACCCTGTACCGA 60.470 55.000 0.00 0.00 0.00 4.69
2594 2765 0.823460 CTCTCCTTCCTCTCACTGCC 59.177 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.021229 CCAAACACCCCCTAAGATAAACC 58.979 47.826 0.00 0.00 0.00 3.27
1 2 4.669700 ACCAAACACCCCCTAAGATAAAC 58.330 43.478 0.00 0.00 0.00 2.01
2 3 5.162969 TGAACCAAACACCCCCTAAGATAAA 60.163 40.000 0.00 0.00 0.00 1.40
3 4 4.354387 TGAACCAAACACCCCCTAAGATAA 59.646 41.667 0.00 0.00 0.00 1.75
4 5 3.917629 TGAACCAAACACCCCCTAAGATA 59.082 43.478 0.00 0.00 0.00 1.98
5 6 2.719705 TGAACCAAACACCCCCTAAGAT 59.280 45.455 0.00 0.00 0.00 2.40
6 7 2.107552 CTGAACCAAACACCCCCTAAGA 59.892 50.000 0.00 0.00 0.00 2.10
7 8 2.107552 TCTGAACCAAACACCCCCTAAG 59.892 50.000 0.00 0.00 0.00 2.18
8 9 2.136863 TCTGAACCAAACACCCCCTAA 58.863 47.619 0.00 0.00 0.00 2.69
9 10 1.822425 TCTGAACCAAACACCCCCTA 58.178 50.000 0.00 0.00 0.00 3.53
10 11 0.930726 TTCTGAACCAAACACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
11 12 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
12 13 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
13 14 2.932261 AGACTTCTGAACCAAACACCC 58.068 47.619 0.00 0.00 0.00 4.61
14 15 4.515567 CCTAAGACTTCTGAACCAAACACC 59.484 45.833 0.00 0.00 0.00 4.16
15 16 5.236695 GTCCTAAGACTTCTGAACCAAACAC 59.763 44.000 0.00 0.00 40.10 3.32
16 17 5.365619 GTCCTAAGACTTCTGAACCAAACA 58.634 41.667 0.00 0.00 40.10 2.83
17 18 5.926214 GTCCTAAGACTTCTGAACCAAAC 57.074 43.478 0.00 0.00 40.10 2.93
73 74 8.048514 GGGACTAGAAAAAGACTCTACTAGAGA 58.951 40.741 18.41 0.00 45.07 3.10
74 75 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
75 76 7.830201 CAGGGACTAGAAAAAGACTCTACTAGA 59.170 40.741 0.00 0.00 36.02 2.43
76 77 7.612633 ACAGGGACTAGAAAAAGACTCTACTAG 59.387 40.741 0.00 0.00 36.02 2.57
77 78 7.468496 ACAGGGACTAGAAAAAGACTCTACTA 58.532 38.462 0.00 0.00 36.02 1.82
78 79 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
79 80 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
80 81 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
81 82 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
82 83 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
83 84 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
84 85 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
88 89 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
89 90 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
90 91 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
91 92 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
92 93 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
93 94 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
94 95 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
95 96 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
96 97 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
97 98 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
98 99 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
99 100 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
100 101 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
101 102 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
102 103 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
103 104 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
104 105 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
