Multiple sequence alignment - TraesCS4D01G112600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G112600 chr4D 100.000 2591 0 0 1 2591 93439970 93437380 0.000000e+00 4785.0
1 TraesCS4D01G112600 chr4D 94.821 251 13 0 320 570 439874250 439874000 2.420000e-105 392.0
2 TraesCS4D01G112600 chr4D 86.420 162 20 2 2388 2548 10683713 10683553 2.650000e-40 176.0
3 TraesCS4D01G112600 chr4D 81.081 148 23 3 2388 2530 256585120 256585267 2.110000e-21 113.0
4 TraesCS4D01G112600 chr4D 93.651 63 3 1 1184 1245 93438751 93438689 2.750000e-15 93.5
5 TraesCS4D01G112600 chr4D 93.651 63 3 1 1220 1282 93438787 93438726 2.750000e-15 93.5
6 TraesCS4D01G112600 chr4B 93.664 1957 87 17 567 2508 131706614 131704680 0.000000e+00 2892.0
7 TraesCS4D01G112600 chr4A 93.794 1289 61 9 567 1836 488535263 488536551 0.000000e+00 1919.0
8 TraesCS4D01G112600 chr5D 97.598 333 5 2 1 331 423273735 423273404 3.740000e-158 568.0
9 TraesCS4D01G112600 chr5D 97.273 330 6 1 1 327 374627682 374627353 8.100000e-155 556.0
10 TraesCS4D01G112600 chr5D 97.538 325 7 1 1 324 84381430 84381754 2.910000e-154 555.0
11 TraesCS4D01G112600 chr5D 95.652 253 9 1 317 569 529804183 529804433 3.100000e-109 405.0
12 TraesCS4D01G112600 chr6D 97.289 332 7 2 1 331 108454864 108455194 1.740000e-156 562.0
13 TraesCS4D01G112600 chr6D 97.826 322 5 1 1 320 451667460 451667781 2.910000e-154 555.0
14 TraesCS4D01G112600 chr6D 82.301 226 29 9 2377 2591 145757897 145757672 4.400000e-43 185.0
15 TraesCS4D01G112600 chr6D 85.276 163 21 3 2388 2548 411938875 411938714 5.740000e-37 165.0
16 TraesCS4D01G112600 chr6D 78.652 178 31 6 2377 2548 132059124 132058948 7.580000e-21 111.0
17 TraesCS4D01G112600 chr2D 97.289 332 7 2 1 331 453730711 453731041 1.740000e-156 562.0
18 TraesCS4D01G112600 chr2D 97.006 334 5 5 1 331 86519114 86518783 8.100000e-155 556.0
19 TraesCS4D01G112600 chr2D 96.396 333 9 2 1 331 73192949 73192618 1.750000e-151 545.0
20 TraesCS4D01G112600 chr2D 93.182 264 17 1 320 583 572790966 572791228 1.120000e-103 387.0
21 TraesCS4D01G112600 chr2D 81.395 215 25 8 2388 2588 438256126 438255913 7.420000e-36 161.0
22 TraesCS4D01G112600 chr5A 96.687 332 9 2 1 331 680714201 680713871 3.770000e-153 551.0
23 TraesCS4D01G112600 chr3A 94.902 255 13 0 317 571 697434546 697434800 1.440000e-107 399.0
24 TraesCS4D01G112600 chr3A 82.710 214 23 7 2388 2588 521589353 521589565 7.370000e-41 178.0
25 TraesCS4D01G112600 chrUn 95.181 249 12 0 317 565 93261945 93262193 6.720000e-106 394.0
26 TraesCS4D01G112600 chrUn 95.528 246 11 0 320 565 252510767 252510522 6.720000e-106 394.0
27 TraesCS4D01G112600 chr3D 95.161 248 12 0 320 567 602048131 602047884 2.420000e-105 392.0
28 TraesCS4D01G112600 chr3D 94.779 249 13 0 320 568 336809111 336808863 3.130000e-104 388.0
29 TraesCS4D01G112600 chr3D 85.549 173 24 1 2377 2549 266406479 266406308 2.050000e-41 180.0
30 TraesCS4D01G112600 chr3D 78.723 141 18 6 1910 2039 340071673 340071812 1.650000e-12 84.2
31 TraesCS4D01G112600 chr1D 94.821 251 13 0 320 570 470207067 470206817 2.420000e-105 392.0
32 TraesCS4D01G112600 chr6B 86.207 174 22 2 2377 2549 379812335 379812163 1.220000e-43 187.0
33 TraesCS4D01G112600 chr6B 86.503 163 20 2 2387 2548 297287218 297287057 7.370000e-41 178.0
34 TraesCS4D01G112600 chr6B 82.075 212 26 10 2388 2587 566159877 566160088 1.230000e-38 171.0
35 TraesCS4D01G112600 chr2A 87.582 153 16 3 2388 2538 192247227 192247076 9.530000e-40 174.0
36 TraesCS4D01G112600 chr1A 81.140 228 29 8 2377 2591 38356546 38356320 1.230000e-38 171.0
37 TraesCS4D01G112600 chr7A 82.075 106 15 2 2003 2108 694770587 694770486 1.280000e-13 87.9
38 TraesCS4D01G112600 chr7A 82.075 106 15 2 2003 2108 694908150 694908049 1.280000e-13 87.9
39 TraesCS4D01G112600 chr7A 82.075 106 15 2 2003 2108 695047719 695047618 1.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G112600 chr4D 93437380 93439970 2590 True 1657.333333 4785 95.767333 1 2591 3 chr4D.!!$R3 2590
1 TraesCS4D01G112600 chr4B 131704680 131706614 1934 True 2892.000000 2892 93.664000 567 2508 1 chr4B.!!$R1 1941
2 TraesCS4D01G112600 chr4A 488535263 488536551 1288 False 1919.000000 1919 93.794000 567 1836 1 chr4A.!!$F1 1269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.034863 TACCTTGGGGGCATTTCGTC 60.035 55.0 0.0 0.0 39.1 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 1916 0.81804 AAAGTTGGTCAGTGTCCGCC 60.818 55.0 1.86 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.921634 CTCGAACTCATGGTCTTCGA 57.078 50.000 16.79 16.79 41.13 3.71
20 21 3.217599 CTCGAACTCATGGTCTTCGAA 57.782 47.619 17.75 0.00 42.47 3.71
21 22 3.575630 CTCGAACTCATGGTCTTCGAAA 58.424 45.455 17.75 0.00 42.47 3.46
22 23 4.177026 CTCGAACTCATGGTCTTCGAAAT 58.823 43.478 17.75 0.00 42.47 2.17
23 24 3.926527 TCGAACTCATGGTCTTCGAAATG 59.073 43.478 15.94 0.00 40.56 2.32
24 25 3.484229 CGAACTCATGGTCTTCGAAATGC 60.484 47.826 12.30 0.00 37.32 3.56
25 26 3.057969 ACTCATGGTCTTCGAAATGCA 57.942 42.857 0.00 0.00 0.00 3.96
26 27 3.614092 ACTCATGGTCTTCGAAATGCAT 58.386 40.909 0.00 0.00 0.00 3.96
27 28 3.376234 ACTCATGGTCTTCGAAATGCATG 59.624 43.478 0.00 0.00 0.00 4.06
28 29 3.346315 TCATGGTCTTCGAAATGCATGT 58.654 40.909 0.00 0.00 0.00 3.21
29 30 3.374988 TCATGGTCTTCGAAATGCATGTC 59.625 43.478 6.82 6.82 0.00 3.06
30 31 2.777094 TGGTCTTCGAAATGCATGTCA 58.223 42.857 17.08 1.60 0.00 3.58
31 32 3.346315 TGGTCTTCGAAATGCATGTCAT 58.654 40.909 17.08 0.00 36.87 3.06
32 33 3.758023 TGGTCTTCGAAATGCATGTCATT 59.242 39.130 17.08 8.87 46.82 2.57
33 34 4.100529 GGTCTTCGAAATGCATGTCATTG 58.899 43.478 17.08 5.78 44.23 2.82
34 35 4.100529 GTCTTCGAAATGCATGTCATTGG 58.899 43.478 17.08 1.32 44.23 3.16
35 36 3.758023 TCTTCGAAATGCATGTCATTGGT 59.242 39.130 17.08 2.67 44.23 3.67
