Multiple sequence alignment - TraesCS4D01G091700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G091700 chr4D 100.000 4975 0 0 1 4975 66588321 66583347 0.000000e+00 9188.0
1 TraesCS4D01G091700 chr4D 91.958 286 20 3 4403 4687 349816318 349816035 1.000000e-106 398.0
2 TraesCS4D01G091700 chr4B 93.773 2425 78 29 1788 4172 97248183 97245792 0.000000e+00 3574.0
3 TraesCS4D01G091700 chr4B 93.448 931 44 10 819 1745 97249202 97248285 0.000000e+00 1365.0
4 TraesCS4D01G091700 chr4B 91.728 544 38 5 1 541 97251752 97251213 0.000000e+00 749.0
5 TraesCS4D01G091700 chr4B 91.538 260 19 3 535 793 97251172 97250915 6.130000e-94 355.0
6 TraesCS4D01G091700 chr4B 94.286 105 6 0 4189 4293 97245807 97245703 1.430000e-35 161.0
7 TraesCS4D01G091700 chr4B 87.059 85 4 2 4312 4396 97139549 97139472 6.860000e-14 89.8
8 TraesCS4D01G091700 chr4A 96.619 1390 21 9 2798 4172 515647518 515646140 0.000000e+00 2283.0
9 TraesCS4D01G091700 chr4A 89.395 1273 51 33 538 1788 515649877 515648667 0.000000e+00 1526.0
10 TraesCS4D01G091700 chr4A 93.261 1009 32 6 1788 2761 515648625 515647618 0.000000e+00 1454.0
11 TraesCS4D01G091700 chr4A 86.607 224 27 3 280 500 515650219 515649996 1.380000e-60 244.0
12 TraesCS4D01G091700 chr4A 82.474 291 30 11 23 297 515650519 515650234 8.330000e-58 235.0
13 TraesCS4D01G091700 chr4A 94.737 114 5 1 4187 4299 515646157 515646044 5.120000e-40 176.0
14 TraesCS4D01G091700 chr4A 80.791 177 21 4 4677 4852 515645894 515645730 5.230000e-25 126.0
15 TraesCS4D01G091700 chrUn 94.161 274 15 1 4399 4672 108799501 108799229 2.770000e-112 416.0
16 TraesCS4D01G091700 chr2D 94.737 266 14 0 4403 4668 204112684 204112949 9.960000e-112 414.0
17 TraesCS4D01G091700 chr6D 94.737 266 13 1 4402 4667 388990882 388990618 3.580000e-111 412.0
18 TraesCS4D01G091700 chr6D 94.052 269 15 1 4398 4666 256102155 256101888 1.670000e-109 407.0
19 TraesCS4D01G091700 chr6A 94.403 268 14 1 4402 4669 76520677 76520943 1.290000e-110 411.0
20 TraesCS4D01G091700 chr5B 94.677 263 14 0 4402 4664 317310044 317310306 4.640000e-110 409.0
21 TraesCS4D01G091700 chr5B 81.590 478 88 0 3146 3623 541946033 541946510 3.610000e-106 396.0
22 TraesCS4D01G091700 chr3D 94.382 267 14 1 4398 4664 83428800 83428535 4.640000e-110 409.0
23 TraesCS4D01G091700 chr3D 94.030 268 16 0 4402 4669 586579196 586578929 1.670000e-109 407.0
24 TraesCS4D01G091700 chr5D 80.585 479 91 2 3146 3623 444898998 444899475 7.870000e-98 368.0
25 TraesCS4D01G091700 chr5A 79.541 479 96 2 3146 3623 561972183 561972660 1.720000e-89 340.0
26 TraesCS4D01G091700 chr5A 95.455 44 0 2 68 110 319224017 319224059 8.940000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G091700 chr4D 66583347 66588321 4974 True 9188.000000 9188 100.000000 1 4975 1 chr4D.!!$R1 4974
1 TraesCS4D01G091700 chr4B 97245703 97251752 6049 True 1240.800000 3574 92.954600 1 4293 5 chr4B.!!$R2 4292
2 TraesCS4D01G091700 chr4A 515645730 515650519 4789 True 863.428571 2283 89.126286 23 4852 7 chr4A.!!$R1 4829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 437 0.321671 AGCTGACAACGTGGCTATGT 59.678 50.0 0.0 0.0 32.94 2.29 F
1509 3345 0.041238 ATCCCTCCGTCCTTCTCACA 59.959 55.0 0.0 0.0 0.00 3.58 F
2790 4858 0.036388 TCGTTGTCCCATCTTGGCTC 60.036 55.0 0.0 0.0 35.79 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 3784 0.036105 TGGTGCTCACAGCTGGTATG 60.036 55.0 19.93 7.62 44.77 2.39 R
3128 5196 0.032403 GCAATGCAAGCAAGACCACA 59.968 50.0 0.00 0.00 0.00 4.17 R
4354 6466 0.611896 ATTTGGTTTGAGGGAGCCGG 60.612 55.0 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 252 2.325082 CGGCACACACCCTTACAGC 61.325 63.158 0.00 0.00 0.00 4.40
259 276 4.308458 CGAGCGACCCCACAACCA 62.308 66.667 0.00 0.00 0.00 3.67
277 294 1.747355 CCATTGATGCACAAGGAGGTC 59.253 52.381 12.95 0.00 41.97 3.85
299 349 7.232534 AGGTCCAAATCTAGAGAGCTTAGTATG 59.767 40.741 5.79 0.00 33.49 2.39
384 437 0.321671 AGCTGACAACGTGGCTATGT 59.678 50.000 0.00 0.00 32.94 2.29
404 457 2.758423 GTGTTTTGGTTGGTTCTCTGGT 59.242 45.455 0.00 0.00 0.00 4.00
407 460 3.374042 TTTGGTTGGTTCTCTGGTTCA 57.626 42.857 0.00 0.00 0.00 3.18
413 466 4.200092 GTTGGTTCTCTGGTTCAAGTTCT 58.800 43.478 0.00 0.00 0.00 3.01
419 472 3.056536 TCTCTGGTTCAAGTTCTGATCGG 60.057 47.826 0.00 0.00 32.78 4.18
430 483 3.751698 AGTTCTGATCGGTAAAAGTTGGC 59.248 43.478 0.42 0.00 0.00 4.52
452 505 2.125512 CTTGGCTTCGTCGGGAGG 60.126 66.667 0.00 0.00 0.00 4.30
480 533 0.878523 TTTGTGTTCCCGACTCTGCG 60.879 55.000 0.00 0.00 0.00 5.18
505 592 2.571653 CTGGATCTGGGGTGTTCTACAA 59.428 50.000 0.00 0.00 0.00 2.41
514 601 2.615747 GGGTGTTCTACAAGCCCTCTTC 60.616 54.545 0.00 0.00 36.49 2.87
541 628 0.873054 TATTCTCCGGAGCGACGATC 59.127 55.000 27.39 4.11 35.47 3.69
542 629 0.820074 ATTCTCCGGAGCGACGATCT 60.820 55.000 27.39 1.61 35.47 2.75
543 630 1.030488 TTCTCCGGAGCGACGATCTT 61.030 55.000 27.39 0.00 35.47 2.40
544 631 1.030488 TCTCCGGAGCGACGATCTTT 61.030 55.000 27.39 0.00 35.47 2.52
554 688 1.710013 GACGATCTTTTGACCGCTGA 58.290 50.000 0.00 0.00 39.58 4.26
560 694 4.747108 CGATCTTTTGACCGCTGATTCTAT 59.253 41.667 0.00 0.00 0.00 1.98
561 695 5.332883 CGATCTTTTGACCGCTGATTCTATG 60.333 44.000 0.00 0.00 0.00 2.23
563 697 5.487433 TCTTTTGACCGCTGATTCTATGAA 58.513 37.500 0.00 0.00 0.00 2.57
586 720 6.799926 ACTTTTGCATTTCAACAAGTTTGT 57.200 29.167 0.00 0.00 44.72 2.83
612 746 0.904865 AAGACGGAGACCCTGATGCA 60.905 55.000 0.00 0.00 0.00 3.96
678 812 7.326789 GTGCCAAATTCACATATAATGGATTCG 59.673 37.037 0.00 0.00 34.73 3.34
770 905 1.227089 CCGGATTGGAGCTGTCTCG 60.227 63.158 0.00 0.00 42.00 4.04
793 928 6.429692 TCGACATTAGAAATTTGCTTGGAGAA 59.570 34.615 0.00 0.00 0.00 2.87
794 929 7.121168 TCGACATTAGAAATTTGCTTGGAGAAT 59.879 33.333 0.00 0.00 0.00 2.40
796 931 7.325694 ACATTAGAAATTTGCTTGGAGAATGG 58.674 34.615 0.00 0.00 0.00 3.16
801 936 4.581309 ATTTGCTTGGAGAATGGAGAGA 57.419 40.909 0.00 0.00 0.00 3.10
802 937 3.623906 TTGCTTGGAGAATGGAGAGAG 57.376 47.619 0.00 0.00 0.00 3.20
803 938 1.209019 TGCTTGGAGAATGGAGAGAGC 59.791 52.381 0.00 0.00 0.00 4.09
804 939 1.209019 GCTTGGAGAATGGAGAGAGCA 59.791 52.381 0.00 0.00 0.00 4.26
805 940 2.742530 GCTTGGAGAATGGAGAGAGCAG 60.743 54.545 0.00 0.00 0.00 4.24
806 941 2.539432 TGGAGAATGGAGAGAGCAGA 57.461 50.000 0.00 0.00 0.00 4.26
807 942 2.386779 TGGAGAATGGAGAGAGCAGAG 58.613 52.381 0.00 0.00 0.00 3.35
808 943 1.069049 GGAGAATGGAGAGAGCAGAGC 59.931 57.143 0.00 0.00 0.00 4.09
809 944 1.755959 GAGAATGGAGAGAGCAGAGCA 59.244 52.381 0.00 0.00 0.00 4.26
810 945 1.481772 AGAATGGAGAGAGCAGAGCAC 59.518 52.381 0.00 0.00 0.00 4.40
811 946 0.540923 AATGGAGAGAGCAGAGCACC 59.459 55.000 0.00 0.00 0.00 5.01
817 2650 3.640407 GAGCAGAGCACCCACCCA 61.640 66.667 0.00 0.00 0.00 4.51