105 106 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
106 107 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
107 108 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
108 109 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
110 111 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
111 112 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
112 113 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
113 114 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
114 115 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
115 116 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
116 117 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
117 118 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
118 119 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
119 120 5.138276 AGAAAAAGTCCCTAGGAACCAAAC 58.862 41.667 11.48 0.00 31.38 2.93
120 121 5.397553 AGAAAAAGTCCCTAGGAACCAAA 57.602 39.130 11.48 0.00 31.38 3.28
121 122 5.609708 ACTAGAAAAAGTCCCTAGGAACCAA 59.390 40.000 11.48 0.00 35.43 3.67
122 123 5.160386 ACTAGAAAAAGTCCCTAGGAACCA 58.840 41.667 11.48 0.00 35.43 3.67
123 124 5.484644 AGACTAGAAAAAGTCCCTAGGAACC 59.515 44.000 11.48 0.00 45.86 3.62
124 125 6.438108 AGAGACTAGAAAAAGTCCCTAGGAAC 59.562 42.308 11.48 0.00 45.86 3.62
125 126 6.437793 CAGAGACTAGAAAAAGTCCCTAGGAA 59.562 42.308 11.48 0.00 45.86 3.36
126 127 5.952947 CAGAGACTAGAAAAAGTCCCTAGGA 59.047 44.000 11.48 0.00 45.86 2.94
127 128 5.128008 CCAGAGACTAGAAAAAGTCCCTAGG 59.872 48.000 0.06 0.06 45.86 3.02
128 129 5.128008 CCCAGAGACTAGAAAAAGTCCCTAG 59.872 48.000 0.00 0.00 45.86 3.02
129 130 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
130 131 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
131 132 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
132 133 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
152 153 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
153 154 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
154 155 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
155 156 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
156 157 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
157 158 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
158 159 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
159 160 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
160 161 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
161 162 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
162 163 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
163 164 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
164 165 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
165 166 2.514803 CTTAGGGGGTGTTTGGTTCAG 58.485 52.381 0.00 0.00 0.00 3.02
166 167 1.479757 GCTTAGGGGGTGTTTGGTTCA 60.480 52.381 0.00 0.00 0.00 3.18
167 168 1.254026 GCTTAGGGGGTGTTTGGTTC 58.746 55.000 0.00 0.00 0.00 3.62
168 169 0.178944 GGCTTAGGGGGTGTTTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
169 170 1.071909 AGGCTTAGGGGGTGTTTGGT 61.072 55.000 0.00 0.00 0.00 3.67
170 171 0.323451 GAGGCTTAGGGGGTGTTTGG 60.323 60.000 0.00 0.00 0.00 3.28
171 172 0.698818 AGAGGCTTAGGGGGTGTTTG 59.301 55.000 0.00 0.00 0.00 2.93
172 173 0.992695 GAGAGGCTTAGGGGGTGTTT 59.007 55.000 0.00 0.00 0.00 2.83
