Multiple sequence alignment - TraesCS4D01G090100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G090100 chr4D 100.000 2738 0 0 1 2738 65173967 65171230 0.000000e+00 5057.0
1 TraesCS4D01G090100 chr4D 95.045 222 11 0 2517 2738 476307873 476308094 1.560000e-92 350.0
2 TraesCS4D01G090100 chr4A 87.250 1200 81 26 861 2026 530891296 530892457 0.000000e+00 1303.0
3 TraesCS4D01G090100 chr4A 91.391 302 16 8 1291 1586 531109706 531109409 3.280000e-109 405.0
4 TraesCS4D01G090100 chr4A 96.313 217 8 0 2522 2738 670559212 670559428 9.320000e-95 357.0
5 TraesCS4D01G090100 chr4A 95.853 217 9 0 2522 2738 648770848 648771064 4.340000e-93 351.0
6 TraesCS4D01G090100 chr4A 82.979 376 38 9 127 502 530861280 530861629 1.580000e-82 316.0
7 TraesCS4D01G090100 chr4A 89.764 127 12 1 668 794 530891150 530891275 7.850000e-36 161.0
8 TraesCS4D01G090100 chr4A 88.430 121 12 1 6 126 530861119 530861237 7.900000e-31 145.0
9 TraesCS4D01G090100 chr4B 92.689 848 46 8 1184 2028 95718758 95717924 0.000000e+00 1208.0
10 TraesCS4D01G090100 chr4B 84.568 324 45 5 2197 2517 659332593 659332914 1.580000e-82 316.0
11 TraesCS4D01G090100 chr4B 77.273 506 36 38 668 1137 95719329 95718867 9.870000e-55 224.0
12 TraesCS4D01G090100 chr4B 93.506 77 2 2 1 74 95856136 95856060 8.010000e-21 111.0
13 TraesCS4D01G090100 chr4B 90.164 61 4 1 2126 2184 140917454 140917394 8.130000e-11 78.7
14 TraesCS4D01G090100 chr5A 86.074 517 51 14 1045 1556 125139041 125138541 1.120000e-148 536.0
15 TraesCS4D01G090100 chr2B 83.803 568 57 16 2200 2738 561571454 561570893 8.750000e-140 507.0
16 TraesCS4D01G090100 chr2B 95.853 217 9 0 2522 2738 452910639 452910423 4.340000e-93 351.0
17 TraesCS4D01G090100 chr5D 85.317 504 57 11 1057 1556 116748173 116748663 3.150000e-139 505.0
18 TraesCS4D01G090100 chr5D 87.500 320 36 4 2194 2511 556543615 556543932 1.550000e-97 366.0
19 TraesCS4D01G090100 chr5D 82.105 95 17 0 341 435 436770873 436770779 6.280000e-12 82.4
20 TraesCS4D01G090100 chr7B 96.313 217 8 0 2522 2738 739379758 739379542 9.320000e-95 357.0
21 TraesCS4D01G090100 chr6B 96.313 217 8 0 2522 2738 599981565 599981349 9.320000e-95 357.0
22 TraesCS4D01G090100 chr6B 86.997 323 33 5 2200 2517 182135 181817 3.350000e-94 355.0
23 TraesCS4D01G090100 chr3B 87.622 307 35 3 2214 2517 15983118 15982812 1.210000e-93 353.0
24 TraesCS4D01G090100 chr3B 87.829 304 32 4 2200 2499 804316681 804316379 4.340000e-93 351.0
25 TraesCS4D01G090100 chr3B 94.595 37 1 1 603 638 776468133 776468097 3.810000e-04 56.5
26 TraesCS4D01G090100 chr3D 86.687 323 35 7 2200 2517 16319669 16319988 4.340000e-93 351.0
27 TraesCS4D01G090100 chr7D 94.595 222 12 0 2517 2738 478799291 478799070 7.260000e-91 344.0
28 TraesCS4D01G090100 chr7D 86.486 74 8 2 2110 2181 556311135 556311062 2.260000e-11 80.5
29 TraesCS4D01G090100 chr1D 85.449 323 41 5 2194 2511 389422828 389423149 5.650000e-87 331.0
30 TraesCS4D01G090100 chr1D 83.380 361 48 9 2378 2735 89066233 89065882 9.460000e-85 324.0
31 TraesCS4D01G090100 chr2D 86.622 299 36 2 2221 2518 87817713 87817418 7.310000e-86 327.0