827 2660 3.996621 CCCACCCACCCCAATGCT 61.997 66.667 0.00 0.00 0.00 3.79
829 2662 2.440147 CACCCACCCCAATGCTGA 59.560 61.111 0.00 0.00 0.00 4.26
852 2685 2.452813 CGATTTGTGGCTCGGTCGG 61.453 63.158 0.00 0.00 0.00 4.79
854 2687 1.359459 GATTTGTGGCTCGGTCGGTC 61.359 60.000 0.00 0.00 0.00 4.79
923 2756 4.830765 CCCCGATCGAAGCCGCAA 62.831 66.667 18.66 0.00 35.37 4.85
1498 3331 2.429058 CATGCCTCCATCCCTCCG 59.571 66.667 0.00 0.00 0.00 4.63
1503 3339 1.383248 CCTCCATCCCTCCGTCCTT 60.383 63.158 0.00 0.00 0.00 3.36
1505 3341 0.397816 CTCCATCCCTCCGTCCTTCT 60.398 60.000 0.00 0.00 0.00 2.85
1506 3342 0.397254 TCCATCCCTCCGTCCTTCTC 60.397 60.000 0.00 0.00 0.00 2.87
1507 3343 0.687757 CCATCCCTCCGTCCTTCTCA 60.688 60.000 0.00 0.00 0.00 3.27
1508 3344 0.461961 CATCCCTCCGTCCTTCTCAC 59.538 60.000 0.00 0.00 0.00 3.51
1509 3345 0.041238 ATCCCTCCGTCCTTCTCACA 59.959 55.000 0.00 0.00 0.00 3.58
1526 3362 3.849911 TCACAATCTCTCCATCGTCAAC 58.150 45.455 0.00 0.00 0.00 3.18
1527 3363 3.258123 TCACAATCTCTCCATCGTCAACA 59.742 43.478 0.00 0.00 0.00 3.33
1528 3364 3.996363 CACAATCTCTCCATCGTCAACAA 59.004 43.478 0.00 0.00 0.00 2.83
1620 3474 7.332678 TCAGAAATGTCATTACAGTGTGATGAG 59.667 37.037 26.12 15.05 38.79 2.90
1695 3553 0.166597 ATGCAACGACAGTGCATTCG 59.833 50.000 12.26 12.26 39.94 3.34
1776 3651 6.115446 TGTATAAGCAGGAATGTTTCAGAGG 58.885 40.000 0.00 0.00 0.00 3.69
1982 3901 2.257207 TCCCTCAACTCCAAGATCGTT 58.743 47.619 0.00 0.00 0.00 3.85
2138 4066 4.165950 AGCAATAGATTCACATGGTGGGTA 59.834 41.667 0.00 0.00 33.87 3.69
2291 4235 1.222115 ACTGCAAAACGCTCGAGGAC 61.222 55.000 15.58 0.00 43.06 3.85
2369 4313 0.458669 GGGCGAGATTTGAGTACGGA 59.541 55.000 0.00 0.00 0.00 4.69
2387 4331 2.478831 GGATTGTTCGAGGATGCTCTC 58.521 52.381 12.78 1.67 0.00 3.20
2572 4570 5.809001 TCTGCAAGTTCTTATGGACAGAAT 58.191 37.500 0.00 0.00 32.86 2.40
2718 4716 4.823157 TGGATGCTCATTTTCCATGTTTG 58.177 39.130 0.00 0.00 34.65 2.93
2720 4718 5.011840 TGGATGCTCATTTTCCATGTTTGAA 59.988 36.000 0.00 0.00 34.65 2.69
2724 4722 7.804843 TGCTCATTTTCCATGTTTGAAAATT 57.195 28.000 14.70 3.29 45.43 1.82
2726 4724 9.334947 TGCTCATTTTCCATGTTTGAAAATTTA 57.665 25.926 14.70 8.33 45.43 1.40
2727 4725 9.597999 GCTCATTTTCCATGTTTGAAAATTTAC 57.402 29.630 14.70 6.92 45.43 2.01
2731 4729 8.443953 TTTTCCATGTTTGAAAATTTACCCTG 57.556 30.769 4.76 0.00 36.93 4.45
2732 4730 5.546526 TCCATGTTTGAAAATTTACCCTGC 58.453 37.500 0.00 0.00 0.00 4.85
2764 4762 6.597672 GGATATTGCCCAAATCGACATACATA 59.402 38.462 0.00 0.00 0.00 2.29
2765 4763 5.689383 ATTGCCCAAATCGACATACATAC 57.311 39.130 0.00 0.00 0.00 2.39
2766 4764 4.143986 TGCCCAAATCGACATACATACA 57.856 40.909 0.00 0.00 0.00 2.29
2767 4765 4.713553 TGCCCAAATCGACATACATACAT 58.286 39.130 0.00 0.00 0.00 2.29
2773 4841 6.845782 CCAAATCGACATACATACATTGTTCG 59.154 38.462 0.00 0.00 39.87 3.95
2778 4846 6.034150 TCGACATACATACATTGTTCGTTGTC 59.966 38.462 0.00 8.39 39.87 3.18
2790 4858 0.036388 TCGTTGTCCCATCTTGGCTC 60.036 55.000 0.00 0.00 35.79 4.70
2794 4862 2.205022 TGTCCCATCTTGGCTCTTTG 57.795 50.000 0.00 0.00 35.79 2.77
2795 4863 1.425066 TGTCCCATCTTGGCTCTTTGT 59.575 47.619 0.00 0.00 35.79 2.83
3140 5208 2.558359 GGCATTAACTGTGGTCTTGCTT 59.442 45.455 0.00 0.00 0.00 3.91
3141 5209 3.568538 GCATTAACTGTGGTCTTGCTTG 58.431 45.455 0.00 0.00 0.00 4.01
3142 5210 3.568538 CATTAACTGTGGTCTTGCTTGC 58.431 45.455 0.00 0.00 0.00 4.01
3143 5211 2.340210 TAACTGTGGTCTTGCTTGCA 57.660 45.000 0.00 0.00 0.00 4.08
3425 5493 1.738099 CCTCAACTTCCCGCAGTCG 60.738 63.158 0.00 0.00 0.00 4.18
3673 5744 4.189188 CTACGACCAGGGCGACGG 62.189 72.222 25.69 6.83 0.00 4.79
4024 6104 0.236449 GCCGAAACCACTACCGTTTG 59.764 55.000 0.00 0.00 33.65 2.93
4068 6151 3.072476 CCTCCTCTTTTGTTGGGTCACTA 59.928 47.826 0.00 0.00 0.00 2.74
4156 6240 7.698506 ACTGTACACTAGTGCTGATTTAGTA 57.301 36.000 22.90 1.44 34.34 1.82
4157 6241 8.118976 ACTGTACACTAGTGCTGATTTAGTAA 57.881 34.615 22.90 0.00 34.34 2.24
4158 6242 8.582437 ACTGTACACTAGTGCTGATTTAGTAAA 58.418 33.333 22.90 0.00 34.34 2.01
4159 6243 8.981724 TGTACACTAGTGCTGATTTAGTAAAG 57.018 34.615 22.90 0.00 0.00 1.85
4160 6244 8.582437 TGTACACTAGTGCTGATTTAGTAAAGT 58.418 33.333 22.90 0.00 0.00 2.66
4161 6245 9.420551 GTACACTAGTGCTGATTTAGTAAAGTT 57.579 33.333 22.90 0.00 0.00 2.66
4162 6246 8.311650 ACACTAGTGCTGATTTAGTAAAGTTG 57.688 34.615 22.90 0.00 0.00 3.16
4163 6247 8.148351 ACACTAGTGCTGATTTAGTAAAGTTGA 58.852 33.333 22.90 0.00 0.00 3.18
4164 6248 9.155975 CACTAGTGCTGATTTAGTAAAGTTGAT 57.844 33.333 10.54 0.00 0.00 2.57
4165 6249 9.372369 ACTAGTGCTGATTTAGTAAAGTTGATC 57.628 33.333 0.00 0.00 0.00 2.92
4166 6250 9.593134 CTAGTGCTGATTTAGTAAAGTTGATCT 57.407 33.333 1.21 0.00 0.00 2.75
4167 6251 8.854614 AGTGCTGATTTAGTAAAGTTGATCTT 57.145 30.769 1.21 0.00 38.10 2.40
4168 6252 9.944376 AGTGCTGATTTAGTAAAGTTGATCTTA 57.056 29.630 1.21 0.00 35.02 2.10
4169 6253 9.974750 GTGCTGATTTAGTAAAGTTGATCTTAC 57.025 33.333 1.21 0.00 35.02 2.34
4170 6254 9.944376 TGCTGATTTAGTAAAGTTGATCTTACT 57.056 29.630 9.34 9.34 35.02 2.24
4218 6302 6.866770 TGATCTTACTTGAGAAACACTTACCG 59.133 38.462 0.00 0.00 0.00 4.02
4243 6327 1.394618 AGTGTACTCCAGCGATCCTC 58.605 55.000 0.00 0.00 0.00 3.71
4273 6357 3.058639 GTGAAAAGCTGACCAGACATGTC 60.059 47.826 18.47 18.47 0.00 3.06
4303 6387 3.997672 GAGCATCTACGCAATCCCT 57.002 52.632 0.00 0.00 0.00 4.20
4304 6388 1.506493 GAGCATCTACGCAATCCCTG 58.494 55.000 0.00 0.00 0.00 4.45
4305 6389 0.107456 AGCATCTACGCAATCCCTGG 59.893 55.000 0.00 0.00 0.00 4.45
4306 6390 1.510480 GCATCTACGCAATCCCTGGC 61.510 60.000 0.00 0.00 0.00 4.85
4307 6391 0.886490 CATCTACGCAATCCCTGGCC 60.886 60.000 0.00 0.00 0.00 5.36
4308 6392 2.056906 ATCTACGCAATCCCTGGCCC 62.057 60.000 0.00 0.00 0.00 5.80
4310 6394 2.666596 CTACGCAATCCCTGGCCCTC 62.667 65.000 0.00 0.00 0.00 4.30
4344 6456 4.568359 CACATATCAAAAGTCCGTCTCCAG 59.432 45.833 0.00 0.00 0.00 3.86
4345 6457 4.223032 ACATATCAAAAGTCCGTCTCCAGT 59.777 41.667 0.00 0.00 0.00 4.00
4346 6458 2.814280 TCAAAAGTCCGTCTCCAGTC 57.186 50.000 0.00 0.00 0.00 3.51
4347 6459 2.317040 TCAAAAGTCCGTCTCCAGTCT 58.683 47.619 0.00 0.00 0.00 3.24
4348 6460 2.296471 TCAAAAGTCCGTCTCCAGTCTC 59.704 50.000 0.00 0.00 0.00 3.36
4349 6461 1.258676 AAAGTCCGTCTCCAGTCTCC 58.741 55.000 0.00 0.00 0.00 3.71
4350 6462 0.112606 AAGTCCGTCTCCAGTCTCCA 59.887 55.000 0.00 0.00 0.00 3.86
4351 6463 0.609681 AGTCCGTCTCCAGTCTCCAC 60.610 60.000 0.00 0.00 0.00 4.02
4352 6464 0.894184 GTCCGTCTCCAGTCTCCACA 60.894 60.000 0.00 0.00 0.00 4.17
4353 6465 0.178973 TCCGTCTCCAGTCTCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
4354 6466 0.038159 CCGTCTCCAGTCTCCACAAC 60.038 60.000 0.00 0.00 0.00 3.32
4355 6467 0.038159 CGTCTCCAGTCTCCACAACC 60.038 60.000 0.00 0.00 0.00 3.77
