>input_sequence_71836
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-------------------------------------------ATGGCCTCGGCAGCGCCGCCCCTCCTCCCCACCACCG
TCCCGGCCGCCGCGCCCGCCACCGTCCTCCCCGCCGCCCCGGAC---GCCGCCGCCACCTCCATCGCCTCCCCGGACCCG
GCCGCCACGCGCGCCTTCCTGGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGCT
CCTGGACCGCGCCGCGCTCTCGCGCCCGGACTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTCC
GCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCCGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCTC
GCGCTCCTCGCTGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCTT
CTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTTGTCGTCTTCCTCACGTCTGTCGGTGGGATCATCT
TCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGGGCCTTCCGCGTCCCCGAGGACCTCTTCCTCGACGAG
GTACCCGACCAGGGCATCGTAGGAAACGCCGCCACCCTCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAGG
ACGCGTCTGA----------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G132000
GGTTTATCTTAGGGGGTGTTTGGTTCAGAAGTCTTAGGACTTTTTCTAGTCCCAGGGACTAATCAAAAAAGACTCTCTAG
TAGAGTCTTTTTCTAGTCCCTGTAGAAAAAGTCCCTCCCGTTTGGTTCCTAGGGACTTTTTCTAGTCTCTGGGACTAAAA
AGTCCCTGAACCAAACACCCCCTAAGCCTCTCAGCATCACAAGCATGTCCCTTTTTATAAGGCCCCGCTTTGAAAAGGTG
CATGCATGCAACCATTTCATTGGTTGCATTGAAAGCCATTGTTGTTGGTGCCATGGCCGGAAAATTAATACACTTCATGC
GTGCTTTTTCATTGGCTGCATGCTTGTGAAAGAGTGCATTGAAAGTGAAATGAAAGAATTAATGTGAGCAAATTATTATG
TGTCTTGATCTCAGATAAGTTGTCTTTAGGCCTAATAAACCCGGGCGGAGGGAGTAGTTGTGAGTTGGGAAGGAAGAAGG
ATGGGTGCATCACAGCCAACGATGGTGTGCCATGTTTTCCACGCCTAACAAAGAAAGCTCTGCTTCATCTCCATGTAGTA
GGTGTTTCATTTCCTCCTTGTAGTACTAGGCTGGATCGCAACATTGCATCTTCATCTACAACACTCCTACCTAACTTTGT
CTGCAGTAGCACCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACGGTTTTTTTTCCGGAGG
GAAAACCGACACGGTTT-CTTCACTGGTAGTGTATGCGAAGGGG-AAAAAGAAGTACCGG-AAAAATGGGTGCAGCCGTC
CCAAACCGTTGACCCGTCGCATCCCCCGGGGTGGGGTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCAA
TAGAAAACCATCCATCTCCACTTCCATTCGCATCCTCCTCCTCACTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAAG
GGAGGAAGAAAGAGATCTCGCCGAGCGCCACCCCGAATCCGCCATGGCCTCGGCAGCGCCGCCCCTCCTCCCCACCACCG
TCCCGGCCGCCGCGCCCGCCACCGTCCTCCCCGCCGCCCCGGAC---GCCGCCGCCACCTCCATCGCCTCCCCGGACCCG
GCCGCCACGCGCGCCTTCCTGGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGCT
CCTGGACCGCGCCGCGCTCTCGCGCCCGGACTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTCC
GCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCCGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCTC
GCGCTCCTCGCTGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCTT
CTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTTGTCGTCTTCCTCACGTCTGTCGGTGGGATCATCT
TCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGGGCCTTCCGCGTCCCCGAGGACCTCTTCCTCGACGAG
GTACCCGACCAGGGCATCGTAGGAAACGCCGCCACCCTCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAGG
ACGCGTCTGAGCCAGCCTCCTGTCCTCAGCTCTCTGATCTGCTACTCGGAAGAGACAAGTAAAGTC--TGGCTGGTTGAT
TCGTTTTTTCAGAAACGAAATACTTCTACTTGT---TTAAGATCATACTACGCGTTGCCTTTAGGAGCGTGAGGAGGAGA
TTTAGAAGAGGATGCATTGGAGTTATACTACAAACAGAGGATATACACATAAAAAGGAACCTTGGGATCTAGTTTTGTTT
CATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATATGTATCTCCTTGT
TACTAGCATACAGAACAAAATAAATTGCTGCTCCTCGTCTTAGCATG-AAATGAAATATATGATGGTTAATTACACCATT
TCTTTTCAAGAGATTGATCAATGTGGTTTCACGTATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGGTGATTCAT
TTTCTATCATAGTAGAGTTCTTCTTT-CTATGCTAATGTATCTT--ATCCTT----------------ATTGGAGTGCCC