36 37 4.218200 TCTTCGAAATGCATGTCATTGGTT 59.782 37.500 17.08 0.00 44.23 3.67
37 38 4.517952 TCGAAATGCATGTCATTGGTTT 57.482 36.364 17.08 0.00 44.23 3.27
38 39 4.236147 TCGAAATGCATGTCATTGGTTTG 58.764 39.130 17.08 1.42 44.23 2.93
39 40 4.022503 TCGAAATGCATGTCATTGGTTTGA 60.023 37.500 17.08 3.77 44.23 2.69
40 41 4.325204 CGAAATGCATGTCATTGGTTTGAG 59.675 41.667 17.08 0.00 44.23 3.02
41 42 5.471556 AAATGCATGTCATTGGTTTGAGA 57.528 34.783 13.67 0.00 44.23 3.27
42 43 3.921119 TGCATGTCATTGGTTTGAGAC 57.079 42.857 0.00 0.00 0.00 3.36
43 44 4.322198 AATGCATGTCATTGGTTTGAGACC 60.322 41.667 0.00 0.00 43.40 3.85
55 56 3.900941 GTTTGAGACCAATGCGAATTGT 58.099 40.909 15.08 3.33 31.46 2.71
56 57 4.298332 GTTTGAGACCAATGCGAATTGTT 58.702 39.130 15.08 0.00 31.46 2.83
57 58 3.557577 TGAGACCAATGCGAATTGTTG 57.442 42.857 15.08 3.24 0.00 3.33
58 59 2.228582 TGAGACCAATGCGAATTGTTGG 59.771 45.455 15.08 3.99 46.08 3.77
59 60 2.487762 GAGACCAATGCGAATTGTTGGA 59.512 45.455 15.08 0.00 43.98 3.53
60 61 2.489329 AGACCAATGCGAATTGTTGGAG 59.511 45.455 15.08 1.79 43.98 3.86
61 62 1.067635 ACCAATGCGAATTGTTGGAGC 60.068 47.619 15.08 0.00 43.98 4.70
62 63 1.632422 CAATGCGAATTGTTGGAGCC 58.368 50.000 8.06 0.00 0.00 4.70
63 64 1.067706 CAATGCGAATTGTTGGAGCCA 60.068 47.619 8.06 0.00 0.00 4.75
64 65 1.255882 ATGCGAATTGTTGGAGCCAA 58.744 45.000 0.00 0.00 0.00 4.52
72 73 4.841441 TTGGAGCCAACACCCATC 57.159 55.556 0.00 0.00 0.00 3.51
73 74 1.303236 TTGGAGCCAACACCCATCG 60.303 57.895 0.00 0.00 0.00 3.84
74 75 2.063015 TTGGAGCCAACACCCATCGT 62.063 55.000 0.00 0.00 0.00 3.73
75 76 1.303317 GGAGCCAACACCCATCGTT 60.303 57.895 0.00 0.00 0.00 3.85
76 77 1.586154 GGAGCCAACACCCATCGTTG 61.586 60.000 0.00 0.00 42.73 4.10
77 78 0.605319 GAGCCAACACCCATCGTTGA 60.605 55.000 4.66 0.00 45.30 3.18
78 79 0.889186 AGCCAACACCCATCGTTGAC 60.889 55.000 4.66 0.00 45.30 3.18
79 80 1.169661 GCCAACACCCATCGTTGACA 61.170 55.000 4.66 0.00 45.30 3.58
80 81 1.533625 CCAACACCCATCGTTGACAT 58.466 50.000 4.66 0.00 45.30 3.06
81 82 1.199789 CCAACACCCATCGTTGACATG 59.800 52.381 4.66 0.00 45.30 3.21
82 83 1.879380 CAACACCCATCGTTGACATGT 59.121 47.619 0.00 0.00 45.30 3.21
83 84 3.070748 CAACACCCATCGTTGACATGTA 58.929 45.455 0.00 0.00 45.30 2.29
84 85 3.627395 ACACCCATCGTTGACATGTAT 57.373 42.857 0.00 0.00 0.00 2.29
85 86 3.270027 ACACCCATCGTTGACATGTATG 58.730 45.455 0.00 0.00 0.00 2.39
86 87 2.032054 CACCCATCGTTGACATGTATGC 59.968 50.000 0.00 0.00 0.00 3.14
87 88 2.287769 CCCATCGTTGACATGTATGCA 58.712 47.619 0.00 0.00 0.00 3.96
88 89 2.880268 CCCATCGTTGACATGTATGCAT 59.120 45.455 3.79 3.79 35.32 3.96
89 90 3.058708 CCCATCGTTGACATGTATGCATC 60.059 47.826 0.19 0.00 31.99 3.91
90 91 3.560896 CCATCGTTGACATGTATGCATCA 59.439 43.478 0.19 1.39 31.99 3.07
91 92 4.214758 CCATCGTTGACATGTATGCATCAT 59.785 41.667 0.19 4.04 31.99 2.45
92 93 5.379827 CATCGTTGACATGTATGCATCATC 58.620 41.667 0.19 0.00 31.99 2.92
93 94 4.440880 TCGTTGACATGTATGCATCATCA 58.559 39.130 0.19 1.70 31.99 3.07
94 95 5.058490 TCGTTGACATGTATGCATCATCAT 58.942 37.500 0.19 4.27 31.26 2.45
95 96 5.528320 TCGTTGACATGTATGCATCATCATT 59.472 36.000 0.19 0.00 31.26 2.57
96 97 5.623673 CGTTGACATGTATGCATCATCATTG 59.376 40.000 0.19 5.24 31.26 2.82
97 98 6.512091 CGTTGACATGTATGCATCATCATTGA 60.512 38.462 0.19 0.00 36.00 2.57
98 99 6.554334 TGACATGTATGCATCATCATTGAG 57.446 37.500 0.19 0.00 34.73 3.02
99 100 6.292923 TGACATGTATGCATCATCATTGAGA 58.707 36.000 0.19 0.00 34.73 3.27
100 101 6.204108 TGACATGTATGCATCATCATTGAGAC 59.796 38.462 0.19 0.00 34.73 3.36
101 102 6.296803 ACATGTATGCATCATCATTGAGACT 58.703 36.000 0.19 0.00 34.73 3.24
102 103 7.447594 ACATGTATGCATCATCATTGAGACTA 58.552 34.615 0.19 0.00 34.73 2.59
103 104 7.387122 ACATGTATGCATCATCATTGAGACTAC 59.613 37.037 0.19 0.00 34.73 2.73
104 105 6.819284 TGTATGCATCATCATTGAGACTACA 58.181 36.000 0.19 0.00 34.73 2.74
105 106 7.274447 TGTATGCATCATCATTGAGACTACAA 58.726 34.615 0.19 0.00 34.73 2.41
106 107 7.769970 TGTATGCATCATCATTGAGACTACAAA 59.230 33.333 0.19 0.00 34.73 2.83
107 108 6.673154 TGCATCATCATTGAGACTACAAAG 57.327 37.500 0.00 0.00 34.73 2.77
108 109 6.175471 TGCATCATCATTGAGACTACAAAGT 58.825 36.000 0.00 0.00 34.73 2.66
109 110 6.656270 TGCATCATCATTGAGACTACAAAGTT 59.344 34.615 0.00 0.00 34.73 2.66
110 111 7.175467 TGCATCATCATTGAGACTACAAAGTTT 59.825 33.333 0.00 0.00 34.73 2.66
111 112 8.025445 GCATCATCATTGAGACTACAAAGTTTT 58.975 33.333 0.00 0.00 34.73 2.43
112 113 9.903682 CATCATCATTGAGACTACAAAGTTTTT 57.096 29.630 0.00 0.00 34.73 1.94
135 136 9.709495 TTTTTGAACAATGCAAATAAGCTATCT 57.291 25.926 0.00 0.00 35.41 1.98
147 148 9.713740 GCAAATAAGCTATCTATATGTGAATGC 57.286 33.333 0.00 0.00 0.00 3.56
153 154 9.511272 AAGCTATCTATATGTGAATGCATTGAA 57.489 29.630 18.59 1.50 0.00 2.69
154 155 9.511272 AGCTATCTATATGTGAATGCATTGAAA 57.489 29.630 18.59 3.29 0.00 2.69
205 206 1.551452 TTTACCTTGGGGGCATTTCG 58.449 50.000 0.00 0.00 39.10 3.46
206 207 0.406361 TTACCTTGGGGGCATTTCGT 59.594 50.000 0.00 0.00 39.10 3.85
207 208 0.034863 TACCTTGGGGGCATTTCGTC 60.035 55.000 0.00 0.00 39.10 4.20
208 209 2.406616 CCTTGGGGGCATTTCGTCG 61.407 63.158 0.00 0.00 0.00 5.12
209 210 1.376683 CTTGGGGGCATTTCGTCGA 60.377 57.895 0.00 0.00 0.00 4.20
210 211 0.958382 CTTGGGGGCATTTCGTCGAA 60.958 55.000 2.90 2.90 0.00 3.71
211 212 1.238625 TTGGGGGCATTTCGTCGAAC 61.239 55.000 7.29 0.00 0.00 3.95
212 213 1.673009 GGGGGCATTTCGTCGAACA 60.673 57.895 7.29 0.00 0.00 3.18
213 214 1.029947 GGGGGCATTTCGTCGAACAT 61.030 55.000 7.29 2.28 0.00 2.71
214 215 0.098728 GGGGCATTTCGTCGAACATG 59.901 55.000 7.29 14.49 0.00 3.21
215 216 0.802494 GGGCATTTCGTCGAACATGT 59.198 50.000 20.84 0.00 0.00 3.21
216 217 1.199097 GGGCATTTCGTCGAACATGTT 59.801 47.619 11.78 11.78 0.00 2.71
217 218 2.241722 GGCATTTCGTCGAACATGTTG 58.758 47.619 17.58 8.66 0.00 3.33