4356 6468 0.038159 GTCTCCAGTCTCCACAACCG 60.038 60.000 0.00 0.00 0.00 4.44
4360 6472 1.374758 CAGTCTCCACAACCGGCTC 60.375 63.158 0.00 0.00 0.00 4.70
4369 6481 1.971695 CAACCGGCTCCCTCAAACC 60.972 63.158 0.00 0.00 0.00 3.27
4407 6519 8.765219 TCTATACTAATTTCACGTACGTACTCC 58.235 37.037 22.34 0.00 0.00 3.85
4408 6520 4.986622 ACTAATTTCACGTACGTACTCCC 58.013 43.478 22.34 0.00 0.00 4.30
4410 6522 3.772060 ATTTCACGTACGTACTCCCTC 57.228 47.619 22.34 0.00 0.00 4.30
4412 6524 0.740868 TCACGTACGTACTCCCTCCG 60.741 60.000 22.34 10.64 0.00 4.63
4413 6525 1.021390 CACGTACGTACTCCCTCCGT 61.021 60.000 22.34 11.27 38.53 4.69
4414 6526 0.321653 ACGTACGTACTCCCTCCGTT 60.322 55.000 21.41 0.00 36.12 4.44
4415 6527 0.804989 CGTACGTACTCCCTCCGTTT 59.195 55.000 22.55 0.00 36.12 3.60
4416 6528 1.202076 CGTACGTACTCCCTCCGTTTC 60.202 57.143 22.55 0.00 36.12 2.78
4417 6529 2.087646 GTACGTACTCCCTCCGTTTCT 58.912 52.381 18.47 0.00 36.12 2.52
4418 6530 1.625511 ACGTACTCCCTCCGTTTCTT 58.374 50.000 0.00 0.00 0.00 2.52
4419 6531 1.966354 ACGTACTCCCTCCGTTTCTTT 59.034 47.619 0.00 0.00 0.00 2.52
4420 6532 2.366590 ACGTACTCCCTCCGTTTCTTTT 59.633 45.455 0.00 0.00 0.00 2.27
4421 6533 3.181462 ACGTACTCCCTCCGTTTCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
4422 6534 4.039124 ACGTACTCCCTCCGTTTCTTTTTA 59.961 41.667 0.00 0.00 0.00 1.52
4423 6535 4.386954 CGTACTCCCTCCGTTTCTTTTTAC 59.613 45.833 0.00 0.00 0.00 2.01
4424 6536 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
4425 6537 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
4426 6538 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
4427 6539 3.391955 TCCCTCCGTTTCTTTTTACTCCA 59.608 43.478 0.00 0.00 0.00 3.86
4428 6540 3.501062 CCCTCCGTTTCTTTTTACTCCAC 59.499 47.826 0.00 0.00 0.00 4.02
4429 6541 4.131596 CCTCCGTTTCTTTTTACTCCACA 58.868 43.478 0.00 0.00 0.00 4.17
4430 6542 4.760204 CCTCCGTTTCTTTTTACTCCACAT 59.240 41.667 0.00 0.00 0.00 3.21
4431 6543 5.935789 CCTCCGTTTCTTTTTACTCCACATA 59.064 40.000 0.00 0.00 0.00 2.29
4432 6544 6.598064 CCTCCGTTTCTTTTTACTCCACATAT 59.402 38.462 0.00 0.00 0.00 1.78
4433 6545 7.767198 CCTCCGTTTCTTTTTACTCCACATATA 59.233 37.037 0.00 0.00 0.00 0.86
4434 6546 9.158233 CTCCGTTTCTTTTTACTCCACATATAA 57.842 33.333 0.00 0.00 0.00 0.98
4435 6547 9.158233 TCCGTTTCTTTTTACTCCACATATAAG 57.842 33.333 0.00 0.00 0.00 1.73
4436 6548 9.158233 CCGTTTCTTTTTACTCCACATATAAGA 57.842 33.333 0.00 0.00 0.00 2.10
4441 6553 9.582431 TCTTTTTACTCCACATATAAGAGTTCG 57.418 33.333 6.74 0.00 41.09 3.95
4442 6554 9.367444 CTTTTTACTCCACATATAAGAGTTCGT 57.633 33.333 6.74 0.00 41.09 3.85
4443 6555 8.922058 TTTTACTCCACATATAAGAGTTCGTC 57.078 34.615 6.74 0.00 41.09 4.20
4444 6556 7.634671 TTACTCCACATATAAGAGTTCGTCA 57.365 36.000 6.74 0.00 41.09 4.35
4445 6557 6.525578 ACTCCACATATAAGAGTTCGTCAA 57.474 37.500 0.00 0.00 37.60 3.18
4446 6558 6.931838 ACTCCACATATAAGAGTTCGTCAAA 58.068 36.000 0.00 0.00 37.60 2.69
4447 6559 7.036220 ACTCCACATATAAGAGTTCGTCAAAG 58.964 38.462 0.00 0.00 37.60 2.77
4448 6560 6.931838 TCCACATATAAGAGTTCGTCAAAGT 58.068 36.000 0.00 0.00 0.00 2.66
4449 6561 7.033791 TCCACATATAAGAGTTCGTCAAAGTC 58.966 38.462 0.00 0.00 37.55 3.01
4450 6562 6.811665 CCACATATAAGAGTTCGTCAAAGTCA 59.188 38.462 0.00 0.00 39.43 3.41
4451 6563 7.330946 CCACATATAAGAGTTCGTCAAAGTCAA 59.669 37.037 0.00 0.00 39.43 3.18
4452 6564 8.708742 CACATATAAGAGTTCGTCAAAGTCAAA 58.291 33.333 0.00 0.00 39.43 2.69
4453 6565 8.709646 ACATATAAGAGTTCGTCAAAGTCAAAC 58.290 33.333 0.00 0.00 39.43 2.93
4454 6566 8.926710 CATATAAGAGTTCGTCAAAGTCAAACT 58.073 33.333 0.00 0.00 39.43 2.66
4456 6568 6.585389 AAGAGTTCGTCAAAGTCAAACTAC 57.415 37.500 0.00 0.00 39.43 2.73
4457 6569 5.657474 AGAGTTCGTCAAAGTCAAACTACA 58.343 37.500 0.00 0.00 39.43 2.74
4458 6570 5.519206 AGAGTTCGTCAAAGTCAAACTACAC 59.481 40.000 0.00 0.00 39.43 2.90
4459 6571 5.172934 AGTTCGTCAAAGTCAAACTACACA 58.827 37.500 0.00 0.00 0.00 3.72
4460 6572 5.640357 AGTTCGTCAAAGTCAAACTACACAA 59.360 36.000 0.00 0.00 0.00 3.33
4461 6573 6.148150 AGTTCGTCAAAGTCAAACTACACAAA 59.852 34.615 0.00 0.00 0.00 2.83
4462 6574 6.102006 TCGTCAAAGTCAAACTACACAAAG 57.898 37.500 0.00 0.00 0.00 2.77
4463 6575 5.640357 TCGTCAAAGTCAAACTACACAAAGT 59.360 36.000 0.00 0.00 0.00 2.66
4464 6576 6.148150 TCGTCAAAGTCAAACTACACAAAGTT 59.852 34.615 0.00 0.00 41.46 2.66
4466 6578 7.958567 CGTCAAAGTCAAACTACACAAAGTTTA 59.041 33.333 1.96 0.00 45.59 2.01
4467 6579 9.615295 GTCAAAGTCAAACTACACAAAGTTTAA 57.385 29.630 1.96 0.00 45.59 1.52
4541 6653 8.896320 AGTATGAAAATACGTATTATGGTGCA 57.104 30.769 20.62 10.59 32.52 4.57
4542 6654 9.502091 AGTATGAAAATACGTATTATGGTGCAT 57.498 29.630 20.62 16.35 32.52 3.96
4546 6658 9.495572 TGAAAATACGTATTATGGTGCATATGA 57.504 29.630 20.62 0.00 0.00 2.15
4612 6724 5.993106 AAGTCAGTCAAACTCTACAAAGC 57.007 39.130 0.00 0.00 0.00 3.51
4613 6725 5.283457 AGTCAGTCAAACTCTACAAAGCT 57.717 39.130 0.00 0.00 0.00 3.74
4614 6726 5.675538 AGTCAGTCAAACTCTACAAAGCTT 58.324 37.500 0.00 0.00 0.00 3.74
4615 6727 5.525378 AGTCAGTCAAACTCTACAAAGCTTG 59.475 40.000 0.00 0.00 0.00 4.01
4616 6728 5.523916 GTCAGTCAAACTCTACAAAGCTTGA 59.476 40.000 0.00 0.00 0.00 3.02
4617 6729 5.523916 TCAGTCAAACTCTACAAAGCTTGAC 59.476 40.000 0.00 10.63 0.00 3.18
4618 6730 5.525378 CAGTCAAACTCTACAAAGCTTGACT 59.475 40.000 13.94 13.94 33.82 3.41
4619 6731 6.037610 CAGTCAAACTCTACAAAGCTTGACTT 59.962 38.462 16.08 4.23 41.70 3.01
4629 6741 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
4630 6742 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
4631 6743 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
4632 6744 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
4633 6745 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
4634 6746 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
4635 6747 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
4636 6748 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
4637 6749 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
4638 6750 5.123186 TGACTTTGACCAAACCTTATATGCG 59.877 40.000 0.00 0.00 0.00 4.73
4639 6751 4.398044 ACTTTGACCAAACCTTATATGCGG 59.602 41.667 0.00 0.00 0.00 5.69
4640 6752 3.916359 TGACCAAACCTTATATGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
4641 6753 3.537580 TGACCAAACCTTATATGCGGAC 58.462 45.455 0.00 0.00 0.00 4.79
4642 6754 3.199071 TGACCAAACCTTATATGCGGACT 59.801 43.478 0.00 0.00 0.00 3.85
4643 6755 4.406326 TGACCAAACCTTATATGCGGACTA 59.594 41.667 0.00 0.00 0.00 2.59
4644 6756 5.104859 TGACCAAACCTTATATGCGGACTAA 60.105 40.000 0.00 0.00 0.00 2.24
4645 6757 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
4646 6758 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