32 TraesCS4D01G090100 chr3A 84.783 322 44 4 2200 2517 21294243 21294563 4.400000e-83 318.0
33 TraesCS4D01G090100 chr2A 88.889 72 6 1 2109 2178 714336274 714336345 1.350000e-13 87.9
34 TraesCS4D01G090100 chr2A 88.889 63 5 2 2116 2176 431044665 431044603 2.920000e-10 76.8
35 TraesCS4D01G090100 chr6A 87.500 72 6 1 2108 2176 519204910 519204981 2.260000e-11 80.5
36 TraesCS4D01G090100 chrUn 88.136 59 6 1 2105 2162 101626279 101626337 4.890000e-08 69.4
37 TraesCS4D01G090100 chr5B 78.761 113 17 4 320 426 530923888 530923777 4.890000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G090100 chr4D 65171230 65173967 2737 True 5057.0 5057 100.0000 1 2738 1 chr4D.!!$R1 2737
1 TraesCS4D01G090100 chr4A 530891150 530892457 1307 False 732.0 1303 88.5070 668 2026 2 chr4A.!!$F4 1358
2 TraesCS4D01G090100 chr4A 530861119 530861629 510 False 230.5 316 85.7045 6 502 2 chr4A.!!$F3 496
3 TraesCS4D01G090100 chr4B 95717924 95719329 1405 True 716.0 1208 84.9810 668 2028 2 chr4B.!!$R3 1360
4 TraesCS4D01G090100 chr5A 125138541 125139041 500 True 536.0 536 86.0740 1045 1556 1 chr5A.!!$R1 511
5 TraesCS4D01G090100 chr2B 561570893 561571454 561 True 507.0 507 83.8030 2200 2738 1 chr2B.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1050 0.038526 CCGATGGGTAGTCCGTATGC 60.039 60.0 0.0 0.0 38.76 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2418 0.103208 CGACGCTAGAAGATTGGCCT 59.897 55.0 3.32 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.822073 AACTTTTTAAACCGAACAATGCTC 57.178 33.333 0.00 0.00 0.00 4.26
76 77 5.708230 ACCGAACAATGCTCTTTATTTACCA 59.292 36.000 0.00 0.00 0.00 3.25
83 84 8.680903 ACAATGCTCTTTATTTACCAGAATCAG 58.319 33.333 0.00 0.00 0.00 2.90
86 87 8.044060 TGCTCTTTATTTACCAGAATCAGTTG 57.956 34.615 0.00 0.00 0.00 3.16
100 101 8.186821 CCAGAATCAGTTGAAAATCTAATGTCC 58.813 37.037 0.00 0.00 0.00 4.02
106 107 8.792633 TCAGTTGAAAATCTAATGTCCGATTTT 58.207 29.630 9.06 9.06 46.64 1.82
110 111 7.703328 TGAAAATCTAATGTCCGATTTTAGGC 58.297 34.615 9.23 0.91 45.03 3.93
121 122 2.159572 CGATTTTAGGCCAACTCCAACG 60.160 50.000 5.01 0.00 0.00 4.10
143 186 1.375780 GCAAATTGCGGCCCAACAT 60.376 52.632 0.90 0.00 35.99 2.71
144 187 1.637478 GCAAATTGCGGCCCAACATG 61.637 55.000 0.90 10.97 35.99 3.21
145 188 0.320596 CAAATTGCGGCCCAACATGT 60.321 50.000 8.59 0.00 35.99 3.21
147 190 1.184322 AATTGCGGCCCAACATGTGA 61.184 50.000 0.00 0.00 35.99 3.58
149 192 2.359850 GCGGCCCAACATGTGAGA 60.360 61.111 0.00 0.00 0.00 3.27
163 206 1.668751 TGTGAGAGCAAACGGACAAAC 59.331 47.619 0.00 0.00 0.00 2.93
164 207 1.668751 GTGAGAGCAAACGGACAAACA 59.331 47.619 0.00 0.00 0.00 2.83
166 209 2.548057 TGAGAGCAAACGGACAAACATC 59.452 45.455 0.00 0.00 0.00 3.06
181 224 0.872388 ACATCTGTTTTTCGTCCGCC 59.128 50.000 0.00 0.00 0.00 6.13
183 226 1.535462 CATCTGTTTTTCGTCCGCCTT 59.465 47.619 0.00 0.00 0.00 4.35
196 239 2.452813 CGCCTTCGACCCATTCACG 61.453 63.158 0.00 0.00 38.10 4.35
197 240 1.079405 GCCTTCGACCCATTCACGA 60.079 57.895 0.00 0.00 0.00 4.35
200 243 0.739813 CTTCGACCCATTCACGACCC 60.740 60.000 0.00 0.00 35.82 4.46
201 244 1.473497 TTCGACCCATTCACGACCCA 61.473 55.000 0.00 0.00 35.82 4.51