173 174 0.178873 TGAGAGGCTTAGGGGGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
174 175 0.618968 CTGAGAGGCTTAGGGGGTGT 60.619 60.000 0.00 0.00 0.00 4.16
175 176 1.977293 GCTGAGAGGCTTAGGGGGTG 61.977 65.000 0.00 0.00 0.00 4.61
176 177 1.690985 GCTGAGAGGCTTAGGGGGT 60.691 63.158 0.00 0.00 0.00 4.95
177 178 1.059006 ATGCTGAGAGGCTTAGGGGG 61.059 60.000 0.00 0.00 0.00 5.40
178 179 0.396060 GATGCTGAGAGGCTTAGGGG 59.604 60.000 0.00 0.00 0.00 4.79
179 180 1.126488 TGATGCTGAGAGGCTTAGGG 58.874 55.000 0.00 0.00 0.00 3.53
180 181 1.483827 TGTGATGCTGAGAGGCTTAGG 59.516 52.381 0.00 0.00 0.00 2.69
181 182 2.975732 TGTGATGCTGAGAGGCTTAG 57.024 50.000 0.00 0.00 0.00 2.18
182 183 2.679059 GCTTGTGATGCTGAGAGGCTTA 60.679 50.000 0.00 0.00 0.00 3.09
183 184 1.949547 GCTTGTGATGCTGAGAGGCTT 60.950 52.381 0.00 0.00 0.00 4.35
184 185 0.392729 GCTTGTGATGCTGAGAGGCT 60.393 55.000 0.00 0.00 0.00 4.58
185 186 0.675837 TGCTTGTGATGCTGAGAGGC 60.676 55.000 0.00 0.00 0.00 4.70
186 187 1.671328 CATGCTTGTGATGCTGAGAGG 59.329 52.381 0.00 0.00 0.00 3.69
187 188 2.352034 GACATGCTTGTGATGCTGAGAG 59.648 50.000 10.37 0.00 35.79 3.20
188 189 2.353323 GACATGCTTGTGATGCTGAGA 58.647 47.619 10.37 0.00 35.79 3.27
189 190 1.400846 GGACATGCTTGTGATGCTGAG 59.599 52.381 10.37 0.00 35.79 3.35
190 191 1.456296 GGACATGCTTGTGATGCTGA 58.544 50.000 10.37 0.00 35.79 4.26
191 192 0.454600 GGGACATGCTTGTGATGCTG 59.545 55.000 10.37 0.00 35.79 4.41
192 193 0.330604 AGGGACATGCTTGTGATGCT 59.669 50.000 10.37 0.00 35.79 3.79
193 194 1.180029 AAGGGACATGCTTGTGATGC 58.820 50.000 10.37 0.00 35.79 3.91
194 195 3.947910 AAAAGGGACATGCTTGTGATG 57.052 42.857 10.37 0.00 35.79 3.07
195 196 7.147846 CCTTATAAAAAGGGACATGCTTGTGAT 60.148 37.037 10.37 0.00 35.79 3.06
196 197 6.152661 CCTTATAAAAAGGGACATGCTTGTGA 59.847 38.462 10.37 0.00 35.79 3.58
197 198 6.332630 CCTTATAAAAAGGGACATGCTTGTG 58.667 40.000 10.37 0.00 35.79 3.33
198 199 5.105351 GCCTTATAAAAAGGGACATGCTTGT 60.105 40.000 4.68 4.68 37.88 3.16
199 200 5.351458 GCCTTATAAAAAGGGACATGCTTG 58.649 41.667 5.96 0.00 37.88 4.01
200 201 4.405680 GGCCTTATAAAAAGGGACATGCTT 59.594 41.667 0.00 0.00 37.88 3.91
201 202 3.960755 GGCCTTATAAAAAGGGACATGCT 59.039 43.478 0.00 0.00 37.88 3.79
202 203 3.069586 GGGCCTTATAAAAAGGGACATGC 59.930 47.826 0.84 0.00 37.88 4.06
203 204 3.641436 GGGGCCTTATAAAAAGGGACATG 59.359 47.826 0.84 0.00 37.88 3.21
204 205 3.690148 CGGGGCCTTATAAAAAGGGACAT 60.690 47.826 0.84 0.00 37.88 3.06
205 206 2.357361 CGGGGCCTTATAAAAAGGGACA 60.357 50.000 0.84 0.00 37.88 4.02
206 207 2.304092 CGGGGCCTTATAAAAAGGGAC 58.696 52.381 0.84 0.00 37.88 4.46
207 208 1.410507 GCGGGGCCTTATAAAAAGGGA 60.411 52.381 0.84 0.00 37.88 4.20
208 209 1.037493 GCGGGGCCTTATAAAAAGGG 58.963 55.000 0.84 0.00 37.88 3.95
209 210 2.067365 AGCGGGGCCTTATAAAAAGG 57.933 50.000 0.84 0.00 40.39 3.11
210 211 3.445805 TCAAAGCGGGGCCTTATAAAAAG 59.554 43.478 0.84 0.00 0.00 2.27
211 212 3.432378 TCAAAGCGGGGCCTTATAAAAA 58.568 40.909 0.84 0.00 0.00 1.94
212 213 3.088789 TCAAAGCGGGGCCTTATAAAA 57.911 42.857 0.84 0.00 0.00 1.52
213 214 2.810870 TCAAAGCGGGGCCTTATAAA 57.189 45.000 0.84 0.00 0.00 1.40
214 215 2.810870 TTCAAAGCGGGGCCTTATAA 57.189 45.000 0.84 0.00 0.00 0.98
215 216 2.810870 TTTCAAAGCGGGGCCTTATA 57.189 45.000 0.84 0.00 0.00 0.98