4647 6759 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
4648 6760 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
4649 6761 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
4650 6762 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
4651 6763 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
4652 6764 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
4653 6765 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
4654 6766 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
4655 6767 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
4656 6768 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
4657 6769 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
4658 6770 2.740447 CGGACTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
4659 6771 3.555586 CGGACTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
4660 6772 4.001652 GGACTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
4664 6776 4.426736 AAAAAGAAACGGAGGGAGTACA 57.573 40.909 0.00 0.00 0.00 2.90
4667 6779 5.340439 AAAGAAACGGAGGGAGTACATAG 57.660 43.478 0.00 0.00 0.00 2.23
4670 6782 4.159879 AGAAACGGAGGGAGTACATAGTTG 59.840 45.833 0.00 0.00 0.00 3.16
4673 6785 3.446516 ACGGAGGGAGTACATAGTTGAAC 59.553 47.826 0.00 0.00 0.00 3.18
4675 6787 4.099573 CGGAGGGAGTACATAGTTGAACAT 59.900 45.833 0.00 0.00 0.00 2.71
4682 6794 7.438459 GGGAGTACATAGTTGAACATACATGTC 59.562 40.741 0.00 0.00 40.80 3.06
4685 6797 9.317936 AGTACATAGTTGAACATACATGTCATG 57.682 33.333 11.41 11.41 40.80 3.07
4692 6804 5.670485 TGAACATACATGTCATGGGACTAC 58.330 41.667 17.08 5.33 44.61 2.73
4709 6821 6.521162 GGGACTACCAAAATTTTGACATGTT 58.479 36.000 28.44 10.12 40.55 2.71
4710 6822 6.645003 GGGACTACCAAAATTTTGACATGTTC 59.355 38.462 28.44 18.87 40.55 3.18
4711 6823 6.362283 GGACTACCAAAATTTTGACATGTTCG 59.638 38.462 28.44 13.55 40.55 3.95
4712 6824 7.033530 ACTACCAAAATTTTGACATGTTCGA 57.966 32.000 28.44 5.86 40.55 3.71
4713 6825 6.915843 ACTACCAAAATTTTGACATGTTCGAC 59.084 34.615 28.44 0.00 40.55 4.20
4720 6832 6.648725 ATTTTGACATGTTCGACTAGCTAC 57.351 37.500 0.00 0.00 0.00 3.58
4722 6834 2.110226 GACATGTTCGACTAGCTACGC 58.890 52.381 0.00 0.00 0.00 4.42
4723 6835 1.202268 ACATGTTCGACTAGCTACGCC 60.202 52.381 0.00 0.00 0.00 5.68
4725 6837 0.883153 TGTTCGACTAGCTACGCCAA 59.117 50.000 0.00 0.00 0.00 4.52
4731 6843 2.927477 CGACTAGCTACGCCAATGAAAA 59.073 45.455 0.00 0.00 0.00 2.29
4751 6863 4.618920 AAAAGTTCATCCACGACTACCT 57.381 40.909 0.00 0.00 0.00 3.08
4754 6866 4.618920 AGTTCATCCACGACTACCTTTT 57.381 40.909 0.00 0.00 0.00 2.27
4755 6867 5.733620 AGTTCATCCACGACTACCTTTTA 57.266 39.130 0.00 0.00 0.00 1.52
4762 6875 2.740447 CACGACTACCTTTTACCCTTGC 59.260 50.000 0.00 0.00 0.00 4.01
4765 6878 1.092348 CTACCTTTTACCCTTGCCGC 58.908 55.000 0.00 0.00 0.00 6.53
4774 6887 4.362476 CCTTGCCGCCTTGGTTGC 62.362 66.667 0.00 0.00 41.21 4.17
4781 6894 4.390048 GCCTTGGTTGCGGAAGTA 57.610 55.556 0.00 0.00 0.00 2.24
4782 6895 2.171635 GCCTTGGTTGCGGAAGTAG 58.828 57.895 0.00 0.00 0.00 2.57
4783 6896 0.321298 GCCTTGGTTGCGGAAGTAGA 60.321 55.000 0.00 0.00 0.00 2.59
4784 6897 1.726853 CCTTGGTTGCGGAAGTAGAG 58.273 55.000 0.00 0.00 0.00 2.43
4785 6898 1.676014 CCTTGGTTGCGGAAGTAGAGG 60.676 57.143 0.00 0.00 0.00 3.69
4786 6899 1.002087 CTTGGTTGCGGAAGTAGAGGT 59.998 52.381 0.00 0.00 0.00 3.85
4787 6900 0.606604 TGGTTGCGGAAGTAGAGGTC 59.393 55.000 0.00 0.00 0.00 3.85
4788 6901 0.896226 GGTTGCGGAAGTAGAGGTCT 59.104 55.000 0.00 0.00 0.00 3.85
4789 6902 1.404315 GGTTGCGGAAGTAGAGGTCTG 60.404 57.143 0.00 0.00 0.00 3.51
4830 6943 1.194781 AATCTGCCCACTGTCGGAGT 61.195 55.000 0.00 0.00 34.02 3.85
4841 6954 0.323629 TGTCGGAGTTGTCCAATCCC 59.676 55.000 0.00 0.00 44.18 3.85
4844 6957 0.460284 CGGAGTTGTCCAATCCCTCG 60.460 60.000 0.00 0.00 44.18 4.63
4852 6965 2.107141 CAATCCCTCGCGGTCCTC 59.893 66.667 6.13 0.00 0.00 3.71
4853 6966 3.155167 AATCCCTCGCGGTCCTCC 61.155 66.667 6.13 0.00 0.00 4.30
4854 6967 3.976490 AATCCCTCGCGGTCCTCCA 62.976 63.158 6.13 0.00 0.00 3.86
4858 6971 3.382832 CTCGCGGTCCTCCACCTT 61.383 66.667 6.13 0.00 44.21 3.50
4859 6972 3.358076 CTCGCGGTCCTCCACCTTC 62.358 68.421 6.13 0.00 44.21 3.46
4860 6973 3.382832 CGCGGTCCTCCACCTTCT 61.383 66.667 0.00 0.00 44.21 2.85
4861 6974 2.579738 GCGGTCCTCCACCTTCTC 59.420 66.667 0.00 0.00 44.21 2.87
4862 6975 3.020237 GCGGTCCTCCACCTTCTCC 62.020 68.421 0.00 0.00 44.21 3.71
4863 6976 1.305381 CGGTCCTCCACCTTCTCCT 60.305 63.158 0.00 0.00 44.21 3.69
4864 6977 1.324005 CGGTCCTCCACCTTCTCCTC 61.324 65.000 0.00 0.00 44.21 3.71
4865 6978 0.041982 GGTCCTCCACCTTCTCCTCT 59.958 60.000 0.00 0.00 42.84 3.69
4866 6979 1.553651 GGTCCTCCACCTTCTCCTCTT 60.554 57.143 0.00 0.00 42.84 2.85
4867 6980 2.261729 GTCCTCCACCTTCTCCTCTTT 58.738 52.381 0.00 0.00 0.00 2.52
4868 6981 2.027653 GTCCTCCACCTTCTCCTCTTTG 60.028 54.545 0.00 0.00 0.00 2.77
4869 6982 1.280421 CCTCCACCTTCTCCTCTTTGG 59.720 57.143 0.00 0.00 37.10 3.28
4870 6983 1.280421 CTCCACCTTCTCCTCTTTGGG 59.720 57.143 0.00 0.00 36.20 4.12
4871 6984 1.068121 CCACCTTCTCCTCTTTGGGT 58.932 55.000 0.00 0.00 36.20 4.51
4872 6985 1.271597 CCACCTTCTCCTCTTTGGGTG 60.272 57.143 0.00 0.00 42.45 4.61
4873 6986 1.068121 ACCTTCTCCTCTTTGGGTGG 58.932 55.000 0.00 0.00 36.20 4.61
4874 6987 0.322906 CCTTCTCCTCTTTGGGTGGC 60.323 60.000 0.00 0.00 36.20 5.01
4875 6988 0.695347 CTTCTCCTCTTTGGGTGGCT 59.305 55.000 0.00 0.00 36.20 4.75
4876 6989 0.401738 TTCTCCTCTTTGGGTGGCTG 59.598 55.000 0.00 0.00 36.20 4.85
4877 6990 0.768221 TCTCCTCTTTGGGTGGCTGT 60.768 55.000 0.00 0.00 36.20 4.40
4878 6991 0.322008 CTCCTCTTTGGGTGGCTGTC 60.322 60.000 0.00 0.00 36.20 3.51
4879 6992 1.303643 CCTCTTTGGGTGGCTGTCC 60.304 63.158 0.00 0.00 0.00 4.02
4880 6993 1.303643 CTCTTTGGGTGGCTGTCCC 60.304 63.158 6.14 6.14 44.81 4.46
4903 7016 4.008933 GGCACAGACAGCCCGACT 62.009 66.667 0.00 0.00 46.50 4.18
4904 7017 2.031163 GCACAGACAGCCCGACTT 59.969 61.111 0.00 0.00 0.00 3.01
4905 7018 2.320587 GCACAGACAGCCCGACTTG 61.321 63.158 0.00 0.00 0.00 3.16
4906 7019 1.669115 CACAGACAGCCCGACTTGG 60.669 63.158 0.00 0.00 37.55 3.61
4914 7027 2.045926 CCCGACTTGGCTCCCTTG 60.046 66.667 0.00 0.00 35.87 3.61
4915 7028 2.747855 CCGACTTGGCTCCCTTGC 60.748 66.667 0.00 0.00 0.00 4.01
4923 7036 3.145551 GCTCCCTTGCCAGCCATG 61.146 66.667 0.00 0.00 0.00 3.66
4924 7037 3.145551 CTCCCTTGCCAGCCATGC 61.146 66.667 0.00 0.00 0.00 4.06
4928 7041 3.833645 CTTGCCAGCCATGCGCAT 61.834 61.111 19.28 19.28 41.38 4.73
4929 7042 3.768185 CTTGCCAGCCATGCGCATC 62.768 63.158 22.51 10.80 41.38 3.91
4931 7044 4.564116 GCCAGCCATGCGCATCAC 62.564 66.667 22.51 15.57 41.38 3.06
4932 7045 3.896133 CCAGCCATGCGCATCACC 61.896 66.667 22.51 11.56 41.38 4.02