202 245 1.004320 CGACCCATTCACGACCCAA 60.004 57.895 0.00 0.00 0.00 4.12
203 246 0.604243 CGACCCATTCACGACCCAAA 60.604 55.000 0.00 0.00 0.00 3.28
204 247 1.834188 GACCCATTCACGACCCAAAT 58.166 50.000 0.00 0.00 0.00 2.32
205 248 2.167662 GACCCATTCACGACCCAAATT 58.832 47.619 0.00 0.00 0.00 1.82
206 249 2.560981 GACCCATTCACGACCCAAATTT 59.439 45.455 0.00 0.00 0.00 1.82
214 257 1.813859 GACCCAAATTTAGGCCGCC 59.186 57.895 0.00 0.00 0.00 6.13
245 288 5.163581 CCATTGCTCGATTTGGAGAATCTTT 60.164 40.000 0.00 0.00 36.08 2.52
249 292 7.251704 TGCTCGATTTGGAGAATCTTTATTC 57.748 36.000 0.00 0.00 41.65 1.75
250 293 6.260936 TGCTCGATTTGGAGAATCTTTATTCC 59.739 38.462 0.00 0.00 42.20 3.01
254 297 4.503714 TTGGAGAATCTTTATTCCCGCT 57.496 40.909 0.00 0.00 42.20 5.52
261 304 2.322999 CTTTATTCCCGCTGCCACGC 62.323 60.000 0.00 0.00 0.00 5.34
282 325 1.734477 CACAGCTTCCGTGACTCCG 60.734 63.158 0.00 0.00 36.43 4.63
283 326 2.811317 CAGCTTCCGTGACTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
284 327 4.070552 AGCTTCCGTGACTCCGCC 62.071 66.667 0.00 0.00 0.00 6.13
286 329 3.744719 CTTCCGTGACTCCGCCGA 61.745 66.667 0.00 0.00 0.00 5.54
287 330 3.064987 CTTCCGTGACTCCGCCGAT 62.065 63.158 0.00 0.00 0.00 4.18
288 331 2.938539 CTTCCGTGACTCCGCCGATC 62.939 65.000 0.00 0.00 0.00 3.69
289 332 4.907034 CCGTGACTCCGCCGATCG 62.907 72.222 8.51 8.51 38.08 3.69
290 333 4.175489 CGTGACTCCGCCGATCGT 62.175 66.667 15.09 0.00 36.19 3.73
291 334 2.278013 GTGACTCCGCCGATCGTC 60.278 66.667 15.09 0.00 36.19 4.20
292 335 2.437895 TGACTCCGCCGATCGTCT 60.438 61.111 15.09 0.00 36.19 4.18
293 336 2.328639 GACTCCGCCGATCGTCTC 59.671 66.667 15.09 1.81 36.19 3.36
294 337 3.183776 GACTCCGCCGATCGTCTCC 62.184 68.421 15.09 0.00 36.19 3.71
295 338 3.967335 CTCCGCCGATCGTCTCCC 61.967 72.222 15.09 0.00 36.19 4.30
308 351 2.110967 TCTCCCCGCGACTCTAACG 61.111 63.158 8.23 0.00 0.00 3.18
323 366 2.186602 TAACGCCCGATTCCAAGCCA 62.187 55.000 0.00 0.00 0.00 4.75
371 414 0.320771 GAGCAAGACCGGCTTCTTCA 60.321 55.000 0.00 0.00 42.78 3.02
372 415 0.603975 AGCAAGACCGGCTTCTTCAC 60.604 55.000 0.00 0.00 38.81 3.18
377 420 3.423154 CCGGCTTCTTCACGGTGC 61.423 66.667 2.51 0.00 42.53 5.01
378 421 2.664851 CGGCTTCTTCACGGTGCA 60.665 61.111 2.51 0.00 0.00 4.57
392 435 2.035442 GTGCAGGAGAAGCCGTTCC 61.035 63.158 0.00 0.00 43.43 3.62
412 455 1.335689 CGGAACTTCGGTCTCGAGTTT 60.336 52.381 13.13 0.00 46.75 2.66
464 507 3.071167 ACCTTCAAGTAACCAGAGGTGTC 59.929 47.826 0.00 0.00 35.34 3.67
502 545 2.978010 CCGCTTGGTGTTTCGGCT 60.978 61.111 0.00 0.00 35.20 5.52
503 546 2.551912 CCGCTTGGTGTTTCGGCTT 61.552 57.895 0.00 0.00 35.20 4.35
504 547 1.358759 CGCTTGGTGTTTCGGCTTT 59.641 52.632 0.00 0.00 0.00 3.51
505 548 0.660300 CGCTTGGTGTTTCGGCTTTC 60.660 55.000 0.00 0.00 0.00 2.62
506 549 0.660300 GCTTGGTGTTTCGGCTTTCG 60.660 55.000 0.00 0.00 40.90 3.46
507 550 0.040425 CTTGGTGTTTCGGCTTTCGG 60.040 55.000 0.00 0.00 39.77 4.30
508 551 2.065906 TTGGTGTTTCGGCTTTCGGC 62.066 55.000 0.00 0.00 39.77 5.54
517 560 2.962253 GCTTTCGGCCGATCGAGG 60.962 66.667 31.56 16.21 40.42 4.63
529 572 4.710167 TCGAGGCACGAGTCCCGA 62.710 66.667 2.07 0.00 46.45 5.14