216 217 1.824852 CTTTTCAAAGCGGGGCCTTAT 59.175 47.619 0.84 0.00 0.00 1.73
217 218 1.253100 CTTTTCAAAGCGGGGCCTTA 58.747 50.000 0.84 0.00 0.00 2.69
218 219 1.471829 CCTTTTCAAAGCGGGGCCTT 61.472 55.000 0.84 0.00 34.69 4.35
219 220 1.908299 CCTTTTCAAAGCGGGGCCT 60.908 57.895 0.84 0.00 34.69 5.19
220 221 2.207229 ACCTTTTCAAAGCGGGGCC 61.207 57.895 0.00 0.00 34.69 5.80
221 222 1.006220 CACCTTTTCAAAGCGGGGC 60.006 57.895 0.00 0.00 34.69 5.80
222 223 1.006220 GCACCTTTTCAAAGCGGGG 60.006 57.895 0.00 0.00 34.69 5.73
223 224 0.318120 ATGCACCTTTTCAAAGCGGG 59.682 50.000 0.00 0.00 34.69 6.13
224 225 1.421382 CATGCACCTTTTCAAAGCGG 58.579 50.000 0.00 0.00 34.69 5.52
225 226 0.785979 GCATGCACCTTTTCAAAGCG 59.214 50.000 14.21 0.00 34.69 4.68
226 227 1.868469 TGCATGCACCTTTTCAAAGC 58.132 45.000 18.46 0.00 34.69 3.51
239 240 6.495892 CCAATGAAATGGTTGCATGCATGC 62.496 45.833 38.71 38.71 43.53 4.06
240 241 3.064682 CCAATGAAATGGTTGCATGCATG 59.935 43.478 23.37 22.70 35.65 4.06
241 242 3.275143 CCAATGAAATGGTTGCATGCAT 58.725 40.909 23.37 4.78 35.65 3.96
242 243 2.701107 CCAATGAAATGGTTGCATGCA 58.299 42.857 18.46 18.46 35.65 3.96
251 252 5.618195 GCTTTCAATGCAACCAATGAAATGG 60.618 40.000 12.32 0.00 45.06 3.16
252 253 5.387279 GCTTTCAATGCAACCAATGAAATG 58.613 37.500 12.32 9.34 45.06 2.32
253 254 4.456566 GGCTTTCAATGCAACCAATGAAAT 59.543 37.500 12.32 0.00 45.06 2.17
254 255 3.814283 GGCTTTCAATGCAACCAATGAAA 59.186 39.130 0.00 2.84 44.40 2.69
255 256 3.181457 TGGCTTTCAATGCAACCAATGAA 60.181 39.130 0.00 0.00 38.68 2.57
256 257 2.367894 TGGCTTTCAATGCAACCAATGA 59.632 40.909 0.00 0.00 0.00 2.57
257 258 2.768698 TGGCTTTCAATGCAACCAATG 58.231 42.857 0.00 0.00 0.00 2.82
258 259 3.706600 ATGGCTTTCAATGCAACCAAT 57.293 38.095 0.00 0.00 0.00 3.16
259 260 3.139850 CAATGGCTTTCAATGCAACCAA 58.860 40.909 0.00 0.00 0.00 3.67
260 261 2.104451 ACAATGGCTTTCAATGCAACCA 59.896 40.909 0.00 0.00 29.54 3.67
261 262 2.769893 ACAATGGCTTTCAATGCAACC 58.230 42.857 0.00 0.00 29.54 3.77
262 263 3.560896 ACAACAATGGCTTTCAATGCAAC 59.439 39.130 0.00 0.00 29.54 4.17
263 264 3.806380 ACAACAATGGCTTTCAATGCAA 58.194 36.364 0.00 0.00 29.54 4.08
264 265 3.472283 ACAACAATGGCTTTCAATGCA 57.528 38.095 0.00 0.00 29.54 3.96
265 266 3.058777 CCAACAACAATGGCTTTCAATGC 60.059 43.478 0.00 0.00 29.54 3.56
266 267 4.024725 CACCAACAACAATGGCTTTCAATG 60.025 41.667 0.00 0.00 41.89 2.82
267 268 4.128643 CACCAACAACAATGGCTTTCAAT 58.871 39.130 0.00 0.00 41.89 2.57
268 269 3.529533 CACCAACAACAATGGCTTTCAA 58.470 40.909 0.00 0.00 41.89 2.69
269 270 2.741228 GCACCAACAACAATGGCTTTCA 60.741 45.455 0.00 0.00 41.89 2.69
270 271 1.866601 GCACCAACAACAATGGCTTTC 59.133 47.619 0.00 0.00 41.89 2.62
271 272 1.474855 GGCACCAACAACAATGGCTTT 60.475 47.619 0.00 0.00 41.89 3.51
272 273 0.106521 GGCACCAACAACAATGGCTT 59.893 50.000 0.00 0.00 41.89 4.35
273 274 1.047596 TGGCACCAACAACAATGGCT 61.048 50.000 0.00 0.00 41.89 4.75
274 275 0.035176 ATGGCACCAACAACAATGGC 59.965 50.000 0.00 0.00 41.89 4.40
275 276 1.608542 CCATGGCACCAACAACAATGG 60.609 52.381 0.00 0.00 43.84 3.16
276 277 1.798283 CCATGGCACCAACAACAATG 58.202 50.000 0.00 0.00 0.00 2.82
277 278 0.035176 GCCATGGCACCAACAACAAT 59.965 50.000 32.08 0.00 41.49 2.71
278 279 1.445095 GCCATGGCACCAACAACAA 59.555 52.632 32.08 0.00 41.49 2.83
279 280 2.506061 GGCCATGGCACCAACAACA 61.506 57.895 36.56 0.00 44.11 3.33
