>input_sequence_74911
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-----------------------------------------ATGGAGGGACCAAGAGCGGTGGCGATGGTGGCGGTGATC
CTCCTGGTGGCGTGTTGTTCTGCTCAGCTGGCTGTCGCCGGAGGTGATCAGGGCCAGCCGGCGGCGGGAGGCCCGGAGGC
GAGCCTGCTGTGCATCAGCGAGTGCGGGACGTGCCCCACGGTGTGCACGTCGCCGCCGCCAGCTCCTCCCTCGCCGTCAT
CGTCATCGTCAACACCGTCGCCTCCCTCGCCGTCATCGTCATCGTCAACACCGTCGCCTCCCTCGCCGTCGACGTCGATC
CTCCCGCTGTCCACGCCCCCGCCGCCGTATCTGACTCTGCTGCTCCCGCCGCCCCCATCGTCATCGTCGACGGAGCCGCC
CCCGTCCACGCCGTCGCCGACTCCACCGAAGAGCAGCGGCGGGTCGTCATCGTCTTCCTCTCCCTCGGCTCCGTCCTCGC
ACTTCTCGTCGCCGCCGTCCCCGCCGTCGTCCTCGGCGAACCCGTACTACTACTTCTACCTCTCGGGGGGCAGCAGGAGC
CGCGGCGCGTCGAGCGTCTACACCGTCGTCATCGTCGCGCTGCTCCTGCCCGCCGTCACCTTTTGGAGGTGA--------
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>chr4D_1_TraesCS4D01G112600
CTCGAACTCATGGTCTTCGAAATGCATGTCATTGGTTTGAGACCAATGCGAATTGTTGGAGCCAACACCCATCGTTGACA
TGTATGCATCATCATTGAGACTACAAAGTTTTTTGAACAATGCAAATAAGCTATCTATATGTGAATGCATTGAAAAAATA
ACAAAAAAAATGAAAAGTTGGAATTTTTTACCTTGGGGGCATTTCGTCGAACATGTTGTACGCGTCGGCCGCCGGCTCAA
CGAGTGAGCTCGCCGGCGCTTCGGTAGCCGCCGCGCCCGTCGCACGCCTTGCAAGCTTCTTCCTCCTCGCCTTCGAGGTG
CCGGCGCGCGTGGGGCGTAGGAGGCGGAGAAGAGAGAGTGCAGCGCGAGCGCTCGAGTGTGCCGCGCCCAGAAGCGGGCG
CCCCAAATACACCACGCGAGATAGCGAATCCGACCGCGCGCCCAACTCCTTATACCGCGTGCGCGGTTATTGCGCGCCCG
CTGGAGCCACCCGCCGGGTTGCGCGCGCGCTAAACTGACCAAATTTGCGGCGCGGCGCTTGTTTAGCACAGCTGTTGGAG
ATGCTCTAATAGAGTAGCAACTCACCCGAGTTCTTTCTCCAACCAACCAGGCTTCTGCAGATGCTTTACCTGCCTTGCAC
TCTGCAGACCATTACACATGCACTTCTCAGTCTACCAACCCTGCCACTC-TATCTTACAAAAGTTTGCCAACACTTTTGA
GCTCCATGAGACAAGGTATCAGTCACAAACATATGTTACGGTGGCCGATTTCTTGAGAAGGACCAATTGTTTGGTGCCAA
TCCAGGAGAGGAGCATCTTCTCTTTACACCCTGCTCCTCATATTCTCTCCCAGCTTGCACCTGAAGTTTCGCACATCTTC
TCCTGCACTGCACTTCTTGGCTTATAAACCGGAAGCTCCGGCCCACAGGCAGTCGATCGCAGGAATCTCATTCCCCCACC
GGCACCAAGCAAGCTCATGAGAGCAGTCTGTCAGAGTGGCAATGGAGGGACCAAGAGCGGTGGCGATGGTGGCGGTGATC
CTCCTGGTGGCGTGTTGTTCTGCTCAGCTGGCTGTCGCCGGAGGTGATCAGGGCCAGCCGGCGGCGGGAGGCCCGGAGGC
GAGCCTGCTGTGCATCAGCGAGTGCGGGACGTGCCCCACGGTGTGCACGTCGCCGCCGCCAGCTCCTCCCTCGCCGTCAT
CGTCATCGTCAACACCGTCGCCTCCCTCGCCGTCATCGTCATCGTCAACACCGTCGCCTCCCTCGCCGTCGACGTCGATC
CTCCCGCTGTCCACGCCCCCGCCGCCGTATCTGACTCTGCTGCTCCCGCCGCCCCCATCGTCATCGTCGACGGAGCCGCC
CCCGTCCACGCCGTCGCCGACTCCACCGAAGAGCAGCGGCGGGTCGTCATCGTCTTCCTCTCCCTCGGCTCCGTCCTCGC
ACTTCTCGTCGCCGCCGTCCCCGCCGTCGTCCTCGGCGAACCCGTACTACTACTTCTACCTCTCGGGGGGCAGCAGGAGC