530 573 3.518998 CGAGGCACGAGTCCCGAT 61.519 66.667 0.00 0.00 45.77 4.18
531 574 2.184830 CGAGGCACGAGTCCCGATA 61.185 63.158 0.00 0.00 45.77 2.92
532 575 1.655329 GAGGCACGAGTCCCGATAG 59.345 63.158 0.00 0.00 41.76 2.08
548 591 4.592485 CGATAGGTAGTGGCAGAGATTT 57.408 45.455 0.00 0.00 0.00 2.17
549 592 4.302455 CGATAGGTAGTGGCAGAGATTTG 58.698 47.826 0.00 0.00 0.00 2.32
550 593 4.038042 CGATAGGTAGTGGCAGAGATTTGA 59.962 45.833 0.00 0.00 0.00 2.69
551 594 5.279206 CGATAGGTAGTGGCAGAGATTTGAT 60.279 44.000 0.00 0.00 0.00 2.57
552 595 4.148128 AGGTAGTGGCAGAGATTTGATG 57.852 45.455 0.00 0.00 0.00 3.07
553 596 3.118112 AGGTAGTGGCAGAGATTTGATGG 60.118 47.826 0.00 0.00 0.00 3.51
554 597 2.431954 AGTGGCAGAGATTTGATGGG 57.568 50.000 0.00 0.00 0.00 4.00
555 598 1.918262 AGTGGCAGAGATTTGATGGGA 59.082 47.619 0.00 0.00 0.00 4.37
556 599 2.019984 GTGGCAGAGATTTGATGGGAC 58.980 52.381 0.00 0.00 0.00 4.46
557 600 1.064463 TGGCAGAGATTTGATGGGACC 60.064 52.381 0.00 0.00 0.00 4.46
558 601 1.064463 GGCAGAGATTTGATGGGACCA 60.064 52.381 0.00 0.00 0.00 4.02
559 602 2.621407 GGCAGAGATTTGATGGGACCAA 60.621 50.000 0.00 0.00 0.00 3.67
560 603 2.686915 GCAGAGATTTGATGGGACCAAG 59.313 50.000 0.00 0.00 0.00 3.61
561 604 3.623203 GCAGAGATTTGATGGGACCAAGA 60.623 47.826 0.00 0.00 0.00 3.02
562 605 4.789807 CAGAGATTTGATGGGACCAAGAT 58.210 43.478 0.00 0.00 0.00 2.40
563 606 4.579340 CAGAGATTTGATGGGACCAAGATG 59.421 45.833 0.00 0.00 0.00 2.90
564 607 3.887716 GAGATTTGATGGGACCAAGATGG 59.112 47.826 0.00 0.00 45.02 3.51
565 608 2.530460 TTTGATGGGACCAAGATGGG 57.470 50.000 0.00 0.00 43.37 4.00
571 614 2.892425 GACCAAGATGGGCGAGCG 60.892 66.667 0.87 0.00 43.37 5.03
572 615 4.473520 ACCAAGATGGGCGAGCGG 62.474 66.667 0.87 0.00 43.37 5.52
573 616 4.161295 CCAAGATGGGCGAGCGGA 62.161 66.667 0.00 0.00 32.67 5.54
574 617 2.109799 CAAGATGGGCGAGCGGAT 59.890 61.111 0.00 0.00 0.00 4.18
575 618 1.958205 CAAGATGGGCGAGCGGATC 60.958 63.158 0.00 0.00 0.00 3.36
584 627 2.583593 GAGCGGATCGACACCAGC 60.584 66.667 10.42 12.65 0.00 4.85
585 628 4.148825 AGCGGATCGACACCAGCC 62.149 66.667 16.70 5.00 0.00 4.85
586 629 4.148825 GCGGATCGACACCAGCCT 62.149 66.667 10.42 0.00 0.00 4.58
587 630 2.782222 GCGGATCGACACCAGCCTA 61.782 63.158 10.42 0.00 0.00 3.93
588 631 1.813859 CGGATCGACACCAGCCTAA 59.186 57.895 10.42 0.00 0.00 2.69
589 632 0.249073 CGGATCGACACCAGCCTAAG 60.249 60.000 10.42 0.00 0.00 2.18
590 633 0.824759 GGATCGACACCAGCCTAAGT 59.175 55.000 5.72 0.00 0.00 2.24
591 634 1.207329 GGATCGACACCAGCCTAAGTT 59.793 52.381 5.72 0.00 0.00 2.66
592 635 2.541556 GATCGACACCAGCCTAAGTTC 58.458 52.381 0.00 0.00 0.00 3.01
593 636 1.334160 TCGACACCAGCCTAAGTTCA 58.666 50.000 0.00 0.00 0.00 3.18
594 637 1.272490 TCGACACCAGCCTAAGTTCAG 59.728 52.381 0.00 0.00 0.00 3.02
595 638 1.000955 CGACACCAGCCTAAGTTCAGT 59.999 52.381 0.00 0.00 0.00 3.41
596 639 2.230508 CGACACCAGCCTAAGTTCAGTA 59.769 50.000 0.00 0.00 0.00 2.74
597 640 3.586892 GACACCAGCCTAAGTTCAGTAC 58.413 50.000 0.00 0.00 0.00 2.73
598 641 2.969950 ACACCAGCCTAAGTTCAGTACA 59.030 45.455 0.00 0.00 0.00 2.90
599 642 3.389983 ACACCAGCCTAAGTTCAGTACAA 59.610 43.478 0.00 0.00 0.00 2.41