TGTTTATTCTTTGATATTG-AGCTGGATATCATTTCTAAGACTGGTATCGATCTTATT-----AAAT-TATAATGTTATC
ATCAATCCAATTGCAATGACAGAAGTCGATGCAAAGCGGTGAAACAAGTCCTGTGAGCCTGATTTGAGATCTCCTTTTA-
CGTCCCCAAAAGAATCGATAAATAACAGAAATGAT--TTTTTTTGAGAATTAACGGAAATGATATTTAGCGGACGTAAAA
AAATCTGGCTGCTCGCAGCGAACCTTATCACCGTCGCTGGTCGCGTAGCACGAATGTTCACGTCAGGTTACCATGTCACG
GTGCAGCAATCGTTCGGAAAAACATGGGCACCAGT----GAACCCTGTACCGACACTACTCTCTCCTTCCTCTCACT---
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------------------------------------------GCCCCCCACCCCCCTCCCCCCCCCTTCACCCGCCCCCG
CGACAAC-------------------------------------------------------------------------
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-----------------------------------------------------------GGCTGCTCCCCTGCTTCCACA
ATGCAACATTGGCGGAGGTACGTTGC
>chr4A_455
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------------------------------------------------------TAGTTGTGAGTTGGGAAGGAAGAAGG
ATGGGTGCATCACAGCAAACGATGGTGTGCCATGTTTTCCTCGCCTAACAAAGAAAGCTCTGCTCCATCTCCATGTAGTA
GGTGTTTCATTTCCTCCTTGTA---CAAGGCTGGATCTCAACATTGCATCTTCATCTACAACACTCCTACCAAACTTTGT
CTGGAGTAGCGCCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACG---TTTTTTTCGGAGG
GAAAACCGACACGGTTTTCTTCACCA-----GTATGCGAAGGGAAAAAGAAGTGGTGGAAAAAAAAAGGGTGCAGCCGTC
CGAAACCGTTGACCCGTCGCATCCCCCGGGGTGGGCTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCAA
TACAAAACAACCCATTTCCACTTCCATTCGCATCCTCCTC---GCTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAAG
GGAGGAAGAAAGAGATCTCGCCCAGCGCCACCCCGAATCCGCCATGGCCTCGGCCGCGCCGCCCCTCCTCCCCACCACCG
TCCCGGCCGCCGCGCCCGCGACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCCGCCAACTCCATCGCCTCCCCGGACCCG
GCCGCCACGCGCGCCTTCCTCGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGCT
CCTGGACCGCGCCGCGCTCTCGCGCCCGGATTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTCC
GCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCGGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCTC
GCGCTCCTCGCCGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCTT
CTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTCGTCGTCTTCCTCACGTCTGTCGGTGGGATCATCT
TCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGTGCCTTCCGCGTGCCTGAGGATCTGTTCCTCGACGAG
GTGCCCGACCAGGGCCTCGTAGGAAACGGCGCCACCATCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAGG
ACGCGTCTGAGCCAGCCTCCTGTCCTCAGCTCTCTGATCTGCTACTCGGAACAGACAAGTAAAGTCAGTGGCTGGTTGAT
TCGTTTTTCCAGAAACGAAGTACTTCTACTTGTTTATTAAGATCATACTACGCGTTGCCTTTAAGAACGTGAGGAGGAGA
-TTAGAAGAGGATGCATTGGAGTTATACTACA--CACAGGATATACACAAAAGAAGGAACCTTGGGATCTAGTTTTGTTT
CATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATATGTGTCTTGGTGT
TACTAGCATACAGGACAAAATAAATTGCTGCTCCTCGTCTTAACATAAAAATGAAATATATGATGATTAAGTACACCATT
TCTTTTCAAGAGATCGATCAATGTGATTTCGCATATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGGTGATTCAT
TT-CGATCATAGTAGAGTTCTTCTTTTCTATGCTAATGTATCTTGCATCCTT----------------CTTGGAGTGCCC
TGTTTATTCTTTGACATTGGAGCTGGATATCATTTGTAAGTCTAGTCTCGTTCTTATTTAAAAAAATATATAATGCTATC
ATCGATCGAATTGCAATGACAGA---------------------------------------------------------
------------------TAAATAACGGAAATGAATATTTTTTTGAGAATTCACGGAAATGATATTTAGCTGACGT-AAA
AAATCTGGCTGCTCGCAGCGAACGTTATCATC--------------------------------AGGTTGCCATGTTACG
GTGCAGCAACCGTTCGCAAGAACATGGGCACCTGTGAACGAACCCTGTACCGGCACTACTCTCTCCTTCCTCTCACTCTC