4933 7046 3.896133 CAGCCATGCGCATCACCC 61.896 66.667 22.51 8.90 41.38 4.61
4934 7047 4.119363 AGCCATGCGCATCACCCT 62.119 61.111 22.51 11.15 41.38 4.34
4935 7048 3.589881 GCCATGCGCATCACCCTC 61.590 66.667 22.51 2.15 37.47 4.30
4936 7049 2.903855 CCATGCGCATCACCCTCC 60.904 66.667 22.51 0.00 0.00 4.30
4937 7050 2.191375 CATGCGCATCACCCTCCT 59.809 61.111 22.51 0.00 0.00 3.69
4938 7051 1.452651 CATGCGCATCACCCTCCTT 60.453 57.895 22.51 0.00 0.00 3.36
4939 7052 1.033746 CATGCGCATCACCCTCCTTT 61.034 55.000 22.51 0.00 0.00 3.11
4940 7053 1.033746 ATGCGCATCACCCTCCTTTG 61.034 55.000 19.28 0.00 0.00 2.77
4941 7054 3.056313 GCGCATCACCCTCCTTTGC 62.056 63.158 0.30 0.00 0.00 3.68
4942 7055 2.409870 CGCATCACCCTCCTTTGCC 61.410 63.158 0.00 0.00 0.00 4.52
4943 7056 2.409870 GCATCACCCTCCTTTGCCG 61.410 63.158 0.00 0.00 0.00 5.69
4944 7057 2.044946 ATCACCCTCCTTTGCCGC 60.045 61.111 0.00 0.00 0.00 6.53
4945 7058 2.606587 ATCACCCTCCTTTGCCGCT 61.607 57.895 0.00 0.00 0.00 5.52
4946 7059 2.142292 ATCACCCTCCTTTGCCGCTT 62.142 55.000 0.00 0.00 0.00 4.68
4947 7060 2.034221 ACCCTCCTTTGCCGCTTC 59.966 61.111 0.00 0.00 0.00 3.86
4948 7061 2.751837 CCCTCCTTTGCCGCTTCC 60.752 66.667 0.00 0.00 0.00 3.46
4949 7062 2.751837 CCTCCTTTGCCGCTTCCC 60.752 66.667 0.00 0.00 0.00 3.97
4950 7063 3.127533 CTCCTTTGCCGCTTCCCG 61.128 66.667 0.00 0.00 0.00 5.14
4953 7066 4.107051 CTTTGCCGCTTCCCGCTG 62.107 66.667 0.00 0.00 36.13 5.18
4954 7067 4.634703 TTTGCCGCTTCCCGCTGA 62.635 61.111 0.00 0.00 36.13 4.26
4955 7068 3.918253 TTTGCCGCTTCCCGCTGAT 62.918 57.895 0.00 0.00 36.13 2.90
4967 7080 3.869272 GCTGATGCGGGCACGAAG 61.869 66.667 15.48 4.21 44.60 3.79
4968 7081 3.197790 CTGATGCGGGCACGAAGG 61.198 66.667 15.48 0.00 44.60 3.46
4969 7082 3.958147 CTGATGCGGGCACGAAGGT 62.958 63.158 15.48 0.00 44.60 3.50
4971 7084 4.329545 ATGCGGGCACGAAGGTGT 62.330 61.111 15.48 0.00 46.13 4.16
4972 7085 3.842925 ATGCGGGCACGAAGGTGTT 62.843 57.895 15.48 0.00 46.13 3.32
4973 7086 3.284449 GCGGGCACGAAGGTGTTT 61.284 61.111 15.48 0.00 46.13 2.83
4974 7087 2.943653 CGGGCACGAAGGTGTTTC 59.056 61.111 0.00 0.00 46.13 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 221 0.888736 TGTGCCGTTGGTTGAGGATG 60.889 55.000 0.00 0.00 0.00 3.51
205 222 0.889186 GTGTGCCGTTGGTTGAGGAT 60.889 55.000 0.00 0.00 0.00 3.24
206 223 1.525077 GTGTGCCGTTGGTTGAGGA 60.525 57.895 0.00 0.00 0.00 3.71
259 276 1.355381 TGGACCTCCTTGTGCATCAAT 59.645 47.619 0.00 0.00 35.35 2.57
277 294 9.606631 AAAACATACTAAGCTCTCTAGATTTGG 57.393 33.333 0.00 0.00 32.49 3.28
299 349 8.930760 TGCACTGCCACAATTAATAATAAAAAC 58.069 29.630 0.00 0.00 0.00 2.43
322 374 0.179150 GCCAACGTCACTTGTTTGCA 60.179 50.000 0.00 0.00 37.76 4.08
384 437 3.094484 ACCAGAGAACCAACCAAAACA 57.906 42.857 0.00 0.00 0.00 2.83
404 457 6.017440 CCAACTTTTACCGATCAGAACTTGAA 60.017 38.462 0.00 0.00 39.77 2.69
407 460 4.215613 GCCAACTTTTACCGATCAGAACTT 59.784 41.667 0.00 0.00 0.00 2.66
413 466 2.432444 CTGGCCAACTTTTACCGATCA 58.568 47.619 7.01 0.00 0.00 2.92
419 472 1.000843 CCAAGGCTGGCCAACTTTTAC 59.999 52.381 17.30 0.00 35.39 2.01
446 499 0.324943 ACAAATCTCACACCCTCCCG 59.675 55.000 0.00 0.00 0.00 5.14
452 505 1.535462 CGGGAACACAAATCTCACACC 59.465 52.381 0.00 0.00 0.00 4.16
480 533 2.142292 AACACCCCAGATCCAGCCAC 62.142 60.000 0.00 0.00 0.00 5.01
505 592 5.104259 AGAATAAAACATCGAAGAGGGCT 57.896 39.130 0.00 0.00 45.68 5.19
514 601 2.218759 CGCTCCGGAGAATAAAACATCG 59.781 50.000 35.69 19.69 0.00 3.84
541 628 5.352569 AGTTCATAGAATCAGCGGTCAAAAG 59.647 40.000 0.00 0.00 0.00 2.27
542 629 5.245531 AGTTCATAGAATCAGCGGTCAAAA 58.754 37.500 0.00 0.00 0.00 2.44
543 630 4.832248 AGTTCATAGAATCAGCGGTCAAA 58.168 39.130 0.00 0.00 0.00 2.69
544 631 4.471904 AGTTCATAGAATCAGCGGTCAA 57.528 40.909 0.00 0.00 0.00 3.18
554 688 9.545105 TTGTTGAAATGCAAAAGTTCATAGAAT 57.455 25.926 0.00 0.00 42.11 2.40
560 694 7.041508 ACAAACTTGTTGAAATGCAAAAGTTCA 60.042 29.630 11.75 0.00 41.46 3.18
561 695 7.297391 ACAAACTTGTTGAAATGCAAAAGTTC 58.703 30.769 11.75 0.00 41.46 3.01
563 697 6.799926 ACAAACTTGTTGAAATGCAAAAGT 57.200 29.167 0.00 0.00 38.47 2.66
586 720 0.316204 GGGTCTCCGTCTTCGTGAAA 59.684 55.000 0.00 0.00 35.01 2.69
588 722 1.074423 AGGGTCTCCGTCTTCGTGA 59.926 57.895 0.00 0.00 38.33 4.35
612 746 2.578021 AGGACCCTACATGCTCATTGTT 59.422 45.455 0.00 0.00 0.00 2.83
678 812 3.556365 GTGCGAGCCTAAATAACTCTTCC 59.444 47.826 0.00 0.00 0.00 3.46
770 905 7.490402 CCATTCTCCAAGCAAATTTCTAATGTC 59.510 37.037 0.00 0.00 0.00 3.06
793 928 1.336632 GGGTGCTCTGCTCTCTCCAT 61.337 60.000 0.00 0.00 0.00 3.41
794 929 1.986757 GGGTGCTCTGCTCTCTCCA 60.987 63.158 0.00 0.00 0.00 3.86
796 931 1.217779 GTGGGTGCTCTGCTCTCTC 59.782 63.158 0.00 0.00 0.00 3.20
801 936 3.958860 GTGGGTGGGTGCTCTGCT 61.959 66.667 0.00 0.00 0.00 4.24
803 938 4.351054 GGGTGGGTGGGTGCTCTG 62.351 72.222 0.00 0.00 0.00 3.35
807 942 4.315264 ATTGGGGTGGGTGGGTGC 62.315 66.667 0.00 0.00 0.00 5.01
808 943 2.283821 CATTGGGGTGGGTGGGTG 60.284 66.667 0.00 0.00 0.00 4.61
809 944 4.315264 GCATTGGGGTGGGTGGGT 62.315 66.667 0.00 0.00 0.00 4.51
810 945 3.996621 AGCATTGGGGTGGGTGGG 61.997 66.667 0.00 0.00 0.00 4.61
811 946 2.681064 CAGCATTGGGGTGGGTGG 60.681 66.667 0.00 0.00 41.32 4.61
862 2695 3.294493 TTGCGGGTGCTTTGCCTC 61.294 61.111 0.00 0.00 43.34 4.70
864 2697 4.999939 CGTTGCGGGTGCTTTGCC 63.000 66.667 0.00 0.00 43.34 4.52
1084 2917 4.432741 GGGCTGGTTGGAGGAGGC 62.433 72.222 0.00 0.00 0.00 4.70
1425 3258 5.661056 TGATGAAGTCGTTCTTGAGGTAT 57.339 39.130 1.01 0.00 36.40 2.73
1498 3331 4.692228 GATGGAGAGATTGTGAGAAGGAC 58.308 47.826 0.00 0.00 0.00 3.85
1503 3339 3.356290 TGACGATGGAGAGATTGTGAGA 58.644 45.455 0.00 0.00 0.00 3.27
1505 3341 3.258123 TGTTGACGATGGAGAGATTGTGA 59.742 43.478 0.00 0.00 0.00 3.58
1506 3342 3.588955 TGTTGACGATGGAGAGATTGTG 58.411 45.455 0.00 0.00 0.00 3.33
1507 3343 3.961480 TGTTGACGATGGAGAGATTGT 57.039 42.857 0.00 0.00 0.00 2.71
1508 3344 4.590400 GTTGTTGACGATGGAGAGATTG 57.410 45.455 0.00 0.00 0.00 2.67
1526 3362 2.910482 CCAGATTTGAAATGCGTCGTTG 59.090 45.455 0.00 0.00 0.00 4.10
1527 3363 2.668279 GCCAGATTTGAAATGCGTCGTT 60.668 45.455 0.00 0.00 0.00 3.85
1528 3364 1.135689 GCCAGATTTGAAATGCGTCGT 60.136 47.619 0.00 0.00 0.00 4.34
1567 3421 9.979578 AATTTAACACAAGAGCACAAATATTGA 57.020 25.926 0.00 0.00 0.00 2.57
1570 3424 9.979578 TGAAATTTAACACAAGAGCACAAATAT 57.020 25.926 0.00 0.00 0.00 1.28
1571 3425 9.462174 CTGAAATTTAACACAAGAGCACAAATA 57.538 29.630 0.00 0.00 0.00 1.40
1572 3426 8.196771 TCTGAAATTTAACACAAGAGCACAAAT 58.803 29.630 0.00 0.00 0.00 2.32
1573 3427 7.542890 TCTGAAATTTAACACAAGAGCACAAA 58.457 30.769 0.00 0.00 0.00 2.83
1574 3428 7.094508 TCTGAAATTTAACACAAGAGCACAA 57.905 32.000 0.00 0.00 0.00 3.33