280 281 2.343387 GGCCATGGCACCAACAAC 59.657 61.111 36.56 14.15 44.11 3.32
281 282 3.301554 CGGCCATGGCACCAACAA 61.302 61.111 36.56 0.00 44.11 2.83
284 285 3.817210 TTTCCGGCCATGGCACCAA 62.817 57.895 36.56 22.00 44.11 3.67
285 286 3.817210 TTTTCCGGCCATGGCACCA 62.817 57.895 36.56 17.34 44.11 4.17
286 287 1.898330 AATTTTCCGGCCATGGCACC 61.898 55.000 36.56 20.17 44.11 5.01
287 288 0.820871 TAATTTTCCGGCCATGGCAC 59.179 50.000 36.56 24.28 44.11 5.01
288 289 1.561643 TTAATTTTCCGGCCATGGCA 58.438 45.000 36.56 16.94 44.11 4.92
289 290 2.908688 ATTAATTTTCCGGCCATGGC 57.091 45.000 29.47 29.47 41.06 4.40
290 291 4.340950 AGTGTATTAATTTTCCGGCCATGG 59.659 41.667 7.63 7.63 0.00 3.66
291 292 5.514274 AGTGTATTAATTTTCCGGCCATG 57.486 39.130 2.24 0.00 0.00 3.66
292 293 5.654650 TGAAGTGTATTAATTTTCCGGCCAT 59.345 36.000 2.24 0.00 0.00 4.40
293 294 5.010933 TGAAGTGTATTAATTTTCCGGCCA 58.989 37.500 2.24 0.00 0.00 5.36
294 295 5.570234 TGAAGTGTATTAATTTTCCGGCC 57.430 39.130 0.00 0.00 0.00 6.13
295 296 5.458779 GCATGAAGTGTATTAATTTTCCGGC 59.541 40.000 0.00 0.00 0.00 6.13
296 297 5.681105 CGCATGAAGTGTATTAATTTTCCGG 59.319 40.000 0.00 0.00 0.00 5.14
297 298 6.194508 CACGCATGAAGTGTATTAATTTTCCG 59.805 38.462 12.00 0.00 39.40 4.30
298 299 6.020678 GCACGCATGAAGTGTATTAATTTTCC 60.021 38.462 18.63 0.09 39.40 3.13
299 300 6.747280 AGCACGCATGAAGTGTATTAATTTTC 59.253 34.615 18.63 0.00 39.40 2.29
300 301 6.620678 AGCACGCATGAAGTGTATTAATTTT 58.379 32.000 18.63 0.00 39.40 1.82
301 302 6.194796 AGCACGCATGAAGTGTATTAATTT 57.805 33.333 18.63 0.00 39.40 1.82
302 303 5.818136 AGCACGCATGAAGTGTATTAATT 57.182 34.783 18.63 0.00 39.40 1.40
303 304 5.818136 AAGCACGCATGAAGTGTATTAAT 57.182 34.783 18.63 0.00 39.40 1.40
304 305 5.621197 AAAGCACGCATGAAGTGTATTAA 57.379 34.783 18.63 0.00 39.40 1.40
305 306 5.621197 AAAAGCACGCATGAAGTGTATTA 57.379 34.783 18.63 0.00 39.40 0.98
306 307 4.503741 AAAAGCACGCATGAAGTGTATT 57.496 36.364 18.63 12.87 39.40 1.89
307 308 4.023279 TGAAAAAGCACGCATGAAGTGTAT 60.023 37.500 18.63 8.80 39.40 2.29
308 309 3.313803 TGAAAAAGCACGCATGAAGTGTA 59.686 39.130 18.63 1.00 39.40 2.90
309 310 2.098934 TGAAAAAGCACGCATGAAGTGT 59.901 40.909 18.63 7.11 42.97 3.55
310 311 2.730069 TGAAAAAGCACGCATGAAGTG 58.270 42.857 14.88 14.88 42.15 3.16
311 312 3.648339 ATGAAAAAGCACGCATGAAGT 57.352 38.095 0.00 0.00 0.00 3.01
312 313 3.122278 CCAATGAAAAAGCACGCATGAAG 59.878 43.478 0.00 0.00 0.00 3.02
313 314 3.058450 CCAATGAAAAAGCACGCATGAA 58.942 40.909 0.00 0.00 0.00 2.57
314 315 2.674954 CCAATGAAAAAGCACGCATGA 58.325 42.857 0.00 0.00 0.00 3.07
315 316 1.127213 GCCAATGAAAAAGCACGCATG 59.873 47.619 0.00 0.00 0.00 4.06
316 317 1.001181 AGCCAATGAAAAAGCACGCAT 59.999 42.857 0.00 0.00 0.00 4.73
317 318 0.388659 AGCCAATGAAAAAGCACGCA 59.611 45.000 0.00 0.00 0.00 5.24
318 319 0.785979 CAGCCAATGAAAAAGCACGC 59.214 50.000 0.00 0.00 0.00 5.34
319 320 0.785979 GCAGCCAATGAAAAAGCACG 59.214 50.000 0.00 0.00 0.00 5.34
320 321 1.868469 TGCAGCCAATGAAAAAGCAC 58.132 45.000 0.00 0.00 0.00 4.40
321 322 2.418692 CATGCAGCCAATGAAAAAGCA 58.581 42.857 0.00 0.00 34.78 3.91
322 323 1.129811 GCATGCAGCCAATGAAAAAGC 59.870 47.619 14.21 0.00 37.23 3.51
334 335 1.268899 ACTCTTTCACAAGCATGCAGC 59.731 47.619 21.98 0.00 46.19 5.25