218 219 2.350388 GGCATTTCGTCGAACATGTTGT 60.350 45.455 17.58 0.00 0.00 3.32
219 220 3.120477 GGCATTTCGTCGAACATGTTGTA 60.120 43.478 17.58 0.00 0.00 2.41
220 221 3.838550 GCATTTCGTCGAACATGTTGTAC 59.161 43.478 17.58 12.34 0.00 2.90
221 222 3.756780 TTTCGTCGAACATGTTGTACG 57.243 42.857 25.45 25.45 0.00 3.67
222 223 1.054574 TCGTCGAACATGTTGTACGC 58.945 50.000 26.11 15.16 31.39 4.42
223 224 0.246222 CGTCGAACATGTTGTACGCG 60.246 55.000 17.58 12.87 0.00 6.01
224 225 0.780002 GTCGAACATGTTGTACGCGT 59.220 50.000 17.58 19.17 0.00 6.01
225 226 1.054574 TCGAACATGTTGTACGCGTC 58.945 50.000 18.63 8.55 0.00 5.19
226 227 0.246222 CGAACATGTTGTACGCGTCG 60.246 55.000 18.63 6.87 0.00 5.12
227 228 0.092351 GAACATGTTGTACGCGTCGG 59.908 55.000 18.63 0.00 0.00 4.79
228 229 1.893168 AACATGTTGTACGCGTCGGC 61.893 55.000 18.63 8.37 0.00 5.54
229 230 2.812178 ATGTTGTACGCGTCGGCC 60.812 61.111 18.63 3.12 35.02 6.13
246 247 4.717629 CGCCGGCTCAACGAGTGA 62.718 66.667 26.68 0.00 35.47 3.41
299 300 3.348236 CACGCCTTGCAAGCTTCT 58.652 55.556 21.43 0.00 0.00 2.85
300 301 1.656441 CACGCCTTGCAAGCTTCTT 59.344 52.632 21.43 3.11 0.00 2.52
301 302 0.386478 CACGCCTTGCAAGCTTCTTC 60.386 55.000 21.43 4.31 0.00 2.87
302 303 1.211190 CGCCTTGCAAGCTTCTTCC 59.789 57.895 21.43 1.94 0.00 3.46
303 304 1.239968 CGCCTTGCAAGCTTCTTCCT 61.240 55.000 21.43 0.00 0.00 3.36
304 305 0.525311 GCCTTGCAAGCTTCTTCCTC 59.475 55.000 21.43 0.00 0.00 3.71
305 306 1.172175 CCTTGCAAGCTTCTTCCTCC 58.828 55.000 21.43 0.00 0.00 4.30
306 307 1.271817 CCTTGCAAGCTTCTTCCTCCT 60.272 52.381 21.43 0.00 0.00 3.69
307 308 2.083002 CTTGCAAGCTTCTTCCTCCTC 58.917 52.381 14.65 0.00 0.00 3.71
308 309 0.036952 TGCAAGCTTCTTCCTCCTCG 60.037 55.000 0.00 0.00 0.00 4.63
309 310 1.365368 GCAAGCTTCTTCCTCCTCGC 61.365 60.000 0.00 0.00 0.00 5.03
310 311 0.742635 CAAGCTTCTTCCTCCTCGCC 60.743 60.000 0.00 0.00 0.00 5.54
311 312 0.907230 AAGCTTCTTCCTCCTCGCCT 60.907 55.000 0.00 0.00 0.00 5.52
312 313 0.907230 AGCTTCTTCCTCCTCGCCTT 60.907 55.000 0.00 0.00 0.00 4.35
313 314 0.461163 GCTTCTTCCTCCTCGCCTTC 60.461 60.000 0.00 0.00 0.00 3.46
314 315 0.179124 CTTCTTCCTCCTCGCCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
315 316 0.611062 TTCTTCCTCCTCGCCTTCGA 60.611 55.000 0.00 0.00 43.28 3.71
350 351 3.145551 GGCGTAGGAGGCGGAGAA 61.146 66.667 0.00 0.00 0.00 2.87
351 352 2.413765 GCGTAGGAGGCGGAGAAG 59.586 66.667 0.00 0.00 0.00 2.85
352 353 2.119655 GCGTAGGAGGCGGAGAAGA 61.120 63.158 0.00 0.00 0.00 2.87
353 354 2.026522 CGTAGGAGGCGGAGAAGAG 58.973 63.158 0.00 0.00 0.00 2.85
354 355 0.464013 CGTAGGAGGCGGAGAAGAGA 60.464 60.000 0.00 0.00 0.00 3.10
355 356 1.314730 GTAGGAGGCGGAGAAGAGAG 58.685 60.000 0.00 0.00 0.00 3.20
356 357 1.134037 GTAGGAGGCGGAGAAGAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
357 358 0.106719 AGGAGGCGGAGAAGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
358 359 0.395173 GGAGGCGGAGAAGAGAGAGT 60.395 60.000 0.00 0.00 0.00 3.24
359 360 0.738389 GAGGCGGAGAAGAGAGAGTG 59.262 60.000 0.00 0.00 0.00 3.51
360 361 1.140804 GGCGGAGAAGAGAGAGTGC 59.859 63.158 0.00 0.00 0.00 4.40
361 362 1.599606 GGCGGAGAAGAGAGAGTGCA 61.600 60.000 0.00 0.00 0.00 4.57
362 363 0.179140 GCGGAGAAGAGAGAGTGCAG 60.179 60.000 0.00 0.00 0.00 4.41
363 364 0.179140 CGGAGAAGAGAGAGTGCAGC 60.179 60.000 0.00 0.00 0.00 5.25
364 365 0.179140 GGAGAAGAGAGAGTGCAGCG 60.179 60.000 0.00 0.00 0.00 5.18
365 366 0.801836 GAGAAGAGAGAGTGCAGCGC 60.802 60.000 0.00 0.00 0.00 5.92
366 367 2.126149 AAGAGAGAGTGCAGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
367 368 2.534856 GAAGAGAGAGTGCAGCGCGA 62.535 60.000 12.10 0.00 0.00 5.87
368 369 2.540736 AAGAGAGAGTGCAGCGCGAG 62.541 60.000 12.10 1.41 0.00 5.03
408 409 4.434354 AAGCGGGCGCCCCAAATA 62.434 61.111 39.24 0.00 45.83 1.40
411 412 3.514362 CGGGCGCCCCAAATACAC 61.514 66.667 39.24 11.89 45.83 2.90
412 413 3.144871 GGGCGCCCCAAATACACC 61.145 66.667 36.64 5.01 44.65 4.16
413 414 2.361865 GGCGCCCCAAATACACCA 60.362 61.111 18.11 0.00 0.00 4.17
414 415 2.706834 GGCGCCCCAAATACACCAC 61.707 63.158 18.11 0.00 0.00 4.16
415 416 3.046497 GCGCCCCAAATACACCACG 62.046 63.158 0.00 0.00 0.00 4.94
416 417 2.882132 GCCCCAAATACACCACGC 59.118 61.111 0.00 0.00 0.00 5.34
417 418 3.046497 GCCCCAAATACACCACGCG 62.046 63.158 3.53 3.53 0.00 6.01
418 419 1.376166 CCCCAAATACACCACGCGA 60.376 57.895 15.93 0.00 0.00 5.87
419 420 1.366111 CCCCAAATACACCACGCGAG 61.366 60.000 15.93 4.16 0.00 5.03
420 421 0.390603 CCCAAATACACCACGCGAGA 60.391 55.000 15.93 0.00 0.00 4.04
421 422 1.651987 CCAAATACACCACGCGAGAT 58.348 50.000 15.93 0.00 0.00 2.75
422 423 2.482316 CCCAAATACACCACGCGAGATA 60.482 50.000 15.93 0.00 0.00 1.98
423 424 2.794910 CCAAATACACCACGCGAGATAG 59.205 50.000 15.93 0.11 0.00 2.08
424 425 2.135664 AATACACCACGCGAGATAGC 57.864 50.000 15.93 0.00 0.00 2.97
433 434 2.714530 GCGAGATAGCGAATCCGAC 58.285 57.895 13.15 5.31 38.22 4.79
434 435 0.729816 GCGAGATAGCGAATCCGACC 60.730 60.000 13.15 0.00 38.22 4.79
435 436 0.452950 CGAGATAGCGAATCCGACCG 60.453 60.000 0.00 0.00 38.22 4.79
452 453 2.513897 GCGCGCCCAACTCCTTAT 60.514 61.111 23.24 0.00 0.00 1.73
453 454 1.227438 GCGCGCCCAACTCCTTATA 60.227 57.895 23.24 0.00 0.00 0.98
454 455 1.496403 GCGCGCCCAACTCCTTATAC 61.496 60.000 23.24 0.00 0.00 1.47
455 456 0.878961 CGCGCCCAACTCCTTATACC 60.879 60.000 0.00 0.00 0.00 2.73
456 457 0.878961 GCGCCCAACTCCTTATACCG 60.879 60.000 0.00 0.00 0.00 4.02
457 458 0.878961 CGCCCAACTCCTTATACCGC 60.879 60.000 0.00 0.00 0.00 5.68
458 459 0.878961 GCCCAACTCCTTATACCGCG 60.879 60.000 0.00 0.00 0.00 6.46
459 460 0.462789 CCCAACTCCTTATACCGCGT 59.537 55.000 4.92 0.00 0.00 6.01
460 461 1.567504 CCAACTCCTTATACCGCGTG 58.432 55.000 4.92 0.00 0.00 5.34
461 462 0.928229 CAACTCCTTATACCGCGTGC 59.072 55.000 4.92 0.00 0.00 5.34