1575 3429 6.691754 TCTGAAATTTAACACAAGAGCACA 57.308 33.333 0.00 0.00 0.00 4.57
1576 3430 7.985634 TTTCTGAAATTTAACACAAGAGCAC 57.014 32.000 0.00 0.00 0.00 4.40
1577 3431 8.196771 ACATTTCTGAAATTTAACACAAGAGCA 58.803 29.630 12.74 0.00 0.00 4.26
1578 3432 8.579682 ACATTTCTGAAATTTAACACAAGAGC 57.420 30.769 12.74 0.00 0.00 4.09
1579 3433 9.734620 TGACATTTCTGAAATTTAACACAAGAG 57.265 29.630 12.74 0.90 0.00 2.85
1620 3474 7.234384 CAGGATTAACTGTATCACGTCAAAAC 58.766 38.462 0.00 0.00 33.81 2.43
1695 3553 1.840635 AGGGAAGCTGTATCAAGGTCC 59.159 52.381 0.00 0.00 0.00 4.46
1776 3651 4.814234 TCAGTATGTGACTTGTGTTTGACC 59.186 41.667 0.00 0.00 35.64 4.02
1865 3784 0.036105 TGGTGCTCACAGCTGGTATG 60.036 55.000 19.93 7.62 44.77 2.39
1982 3901 1.968493 GTGACCACTCCACTGGACTTA 59.032 52.381 0.00 0.00 35.04 2.24
2138 4066 5.013183 GGCTCCCAGAACCTACATAACATAT 59.987 44.000 0.00 0.00 0.00 1.78
2291 4235 1.026718 GCCACTTCATCCGAACAGGG 61.027 60.000 0.00 0.00 41.52 4.45
2342 4286 3.699134 AAATCTCGCCCCGGGAAGC 62.699 63.158 26.32 17.84 40.69 3.86
2369 4313 3.529533 CTTGAGAGCATCCTCGAACAAT 58.470 45.455 0.00 0.00 43.05 2.71
2572 4570 1.225855 CGTAGGTGCTGTTCTGCAAA 58.774 50.000 5.99 0.00 45.12 3.68
2710 4708 5.303971 TGCAGGGTAAATTTTCAAACATGG 58.696 37.500 0.00 0.00 0.00 3.66
2718 4716 3.578688 CACAGCTGCAGGGTAAATTTTC 58.421 45.455 17.12 0.00 0.00 2.29
2720 4718 1.895131 CCACAGCTGCAGGGTAAATTT 59.105 47.619 17.12 0.00 0.00 1.82
2723 4721 0.698238 ATCCACAGCTGCAGGGTAAA 59.302 50.000 21.74 6.66 0.00 2.01
2724 4722 1.578897 TATCCACAGCTGCAGGGTAA 58.421 50.000 21.74 6.97 0.00 2.85
2726 4724 0.921896 AATATCCACAGCTGCAGGGT 59.078 50.000 21.74 18.57 0.00 4.34
2727 4725 1.315690 CAATATCCACAGCTGCAGGG 58.684 55.000 21.74 17.15 0.00 4.45
2731 4729 0.752743 TGGGCAATATCCACAGCTGC 60.753 55.000 15.27 0.00 0.00 5.25
2732 4730 1.766494 TTGGGCAATATCCACAGCTG 58.234 50.000 13.48 13.48 33.43 4.24
2778 4846 4.341366 AAAAACAAAGAGCCAAGATGGG 57.659 40.909 0.00 0.00 38.19 4.00
2956 5024 2.772691 GGATTCCTCGTCGACGCCT 61.773 63.158 32.19 14.28 39.60 5.52
3088 5156 1.371758 CGGAGTCACAGTCACCGTG 60.372 63.158 0.00 0.00 38.97 4.94
3094 5162 1.442857 CAGCGTCGGAGTCACAGTC 60.443 63.158 0.00 0.00 0.00 3.51
3096 5164 1.004277 GTTCAGCGTCGGAGTCACAG 61.004 60.000 0.00 0.00 0.00 3.66
3097 5165 1.007734 GTTCAGCGTCGGAGTCACA 60.008 57.895 0.00 0.00 0.00 3.58
3128 5196 0.032403 GCAATGCAAGCAAGACCACA 59.968 50.000 0.00 0.00 0.00 4.17
3377 5445 4.457496 ATCAGCGCCCACGTCAGG 62.457 66.667 2.29 0.00 42.83 3.86
3944 6018 1.273606 TCCTCGGAGTGCAAAGAGAAG 59.726 52.381 4.02 0.00 32.84 2.85
3978 6052 2.415090 GCAGTGTACGTATCGTGTTCCT 60.415 50.000 0.00 0.00 41.39 3.36
4024 6104 3.203716 AGGAACAACCGAACAAGAGAAC 58.796 45.455 0.00 0.00 44.74 3.01
4068 6151 1.278985 TCATGATCCTGACCAGCGTTT 59.721 47.619 0.00 0.00 0.00 3.60
4174 6258 6.133356 AGATCAACTTTACACCCCTCAAAAA 58.867 36.000 0.00 0.00 0.00 1.94
4175 6259 5.701224 AGATCAACTTTACACCCCTCAAAA 58.299 37.500 0.00 0.00 0.00 2.44
4176 6260 5.319043 AGATCAACTTTACACCCCTCAAA 57.681 39.130 0.00 0.00 0.00 2.69
4177 6261 4.993705 AGATCAACTTTACACCCCTCAA 57.006 40.909 0.00 0.00 0.00 3.02
4178 6262 4.993705 AAGATCAACTTTACACCCCTCA 57.006 40.909 0.00 0.00 34.94 3.86
4179 6263 6.051179 AGTAAGATCAACTTTACACCCCTC 57.949 41.667 0.00 0.00 39.72 4.30
4180 6264 6.043938 TCAAGTAAGATCAACTTTACACCCCT 59.956 38.462 9.97 0.00 39.72 4.79
4181 6265 6.235664 TCAAGTAAGATCAACTTTACACCCC 58.764 40.000 9.97 0.00 39.72 4.95
4182 6266 7.159372 TCTCAAGTAAGATCAACTTTACACCC 58.841 38.462 9.97 0.00 39.72 4.61
4183 6267 8.603242 TTCTCAAGTAAGATCAACTTTACACC 57.397 34.615 9.97 0.00 39.72 4.16
4184 6268 9.865484 GTTTCTCAAGTAAGATCAACTTTACAC 57.135 33.333 9.97 2.19 39.72 2.90
4185 6269 9.607988 TGTTTCTCAAGTAAGATCAACTTTACA 57.392 29.630 9.97 7.60 39.72 2.41
4186 6270 9.865484 GTGTTTCTCAAGTAAGATCAACTTTAC 57.135 33.333 9.97 3.25 39.72 2.01
4187 6271 9.832445 AGTGTTTCTCAAGTAAGATCAACTTTA 57.168 29.630 9.97 3.55 39.72 1.85
4218 6302 3.777465 TCGCTGGAGTACACTTACATC 57.223 47.619 0.00 0.00 0.00 3.06
4243 6327 2.229784 GGTCAGCTTTTCACATTCAGGG 59.770 50.000 0.00 0.00 0.00 4.45
4273 6357 3.303461 CGTAGATGCTCTTACCTCTCACG 60.303 52.174 0.00 0.00 0.00 4.35
4296 6380 3.411517 ACCGAGGGCCAGGGATTG 61.412 66.667 18.51 0.00 0.00 2.67
4297 6381 3.411517 CACCGAGGGCCAGGGATT 61.412 66.667 18.51 0.00 0.00 3.01
4311 6395 2.309528 TTGATATGTGCTCGGTCACC 57.690 50.000 5.71 0.00 36.17 4.02
4319 6431 4.184629 GAGACGGACTTTTGATATGTGCT 58.815 43.478 0.00 0.00 0.00 4.40
4344 6456 2.047179 GGAGCCGGTTGTGGAGAC 60.047 66.667 1.90 0.00 0.00 3.36
4345 6457 3.319198 GGGAGCCGGTTGTGGAGA 61.319 66.667 1.90 0.00 0.00 3.71
4346 6458 3.316573 GAGGGAGCCGGTTGTGGAG 62.317 68.421 1.90 0.00 0.00 3.86
4347 6459 3.319198 GAGGGAGCCGGTTGTGGA 61.319 66.667 1.90 0.00 0.00 4.02
4348 6460 2.690653 TTTGAGGGAGCCGGTTGTGG 62.691 60.000 1.90 0.00 0.00 4.17
4349 6461 1.228124 TTTGAGGGAGCCGGTTGTG 60.228 57.895 1.90 0.00 0.00 3.33
4350 6462 1.228154 GTTTGAGGGAGCCGGTTGT 60.228 57.895 1.90 0.00 0.00 3.32
4351 6463 1.971695 GGTTTGAGGGAGCCGGTTG 60.972 63.158 1.90 0.00 0.00 3.77
4352 6464 2.002018 TTGGTTTGAGGGAGCCGGTT 62.002 55.000 1.90 0.00 0.00 4.44
4353 6465 2.002018 TTTGGTTTGAGGGAGCCGGT 62.002 55.000 1.90 0.00 0.00 5.28
4354 6466 0.611896 ATTTGGTTTGAGGGAGCCGG 60.612 55.000 0.00 0.00 0.00 6.13
4355 6467 0.811281 GATTTGGTTTGAGGGAGCCG 59.189 55.000 0.00 0.00 0.00 5.52
4356 6468 1.186200 GGATTTGGTTTGAGGGAGCC 58.814 55.000 0.00 0.00 0.00 4.70
4360 6472 4.774200 AGATTTGAGGATTTGGTTTGAGGG 59.226 41.667 0.00 0.00 0.00 4.30
4390 6502 2.424956 GGAGGGAGTACGTACGTGAAAT 59.575 50.000 30.25 11.23 0.00 2.17
4396 6508 0.804989 AAACGGAGGGAGTACGTACG 59.195 55.000 19.49 15.01 46.37 3.67
4398 6510 2.496899 AGAAACGGAGGGAGTACGTA 57.503 50.000 0.00 0.00 40.31 3.57
4400 6512 2.738013 AAAGAAACGGAGGGAGTACG 57.262 50.000 0.00 0.00 0.00 3.67
4401 6513 5.545588 AGTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
4402 6514 5.279657 GGAGTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
4403 6515 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
4404 6516 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
4405 6517 3.391955 TGGAGTAAAAAGAAACGGAGGGA 59.608 43.478 0.00 0.00 0.00 4.20
4406 6518 3.501062 GTGGAGTAAAAAGAAACGGAGGG 59.499 47.826 0.00 0.00 0.00 4.30
4407 6519 4.131596 TGTGGAGTAAAAAGAAACGGAGG 58.868 43.478 0.00 0.00 0.00 4.30
4408 6520 5.941948 ATGTGGAGTAAAAAGAAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
4410 6522 9.158233 TCTTATATGTGGAGTAAAAAGAAACGG 57.842 33.333 0.00 0.00 0.00 4.44
4415 6527 9.582431 CGAACTCTTATATGTGGAGTAAAAAGA 57.418 33.333 7.24 0.00 39.09 2.52