CGCGGCGCGTCGAGCGTCTACACCGTCGTCATCGTCGCGCTGCTCCTGCCCGCCGTCACCTTTTGGAGGTGAGGTGTTGG
GCTC--------CGTCGCGTCGCC--GTGCACATTCCGGTGAACTCTTCGTGTGTTTATAGTAC----AGTACTGTCACT
TCCTTTCCCTTTCCCT----CGTCAGATTCAGAAGCTACCAGCACTTCCACTGTCTAGTAGTAATTCC-TTTTTTTCTTG
TAACTCTGTCTAGTAATTCGTTCCTGGTGTAATGGTACTGCTGATTATTAACTATTACAAGTGCATACAGTACTGTTTAT
TTTGGTTGTAATTAGTCCCTTTAAAGCATCTACAGCCGGACTTTGGAAATCCGATCCCTCAAACGCCCTCGCGTCGGCGG
ACACTGACCAACTTT------------CAATCTCACAATCGAACATCTCAATTAGCATATCTCAAATTTTTACAAACTCA
TGCAACAACGTAAACGATGTTACATCGTCCCGATACTACAACATACCATCAGACTACCAAAATTTGACATGTTTACCTGT
GATGAAGAAAATCATCCATGGCTGCCCCTGTCCTTCCCGGCGCCCTGACTGTCCTTCTCGAGTATATAGGATAGGCCTAA
AGGGGATGCAGCATCATACAAACACGATGGC------CTGGAAAGAACCGAGTGAATCGTTGCATCCCTCGTATAAGTAA
CTGCATAGTGCATTCGCAAAAAAAAAACCCTGCATAATGAATAGGGACATGGGAGATTATAATTAATTAACACATGGCTT
AATTAAGTCTTGACCACACTCTCACCCCTAGTCTATGCTATCTTTATAAACATCATCATGTGAAATCAAGGCTCTTCTAA
AAAACTTGTGGTGCGATATTTCGTTAAAACTCCTTCAAACCCAATAAAAAAATAAGAAGAAAATGATAGAACATACAATG
GCTATTGTCTCTTTTAACTCAATATGAGAAACCCATAGAGTTTAGAGGACAATAGTTATGCCGTATATACTTTCCTATAA
ACCCCGGTAAGGGAAACTAGAAAATACTCATGTTGATATTACCTAAATAAAAACCTTGACGAGAACATG
>chr4B_567
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------TAATAGAGTAGCAACTCACCCGAGTTCTTTCTCCAACCAACCAGGCTTCTGCAGATGCTTTACCTGCCTTGCAC
TCTGCAAACCATTACACATGCACTTCTCAATCTACCAACCCTGGCACTCTTATCTTACAAAAGTTTCCTAGCACTTTTGA
GCTCCATGAGACAAGGTATCAGTCACAAACATATATTACGGTGGCCGATTTCTTGAGACGGATCACTTGTTTGGTGCCAA
TCCAGGAGAGGAGCATCTTCTCTTTACACCCTGCTTCTCATATTCTCTCCCAGCTTGCACCTGAAGTTTCGCACATCTTC
TCCTGCACTGCACTTCTTGGCTTATAAATCGGCAGCTCCGGCCCACAGGCAGCCGATCGCAGGAATCTCATTCCCCCACC
GGCACCAAGCAAGCTCATGAGAGCAGTCTGTCAGGGTGGCAATGGAGGGACCAAGAGCGGTGGCGATGGTGGCGGTGATC
GTCCTGGTGGCGTGTTGTGGTGCCCAGCTGGCTGTCGCCGGAGGTGATCAGGGCCAGCCGGCGGCGGGAGGGCCGGAGGC
GAGCCTGCTGTGCATCAGCGAGTGCGGGACGTGCCCCACGGTGTGCACGTCGCCGCCGCCAGCTCCTCCTTCCCCGTCAT
CGTCATCGTCAACACCGT---CTCCCTCGCCGTCATTGTCACCGTCAACACCGTCGCCTCCCTCGCCATCGACGTCGATC
CTCCCGCTGTCCACGCCCCCACCGCCATATCTGACTCTGCTGCTCCCGCCGCCCCCGTCGTCATCGTCGACTGAGCCGCC
CCCGTCCACGCCGTCGCCGACTCCACCGAAGAGCAGCGGCGGGTCTTCGTCGTCTTCCTCTCCCTCGGCTCCGTCCTCGC
ACGTCTCGTCGCCGCCGTCCCCGCCGTCGTCCTCGGCGAACCCGTACTACTACTTCTACCTCTCGGGGGGCAGCAGGAGC
CGCGGCGCGTCAAGCGTCTACGCCGTCGTCATCGTCGCGCTGCTCCTGCCCGCCGTCACCTTTTGGAGGTGAGGTGTTGG
GCTC--------CGTTGCGTCGCC--GTGCCCATTCCGGTGAACTCTTCGTGTGTTTATAGTAC----ACTACTGTCACT