600 643 4.141574 ACACCAGCCTAAGTTCAGTACAAA 60.142 41.667 0.00 0.00 0.00 2.83
601 644 4.452455 CACCAGCCTAAGTTCAGTACAAAG 59.548 45.833 0.00 0.00 0.00 2.77
602 645 4.347000 ACCAGCCTAAGTTCAGTACAAAGA 59.653 41.667 0.00 0.00 0.00 2.52
603 646 4.932200 CCAGCCTAAGTTCAGTACAAAGAG 59.068 45.833 0.00 0.00 0.00 2.85
604 647 4.932200 CAGCCTAAGTTCAGTACAAAGAGG 59.068 45.833 0.00 0.00 0.00 3.69
605 648 4.020128 AGCCTAAGTTCAGTACAAAGAGGG 60.020 45.833 0.00 0.00 0.00 4.30
606 649 4.262938 GCCTAAGTTCAGTACAAAGAGGGT 60.263 45.833 0.00 0.00 0.00 4.34
607 650 5.745181 GCCTAAGTTCAGTACAAAGAGGGTT 60.745 44.000 0.00 0.00 0.00 4.11
608 651 6.296803 CCTAAGTTCAGTACAAAGAGGGTTT 58.703 40.000 0.00 0.00 0.00 3.27
609 652 6.771267 CCTAAGTTCAGTACAAAGAGGGTTTT 59.229 38.462 0.00 0.00 0.00 2.43
610 653 6.694877 AAGTTCAGTACAAAGAGGGTTTTC 57.305 37.500 0.00 0.00 0.00 2.29
611 654 5.131067 AGTTCAGTACAAAGAGGGTTTTCC 58.869 41.667 0.00 0.00 39.75 3.13
622 665 3.518992 AGGGTTTTCCTCCGATTTTCA 57.481 42.857 0.00 0.00 44.06 2.69
623 666 4.047627 AGGGTTTTCCTCCGATTTTCAT 57.952 40.909 0.00 0.00 44.06 2.57
624 667 4.416516 AGGGTTTTCCTCCGATTTTCATT 58.583 39.130 0.00 0.00 44.06 2.57
625 668 5.576128 AGGGTTTTCCTCCGATTTTCATTA 58.424 37.500 0.00 0.00 44.06 1.90
626 669 5.652452 AGGGTTTTCCTCCGATTTTCATTAG 59.348 40.000 0.00 0.00 44.06 1.73
627 670 5.650703 GGGTTTTCCTCCGATTTTCATTAGA 59.349 40.000 0.00 0.00 40.46 2.10
628 671 6.183360 GGGTTTTCCTCCGATTTTCATTAGAG 60.183 42.308 0.00 0.00 40.46 2.43
629 672 6.598064 GGTTTTCCTCCGATTTTCATTAGAGA 59.402 38.462 0.00 0.00 36.94 3.10
630 673 7.120726 GGTTTTCCTCCGATTTTCATTAGAGAA 59.879 37.037 0.00 0.00 36.94 2.87
631 674 8.512138 GTTTTCCTCCGATTTTCATTAGAGAAA 58.488 33.333 0.00 0.00 35.82 2.52
632 675 7.611213 TTCCTCCGATTTTCATTAGAGAAAC 57.389 36.000 0.00 0.00 37.24 2.78
633 676 6.113411 TCCTCCGATTTTCATTAGAGAAACC 58.887 40.000 0.00 0.00 37.24 3.27
634 677 5.880332 CCTCCGATTTTCATTAGAGAAACCA 59.120 40.000 0.00 0.00 37.24 3.67
635 678 6.037610 CCTCCGATTTTCATTAGAGAAACCAG 59.962 42.308 0.00 0.00 37.24 4.00
636 679 5.354234 TCCGATTTTCATTAGAGAAACCAGC 59.646 40.000 0.00 0.00 37.24 4.85
637 680 5.123820 CCGATTTTCATTAGAGAAACCAGCA 59.876 40.000 0.00 0.00 37.24 4.41
638 681 6.183360 CCGATTTTCATTAGAGAAACCAGCAT 60.183 38.462 0.00 0.00 37.24 3.79
639 682 6.690098 CGATTTTCATTAGAGAAACCAGCATG 59.310 38.462 0.00 0.00 37.24 4.06
640 683 7.414429 CGATTTTCATTAGAGAAACCAGCATGA 60.414 37.037 0.00 0.00 36.16 3.07
641 684 6.748333 TTTCATTAGAGAAACCAGCATGAG 57.252 37.500 0.00 0.00 32.98 2.90
642 685 5.426689 TCATTAGAGAAACCAGCATGAGT 57.573 39.130 0.00 0.00 39.69 3.41
643 686 5.809001 TCATTAGAGAAACCAGCATGAGTT 58.191 37.500 0.00 0.00 39.69 3.01
644 687 5.877012 TCATTAGAGAAACCAGCATGAGTTC 59.123 40.000 0.00 0.00 39.69 3.01
645 688 3.777106 AGAGAAACCAGCATGAGTTCA 57.223 42.857 0.00 0.00 39.69 3.18
646 689 3.672808 AGAGAAACCAGCATGAGTTCAG 58.327 45.455 0.00 0.00 39.69 3.02
647 690 3.072184 AGAGAAACCAGCATGAGTTCAGT 59.928 43.478 0.00 0.00 39.69 3.41
648 691 4.284490 AGAGAAACCAGCATGAGTTCAGTA 59.716 41.667 0.00 0.00 39.69 2.74