335 336 2.921069 GCACTCTTTCACAAGCATGCAG 60.921 50.000 21.98 14.52 39.04 4.41
336 337 1.001048 GCACTCTTTCACAAGCATGCA 60.001 47.619 21.98 0.00 39.04 3.96
337 338 1.001048 TGCACTCTTTCACAAGCATGC 60.001 47.619 10.51 10.51 39.39 4.06
338 339 3.570926 ATGCACTCTTTCACAAGCATG 57.429 42.857 0.00 0.00 40.77 4.06
339 340 3.570975 TCAATGCACTCTTTCACAAGCAT 59.429 39.130 0.00 0.00 43.79 3.79
340 341 2.950975 TCAATGCACTCTTTCACAAGCA 59.049 40.909 0.00 0.00 36.34 3.91
341 342 3.631145 TCAATGCACTCTTTCACAAGC 57.369 42.857 0.00 0.00 0.00 4.01
342 343 5.457799 CACTTTCAATGCACTCTTTCACAAG 59.542 40.000 0.00 0.00 0.00 3.16
343 344 5.125257 TCACTTTCAATGCACTCTTTCACAA 59.875 36.000 0.00 0.00 0.00 3.33
344 345 4.639755 TCACTTTCAATGCACTCTTTCACA 59.360 37.500 0.00 0.00 0.00 3.58
345 346 5.173774 TCACTTTCAATGCACTCTTTCAC 57.826 39.130 0.00 0.00 0.00 3.18
346 347 5.833406 TTCACTTTCAATGCACTCTTTCA 57.167 34.783 0.00 0.00 0.00 2.69
347 348 6.919662 TCATTTCACTTTCAATGCACTCTTTC 59.080 34.615 0.00 0.00 31.47 2.62
348 349 6.808829 TCATTTCACTTTCAATGCACTCTTT 58.191 32.000 0.00 0.00 31.47 2.52
349 350 6.395426 TCATTTCACTTTCAATGCACTCTT 57.605 33.333 0.00 0.00 31.47 2.85
350 351 6.395426 TTCATTTCACTTTCAATGCACTCT 57.605 33.333 0.00 0.00 31.47 3.24
351 352 6.919662 TCTTTCATTTCACTTTCAATGCACTC 59.080 34.615 0.00 0.00 31.47 3.51
352 353 6.808829 TCTTTCATTTCACTTTCAATGCACT 58.191 32.000 0.00 0.00 31.47 4.40
353 354 7.467557 TTCTTTCATTTCACTTTCAATGCAC 57.532 32.000 0.00 0.00 31.47 4.57
354 355 8.665643 AATTCTTTCATTTCACTTTCAATGCA 57.334 26.923 0.00 0.00 31.47 3.96
362 363 9.415544 GCTCACATTAATTCTTTCATTTCACTT 57.584 29.630 0.00 0.00 0.00 3.16
363 364 8.579006 TGCTCACATTAATTCTTTCATTTCACT 58.421 29.630 0.00 0.00 0.00 3.41
364 365 8.746922 TGCTCACATTAATTCTTTCATTTCAC 57.253 30.769 0.00 0.00 0.00 3.18
365 366 9.761504 TTTGCTCACATTAATTCTTTCATTTCA 57.238 25.926 0.00 0.00 0.00 2.69
380 381 9.577110 CAAGACACATAATAATTTGCTCACATT 57.423 29.630 0.00 0.00 0.00 2.71
381 382 8.959548 TCAAGACACATAATAATTTGCTCACAT 58.040 29.630 0.00 0.00 0.00 3.21
382 383 8.334263 TCAAGACACATAATAATTTGCTCACA 57.666 30.769 0.00 0.00 0.00 3.58
383 384 9.443283 GATCAAGACACATAATAATTTGCTCAC 57.557 33.333 0.00 0.00 0.00 3.51
384 385 9.399797 AGATCAAGACACATAATAATTTGCTCA 57.600 29.630 0.00 0.00 0.00 4.26
385 386 9.875675 GAGATCAAGACACATAATAATTTGCTC 57.124 33.333 0.00 0.00 0.00 4.26
386 387 9.399797 TGAGATCAAGACACATAATAATTTGCT 57.600 29.630 0.00 0.00 0.00 3.91
387 388 9.661187 CTGAGATCAAGACACATAATAATTTGC 57.339 33.333 0.00 0.00 0.00 3.68
395 396 9.591792 CAACTTATCTGAGATCAAGACACATAA 57.408 33.333 0.00 0.00 0.00 1.90
396 397 8.753133 ACAACTTATCTGAGATCAAGACACATA 58.247 33.333 0.00 0.00 0.00 2.29
397 398 7.619050 ACAACTTATCTGAGATCAAGACACAT 58.381 34.615 0.00 0.00 0.00 3.21
398 399 6.997655 ACAACTTATCTGAGATCAAGACACA 58.002 36.000 0.00 0.00 0.00 3.72
399 400 7.319646 AGACAACTTATCTGAGATCAAGACAC 58.680 38.462 0.00 0.00 0.00 3.67
400 401 7.473735 AGACAACTTATCTGAGATCAAGACA 57.526 36.000 0.00 0.00 0.00 3.41
401 402 8.770438 AAAGACAACTTATCTGAGATCAAGAC 57.230 34.615 0.00 0.00 35.05 3.01
403 404 9.311916 CCTAAAGACAACTTATCTGAGATCAAG 57.688 37.037 0.00 4.41 35.05 3.02
404 405 7.766278 GCCTAAAGACAACTTATCTGAGATCAA 59.234 37.037 0.00 0.00 35.05 2.57
405 406 7.268586 GCCTAAAGACAACTTATCTGAGATCA 58.731 38.462 0.00 0.00 35.05 2.92