462 463 0.526954 AACTCCTTATACCGCGTGCG 60.527 55.000 4.92 7.38 39.44 5.34
463 464 2.278989 TCCTTATACCGCGTGCGC 60.279 61.111 9.07 0.00 38.24 6.09
518 519 4.828341 CGCGCGCGCTAAACTGAC 62.828 66.667 45.97 19.75 39.32 3.51
519 520 4.500568 GCGCGCGCTAAACTGACC 62.501 66.667 44.38 14.45 38.26 4.02
520 521 3.109547 CGCGCGCTAAACTGACCA 61.110 61.111 30.48 0.00 0.00 4.02
521 522 2.663478 CGCGCGCTAAACTGACCAA 61.663 57.895 30.48 0.00 0.00 3.67
522 523 1.572447 GCGCGCTAAACTGACCAAA 59.428 52.632 26.67 0.00 0.00 3.28
523 524 0.168128 GCGCGCTAAACTGACCAAAT 59.832 50.000 26.67 0.00 0.00 2.32
524 525 1.401018 GCGCGCTAAACTGACCAAATT 60.401 47.619 26.67 0.00 0.00 1.82
525 526 2.920647 GCGCGCTAAACTGACCAAATTT 60.921 45.455 26.67 0.00 0.00 1.82
526 527 2.656422 CGCGCTAAACTGACCAAATTTG 59.344 45.455 11.40 11.40 0.00 2.32
527 528 2.408368 GCGCTAAACTGACCAAATTTGC 59.592 45.455 12.92 0.80 0.00 3.68
528 529 2.656422 CGCTAAACTGACCAAATTTGCG 59.344 45.455 12.92 8.64 31.66 4.85
529 530 2.986479 GCTAAACTGACCAAATTTGCGG 59.014 45.455 12.92 7.75 0.00 5.69
530 531 1.864565 AAACTGACCAAATTTGCGGC 58.135 45.000 12.92 8.88 0.00 6.53
531 532 0.318614 AACTGACCAAATTTGCGGCG 60.319 50.000 12.92 0.51 0.00 6.46
532 533 2.049618 TGACCAAATTTGCGGCGC 60.050 55.556 27.44 27.44 0.00 6.53
533 534 3.171911 GACCAAATTTGCGGCGCG 61.172 61.111 28.09 13.33 0.00 6.86
534 535 4.715892 ACCAAATTTGCGGCGCGG 62.716 61.111 28.09 22.36 0.00 6.46
557 558 3.004024 CTTGTTTAGCACAGCTGTTGG 57.996 47.619 18.94 8.39 40.10 3.77
558 559 2.340210 TGTTTAGCACAGCTGTTGGA 57.660 45.000 18.94 1.38 40.10 3.53
559 560 2.221169 TGTTTAGCACAGCTGTTGGAG 58.779 47.619 18.94 7.13 40.10 3.86
560 561 2.158827 TGTTTAGCACAGCTGTTGGAGA 60.159 45.455 18.94 0.27 40.10 3.71
561 562 3.077359 GTTTAGCACAGCTGTTGGAGAT 58.923 45.455 18.94 7.32 40.10 2.75
562 563 2.391616 TAGCACAGCTGTTGGAGATG 57.608 50.000 18.94 5.13 44.22 2.90
563 564 0.959372 AGCACAGCTGTTGGAGATGC 60.959 55.000 18.94 15.77 42.24 3.91
564 565 0.959372 GCACAGCTGTTGGAGATGCT 60.959 55.000 18.94 0.00 42.24 3.79
565 566 1.085091 CACAGCTGTTGGAGATGCTC 58.915 55.000 18.94 0.00 42.24 4.26
669 670 4.005650 ACCATTACACATGCACTTCTCAG 58.994 43.478 0.00 0.00 0.00 3.35
683 684 1.267121 TCTCAGTCTACCAACCCTGC 58.733 55.000 0.00 0.00 0.00 4.85
777 779 1.821216 GGTGGCCGATTTCTTGAGAA 58.179 50.000 0.00 0.00 0.00 2.87
781 783 2.010497 GGCCGATTTCTTGAGAAGGAC 58.990 52.381 0.00 0.00 35.21 3.85
834 836 3.963428 TCTTCTCTTTACACCCTGCTC 57.037 47.619 0.00 0.00 0.00 4.26
911 913 4.258543 CACTTCTTGGCTTATAAACCGGA 58.741 43.478 9.46 0.00 0.00 5.14
993 995 2.754002 CTCATGAGAGCAGTCTGTCAGA 59.246 50.000 18.34 0.00 44.43 3.27
1039 1041 2.588877 CGATGGTGGCGGTGATCC 60.589 66.667 0.00 0.00 0.00 3.36
1057 1059 1.525995 CTCCTGGTGGCGTGTTGTT 60.526 57.895 0.00 0.00 0.00 2.83
1058 1060 1.507141 CTCCTGGTGGCGTGTTGTTC 61.507 60.000 0.00 0.00 0.00 3.18
1606 1616 2.047179 GAGGTGTTGGGCTCCGTC 60.047 66.667 0.00 0.00 35.96 4.79
1826 1847 8.079809 GTGCATACAGTACTGTTTATTTTGGTT 58.920 33.333 32.15 6.64 41.83 3.67
1886 1907 0.463833 AATCCGATCCCTCAAACGCC 60.464 55.000 0.00 0.00 0.00 5.68
1909 1930 3.986006 GTCGGCGGACACTGACCA 61.986 66.667 18.61 0.00 42.91 4.02
1911 1932 3.041940 CGGCGGACACTGACCAAC 61.042 66.667 0.00 0.00 0.00 3.77
1912 1933 2.426023 GGCGGACACTGACCAACT 59.574 61.111 0.00 0.00 0.00 3.16
1913 1934 1.227853 GGCGGACACTGACCAACTT 60.228 57.895 0.00 0.00 0.00 2.66
1914 1935 0.818040 GGCGGACACTGACCAACTTT 60.818 55.000 0.00 0.00 0.00 2.66
1933 1966 6.808008 ACTTTCAATCTCACAATCGAACAT 57.192 33.333 0.00 0.00 0.00 2.71
2012 2045 4.823442 ACATCGTCCCGATACTACAACATA 59.177 41.667 0.00 0.00 45.19 2.29
2035 2068 6.575162 ACCATCAGACTACCAAAATTTGAC 57.425 37.500 7.37 0.00 0.00 3.18
2042 2075 9.126151 TCAGACTACCAAAATTTGACATGTTTA 57.874 29.630 7.37 0.00 0.00 2.01
2043 2076 9.180678 CAGACTACCAAAATTTGACATGTTTAC 57.819 33.333 7.37 0.00 0.00 2.01
2046 2079 8.141268 ACTACCAAAATTTGACATGTTTACCTG 58.859 33.333 7.37 0.00 0.00 4.00
2052 2085 7.523293 AATTTGACATGTTTACCTGTGATGA 57.477 32.000 0.00 0.00 0.00 2.92
2078 2111 3.025599 ATCCATGGCTGCCCCTGT 61.026 61.111 17.53 0.00 0.00 4.00
2114 2147 5.067273 CCTGACTGTCCTTCTCGAGTATAT 58.933 45.833 13.13 0.00 0.00 0.86
2116 2149 6.370442 CCTGACTGTCCTTCTCGAGTATATAG 59.630 46.154 13.13 7.88 0.00 1.31
2147 2180 1.142936 AGGGGATGCAGCATCATACA 58.857 50.000 31.89 0.00 42.13 2.29
2165 2204 0.958091 CAAACACGATGGCCTGGAAA 59.042 50.000 3.32 0.00 0.00 3.13
2189 2228 0.652592 CGAGTGAATCGTTGCATCCC 59.347 55.000 0.00 0.00 46.62 3.85
2190 2229 1.740380 CGAGTGAATCGTTGCATCCCT 60.740 52.381 0.00 0.00 46.62 4.20
2191 2230 1.936547 GAGTGAATCGTTGCATCCCTC 59.063 52.381 0.00 0.00 0.00 4.30
2192 2231 0.652592 GTGAATCGTTGCATCCCTCG 59.347 55.000 0.00 0.00 0.00 4.63
2193 2232 0.249120 TGAATCGTTGCATCCCTCGT 59.751 50.000 0.00 0.00 0.00 4.18
2194 2233 1.478916 TGAATCGTTGCATCCCTCGTA 59.521 47.619 0.00 0.00 0.00 3.43
2195 2234 2.102420 TGAATCGTTGCATCCCTCGTAT 59.898 45.455 0.00 0.00 0.00 3.06
2196 2235 3.319689 TGAATCGTTGCATCCCTCGTATA 59.680 43.478 0.00 0.00 0.00 1.47
2197 2236 4.202172 TGAATCGTTGCATCCCTCGTATAA 60.202 41.667 0.00 0.00 0.00 0.98
2198 2237 3.364889 TCGTTGCATCCCTCGTATAAG 57.635 47.619 0.00 0.00 0.00 1.73
2199 2238 2.691526 TCGTTGCATCCCTCGTATAAGT 59.308 45.455 0.00 0.00 0.00 2.24
2200 2239 3.884693 TCGTTGCATCCCTCGTATAAGTA 59.115 43.478 0.00 0.00 0.00 2.24
2201 2240 4.338964 TCGTTGCATCCCTCGTATAAGTAA 59.661 41.667 0.00 0.00 0.00 2.24
2202 2241 4.443394 CGTTGCATCCCTCGTATAAGTAAC 59.557 45.833 0.00 0.00 0.00 2.50
2203 2242 5.598769 GTTGCATCCCTCGTATAAGTAACT 58.401 41.667 0.00 0.00 0.00 2.24
2204 2243 5.196341 TGCATCCCTCGTATAAGTAACTG 57.804 43.478 0.00 0.00 0.00 3.16
2205 2244 3.988517 GCATCCCTCGTATAAGTAACTGC 59.011 47.826 0.00 0.00 0.00 4.40