CGCATTATGTGCCACCCTCCTCCCTTCCTCTTGACTTCACTCTCCTTTGCGACAACGGTTCGAGGTGGTTGCCGATTCCT
CACCATCGAATCGAGCGCCGTTGGTTGCTACCGTTGAGAGCCGCTCCCCTCCCCCCTCCCCCCCTTTTTTTGCGAATCAA
GAGCTTTATAACTCAATTAGGCTATGTTCGGTTATCTCCACCCCCGCCGGGATCGGAGACAAAACTCATCGATCCTCATG
GGTTTCGTCCCGGCCGGGGTTAGATCCCGGTCTGGCCTATAGCAGCCTTCGGTTAGACCCGGCCTGGATTAAGTCCCTCC
CAAATCCCTTCAAAACCCCGTGGAAACAGCCGGGAAATGGCCCACGCGTCTCACCCCATGGAACGAAACCCCGTCTCTCT
CGCGAGCGAAACGGTACGCTCTCTCTCGCCTCGACCCCTCGCTCCCTTTCTCGAATCTCAATTTCACGGGGAGGTCAGCA
GCAGCGCTACTGGAGGAGACCGCGGCGGCGTGCCTCCCTTTCCCCCTTCCACTTCCCTGTCCAAGCGGCGCCACCGCATC
TAGTCGCAGCAGCATGAGCTCGGCGGTGATCCGGAGCAGCCGCGACGCGAGCTATGGAGACCGAAGAAACCCATTGCCGG
CGTTACCTTACCCCGACAGTGGACCAATAATCCCTCCCTCCTATTCTTGATGCCCCTCTCACACCCTTAATTCCTAGGGT
TCATAGACTTTGATTTGAGGAAATTGGTGATACGGGGTGATTTTTGACTCCCTCTGATGATGCAAAAGCAGCTGTGCTTT
TGAGTTTGTTGTTGTGGTACCTATGATGCTACCTTTGACGTCCTTGGCATGTCTAATTGAATGAGCTGACTGCTAAATTT
TTGCCAAAGGAGTGAGGTAGTGACCGAACAGAATTTAAGACAAAGGGATTTGTGGTTAGGGTGTTGGCGGGGGGTGGGTG
ACATGAGGGGATTCACCCAATCCCTGCAGGGGTTGGTTCCCCGTGTGGATGGAAACCCCATCAACCGAACGAAGCCTTAG
GGGGGATTACACGGGAGCTGAATACAACTAGCTAAGAAAGGAGGCATATAATTTATCCACAAACATCTCCTCCTCTCTTC
TGTCGCTTGCTTTGCACACCGATGGGCCGTTTCATTGGCTTCCCTATGTACAAACACCAGACCACAACACATAAATCCTC
CCAAAAGCTCTTTGATTTCATGGCAAACAGCTGCATCTGATGCTCTCTCTGAAAGTTCAGAGTTGCACATCCTAACCACC
TACTGAGCATCACTTTCAACACATATCCATGAGTAACCCATGTCTCTGGCTAGTTGAATCCCGTCCCGGATAACGTACAA
CTCCATAGTTTGGGCACTTGATGCAAAACGATACCACAAGGCCTGCACTCTAATTAGGTTGCTTTCTGAGTCTCGGACCA
CCAGCATTGTACTTCCACACCCTGCCTGCTCAAGAAAAGCCGCATCCACATTGATTTTCAGAGTCCCTTGTTCCGATGCT
TGCCAACGATCTTCCTCCCTGGTCACCACAGGGCGGGTAGTTTCCCCTGCTGTAGTAAGGTCAACAACATTATCAAGAGC
CCATCGAACAGAAGCTTGAACTAATCGTCCCTTCTCACCATGAGTACGAGCATTCCTTTCAGACCATACCGCCCAGCAGC
CACATAGTACAATGCATACAAATTGGTCCTGTTGATTCCTCGGTTGAATGTTGCTTGAGGGCTGCTCCCCTGCTTCCACA
ATGCAACATTGGCGGAGGTACGTTGC
>chr4B_459
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----------------------------------------------------------TGTGAGTTGGGAAGGAAGAAGG
ATGGAGGCATCACAGCCGACGATGGTGTGCCATGTTTTCCTCGCCTAACATAGAAAGCTATGCTCCATCTCCAT---GTA
GGTGTTTCATTTCCTCCTTGTA---CTAGGCTGGATCGCAACATTGCAGCTTCATCTACAACACTCCTACCTAACTTTGT
CTGGAGTAGCACCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACGG-TTTTTTTTCGGAGG
GAAAACCGACACGGTTT-CTTCACTA-----GCATGCCAAGGGAAAAAAAGAAGTACCGG-AAAAATGGGTGCAGCCGTC
CCTAACCGTTGACCCGTCGCATCCCCCGGGGTGGGGTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCAA
TACAAAACCATCCATCTCCACTTCCATTCGCATCCTCCTC---ACTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAAG
GGAGGAAGAAAGAGATCTCGCCTAGCGCCACCCCGGATCCGCCATGGCCTCGGCCGCGCCGCCCCTCCTCCCCACCACCG
TCCCGGCCGCCGCGCCCGCGACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCC---ACCTCCATCGCCTCTCCGGACCCG
GCCGCCACGCGCGCCTTCCTGGGCCGCATCTACGACTCCGCCAAGCGCTCGCTCTCGGGCGCCCGCCCCTGGCCCGAGCT
CCTCGACCGCGCCGCGCTCTCGCGCCCGGACTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTCC
GCGTCAACTACGCCGCGCTCCTCGCGCTCTCCCTCGCCGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCTC
GCGCTACTCGCCGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGTCCCGCTCAACGCCCTCGGCCGCACCTT
CTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTCGTCGTCTTCCTCACGTCTGTCGGTGGGATCATCT
TCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGGGCCTTCCGCGTGCCAGAGGACCTGTTCCTCGACGAG
GTGCCCGACCAGGGTCTCGTAGGAAACGGCGCCACCCTCAACCTCCTCTCCTTCATCAACGGCGCTGCTGGAGGAGGAGG
ACGCGTCTGAGCCAGCCTCATGTCCTCAGCTCTCTGATCTGCTACGCGGAAGAGACAAGTAAAGTCTGTGGCTGGTTGAT