649 692 4.319177 AGAAACCAGCATGAGTTCAGTAC 58.681 43.478 0.00 0.00 39.69 2.73
650 693 3.769739 AACCAGCATGAGTTCAGTACA 57.230 42.857 0.00 0.00 39.69 2.90
651 694 3.769739 ACCAGCATGAGTTCAGTACAA 57.230 42.857 0.00 0.00 39.69 2.41
652 695 3.668447 ACCAGCATGAGTTCAGTACAAG 58.332 45.455 0.00 0.00 39.69 3.16
653 696 3.324846 ACCAGCATGAGTTCAGTACAAGA 59.675 43.478 0.00 0.00 39.69 3.02
654 697 3.931468 CCAGCATGAGTTCAGTACAAGAG 59.069 47.826 0.00 0.00 39.69 2.85
655 698 3.931468 CAGCATGAGTTCAGTACAAGAGG 59.069 47.826 0.00 0.00 39.69 3.69
656 699 2.675348 GCATGAGTTCAGTACAAGAGGC 59.325 50.000 0.00 0.00 0.00 4.70
657 700 3.866066 GCATGAGTTCAGTACAAGAGGCA 60.866 47.826 0.00 0.00 0.00 4.75
658 701 3.386768 TGAGTTCAGTACAAGAGGCAC 57.613 47.619 0.00 0.00 0.00 5.01
659 702 2.037251 TGAGTTCAGTACAAGAGGCACC 59.963 50.000 0.00 0.00 0.00 5.01
660 703 1.000955 AGTTCAGTACAAGAGGCACCG 59.999 52.381 0.00 0.00 0.00 4.94
661 704 0.320374 TTCAGTACAAGAGGCACCGG 59.680 55.000 0.00 0.00 0.00 5.28
662 705 1.079127 CAGTACAAGAGGCACCGGG 60.079 63.158 6.32 0.00 0.00 5.73
663 706 2.436115 GTACAAGAGGCACCGGGC 60.436 66.667 6.32 6.36 43.74 6.13
739 782 4.664150 TTCATTCCAAACTTTGTGTCCC 57.336 40.909 0.88 0.00 0.00 4.46
767 810 8.923270 ACTCTCCTGAAGATAGAAGGAAATTAG 58.077 37.037 0.00 0.00 39.59 1.73
769 812 8.700051 TCTCCTGAAGATAGAAGGAAATTAGTG 58.300 37.037 0.00 0.00 39.59 2.74
782 825 4.201920 GGAAATTAGTGCAAGGATTCCGTC 60.202 45.833 0.00 0.00 0.00 4.79
786 829 1.084370 GTGCAAGGATTCCGTCGGAG 61.084 60.000 14.79 2.69 31.21 4.63
802 845 5.335827 GTCGGAGATGATTAGTTGATTGC 57.664 43.478 0.00 0.00 40.67 3.56
803 846 5.053145 GTCGGAGATGATTAGTTGATTGCT 58.947 41.667 0.00 0.00 40.67 3.91
804 847 5.525378 GTCGGAGATGATTAGTTGATTGCTT 59.475 40.000 0.00 0.00 40.67 3.91
805 848 6.701841 GTCGGAGATGATTAGTTGATTGCTTA 59.298 38.462 0.00 0.00 40.67 3.09
806 849 6.701841 TCGGAGATGATTAGTTGATTGCTTAC 59.298 38.462 0.00 0.00 0.00 2.34
807 850 6.073548 CGGAGATGATTAGTTGATTGCTTACC 60.074 42.308 0.00 0.00 0.00 2.85
808 851 6.073548 GGAGATGATTAGTTGATTGCTTACCG 60.074 42.308 0.00 0.00 0.00 4.02
811 854 7.716998 AGATGATTAGTTGATTGCTTACCGAAT 59.283 33.333 0.00 0.00 0.00 3.34
814 857 9.337396 TGATTAGTTGATTGCTTACCGAATAAT 57.663 29.630 0.00 0.00 0.00 1.28
818 861 7.047891 AGTTGATTGCTTACCGAATAATCTCA 58.952 34.615 0.00 0.00 0.00 3.27
824 867 3.989104 CCGAATAATCTCACGGCCT 57.011 52.632 0.00 0.00 38.98 5.19
825 868 2.240493 CCGAATAATCTCACGGCCTT 57.760 50.000 0.00 0.00 38.98 4.35
826 869 3.380479 CCGAATAATCTCACGGCCTTA 57.620 47.619 0.00 0.00 38.98 2.69
844 887 7.496591 ACGGCCTTAATTAATTTCGTTGAGATA 59.503 33.333 5.91 0.00 0.00 1.98
875 918 4.263018 ACGGAGTACTTGGTAAGAAACC 57.737 45.455 0.00 0.00 45.51 3.27
896 943 5.229423 ACCACAAATCATCACGGAATTTTG 58.771 37.500 0.00 0.00 0.00 2.44
913 960 0.610174 TTGGCACGAGAGAGAGCATT 59.390 50.000 0.00 0.00 0.00 3.56
931 983 8.160434 AGAGCATTCATGGAAGGAGATTATAT 57.840 34.615 0.00 0.00 0.00 0.86
932 984 9.276791 AGAGCATTCATGGAAGGAGATTATATA 57.723 33.333 0.00 0.00 0.00 0.86
951 1003 1.757682 AAACGGAAGCACCAAACTCA 58.242 45.000 1.20 0.00 38.90 3.41