TCCTTTCCCTTTCCCT----CGTCAGATTCAGAAGCTACCAGCACTTCCACTGTCTAGTA---ATTCCTTTTTTTTGTTG
TAACTCTGTCTAGTAATTCGTTCCTGGTGTAATGGTACTGCTGATTATTAACTATTACAAGTGCATACAGTACTGTTTAT
TTTGGTCCTAATTAGTCCCTTTAGAGCATCTACAGCCGGACTTTGGAAATCCGACCCCTCAAACGCTCTCGCGTCCGCGG
ACACTAACCGATCAAGCCTCAAAACTCCAATCTCACAATCGAACACCTCAATTAGCATATCTCAAATTCTTACAAACCCA
TGCAACAACGTAAACGATGCTACATTGTTCGGATACTACAACATGCCATCAGACTACCAAAATTTGATATGTTTGACTAT
GATGGAGAAAATCATCCATGGCTGCCCCTGCCCTTCCCGGCGCCCTGAATGTCCTTCTCGAGTATAGATGATAGGCCTAA
AGGGGATGCAGCATCATACGAACACGATGGCCTGGAACTGGAATGAACCGAGTGAATCGTTGCAT---------------
------AGTGCATTCGCAAAAAAAAAAACATGCATAATGAATAGGGACAGGGGAGATTATAATTAATTAACACATGGCTT
AATTAAGCCATGACCACACTCTCGCCCCTAGTCTATGCTATCTTTATAAACATCATTGTGCGAAATCAAGGCTCCTCTAA
AAACTTTGTGGTGCGACATTTCGTTAAAACTCCTTCAAACTCAATAAGAAAATAAGAAGAAAATGATAGAACATACAATG
GCTATTGTCTCTTTTAACTTAATATGAGAAACCCATGGAGTTTAGAGGACAATAGTTATGCCGTAT--------------
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>chr4A_567
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------TAATAGAGTAGCAACTCACCCGACTTCTTTCTCCAACCGACCAGGCTTCTGCAGATGCTTTACCTGCCTTGCAC
TCTGCAGATCATTACACATGCACTTCTCAATCTACTATCCCTGTCACTC-TATCTTACAAAAGTTTGCCAACACTTTTGA
GCTCCATGAGACAAGGTATCAGTCACAAACATATGTTACGGTGGCCGATTTCTTGAGACGCATCAATCGTTTGGTGCCAA
TCCTGGAGAGGAGCATCTTCTCTTTACACCCTGCTTCTCATATTCTCTCCCAGCTTGCACCTGAAGTTTCACACATCTTC
TCCTGCACTGCACTTCTTGGCTTATAAACCGGCAGCTCCGGCCCACAAGCAGCCGATCGCAGGAATCTCATTCCCCCACC
TGCGCCAAGCAAGCTCATGAGAGCAGCCTGTCAAGGTGGCAATGGAGGGACCAAGAGCGGTGGCGATGGTGGCGGTGATC
GTCCTGGTGGCGTGTTGTGGTGCTCAGCTGGCTGTCGCCGGAGGTGACCAGGGCCAGCCGGCGGCGGGAGGGCCGGAGGC
GAGTCTGCTGTGCATCAGCGAGTGCGGGACGTGCCCCACGGTGTGCACGTCGCCGCCGCCAGCTCCTCCCTCGCCGTCAT
CATCATCATCTACACCGTCGCCTCCCTCGCCGTCATCGTCATCATCAACACCGTCGCCTCCCTCGCCATCGACGTCGATC
CTCCCGCTGCCCACGCCCCCGCCGCCGTATCTGACTCTGCTGCTCCCGCCGCCCCCGTCGTCATCGTCGACGGAGCTGCC
CCCGTCCACGCCGTCGCCGACTCCACCGAAGAGCAGCGGCGGGTCGTCATCGTCTTCGTCTTCCTCGGCTCCGTCCTCGC
ACTTCTCGTCGCCGCCGTCCCCGCCGTCGTCCTCGGCGAACCCGTACTACTACTTCTACCTCTCCGGGGGCAGCAGGAGC
CGCGGCGCGTCGAGCGTCTACGCCGTCGTCATCCTCGCGCTGCTCCTGCCCGCCGTCACCTTTTGGAGGTGAGATGAGGT
GTTGGACGTTGTCGTTGCGTCGCCGTGTGCCCATTCTGGTGAACTCCTCGTGTGTTTATAGTACTACAAGTACTGTCACT
TCTTTTCCCTTCCCGGCCCCCGTCAGATTCAGAAGCTAGCAGCACTTCCACTGTCTAGTAGTAATTCGTTTTTGTTGTTG
TAACCCTGTCTAGTAATTCGTCCCTTGTGTAATGTTACTGCTGATTATTAACTATTACAAGTGCACACACTACTGTTTAT