406 407 6.704050 GGCCTAAAGACAACTTATCTGAGATC 59.296 42.308 0.00 0.00 35.05 2.75
407 408 6.385467 AGGCCTAAAGACAACTTATCTGAGAT 59.615 38.462 1.29 0.00 35.05 2.75
408 409 5.721960 AGGCCTAAAGACAACTTATCTGAGA 59.278 40.000 1.29 0.00 35.05 3.27
409 410 5.983540 AGGCCTAAAGACAACTTATCTGAG 58.016 41.667 1.29 0.00 35.05 3.35
410 411 7.490657 TTAGGCCTAAAGACAACTTATCTGA 57.509 36.000 23.21 0.00 35.05 3.27
411 412 9.832445 TTATTAGGCCTAAAGACAACTTATCTG 57.168 33.333 28.50 0.00 35.05 2.90
414 415 9.404848 GGTTTATTAGGCCTAAAGACAACTTAT 57.595 33.333 28.50 10.86 35.05 1.73
415 416 7.830697 GGGTTTATTAGGCCTAAAGACAACTTA 59.169 37.037 28.50 11.28 35.05 2.24
416 417 6.662234 GGGTTTATTAGGCCTAAAGACAACTT 59.338 38.462 28.50 12.30 38.05 2.66
417 418 6.185511 GGGTTTATTAGGCCTAAAGACAACT 58.814 40.000 28.50 13.03 0.00 3.16
418 419 5.065602 CGGGTTTATTAGGCCTAAAGACAAC 59.934 44.000 28.50 23.66 0.00 3.32
419 420 5.187687 CGGGTTTATTAGGCCTAAAGACAA 58.812 41.667 28.50 16.49 0.00 3.18
420 421 4.384427 CCGGGTTTATTAGGCCTAAAGACA 60.384 45.833 28.50 10.52 0.00 3.41
421 422 4.132336 CCGGGTTTATTAGGCCTAAAGAC 58.868 47.826 28.50 23.35 0.00 3.01
422 423 3.136992 CCCGGGTTTATTAGGCCTAAAGA 59.863 47.826 28.50 16.79 0.00 2.52
423 424 3.483421 CCCGGGTTTATTAGGCCTAAAG 58.517 50.000 28.50 13.19 0.00 1.85
424 425 2.423231 GCCCGGGTTTATTAGGCCTAAA 60.423 50.000 28.50 12.25 37.66 1.85
425 426 1.143481 GCCCGGGTTTATTAGGCCTAA 59.857 52.381 27.11 27.11 37.66 2.69
426 427 0.766752 GCCCGGGTTTATTAGGCCTA 59.233 55.000 24.63 8.91 37.66 3.93
427 428 1.535190 GCCCGGGTTTATTAGGCCT 59.465 57.895 24.63 11.78 37.66 5.19
428 429 1.895231 CGCCCGGGTTTATTAGGCC 60.895 63.158 24.63 0.00 40.65 5.19
429 430 1.895231 CCGCCCGGGTTTATTAGGC 60.895 63.158 24.63 2.44 40.33 3.93
430 431 0.250166 CTCCGCCCGGGTTTATTAGG 60.250 60.000 24.63 13.87 37.00 2.69
431 432 0.250166 CCTCCGCCCGGGTTTATTAG 60.250 60.000 24.63 11.04 37.00 1.73
432 433 1.698067 CCCTCCGCCCGGGTTTATTA 61.698 60.000 24.63 0.92 36.91 0.98
433 434 2.593420 CCTCCGCCCGGGTTTATT 59.407 61.111 24.63 0.00 37.00 1.40
434 435 3.485745 CCCTCCGCCCGGGTTTAT 61.486 66.667 24.63 0.00 36.91 1.40
435 436 4.718827 TCCCTCCGCCCGGGTTTA 62.719 66.667 24.63 6.48 42.56 2.01
440 441 4.835891 ACTACTCCCTCCGCCCGG 62.836 72.222 0.00 0.00 0.00 5.73
441 442 2.758737 AACTACTCCCTCCGCCCG 60.759 66.667 0.00 0.00 0.00 6.13
442 443 1.988406 ACAACTACTCCCTCCGCCC 60.988 63.158 0.00 0.00 0.00 6.13
443 444 1.218316 CACAACTACTCCCTCCGCC 59.782 63.158 0.00 0.00 0.00 6.13
444 445 0.173708 CTCACAACTACTCCCTCCGC 59.826 60.000 0.00 0.00 0.00 5.54
445 446 1.546961 ACTCACAACTACTCCCTCCG 58.453 55.000 0.00 0.00 0.00 4.63
446 447 2.028020 CCAACTCACAACTACTCCCTCC 60.028 54.545 0.00 0.00 0.00 4.30
447 448 2.028020 CCCAACTCACAACTACTCCCTC 60.028 54.545 0.00 0.00 0.00 4.30
448 449 1.978580 CCCAACTCACAACTACTCCCT 59.021 52.381 0.00 0.00 0.00 4.20
449 450 1.975680 TCCCAACTCACAACTACTCCC 59.024 52.381 0.00 0.00 0.00 4.30
450 451 3.557264 CCTTCCCAACTCACAACTACTCC 60.557 52.174 0.00 0.00 0.00 3.85
451 452 3.323979 TCCTTCCCAACTCACAACTACTC 59.676 47.826 0.00 0.00 0.00 2.59
452 453 3.314693 TCCTTCCCAACTCACAACTACT 58.685 45.455 0.00 0.00 0.00 2.57
453 454 3.764237 TCCTTCCCAACTCACAACTAC 57.236 47.619 0.00 0.00 0.00 2.73
520 521 2.808543 CAGAGCTTTCTTTGTTAGGCGT 59.191 45.455 0.00 0.00 0.00 5.68