956 1008 2.159476 CGGAAGCACCAAACTCATGATG 60.159 50.000 0.00 0.00 38.90 3.07
963 1015 3.370978 CACCAAACTCATGATGGACGTAC 59.629 47.826 18.64 0.00 37.66 3.67
973 1025 0.679505 ATGGACGTACATCCGATGGG 59.320 55.000 7.68 4.40 42.24 4.00
976 1028 1.268899 GGACGTACATCCGATGGGTAG 59.731 57.143 13.00 4.07 33.83 3.18
985 1050 0.038526 CCGATGGGTAGTCCGTATGC 60.039 60.000 0.00 0.00 38.76 3.14
1042 1113 6.985117 AGCAATCTTGAAACATCAAAGCTTA 58.015 32.000 0.00 0.00 0.00 3.09
1082 1170 2.270205 CGTCCAAGGCCTGCATCT 59.730 61.111 5.69 0.00 0.00 2.90
1098 1186 0.179124 ATCTTCGTCCTGCTCTTCGC 60.179 55.000 0.00 0.00 39.77 4.70
1163 1327 1.007336 ACTTCGCCGTCGCAGTTTAG 61.007 55.000 0.00 0.00 39.00 1.85
1528 1692 0.099082 CGCTCGACTTCACCCTCTAC 59.901 60.000 0.00 0.00 0.00 2.59
1572 1736 3.302347 GAGACACGGTCCAGGCCAG 62.302 68.421 5.01 0.00 32.18 4.85
1579 1743 1.094785 CGGTCCAGGCCAGTATTTTG 58.905 55.000 5.01 0.00 0.00 2.44
1590 1759 3.558006 GCCAGTATTTTGGTTTTTGCGTT 59.442 39.130 0.00 0.00 40.49 4.84
1596 1765 2.285827 TTGGTTTTTGCGTTGGAGTG 57.714 45.000 0.00 0.00 0.00 3.51
1598 1767 0.874175 GGTTTTTGCGTTGGAGTGCC 60.874 55.000 0.00 0.00 0.00 5.01
1625 1795 2.535485 ATCGAATGCCCGCAGTTGGA 62.535 55.000 4.66 0.23 0.00 3.53
1645 1815 4.748409 GGCAACACCAAAATGCGT 57.252 50.000 0.00 0.00 40.94 5.24
1667 1837 5.062683 CGTCTGTTCCTTTCTGTGTATCATG 59.937 44.000 0.00 0.00 0.00 3.07
1694 1864 1.918262 TGCCTCCATTCTTCATGTCCT 59.082 47.619 0.00 0.00 0.00 3.85
1756 1926 5.258051 TCCCAATAAACTGGTATTGTGGTC 58.742 41.667 10.55 0.00 39.04 4.02
1760 1930 0.398696 AACTGGTATTGTGGTCGCCA 59.601 50.000 0.00 0.00 0.00 5.69
1775 1945 2.892374 TCGCCATGACATCACTTACAG 58.108 47.619 0.00 0.00 0.00 2.74
1776 1946 2.495669 TCGCCATGACATCACTTACAGA 59.504 45.455 0.00 0.00 0.00 3.41
1777 1947 3.056179 TCGCCATGACATCACTTACAGAA 60.056 43.478 0.00 0.00 0.00 3.02
1778 1948 3.873361 CGCCATGACATCACTTACAGAAT 59.127 43.478 0.00 0.00 0.00 2.40
1779 1949 5.049828 CGCCATGACATCACTTACAGAATA 58.950 41.667 0.00 0.00 0.00 1.75
1780 1950 5.050769 CGCCATGACATCACTTACAGAATAC 60.051 44.000 0.00 0.00 0.00 1.89
1858 2028 4.903638 TTCAACGATTTGAAGACGCTAG 57.096 40.909 0.00 0.00 45.08 3.42
1871 2041 0.680921 ACGCTAGCCACATTTGCCAT 60.681 50.000 9.66 0.00 0.00 4.40
1929 2099 4.637276 TGATCGGATGGTATTAATGCGTT 58.363 39.130 0.00 0.00 39.54 4.84
1930 2100 4.688879 TGATCGGATGGTATTAATGCGTTC 59.311 41.667 0.00 0.00 39.54 3.95
1936 2106 7.280428 TCGGATGGTATTAATGCGTTCTTAAAA 59.720 33.333 0.00 0.00 39.54 1.52
1996 2167 9.953697 AACTGTGAAAGTAGACGAGAATATATC 57.046 33.333 0.00 0.00 38.56 1.63
2064 2238 9.025041 AGATTTGCCCAAAATATTAGTATAGGC 57.975 33.333 0.00 0.00 38.64 3.93
2065 2239 8.719645 ATTTGCCCAAAATATTAGTATAGGCA 57.280 30.769 9.28 9.28 36.69 4.75
2066 2240 7.759489 TTGCCCAAAATATTAGTATAGGCAG 57.241 36.000 11.79 0.00 0.00 4.85
2067 2241 6.245408 TGCCCAAAATATTAGTATAGGCAGG 58.755 40.000 9.28 0.00 0.00 4.85
2068 2242 6.044989 TGCCCAAAATATTAGTATAGGCAGGA 59.955 38.462 9.28 0.00 0.00 3.86
2069 2243 6.599638 GCCCAAAATATTAGTATAGGCAGGAG 59.400 42.308 0.00 0.00 0.00 3.69
2070 2244 6.599638 CCCAAAATATTAGTATAGGCAGGAGC 59.400 42.308 0.00 0.00 41.10 4.70