2206 2245 4.500887 GCATCCCTCGTATAAGTAACTGCA 60.501 45.833 0.00 0.00 0.00 4.41
2207 2246 5.784177 CATCCCTCGTATAAGTAACTGCAT 58.216 41.667 0.00 0.00 0.00 3.96
2305 2344 5.808366 ATTAAGTCTTGACCACACTCTCA 57.192 39.130 0.00 0.00 0.00 3.27
2356 2395 4.851843 TCATCATGTGAAATCAAGGCTCT 58.148 39.130 0.00 0.00 32.78 4.09
2402 2441 9.338291 GATATTTCGTTAAAACTCCTTCAAACC 57.662 33.333 0.00 0.00 0.00 3.27
2409 2448 7.921745 CGTTAAAACTCCTTCAAACCCAATAAA 59.078 33.333 0.00 0.00 0.00 1.40
2508 2547 8.640063 TTAGAGGACAATAGTTATGCCGTATA 57.360 34.615 0.00 0.00 0.00 1.47
2509 2548 7.719871 AGAGGACAATAGTTATGCCGTATAT 57.280 36.000 0.00 0.00 0.00 0.86
2510 2549 8.818622 AGAGGACAATAGTTATGCCGTATATA 57.181 34.615 0.00 0.00 0.00 0.86
2511 2550 8.684520 AGAGGACAATAGTTATGCCGTATATAC 58.315 37.037 2.53 2.53 0.00 1.47
2512 2551 8.591114 AGGACAATAGTTATGCCGTATATACT 57.409 34.615 11.05 0.00 0.00 2.12
2513 2552 9.032624 AGGACAATAGTTATGCCGTATATACTT 57.967 33.333 11.05 0.00 0.00 2.24
2514 2553 9.649167 GGACAATAGTTATGCCGTATATACTTT 57.351 33.333 11.05 0.00 0.00 2.66
2516 2555 9.649167 ACAATAGTTATGCCGTATATACTTTCC 57.351 33.333 11.05 0.00 0.00 3.13
2517 2556 9.871238 CAATAGTTATGCCGTATATACTTTCCT 57.129 33.333 11.05 1.25 0.00 3.36
2525 2564 7.614494 TGCCGTATATACTTTCCTATAAACCC 58.386 38.462 11.05 0.00 0.00 4.11
2526 2565 7.044181 GCCGTATATACTTTCCTATAAACCCC 58.956 42.308 11.05 0.00 0.00 4.95
2527 2566 7.260603 CCGTATATACTTTCCTATAAACCCCG 58.739 42.308 11.05 0.00 0.00 5.73
2528 2567 7.260603 CGTATATACTTTCCTATAAACCCCGG 58.739 42.308 11.05 0.00 0.00 5.73
2529 2568 7.093771 CGTATATACTTTCCTATAAACCCCGGT 60.094 40.741 11.05 0.00 0.00 5.28
2530 2569 9.255029 GTATATACTTTCCTATAAACCCCGGTA 57.745 37.037 5.58 0.00 0.00 4.02
2531 2570 8.740616 ATATACTTTCCTATAAACCCCGGTAA 57.259 34.615 0.00 0.00 0.00 2.85
2532 2571 5.363562 ACTTTCCTATAAACCCCGGTAAG 57.636 43.478 0.00 0.00 32.31 2.34
2533 2572 4.164796 ACTTTCCTATAAACCCCGGTAAGG 59.835 45.833 0.00 0.00 40.63 2.69
2548 2587 6.915544 CCGGTAAGGGAAACTAGAAAATAC 57.084 41.667 0.00 0.00 35.97 1.89
2549 2588 6.647229 CCGGTAAGGGAAACTAGAAAATACT 58.353 40.000 0.00 0.00 35.97 2.12
2550 2589 6.760298 CCGGTAAGGGAAACTAGAAAATACTC 59.240 42.308 0.00 0.00 35.97 2.59
2551 2590 7.325694 CGGTAAGGGAAACTAGAAAATACTCA 58.674 38.462 0.00 0.00 0.00 3.41
2552 2591 7.985752 CGGTAAGGGAAACTAGAAAATACTCAT 59.014 37.037 0.00 0.00 0.00 2.90
2553 2592 9.110502 GGTAAGGGAAACTAGAAAATACTCATG 57.889 37.037 0.00 0.00 0.00 3.07
2554 2593 9.668497 GTAAGGGAAACTAGAAAATACTCATGT 57.332 33.333 0.00 0.00 0.00 3.21
2556 2595 8.567285 AGGGAAACTAGAAAATACTCATGTTG 57.433 34.615 0.00 0.00 0.00 3.33
2557 2596 8.383175 AGGGAAACTAGAAAATACTCATGTTGA 58.617 33.333 0.00 0.00 0.00 3.18
2558 2597 9.178758 GGGAAACTAGAAAATACTCATGTTGAT 57.821 33.333 0.00 0.00 0.00 2.57
2585 2624 9.729281 ATTACCTAAATAAAAACCTTGACGAGA 57.271 29.630 0.00 0.00 0.00 4.04
2586 2625 9.558396 TTACCTAAATAAAAACCTTGACGAGAA 57.442 29.630 0.00 0.00 0.00 2.87
2587 2626 7.868775 ACCTAAATAAAAACCTTGACGAGAAC 58.131 34.615 0.00 0.00 0.00 3.01
2588 2627 7.499895 ACCTAAATAAAAACCTTGACGAGAACA 59.500 33.333 0.00 0.00 0.00 3.18
2589 2628 8.512138 CCTAAATAAAAACCTTGACGAGAACAT 58.488 33.333 0.00 0.00 0.00 2.71
2590 2629 9.329913 CTAAATAAAAACCTTGACGAGAACATG 57.670 33.333 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.921634 TCGAAGACCATGAGTTCGAG 57.078 50.000 17.44 0.00 45.23 4.04
2 3 3.484229 GCATTTCGAAGACCATGAGTTCG 60.484 47.826 10.93 14.33 43.48 3.95
3 4 3.436704 TGCATTTCGAAGACCATGAGTTC 59.563 43.478 10.93 0.00 34.32 3.01
4 5 3.411446 TGCATTTCGAAGACCATGAGTT 58.589 40.909 10.93 0.00 34.32 3.01
5 6 3.057969 TGCATTTCGAAGACCATGAGT 57.942 42.857 10.93 0.00 34.32 3.41
6 7 3.376234 ACATGCATTTCGAAGACCATGAG 59.624 43.478 26.55 13.25 34.70 2.90
7 8 3.346315 ACATGCATTTCGAAGACCATGA 58.654 40.909 26.55 9.85 34.70 3.07
8 9 3.127376 TGACATGCATTTCGAAGACCATG 59.873 43.478 21.88 21.88 36.09 3.66
9 10 3.346315 TGACATGCATTTCGAAGACCAT 58.654 40.909 8.27 0.00 34.32 3.55
10 11 2.777094 TGACATGCATTTCGAAGACCA 58.223 42.857 8.27 0.00 34.32 4.02
11 12 4.100529 CAATGACATGCATTTCGAAGACC 58.899 43.478 8.27 0.00 44.68 3.85
12 13 4.100529 CCAATGACATGCATTTCGAAGAC 58.899 43.478 8.27 0.00 44.68 3.01
13 14 3.758023 ACCAATGACATGCATTTCGAAGA 59.242 39.130 8.27 0.00 44.68 2.87
14 15 4.100707 ACCAATGACATGCATTTCGAAG 57.899 40.909 8.27 0.71 44.68 3.79
15 16 4.517952 AACCAATGACATGCATTTCGAA 57.482 36.364 8.27 0.00 44.68 3.71
16 17 4.022503 TCAAACCAATGACATGCATTTCGA 60.023 37.500 8.27 0.00 44.68 3.71
17 18 4.236147 TCAAACCAATGACATGCATTTCG 58.764 39.130 8.27 8.15 44.68 3.46
18 19 5.346822 GTCTCAAACCAATGACATGCATTTC 59.653 40.000 5.88 5.88 44.68 2.17
19 20 5.232463 GTCTCAAACCAATGACATGCATTT 58.768 37.500 11.21 0.00 44.68 2.32
21 22 4.445452 GTCTCAAACCAATGACATGCAT 57.555 40.909 0.00 0.00 39.43 3.96
22 23 3.921119 GTCTCAAACCAATGACATGCA 57.079 42.857 0.00 0.00 0.00 3.96
34 35 3.900941 ACAATTCGCATTGGTCTCAAAC 58.099 40.909 12.39 0.00 43.82 2.93
35 36 4.297510 CAACAATTCGCATTGGTCTCAAA 58.702 39.130 12.39 0.00 43.82 2.69
36 37 3.305267 CCAACAATTCGCATTGGTCTCAA 60.305 43.478 12.39 0.00 43.82 3.02
37 38 2.228582 CCAACAATTCGCATTGGTCTCA 59.771 45.455 12.39 0.00 43.82 3.27
38 39 2.487762 TCCAACAATTCGCATTGGTCTC 59.512 45.455 12.39 0.00 43.82 3.36
39 40 2.489329 CTCCAACAATTCGCATTGGTCT 59.511 45.455 12.39 0.00 43.82 3.85
40 41 2.867429 CTCCAACAATTCGCATTGGTC 58.133 47.619 12.39 0.00 43.82 4.02
41 42 1.067635 GCTCCAACAATTCGCATTGGT 60.068 47.619 12.39 2.22 43.82 3.67
42 43 1.632422 GCTCCAACAATTCGCATTGG 58.368 50.000 12.39 4.95 43.82 3.16
43 44 1.067706 TGGCTCCAACAATTCGCATTG 60.068 47.619 6.22 6.22 44.90 2.82
44 45 1.255882 TGGCTCCAACAATTCGCATT 58.744 45.000 0.00 0.00 0.00 3.56