TTTGGTCGTAACTAGT----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
-----------------------------S-------------S------------------------------------
----------------------------------------------------------S---S-----------------
-----------------------------------S--------------------------------------------
--------------------------------S-------------------S---------------------------
----------------------------------S---------------------------------------------
S-----------------SS---------------------------------------------------S--------
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-------------------------------------------------------------------S------------
--------------------------------------------------------S-----------------------
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---------------------S----------------------------------------------------------
---------------S--------------S-------------------------------------------------
----------------------------------------------------------------------------S---
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------S----------------S------------------------------S-----------S--------S----
-----S---S-SSSS------------------------------S----------------------S--------S--
-------------------S-----S--S-S-------------S----------------------S------SS--S-
----S-------------------------S-----------------S-----------------S-S-----------
-------------------S-----------------------S---------------------SSSSSSSSSSSSSSS
SSSSSS---------------------S-S-------------------S------------------------------
-------S-S-------------S--------------------------------SS--S-------------S-----
---SS-----------S-----------------------S------S--------------------------------
-------------------S----------------S-----------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_208
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----------------------------TACCTTGGGGGCATTTCGTC--------------------------------
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>reverse_1916
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---------------------------------------------------------------------------GGCGG
ACACTGACCAACTTT-----------------------------------------------------------------
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