4416 6528 9.367444 ACGAACTCTTATATGTGGAGTAAAAAG 57.633 33.333 0.00 0.00 39.09 2.27
4417 6529 9.362539 GACGAACTCTTATATGTGGAGTAAAAA 57.637 33.333 0.00 0.00 39.09 1.94
4418 6530 8.525316 TGACGAACTCTTATATGTGGAGTAAAA 58.475 33.333 0.00 0.00 39.09 1.52
4419 6531 8.058667 TGACGAACTCTTATATGTGGAGTAAA 57.941 34.615 0.00 0.00 39.09 2.01
4420 6532 7.634671 TGACGAACTCTTATATGTGGAGTAA 57.365 36.000 0.00 0.00 39.09 2.24
4421 6533 7.634671 TTGACGAACTCTTATATGTGGAGTA 57.365 36.000 0.00 0.00 39.09 2.59
4422 6534 6.525578 TTGACGAACTCTTATATGTGGAGT 57.474 37.500 0.00 0.00 41.37 3.85
4423 6535 7.036220 ACTTTGACGAACTCTTATATGTGGAG 58.964 38.462 0.00 0.00 0.00 3.86
4424 6536 6.931838 ACTTTGACGAACTCTTATATGTGGA 58.068 36.000 0.00 0.00 0.00 4.02
4425 6537 6.811665 TGACTTTGACGAACTCTTATATGTGG 59.188 38.462 0.00 0.00 0.00 4.17
4426 6538 7.812309 TGACTTTGACGAACTCTTATATGTG 57.188 36.000 0.00 0.00 0.00 3.21
4427 6539 8.709646 GTTTGACTTTGACGAACTCTTATATGT 58.290 33.333 0.00 0.00 0.00 2.29
4428 6540 8.926710 AGTTTGACTTTGACGAACTCTTATATG 58.073 33.333 0.00 0.00 37.39 1.78
4430 6542 9.403110 GTAGTTTGACTTTGACGAACTCTTATA 57.597 33.333 0.00 0.00 40.83 0.98
4431 6543 7.924412 TGTAGTTTGACTTTGACGAACTCTTAT 59.076 33.333 0.00 0.00 40.83 1.73
4432 6544 7.221452 GTGTAGTTTGACTTTGACGAACTCTTA 59.779 37.037 0.00 0.00 40.83 2.10
4433 6545 6.035758 GTGTAGTTTGACTTTGACGAACTCTT 59.964 38.462 0.00 0.00 40.83 2.85
4434 6546 5.519206 GTGTAGTTTGACTTTGACGAACTCT 59.481 40.000 0.00 0.00 40.83 3.24
4435 6547 5.290158 TGTGTAGTTTGACTTTGACGAACTC 59.710 40.000 0.00 0.00 40.83 3.01
4436 6548 5.172934 TGTGTAGTTTGACTTTGACGAACT 58.827 37.500 0.00 0.00 42.39 3.01
4437 6549 5.459110 TGTGTAGTTTGACTTTGACGAAC 57.541 39.130 0.00 0.00 33.35 3.95
4438 6550 6.148150 ACTTTGTGTAGTTTGACTTTGACGAA 59.852 34.615 0.00 0.00 0.00 3.85
4439 6551 5.640357 ACTTTGTGTAGTTTGACTTTGACGA 59.360 36.000 0.00 0.00 0.00 4.20
4440 6552 5.864986 ACTTTGTGTAGTTTGACTTTGACG 58.135 37.500 0.00 0.00 0.00 4.35
4441 6553 9.615295 TTAAACTTTGTGTAGTTTGACTTTGAC 57.385 29.630 10.98 0.00 45.36 3.18
4515 6627 9.984190 TGCACCATAATACGTATTTTCATACTA 57.016 29.630 24.81 5.90 34.10 1.82
4516 6628 8.896320 TGCACCATAATACGTATTTTCATACT 57.104 30.769 24.81 1.82 34.10 2.12
4520 6632 9.495572 TCATATGCACCATAATACGTATTTTCA 57.504 29.630 24.81 11.97 29.74 2.69
4586 6698 9.204570 GCTTTGTAGAGTTTGACTGACTTTATA 57.795 33.333 0.00 0.00 0.00 0.98
4587 6699 7.934120 AGCTTTGTAGAGTTTGACTGACTTTAT 59.066 33.333 0.00 0.00 0.00 1.40
4588 6700 7.272978 AGCTTTGTAGAGTTTGACTGACTTTA 58.727 34.615 0.00 0.00 0.00 1.85
4589 6701 6.116126 AGCTTTGTAGAGTTTGACTGACTTT 58.884 36.000 0.00 0.00 0.00 2.66
4590 6702 5.675538 AGCTTTGTAGAGTTTGACTGACTT 58.324 37.500 0.00 0.00 0.00 3.01
4591 6703 5.283457 AGCTTTGTAGAGTTTGACTGACT 57.717 39.130 0.00 0.00 0.00 3.41
4592 6704 5.523916 TCAAGCTTTGTAGAGTTTGACTGAC 59.476 40.000 0.00 0.00 40.46 3.51
4593 6705 5.670485 TCAAGCTTTGTAGAGTTTGACTGA 58.330 37.500 0.00 0.00 40.46 3.41
4594 6706 5.991328 TCAAGCTTTGTAGAGTTTGACTG 57.009 39.130 0.00 0.00 40.46 3.51
4609 6721 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
4610 6722 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
4611 6723 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
4612 6724 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
4613 6725 6.348950 CGCATATAAGGTTTGGTCAAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
4614 6726 5.123186 CGCATATAAGGTTTGGTCAAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
4615 6727 5.448632 CCGCATATAAGGTTTGGTCAAAGTC 60.449 44.000 0.00 0.00 0.00 3.01
4616 6728 4.398044 CCGCATATAAGGTTTGGTCAAAGT 59.602 41.667 0.00 0.00 0.00 2.66
4617 6729 4.638421 TCCGCATATAAGGTTTGGTCAAAG 59.362 41.667 0.00 0.00 0.00 2.77
4618 6730 4.396790 GTCCGCATATAAGGTTTGGTCAAA 59.603 41.667 0.00 0.00 0.00 2.69
4619 6731 3.942748 GTCCGCATATAAGGTTTGGTCAA 59.057 43.478 0.00 0.00 0.00 3.18
4620 6732 3.199071 AGTCCGCATATAAGGTTTGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
4621 6733 3.805207 AGTCCGCATATAAGGTTTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
4622 6734 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
4623 6735 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
4624 6736 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
4625 6737 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
4626 6738 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
4627 6739 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
4628 6740 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
4629 6741 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
4630 6742 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
4631 6743 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
4632 6744 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
4633 6745 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
4634 6746 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
4635 6747 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
4636 6748 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
4637 6749 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
4638 6750 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
4639 6751 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
4640 6752 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
4641 6753 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
4642 6754 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
4643 6755 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
4644 6756 4.635699 ATGTACTCCCTCCGTTTCTTTT 57.364 40.909 0.00 0.00 0.00 2.27
4645 6757 4.776308 ACTATGTACTCCCTCCGTTTCTTT 59.224 41.667 0.00 0.00 0.00 2.52
4646 6758 4.351127 ACTATGTACTCCCTCCGTTTCTT 58.649 43.478 0.00 0.00 0.00 2.52
4647 6759 3.978610 ACTATGTACTCCCTCCGTTTCT 58.021 45.455 0.00 0.00 0.00 2.52
4648 6760 4.159135 TCAACTATGTACTCCCTCCGTTTC 59.841 45.833 0.00 0.00 0.00 2.78
4649 6761 4.091549 TCAACTATGTACTCCCTCCGTTT 58.908 43.478 0.00 0.00 0.00 3.60
4650 6762 3.705051 TCAACTATGTACTCCCTCCGTT 58.295 45.455 0.00 0.00 0.00 4.44
4651 6763 3.377253 TCAACTATGTACTCCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
4652 6764 3.446161 TGTTCAACTATGTACTCCCTCCG 59.554 47.826 0.00 0.00 0.00 4.63
4653 6765 5.615925 ATGTTCAACTATGTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
4654 6766 7.108841 TGTATGTTCAACTATGTACTCCCTC 57.891 40.000 0.00 0.00 0.00 4.30
4655 6767 7.125811 ACATGTATGTTCAACTATGTACTCCCT 59.874 37.037 0.00 0.00 37.90 4.20
4656 6768 7.272978 ACATGTATGTTCAACTATGTACTCCC 58.727 38.462 0.00 0.00 37.90 4.30
4657 6769 7.979537 TGACATGTATGTTCAACTATGTACTCC 59.020 37.037 0.00 0.00 41.95 3.85
4658 6770 8.926715 TGACATGTATGTTCAACTATGTACTC 57.073 34.615 0.00 0.00 41.95 2.59