TCGCTTTTTCAGAAACGAAATACTTCTACTTGTTTG---AGATCGTACTACGCGTTGTCTTTAGGAGCGTGAGGAGGAGA
-TTAGAAGAGGATGCATTGGAGTTATACTACA--CACAGGATATACACATAAAAAGGAACCTTGGGATCTAGTTTTGTTT
CATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATACGTGTCTCGTTGT
TACTAGCATACACAACAAAATAAATTGCTGCTCCTCGTCTTAGCATG-AAATGAAATATATGATGATTAAGTACACCATT
TGTTTTCAAGAGATCGATCAATGTGGTTTCACATATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGATGATTCAT
TTTCGATCATAGTAGAGTTCTTCTTT-CTATGCTAATGTATCTTGCGGCAATGTGGCCCATCAATGTCATTGGAGTGCCC
TATTTATTCTTTGATATTGGAGCTGAATATCATTTGTAAGTCTAGTATCGATCTTATTTAAAAAAAT-TATAATGTTATC
ATCGATCGAATTCCAATGACAGAAGTCCATGCAAGGTGGTGAAACAAGTCCTGTGAGCCTGGTTTGAGATCTCCTTTTAC
CGTCCCCAAAAGAACCGATAAATAGCGGAAATG-----TTTTTTTAGAATTAACGGAAATGATATTTAGCTGACGT-AAA
AAATCTGGCTGCTCGCAGCGAACGGTATCATCGTCGCTGGTCACGTTGCACGAATCTTCACGTCAGGTTGCCATGTCACG
GTGCAGCAACCGTTCGCAAGAACATGGGCACCAG----CGAACCCTGTACCGGCACTACTCTCTCCTTCCTCTCACT---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
----------------------------------------S-----------------------S---------------
----------------------SSS-------------------------------------------------------
---S-------------------------------------------------------------S-------S------
-------------------------SSSSSS------------S------------------------------------
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--S-------------------------------------SSS-------------------------------------
----------------------S-------------------------------S-------------------------
-------------------S------------------------------------------------------------
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-----------S--------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------------------S--S--------S------------
--S------------S------------S---------------------------------------------------
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S-------------------------------SS--S-------------------------------------------
----------------------------------------------------------------------S----S----
-----------------------------------------------------------------S----S---------
--------------S-----------------S-----------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------S----S--S------------------------------------
---S---S-------------------S------S-S------------------------S------------------
--------------S-----------S-------S-----------------------------------S-----S---
-----------------------S------S-----------S---S--------S-------------S----------
---------S------S--S--------------------------------S---------------------------
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--------------------------------------------S----S--------------SS--SSSS--SSS-SS
SSS-SSS-------------------------------------------------------------------------
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>forward_923
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-----------------------CCATTCGCATCCTCCTCCTC-------------------------------------
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>reverse_2355
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----------------------------------AGCGGTGAAACAAGTCCTGT--------------------------
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--------------------------