544 545 5.719563 TGAAACACCTACTACATGGAGATGA 59.280 40.000 13.29 0.00 33.36 2.92
582 583 1.136305 TGTTGCGATCCAGCCTAGTAC 59.864 52.381 0.00 0.00 36.02 2.73
583 584 1.480789 TGTTGCGATCCAGCCTAGTA 58.519 50.000 0.00 0.00 36.02 1.82
584 585 0.833287 ATGTTGCGATCCAGCCTAGT 59.167 50.000 0.00 0.00 36.02 2.57
643 644 2.434884 CGCCACCTGGTGCTACTG 60.435 66.667 21.47 8.41 39.04 2.74
713 714 1.670083 GTGTCGGTTTTCCCTCCGG 60.670 63.158 0.00 0.00 45.79 5.14
744 746 1.117150 TCCCCTTCGCATACACTACC 58.883 55.000 0.00 0.00 0.00 3.18
745 747 2.973694 TTCCCCTTCGCATACACTAC 57.026 50.000 0.00 0.00 0.00 2.73
746 748 3.985019 TTTTCCCCTTCGCATACACTA 57.015 42.857 0.00 0.00 0.00 2.74
747 749 2.871096 TTTTCCCCTTCGCATACACT 57.129 45.000 0.00 0.00 0.00 3.55
748 750 3.078837 TCTTTTTCCCCTTCGCATACAC 58.921 45.455 0.00 0.00 0.00 2.90
749 751 3.426787 TCTTTTTCCCCTTCGCATACA 57.573 42.857 0.00 0.00 0.00 2.29
762 764 5.924254 CCCATTTTTCCGGTACTTCTTTTTC 59.076 40.000 0.00 0.00 0.00 2.29
879 883 3.696548 GGAAGTGGAGATGGATGGTTTTC 59.303 47.826 0.00 0.00 0.00 2.29
917 921 3.549794 GATTTGGATCTGGGGAAGTGAG 58.450 50.000 0.00 0.00 0.00 3.51
918 922 2.092968 CGATTTGGATCTGGGGAAGTGA 60.093 50.000 0.00 0.00 0.00 3.41
919 923 2.292267 CGATTTGGATCTGGGGAAGTG 58.708 52.381 0.00 0.00 0.00 3.16
1479 1486 0.591659 CAGACGTGAGGAAGACGACA 59.408 55.000 0.00 0.00 39.21 4.35
1622 1629 4.410400 GGAGGTTGAGGGTGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
1829 1841 5.441718 ACTCCAATGCATCCTCTTCTAAA 57.558 39.130 0.00 0.00 0.00 1.85
1862 1874 9.614792 GTTCCTTTTTATGTGTATATCCTCTGT 57.385 33.333 0.00 0.00 0.00 3.41
1865 1877 9.628500 AAGGTTCCTTTTTATGTGTATATCCTC 57.372 33.333 0.00 0.00 0.00 3.71
1979 1991 7.124298 TGTTCTGTATGCTAGTAACAAGGAGAT 59.876 37.037 0.00 0.00 0.00 2.75
2082 2095 5.241662 TCATACGTGAAACCACATTGATCA 58.758 37.500 0.00 0.00 34.30 2.92
2100 2113 3.496130 CCACGCCAGAATCAAGATCATAC 59.504 47.826 0.00 0.00 0.00 2.39
2285 2324 5.620654 CGACTTCTGTCATTGCAATTGGATT 60.621 40.000 9.83 0.00 43.06 3.01
2289 2328 4.408993 TCGACTTCTGTCATTGCAATTG 57.591 40.909 9.83 0.00 43.06 2.32
2309 2348 2.053627 CTTGTTTCACCGCTTTGCATC 58.946 47.619 0.00 0.00 0.00 3.91
2316 2355 0.180406 ACAGGACTTGTTTCACCGCT 59.820 50.000 0.00 0.00 36.31 5.52
2318 2357 1.867233 CTCACAGGACTTGTTTCACCG 59.133 52.381 0.00 0.00 38.16 4.94
2343 2382 5.429130 GGGACGTAAAAGGAGATCTCAAAT 58.571 41.667 23.85 9.48 0.00 2.32
2462 2504 0.866061 CGACCAGCGACGGTGATAAG 60.866 60.000 27.42 13.33 44.57 1.73
2481 2523 0.246757 CGTGAACATTCGTGCTACGC 60.247 55.000 4.15 0.00 42.21 4.42
2485 2527 1.139989 CTGACGTGAACATTCGTGCT 58.860 50.000 0.00 0.00 40.39 4.40
2494 2536 2.735134 GACATGGTAACCTGACGTGAAC 59.265 50.000 0.00 0.00 35.94 3.18
2508 2550 2.669569 GCTGCACCGTGACATGGT 60.670 61.111 13.90 13.90 38.21 3.55
2528 2570 0.594110 GCCCATGTTTTTCCGAACGA 59.406 50.000 0.00 0.00 32.18 3.85
2535 2577 1.686052 TCACTGGTGCCCATGTTTTTC 59.314 47.619 0.00 0.00 30.82 2.29
2538 2580 1.039856 GTTCACTGGTGCCCATGTTT 58.960 50.000 0.00 0.00 30.82 2.83
2567 2613 3.589735 TGAGAGGAAGGAGAGAGTAGTGT 59.410 47.826 0.00 0.00 0.00 3.55
2631 2802 4.021925 AGGGGAGCAGCCGTTGTC 62.022 66.667 0.00 0.00 37.63 3.18
2632 2803 4.335647 CAGGGGAGCAGCCGTTGT 62.336 66.667 0.00 0.00 37.63 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.