4659 6771 9.317936 CATGACATGTATGTTCAACTATGTACT 57.682 33.333 7.31 0.00 41.95 2.73
4660 6772 8.551205 CCATGACATGTATGTTCAACTATGTAC 58.449 37.037 14.26 0.00 41.95 2.90
4664 6776 6.767902 GTCCCATGACATGTATGTTCAACTAT 59.232 38.462 14.26 0.00 41.95 2.12
4667 6779 4.943705 AGTCCCATGACATGTATGTTCAAC 59.056 41.667 14.26 0.00 44.33 3.18
4670 6782 5.057149 GGTAGTCCCATGACATGTATGTTC 58.943 45.833 14.26 1.47 44.33 3.18
4673 6785 4.687901 TGGTAGTCCCATGACATGTATG 57.312 45.455 14.26 3.45 44.33 2.39
4675 6787 5.506730 TTTTGGTAGTCCCATGACATGTA 57.493 39.130 14.26 0.00 44.74 2.29
4682 6794 6.095432 TGTCAAAATTTTGGTAGTCCCATG 57.905 37.500 26.45 1.86 44.74 3.66
4685 6797 6.096673 ACATGTCAAAATTTTGGTAGTCCC 57.903 37.500 26.45 9.74 38.66 4.46
4692 6804 6.088085 GCTAGTCGAACATGTCAAAATTTTGG 59.912 38.462 26.45 15.04 38.66 3.28
4701 6813 3.400505 CGTAGCTAGTCGAACATGTCA 57.599 47.619 0.00 0.00 0.00 3.58
4731 6843 4.618920 AAGGTAGTCGTGGATGAACTTT 57.381 40.909 0.00 0.00 0.00 2.66
4751 6863 1.182385 CCAAGGCGGCAAGGGTAAAA 61.182 55.000 13.08 0.00 0.00 1.52
4754 6866 2.836187 AACCAAGGCGGCAAGGGTA 61.836 57.895 20.85 0.00 39.03 3.69
4755 6867 4.218686 AACCAAGGCGGCAAGGGT 62.219 61.111 20.85 16.78 39.03 4.34
4765 6878 1.676014 CCTCTACTTCCGCAACCAAGG 60.676 57.143 0.00 0.00 0.00 3.61
4774 6887 2.034053 GCATCTCAGACCTCTACTTCCG 59.966 54.545 0.00 0.00 0.00 4.30
4775 6888 3.027412 TGCATCTCAGACCTCTACTTCC 58.973 50.000 0.00 0.00 0.00 3.46
4776 6889 4.727507 TTGCATCTCAGACCTCTACTTC 57.272 45.455 0.00 0.00 0.00 3.01
4777 6890 5.241662 GTTTTGCATCTCAGACCTCTACTT 58.758 41.667 0.00 0.00 0.00 2.24
4779 6892 3.614616 CGTTTTGCATCTCAGACCTCTAC 59.385 47.826 0.00 0.00 0.00 2.59
4780 6893 3.368427 CCGTTTTGCATCTCAGACCTCTA 60.368 47.826 0.00 0.00 0.00 2.43
4781 6894 2.613977 CCGTTTTGCATCTCAGACCTCT 60.614 50.000 0.00 0.00 0.00 3.69
4782 6895 1.734465 CCGTTTTGCATCTCAGACCTC 59.266 52.381 0.00 0.00 0.00 3.85
4783 6896 1.347707 TCCGTTTTGCATCTCAGACCT 59.652 47.619 0.00 0.00 0.00 3.85
4784 6897 1.808411 TCCGTTTTGCATCTCAGACC 58.192 50.000 0.00 0.00 0.00 3.85
4785 6898 3.002791 TGATCCGTTTTGCATCTCAGAC 58.997 45.455 0.00 0.00 0.00 3.51
4786 6899 3.333029 TGATCCGTTTTGCATCTCAGA 57.667 42.857 0.00 0.00 0.00 3.27
4787 6900 3.181503 CCTTGATCCGTTTTGCATCTCAG 60.182 47.826 0.00 0.00 0.00 3.35
4788 6901 2.749076 CCTTGATCCGTTTTGCATCTCA 59.251 45.455 0.00 0.00 0.00 3.27
4789 6902 2.478539 GCCTTGATCCGTTTTGCATCTC 60.479 50.000 0.00 0.00 0.00 2.75
4818 6931 0.105964 TTGGACAACTCCGACAGTGG 59.894 55.000 0.00 0.00 39.88 4.00
4823 6936 0.613777 AGGGATTGGACAACTCCGAC 59.386 55.000 0.00 0.00 39.88 4.79
4852 6965 1.068121 ACCCAAAGAGGAGAAGGTGG 58.932 55.000 0.00 0.00 41.22 4.61
4853 6966 1.271597 CCACCCAAAGAGGAGAAGGTG 60.272 57.143 0.00 0.00 43.52 4.00
4854 6967 1.068121 CCACCCAAAGAGGAGAAGGT 58.932 55.000 0.00 0.00 41.22 3.50
4855 6968 0.322906 GCCACCCAAAGAGGAGAAGG 60.323 60.000 0.00 0.00 41.22 3.46
4856 6969 0.695347 AGCCACCCAAAGAGGAGAAG 59.305 55.000 0.00 0.00 41.22 2.85
4857 6970 0.401738 CAGCCACCCAAAGAGGAGAA 59.598 55.000 0.00 0.00 41.22 2.87
4858 6971 0.768221 ACAGCCACCCAAAGAGGAGA 60.768 55.000 0.00 0.00 41.22 3.71
4859 6972 0.322008 GACAGCCACCCAAAGAGGAG 60.322 60.000 0.00 0.00 41.22 3.69
4860 6973 1.761174 GACAGCCACCCAAAGAGGA 59.239 57.895 0.00 0.00 41.22 3.71
4861 6974 1.303643 GGACAGCCACCCAAAGAGG 60.304 63.158 0.00 0.00 37.03 3.69
4862 6975 1.303643 GGGACAGCCACCCAAAGAG 60.304 63.158 0.00 0.00 46.05 2.85
4863 6976 2.843545 GGGACAGCCACCCAAAGA 59.156 61.111 0.00 0.00 46.05 2.52
4877 6990 4.408821 GTCTGTGCCATGGCGGGA 62.409 66.667 30.87 23.70 45.51 5.14
4878 6991 4.720902 TGTCTGTGCCATGGCGGG 62.721 66.667 30.87 21.91 45.51 6.13
4879 6992 3.129502 CTGTCTGTGCCATGGCGG 61.130 66.667 30.87 22.26 45.51 6.13
4880 6993 3.807538 GCTGTCTGTGCCATGGCG 61.808 66.667 30.87 17.51 45.51 5.69
4887 7000 2.031163 AAGTCGGGCTGTCTGTGC 59.969 61.111 0.00 0.00 0.00 4.57
4888 7001 1.669115 CCAAGTCGGGCTGTCTGTG 60.669 63.158 0.00 0.00 0.00 3.66
4889 7002 2.743718 CCAAGTCGGGCTGTCTGT 59.256 61.111 0.00 0.00 0.00 3.41
4897 7010 2.045926 CAAGGGAGCCAAGTCGGG 60.046 66.667 0.00 0.00 34.06 5.14
4898 7011 2.747855 GCAAGGGAGCCAAGTCGG 60.748 66.667 0.00 0.00 38.11 4.79
4906 7019 3.145551 CATGGCTGGCAAGGGAGC 61.146 66.667 8.35 0.00 34.23 4.70
4907 7020 3.145551 GCATGGCTGGCAAGGGAG 61.146 66.667 8.35 0.00 0.00 4.30
4911 7024 3.768185 GATGCGCATGGCTGGCAAG 62.768 63.158 30.76 4.80 44.05 4.01
4912 7025 3.829044 GATGCGCATGGCTGGCAA 61.829 61.111 30.76 0.00 44.05 4.52
4914 7027 4.564116 GTGATGCGCATGGCTGGC 62.564 66.667 30.76 12.86 44.05 4.85
4915 7028 3.896133 GGTGATGCGCATGGCTGG 61.896 66.667 30.76 0.00 44.05 4.85
4916 7029 3.896133 GGGTGATGCGCATGGCTG 61.896 66.667 30.76 0.00 44.05 4.85
4917 7030 4.119363 AGGGTGATGCGCATGGCT 62.119 61.111 30.76 3.52 44.05 4.75
4918 7031 3.589881 GAGGGTGATGCGCATGGC 61.590 66.667 30.76 19.23 43.96 4.40
4919 7032 2.898920 AAGGAGGGTGATGCGCATGG 62.899 60.000 30.76 0.00 0.00 3.66
4920 7033 1.033746 AAAGGAGGGTGATGCGCATG 61.034 55.000 30.76 0.00 0.00 4.06
4921 7034 1.033746 CAAAGGAGGGTGATGCGCAT 61.034 55.000 25.66 25.66 0.00 4.73
4922 7035 1.675310 CAAAGGAGGGTGATGCGCA 60.675 57.895 14.96 14.96 0.00 6.09
4923 7036 3.056313 GCAAAGGAGGGTGATGCGC 62.056 63.158 0.00 0.00 0.00 6.09
4924 7037 2.409870 GGCAAAGGAGGGTGATGCG 61.410 63.158 0.00 0.00 37.88 4.73
4925 7038 2.409870 CGGCAAAGGAGGGTGATGC 61.410 63.158 0.00 0.00 36.31 3.91
4926 7039 2.409870 GCGGCAAAGGAGGGTGATG 61.410 63.158 0.00 0.00 0.00 3.07
4927 7040 2.044946 GCGGCAAAGGAGGGTGAT 60.045 61.111 0.00 0.00 0.00 3.06
4928 7041 2.748058 GAAGCGGCAAAGGAGGGTGA 62.748 60.000 1.45 0.00 0.00 4.02
4929 7042 2.282462 AAGCGGCAAAGGAGGGTG 60.282 61.111 1.45 0.00 0.00 4.61
4930 7043 2.034221 GAAGCGGCAAAGGAGGGT 59.966 61.111 1.45 0.00 0.00 4.34
4931 7044 2.751837 GGAAGCGGCAAAGGAGGG 60.752 66.667 1.45 0.00 0.00 4.30
4932 7045 2.751837 GGGAAGCGGCAAAGGAGG 60.752 66.667 1.45 0.00 0.00 4.30
4933 7046 3.127533 CGGGAAGCGGCAAAGGAG 61.128 66.667 1.45 0.00 0.00 3.69
4950 7063 3.869272 CTTCGTGCCCGCATCAGC 61.869 66.667 0.00 0.00 37.42 4.26
4951 7064 3.197790 CCTTCGTGCCCGCATCAG 61.198 66.667 0.00 0.00 0.00 2.90
4952 7065 4.015406 ACCTTCGTGCCCGCATCA 62.015 61.111 0.00 0.00 0.00 3.07
4953 7066 3.499737 CACCTTCGTGCCCGCATC 61.500 66.667 0.00 0.00 32.04 3.91
4954 7067 3.842925 AACACCTTCGTGCCCGCAT 62.843 57.895 0.00 0.00 44.40 4.73
4955 7068 4.555709 AACACCTTCGTGCCCGCA 62.556 61.111 0.00 0.00 44.40 5.69
4956 7069 3.249973 GAAACACCTTCGTGCCCGC 62.250 63.158 0.00 0.00 44.40 6.13
4957 7070 2.943653 GAAACACCTTCGTGCCCG 59.056 61.111 0.00 0.00 44.40 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.