45 46 1.255882 TTGGCTCCAACAATTCGCAT 58.744 45.000 0.00 0.00 0.00 4.73
46 47 2.725811 TTGGCTCCAACAATTCGCA 58.274 47.368 0.00 0.00 0.00 5.10
55 56 1.303236 CGATGGGTGTTGGCTCCAA 60.303 57.895 0.00 0.00 33.90 3.53
56 57 2.063015 AACGATGGGTGTTGGCTCCA 62.063 55.000 0.00 0.00 34.79 3.86
57 58 1.303317 AACGATGGGTGTTGGCTCC 60.303 57.895 0.00 0.00 0.00 4.70
58 59 0.605319 TCAACGATGGGTGTTGGCTC 60.605 55.000 6.06 0.00 45.22 4.70
59 60 0.889186 GTCAACGATGGGTGTTGGCT 60.889 55.000 3.41 0.00 45.86 4.75
60 61 1.579429 GTCAACGATGGGTGTTGGC 59.421 57.895 6.06 0.48 45.22 4.52
61 62 1.199789 CATGTCAACGATGGGTGTTGG 59.800 52.381 6.06 0.00 45.22 3.77
62 63 1.879380 ACATGTCAACGATGGGTGTTG 59.121 47.619 0.00 0.00 46.23 3.33
63 64 2.270352 ACATGTCAACGATGGGTGTT 57.730 45.000 0.00 0.00 0.00 3.32
64 65 3.270027 CATACATGTCAACGATGGGTGT 58.730 45.455 0.00 0.00 0.00 4.16
65 66 2.032054 GCATACATGTCAACGATGGGTG 59.968 50.000 0.00 0.00 0.00 4.61
66 67 2.288666 GCATACATGTCAACGATGGGT 58.711 47.619 0.00 0.00 0.00 4.51
67 68 2.287769 TGCATACATGTCAACGATGGG 58.712 47.619 0.00 0.00 0.00 4.00
68 69 3.560896 TGATGCATACATGTCAACGATGG 59.439 43.478 0.00 0.00 36.35 3.51
69 70 4.799419 TGATGCATACATGTCAACGATG 57.201 40.909 0.00 0.75 36.35 3.84
70 71 5.058490 TGATGATGCATACATGTCAACGAT 58.942 37.500 0.00 0.00 36.35 3.73
71 72 4.440880 TGATGATGCATACATGTCAACGA 58.559 39.130 0.00 0.00 36.35 3.85
72 73 4.799419 TGATGATGCATACATGTCAACG 57.201 40.909 0.00 0.00 36.35 4.10
73 74 6.731164 TCAATGATGATGCATACATGTCAAC 58.269 36.000 0.00 2.06 36.35 3.18
74 75 6.768861 TCTCAATGATGATGCATACATGTCAA 59.231 34.615 0.00 0.00 36.35 3.18
75 76 6.204108 GTCTCAATGATGATGCATACATGTCA 59.796 38.462 0.00 9.43 36.35 3.58
76 77 6.427242 AGTCTCAATGATGATGCATACATGTC 59.573 38.462 0.00 5.14 36.35 3.06
77 78 6.296803 AGTCTCAATGATGATGCATACATGT 58.703 36.000 13.97 2.69 36.35 3.21
78 79 6.803154 AGTCTCAATGATGATGCATACATG 57.197 37.500 13.97 0.00 36.35 3.21
79 80 7.447594 TGTAGTCTCAATGATGATGCATACAT 58.552 34.615 0.00 5.21 39.98 2.29
80 81 6.819284 TGTAGTCTCAATGATGATGCATACA 58.181 36.000 0.00 0.75 34.37 2.29
81 82 7.719778 TTGTAGTCTCAATGATGATGCATAC 57.280 36.000 0.00 0.00 34.37 2.39
82 83 7.989170 ACTTTGTAGTCTCAATGATGATGCATA 59.011 33.333 0.00 0.00 34.37 3.14
83 84 6.827251 ACTTTGTAGTCTCAATGATGATGCAT 59.173 34.615 0.00 0.00 34.37 3.96
84 85 6.175471 ACTTTGTAGTCTCAATGATGATGCA 58.825 36.000 0.00 0.00 34.37 3.96
85 86 6.674694 ACTTTGTAGTCTCAATGATGATGC 57.325 37.500 0.00 0.00 34.37 3.91
86 87 9.903682 AAAAACTTTGTAGTCTCAATGATGATG 57.096 29.630 0.00 0.00 31.59 3.07
109 110 9.709495 AGATAGCTTATTTGCATTGTTCAAAAA 57.291 25.926 0.00 0.00 37.04 1.94
121 122 9.713740 GCATTCACATATAGATAGCTTATTTGC 57.286 33.333 0.00 0.00 0.00 3.68
127 128 9.511272 TTCAATGCATTCACATATAGATAGCTT 57.489 29.630 9.53 0.00 0.00 3.74
128 129 9.511272 TTTCAATGCATTCACATATAGATAGCT 57.489 29.630 9.53 0.00 0.00 3.32
184 185 2.300437 CGAAATGCCCCCAAGGTAAAAA 59.700 45.455 0.00 0.00 38.26 1.94
185 186 1.896465 CGAAATGCCCCCAAGGTAAAA 59.104 47.619 0.00 0.00 38.26 1.52
186 187 1.203075 ACGAAATGCCCCCAAGGTAAA 60.203 47.619 0.00 0.00 38.26 2.01
187 188 0.406361 ACGAAATGCCCCCAAGGTAA 59.594 50.000 0.00 0.00 38.26 2.85
188 189 0.034863 GACGAAATGCCCCCAAGGTA 60.035 55.000 0.00 0.00 38.26 3.08
189 190 1.304134 GACGAAATGCCCCCAAGGT 60.304 57.895 0.00 0.00 38.26 3.50
190 191 2.406616 CGACGAAATGCCCCCAAGG 61.407 63.158 0.00 0.00 39.47 3.61
191 192 0.958382 TTCGACGAAATGCCCCCAAG 60.958 55.000 8.05 0.00 0.00 3.61
192 193 1.073373 TTCGACGAAATGCCCCCAA 59.927 52.632 8.05 0.00 0.00 4.12
193 194 1.673009 GTTCGACGAAATGCCCCCA 60.673 57.895 12.67 0.00 0.00 4.96
194 195 1.029947 ATGTTCGACGAAATGCCCCC 61.030 55.000 12.67 0.00 0.00 5.40
195 196 0.098728 CATGTTCGACGAAATGCCCC 59.901 55.000 12.67 0.00 0.00 5.80
196 197 0.802494 ACATGTTCGACGAAATGCCC 59.198 50.000 21.83 9.39 0.00 5.36
197 198 2.241722 CAACATGTTCGACGAAATGCC 58.758 47.619 21.83 9.67 0.00 4.40
198 199 2.916111 ACAACATGTTCGACGAAATGC 58.084 42.857 21.83 9.95 0.00 3.56
199 200 4.072244 CGTACAACATGTTCGACGAAATG 58.928 43.478 26.52 18.19 42.49 2.32
200 201 3.422603 GCGTACAACATGTTCGACGAAAT 60.423 43.478 31.34 5.73 42.49 2.17
201 202 2.097299 GCGTACAACATGTTCGACGAAA 60.097 45.455 31.34 3.49 42.49 3.46
202 203 1.452773 GCGTACAACATGTTCGACGAA 59.547 47.619 31.34 6.10 42.49 3.85
203 204 1.054574 GCGTACAACATGTTCGACGA 58.945 50.000 31.34 0.00 42.49 4.20
204 205 0.246222 CGCGTACAACATGTTCGACG 60.246 55.000 26.38 26.38 42.49 5.12
205 206 0.780002 ACGCGTACAACATGTTCGAC 59.220 50.000 11.67 14.16 42.49 4.20
206 207 1.054574 GACGCGTACAACATGTTCGA 58.945 50.000 13.97 4.50 42.49 3.71
207 208 0.246222 CGACGCGTACAACATGTTCG 60.246 55.000 13.97 11.41 42.71 3.95
208 209 0.092351 CCGACGCGTACAACATGTTC 59.908 55.000 13.97 0.00 0.00 3.18
209 210 1.893168 GCCGACGCGTACAACATGTT 61.893 55.000 13.97 4.92 0.00 2.71
210 211 2.377310 GCCGACGCGTACAACATGT 61.377 57.895 13.97 0.00 0.00 3.21
211 212 2.394136 GCCGACGCGTACAACATG 59.606 61.111 13.97 0.00 0.00 3.21
212 213 2.812178 GGCCGACGCGTACAACAT 60.812 61.111 13.97 0.00 35.02 2.71
229 230 4.717629 TCACTCGTTGAGCCGGCG 62.718 66.667 23.20 6.32 32.04 6.46
230 231 2.811317 CTCACTCGTTGAGCCGGC 60.811 66.667 21.89 21.89 45.51 6.13
282 283 0.386478 GAAGAAGCTTGCAAGGCGTG 60.386 55.000 27.10 3.27 34.52 5.34
283 284 1.518903 GGAAGAAGCTTGCAAGGCGT 61.519 55.000 27.10 17.01 34.52 5.68
284 285 1.211190 GGAAGAAGCTTGCAAGGCG 59.789 57.895 27.10 4.07 34.52 5.52
285 286 0.525311 GAGGAAGAAGCTTGCAAGGC 59.475 55.000 27.10 18.65 0.00 4.35
286 287 1.172175 GGAGGAAGAAGCTTGCAAGG 58.828 55.000 27.10 9.80 0.00 3.61
287 288 2.083002 GAGGAGGAAGAAGCTTGCAAG 58.917 52.381 22.44 22.44 0.00 4.01
288 289 1.609061 CGAGGAGGAAGAAGCTTGCAA 60.609 52.381 2.10 0.00 0.00 4.08
289 290 0.036952 CGAGGAGGAAGAAGCTTGCA 60.037 55.000 2.10 0.00 0.00 4.08
290 291 1.365368 GCGAGGAGGAAGAAGCTTGC 61.365 60.000 2.10 0.00 0.00 4.01
291 292 0.742635 GGCGAGGAGGAAGAAGCTTG 60.743 60.000 2.10 0.00 0.00 4.01
292 293 0.907230 AGGCGAGGAGGAAGAAGCTT 60.907 55.000 0.00 0.00 0.00 3.74
293 294 0.907230 AAGGCGAGGAGGAAGAAGCT 60.907 55.000 0.00 0.00 0.00 3.74
294 295 0.461163 GAAGGCGAGGAGGAAGAAGC 60.461 60.000 0.00 0.00 0.00 3.86
295 296 0.179124 CGAAGGCGAGGAGGAAGAAG 60.179 60.000 0.00 0.00 40.82 2.85
296 297 0.611062 TCGAAGGCGAGGAGGAAGAA 60.611 55.000 0.00 0.00 42.51 2.52
297 298 1.001269 TCGAAGGCGAGGAGGAAGA 60.001 57.895 0.00 0.00 42.51 2.87
298 299 3.604629 TCGAAGGCGAGGAGGAAG 58.395 61.111 0.00 0.00 42.51 3.46
333 334 3.140225 CTTCTCCGCCTCCTACGCC 62.140 68.421 0.00 0.00 0.00 5.68
334 335 2.065906 CTCTTCTCCGCCTCCTACGC 62.066 65.000 0.00 0.00 0.00 4.42
335 336 0.464013 TCTCTTCTCCGCCTCCTACG 60.464 60.000 0.00 0.00 0.00 3.51
336 337 1.134037 TCTCTCTTCTCCGCCTCCTAC 60.134 57.143 0.00 0.00 0.00 3.18
337 338 1.142060 CTCTCTCTTCTCCGCCTCCTA 59.858 57.143 0.00 0.00 0.00 2.94
338 339 0.106719 CTCTCTCTTCTCCGCCTCCT 60.107 60.000 0.00 0.00 0.00 3.69
339 340 0.395173 ACTCTCTCTTCTCCGCCTCC 60.395 60.000 0.00 0.00 0.00 4.30
340 341 0.738389 CACTCTCTCTTCTCCGCCTC 59.262 60.000 0.00 0.00 0.00 4.70
341 342 1.319614 GCACTCTCTCTTCTCCGCCT 61.320 60.000 0.00 0.00 0.00 5.52
342 343 1.140804 GCACTCTCTCTTCTCCGCC 59.859 63.158 0.00 0.00 0.00 6.13
343 344 0.179140 CTGCACTCTCTCTTCTCCGC 60.179 60.000 0.00 0.00 0.00 5.54
344 345 0.179140 GCTGCACTCTCTCTTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
345 346 0.179140 CGCTGCACTCTCTCTTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
346 347 0.801836 GCGCTGCACTCTCTCTTCTC 60.802 60.000 0.00 0.00 0.00 2.87
347 348 1.215117 GCGCTGCACTCTCTCTTCT 59.785 57.895 0.00 0.00 0.00 2.85
348 349 2.157701 CGCGCTGCACTCTCTCTTC 61.158 63.158 5.56 0.00 0.00 2.87
349 350 2.126149 CGCGCTGCACTCTCTCTT 60.126 61.111 5.56 0.00 0.00 2.85
350 351 3.050166 CTCGCGCTGCACTCTCTCT 62.050 63.158 5.56 0.00 0.00 3.10
351 352 2.579249 CTCGCGCTGCACTCTCTC 60.579 66.667 5.56 0.00 0.00 3.20
352 353 4.792648 GCTCGCGCTGCACTCTCT 62.793 66.667 16.72 0.00 0.00 3.10
395 396 3.144871 GGTGTATTTGGGGCGCCC 61.145 66.667 38.57 38.57 45.71 6.13
396 397 2.361865 TGGTGTATTTGGGGCGCC 60.362 61.111 21.18 21.18 0.00 6.53
397 398 2.882132 GTGGTGTATTTGGGGCGC 59.118 61.111 0.00 0.00 0.00 6.53
398 399 3.046497 GCGTGGTGTATTTGGGGCG 62.046 63.158 0.00 0.00 0.00 6.13
399 400 2.882132 GCGTGGTGTATTTGGGGC 59.118 61.111 0.00 0.00 0.00 5.80
400 401 1.366111 CTCGCGTGGTGTATTTGGGG 61.366 60.000 5.77 0.00 0.00 4.96
401 402 0.390603 TCTCGCGTGGTGTATTTGGG 60.391 55.000 5.77 0.00 0.00 4.12
402 403 1.651987 ATCTCGCGTGGTGTATTTGG 58.348 50.000 5.77 0.00 0.00 3.28
403 404 2.218759 GCTATCTCGCGTGGTGTATTTG 59.781 50.000 5.77 0.00 0.00 2.32
404 405 2.470821 GCTATCTCGCGTGGTGTATTT 58.529 47.619 5.77 0.00 0.00 1.40
405 406 2.135664 GCTATCTCGCGTGGTGTATT 57.864 50.000 5.77 0.00 0.00 1.89
406 407 3.867723 GCTATCTCGCGTGGTGTAT 57.132 52.632 5.77 0.00 0.00 2.29
415 416 0.729816 GGTCGGATTCGCTATCTCGC 60.730 60.000 0.00 0.00 36.13 5.03
416 417 0.452950 CGGTCGGATTCGCTATCTCG 60.453 60.000 0.00 0.00 36.13 4.04
417 418 3.386379 CGGTCGGATTCGCTATCTC 57.614 57.895 0.00 0.00 36.13 2.75
434 435 2.964438 TATAAGGAGTTGGGCGCGCG 62.964 60.000 28.44 28.44 0.00 6.86
435 436 1.227438 TATAAGGAGTTGGGCGCGC 60.227 57.895 25.94 25.94 0.00 6.86
436 437 0.878961 GGTATAAGGAGTTGGGCGCG 60.879 60.000 0.00 0.00 0.00 6.86
437 438 0.878961 CGGTATAAGGAGTTGGGCGC 60.879 60.000 0.00 0.00 0.00 6.53
438 439 0.878961 GCGGTATAAGGAGTTGGGCG 60.879 60.000 0.00 0.00 0.00 6.13
439 440 0.878961 CGCGGTATAAGGAGTTGGGC 60.879 60.000 0.00 0.00 0.00 5.36
440 441 0.462789 ACGCGGTATAAGGAGTTGGG 59.537 55.000 12.47 0.00 0.00 4.12
441 442 1.567504 CACGCGGTATAAGGAGTTGG 58.432 55.000 12.47 0.00 0.00 3.77
442 443 0.928229 GCACGCGGTATAAGGAGTTG 59.072 55.000 12.47 0.00 0.00 3.16
443 444 0.526954 CGCACGCGGTATAAGGAGTT 60.527 55.000 12.47 0.00 35.56 3.01
444 445 1.065273 CGCACGCGGTATAAGGAGT 59.935 57.895 12.47 0.00 35.56 3.85
445 446 2.300787 GCGCACGCGGTATAAGGAG 61.301 63.158 12.47 0.00 40.19 3.69
446 447 2.278989 GCGCACGCGGTATAAGGA 60.279 61.111 12.47 0.00 40.19 3.36
502 503 4.500568 GGTCAGTTTAGCGCGCGC 62.501 66.667 45.10 45.10 42.33 6.86
503 504 2.165362 TTTGGTCAGTTTAGCGCGCG 62.165 55.000 28.44 28.44 0.00 6.86
504 505 0.168128 ATTTGGTCAGTTTAGCGCGC 59.832 50.000 26.66 26.66 0.00 6.86
505 506 2.611974 AATTTGGTCAGTTTAGCGCG 57.388 45.000 0.00 0.00 0.00 6.86
506 507 2.408368 GCAAATTTGGTCAGTTTAGCGC 59.592 45.455 19.47 0.00 0.00 5.92
507 508 2.656422 CGCAAATTTGGTCAGTTTAGCG 59.344 45.455 19.47 8.81 35.42 4.26
508 509 2.986479 CCGCAAATTTGGTCAGTTTAGC 59.014 45.455 19.47 0.33 0.00 3.09
509 510 2.986479 GCCGCAAATTTGGTCAGTTTAG 59.014 45.455 19.47 0.00 0.00 1.85
510 511 2.605823 CGCCGCAAATTTGGTCAGTTTA 60.606 45.455 19.47 0.00 0.00 2.01
511 512 1.864565 GCCGCAAATTTGGTCAGTTT 58.135 45.000 19.47 0.00 0.00 2.66
512 513 0.318614 CGCCGCAAATTTGGTCAGTT 60.319 50.000 19.47 0.00 0.00 3.16
513 514 1.285641 CGCCGCAAATTTGGTCAGT 59.714 52.632 19.47 0.00 0.00 3.41
514 515 2.088178 GCGCCGCAAATTTGGTCAG 61.088 57.895 19.47 0.00 0.00 3.51
515 516 2.049618 GCGCCGCAAATTTGGTCA 60.050 55.556 19.47 0.00 0.00 4.02
516 517 3.171911 CGCGCCGCAAATTTGGTC 61.172 61.111 19.47 3.20 0.00 4.02
517 518 4.715892 CCGCGCCGCAAATTTGGT 62.716 61.111 19.47 0.00 0.00 3.67
537 538 2.618241 TCCAACAGCTGTGCTAAACAAG 59.382 45.455 22.49 1.79 38.67 3.16
538 539 2.618241 CTCCAACAGCTGTGCTAAACAA 59.382 45.455 22.49 0.00 38.67 2.83
539 540 2.158827 TCTCCAACAGCTGTGCTAAACA 60.159 45.455 22.49 0.00 36.40 2.83
540 541 2.494059 TCTCCAACAGCTGTGCTAAAC 58.506 47.619 22.49 0.00 36.40 2.01
541 542 2.928801 TCTCCAACAGCTGTGCTAAA 57.071 45.000 22.49 3.62 36.40 1.85
542 543 2.703416 CATCTCCAACAGCTGTGCTAA 58.297 47.619 22.49 5.89 36.40 3.09
543 544 1.676916 GCATCTCCAACAGCTGTGCTA 60.677 52.381 22.49 7.62 36.40 3.49
544 545 0.959372 GCATCTCCAACAGCTGTGCT 60.959 55.000 22.49 1.76 40.77 4.40
545 546 0.959372 AGCATCTCCAACAGCTGTGC 60.959 55.000 22.49 17.30 35.72 4.57
546 547 1.085091 GAGCATCTCCAACAGCTGTG 58.915 55.000 22.49 14.24 37.48 3.66
547 548 3.547567 GAGCATCTCCAACAGCTGT 57.452 52.632 15.25 15.25 37.48 4.40
556 557 7.574967 GAGTTGCTACTCTATTAGAGCATCTCC 60.575 44.444 19.33 5.54 44.73 3.71
557 558 7.040755 TGAGTTGCTACTCTATTAGAGCATCTC 60.041 40.741 25.17 22.55 46.96 2.75
558 559 7.214467 GAGTTGCTACTCTATTAGAGCATCT 57.786 40.000 19.33 15.38 46.12 2.90
669 670 0.036294 GAGTGGCAGGGTTGGTAGAC 60.036 60.000 0.00 0.00 0.00 2.59
683 684 6.206634 TGGCAAACTTTTGTAAGATAGAGTGG 59.793 38.462 3.74 0.00 40.24 4.00
834 836 3.806507 GCAAGCTGGGAGAGAATATGAGG 60.807 52.174 0.00 0.00 0.00 3.86
931 933 3.018598 GAATGAGATTCCTGCGATCGA 57.981 47.619 21.57 3.01 33.17 3.59
993 995 1.434513 TTGGTCCCTCCATTGCCACT 61.435 55.000 0.00 0.00 46.60 4.00
1039 1041 1.507141 GAACAACACGCCACCAGGAG 61.507 60.000 0.00 0.00 41.02 3.69
1057 1059 2.661399 GACAGCCAGCTGAGCAGA 59.339 61.111 25.66 0.00 46.30 4.26
1058 1060 2.814341 CGACAGCCAGCTGAGCAG 60.814 66.667 25.66 19.17 46.30 4.24
1619 1631 1.343465 ACGAAGAGTTCACCGGAATGT 59.657 47.619 9.46 0.00 35.05 2.71
1736 1757 8.967552 AACGAATTACTAGACAGAGTTACAAG 57.032 34.615 0.00 0.00 0.00 3.16
1826 1847 9.609346 GTAGATGCTTTAAAGGGACTAATTACA 57.391 33.333 16.78 2.75 38.49 2.41
1843 1864 0.905357 AAGTCCGGCTGTAGATGCTT 59.095 50.000 0.00 0.00 0.00 3.91
1874 1895 4.388499 GCGAGGGCGTTTGAGGGA 62.388 66.667 0.00 0.00 40.36 4.20
1895 1916 0.818040 AAAGTTGGTCAGTGTCCGCC 60.818 55.000 1.86 0.00 0.00 6.13
1905 1926 5.179368 TCGATTGTGAGATTGAAAGTTGGTC 59.821 40.000 0.00 0.00 0.00 4.02
1909 1930 6.618287 TGTTCGATTGTGAGATTGAAAGTT 57.382 33.333 0.00 0.00 32.62 2.66
1911 1932 7.069852 AGATGTTCGATTGTGAGATTGAAAG 57.930 36.000 0.00 0.00 32.62 2.62
1912 1933 6.650390 TGAGATGTTCGATTGTGAGATTGAAA 59.350 34.615 0.00 0.00 32.62 2.69
1913 1934 6.165577 TGAGATGTTCGATTGTGAGATTGAA 58.834 36.000 0.00 0.00 0.00 2.69
1914 1935 5.723295 TGAGATGTTCGATTGTGAGATTGA 58.277 37.500 0.00 0.00 0.00 2.57
1956 1989 4.987832 ACGTTGTTGCATGAGTTTGTAAA 58.012 34.783 0.00 0.00 0.00 2.01
1965 1998 3.248841 ACATCGTTTACGTTGTTGCATGA 59.751 39.130 11.90 0.00 46.30 3.07
1996 2029 5.243060 TCTGATGGTATGTTGTAGTATCGGG 59.757 44.000 0.00 0.00 0.00 5.14
1998 2031 6.971602 AGTCTGATGGTATGTTGTAGTATCG 58.028 40.000 0.00 0.00 0.00 2.92
2012 2045 6.068010 TGTCAAATTTTGGTAGTCTGATGGT 58.932 36.000 9.18 0.00 0.00 3.55
2035 2068 8.298854 TGATTTTCTTCATCACAGGTAAACATG 58.701 33.333 0.00 0.00 0.00 3.21
2052 2085 2.433239 GGCAGCCATGGATGATTTTCTT 59.567 45.455 33.58 0.00 32.62 2.52
2096 2129 7.713507 CCTATCCTATATACTCGAGAAGGACAG 59.286 44.444 21.68 18.25 36.03 3.51
2114 2147 3.803340 CATCCCCTTTAGGCCTATCCTA 58.197 50.000 14.74 0.00 45.41 2.94
2116 2149 1.004862 GCATCCCCTTTAGGCCTATCC 59.995 57.143 14.74 0.00 0.00 2.59
2147 2180 1.202879 TCTTTCCAGGCCATCGTGTTT 60.203 47.619 5.01 0.00 0.00 2.83
2187 2226 6.150318 CACTATGCAGTTACTTATACGAGGG 58.850 44.000 0.00 0.00 30.46 4.30
2188 2227 5.629849 GCACTATGCAGTTACTTATACGAGG 59.370 44.000 0.00 0.00 44.26 4.63
2189 2228 6.677027 GCACTATGCAGTTACTTATACGAG 57.323 41.667 0.00 0.00 44.26 4.18
2229 2268 4.371624 TGTCCCTATTCATTATGCAGGG 57.628 45.455 15.69 15.69 46.31 4.45
2231 2270 4.703575 CCCATGTCCCTATTCATTATGCAG 59.296 45.833 0.00 0.00 0.00 4.41
2289 2328 1.048601 GGGTGAGAGTGTGGTCAAGA 58.951 55.000 0.00 0.00 0.00 3.02
2291 2330 0.399949 AGGGGTGAGAGTGTGGTCAA 60.400 55.000 0.00 0.00 0.00 3.18
2305 2344 9.839185 TTTATAAAGATAGCATAGACTAGGGGT 57.161 33.333 0.00 0.00 0.00 4.95
2338 2377 6.748333 TTAGAAGAGCCTTGATTTCACATG 57.252 37.500 0.00 0.00 0.00 3.21
2339 2378 7.765695 TTTTAGAAGAGCCTTGATTTCACAT 57.234 32.000 0.00 0.00 0.00 3.21
2378 2417 7.284944 TGGGTTTGAAGGAGTTTTAACGAAATA 59.715 33.333 0.00 0.00 0.00 1.40
2478 2517 7.501844 GGCATAACTATTGTCCTCTAAACTCT 58.498 38.462 0.00 0.00 0.00 3.24
2508 2547 6.043590 CCTTACCGGGGTTTATAGGAAAGTAT 59.956 42.308 6.32 0.00 0.00 2.12
2509 2548 5.366477 CCTTACCGGGGTTTATAGGAAAGTA 59.634 44.000 6.32 0.00 0.00 2.24
2510 2549 4.164796 CCTTACCGGGGTTTATAGGAAAGT 59.835 45.833 6.32 0.00 0.00 2.66
2511 2550 4.711399 CCTTACCGGGGTTTATAGGAAAG 58.289 47.826 6.32 0.00 0.00 2.62
2512 2551 4.776435 CCTTACCGGGGTTTATAGGAAA 57.224 45.455 6.32 0.00 0.00 3.13
2525 2564 6.647229 AGTATTTTCTAGTTTCCCTTACCGG 58.353 40.000 0.00 0.00 0.00 5.28
2526 2565 7.325694 TGAGTATTTTCTAGTTTCCCTTACCG 58.674 38.462 0.00 0.00 0.00 4.02
2527 2566 9.110502 CATGAGTATTTTCTAGTTTCCCTTACC 57.889 37.037 0.00 0.00 0.00 2.85
2528 2567 9.668497 ACATGAGTATTTTCTAGTTTCCCTTAC 57.332 33.333 0.00 0.00 0.00 2.34
2530 2569 9.014297 CAACATGAGTATTTTCTAGTTTCCCTT 57.986 33.333 0.00 0.00 0.00 3.95
2531 2570 8.383175 TCAACATGAGTATTTTCTAGTTTCCCT 58.617 33.333 0.00 0.00 0.00 4.20
2532 2571 8.561738 TCAACATGAGTATTTTCTAGTTTCCC 57.438 34.615 0.00 0.00 0.00 3.97
2559 2598 9.729281 TCTCGTCAAGGTTTTTATTTAGGTAAT 57.271 29.630 0.00 0.00 0.00 1.89
2560 2599 9.558396 TTCTCGTCAAGGTTTTTATTTAGGTAA 57.442 29.630 0.00 0.00 0.00 2.85
2561 2600 8.992073 GTTCTCGTCAAGGTTTTTATTTAGGTA 58.008 33.333 0.00 0.00 0.00 3.08
2562 2601 7.499895 TGTTCTCGTCAAGGTTTTTATTTAGGT 59.500 33.333 0.00 0.00 0.00 3.08
2563 2602 7.867752 TGTTCTCGTCAAGGTTTTTATTTAGG 58.132 34.615 0.00 0.00 0.00 2.69
2564 2603 9.329913 CATGTTCTCGTCAAGGTTTTTATTTAG 57.670 33.333 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.