2089 2263 3.964875 GCGGGCGGCACCATATTG 61.965 66.667 12.47 0.00 42.05 1.90
2090 2264 2.203139 CGGGCGGCACCATATTGA 60.203 61.111 12.47 0.00 42.05 2.57
2091 2265 1.600636 CGGGCGGCACCATATTGAT 60.601 57.895 12.47 0.00 42.05 2.57
2092 2266 0.321210 CGGGCGGCACCATATTGATA 60.321 55.000 12.47 0.00 42.05 2.15
2093 2267 1.165270 GGGCGGCACCATATTGATAC 58.835 55.000 12.47 0.00 42.05 2.24
2094 2268 0.796312 GGCGGCACCATATTGATACG 59.204 55.000 3.07 0.00 38.86 3.06
2095 2269 1.606994 GGCGGCACCATATTGATACGA 60.607 52.381 3.07 0.00 38.86 3.43
2096 2270 2.139917 GCGGCACCATATTGATACGAA 58.860 47.619 0.00 0.00 0.00 3.85
2097 2271 2.742053 GCGGCACCATATTGATACGAAT 59.258 45.455 0.00 0.00 0.00 3.34
2098 2272 3.188460 GCGGCACCATATTGATACGAATT 59.812 43.478 0.00 0.00 0.00 2.17
2099 2273 4.320202 GCGGCACCATATTGATACGAATTT 60.320 41.667 0.00 0.00 0.00 1.82
2100 2274 5.757886 CGGCACCATATTGATACGAATTTT 58.242 37.500 0.00 0.00 0.00 1.82
2101 2275 6.205784 CGGCACCATATTGATACGAATTTTT 58.794 36.000 0.00 0.00 0.00 1.94
2137 2311 9.632807 CTATCTCTGTATGGAAATACTTGTAGC 57.367 37.037 0.00 0.00 0.00 3.58
2138 2312 7.661536 TCTCTGTATGGAAATACTTGTAGCT 57.338 36.000 0.00 0.00 0.00 3.32
2139 2313 7.492524 TCTCTGTATGGAAATACTTGTAGCTG 58.507 38.462 0.00 0.00 0.00 4.24
2140 2314 6.582636 TCTGTATGGAAATACTTGTAGCTGG 58.417 40.000 0.00 0.00 0.00 4.85
2141 2315 5.680619 TGTATGGAAATACTTGTAGCTGGG 58.319 41.667 0.00 0.00 0.00 4.45
2142 2316 3.644966 TGGAAATACTTGTAGCTGGGG 57.355 47.619 0.00 0.00 0.00 4.96
2143 2317 2.241176 TGGAAATACTTGTAGCTGGGGG 59.759 50.000 0.00 0.00 0.00 5.40
2144 2318 2.508300 GGAAATACTTGTAGCTGGGGGA 59.492 50.000 0.00 0.00 0.00 4.81
2145 2319 3.053917 GGAAATACTTGTAGCTGGGGGAA 60.054 47.826 0.00 0.00 0.00 3.97
2146 2320 4.569015 GGAAATACTTGTAGCTGGGGGAAA 60.569 45.833 0.00 0.00 0.00 3.13
2147 2321 3.646736 ATACTTGTAGCTGGGGGAAAC 57.353 47.619 0.00 0.00 0.00 2.78
2148 2322 1.446016 ACTTGTAGCTGGGGGAAACT 58.554 50.000 0.00 0.00 0.00 2.66
2149 2323 2.627933 ACTTGTAGCTGGGGGAAACTA 58.372 47.619 0.00 0.00 0.00 2.24
2150 2324 2.572104 ACTTGTAGCTGGGGGAAACTAG 59.428 50.000 0.00 0.00 0.00 2.57
2151 2325 2.337359 TGTAGCTGGGGGAAACTAGT 57.663 50.000 0.00 0.00 0.00 2.57
2152 2326 3.478175 TGTAGCTGGGGGAAACTAGTA 57.522 47.619 0.00 0.00 0.00 1.82
2153 2327 3.102204 TGTAGCTGGGGGAAACTAGTAC 58.898 50.000 0.00 0.00 0.00 2.73
2154 2328 2.337359 AGCTGGGGGAAACTAGTACA 57.663 50.000 0.00 0.00 0.00 2.90
2155 2329 2.627933 AGCTGGGGGAAACTAGTACAA 58.372 47.619 0.00 0.00 0.00 2.41
2156 2330 2.572104 AGCTGGGGGAAACTAGTACAAG 59.428 50.000 0.00 0.00 0.00 3.16
2157 2331 2.305052 GCTGGGGGAAACTAGTACAAGT 59.695 50.000 0.00 0.00 0.00 3.16
2158 2332 3.244805 GCTGGGGGAAACTAGTACAAGTT 60.245 47.826 0.00 0.00 41.46 2.66
2159 2333 4.576879 CTGGGGGAAACTAGTACAAGTTC 58.423 47.826 0.00 0.00 38.76 3.01
2160 2334 3.328637 TGGGGGAAACTAGTACAAGTTCC 59.671 47.826 12.95 12.95 38.76 3.62
2161 2335 3.307975 GGGGGAAACTAGTACAAGTTCCC 60.308 52.174 25.26 25.26 40.44 3.97
2162 2336 3.328637 GGGGAAACTAGTACAAGTTCCCA 59.671 47.826 30.44 0.00 42.54 4.37
2163 2337 4.202493 GGGGAAACTAGTACAAGTTCCCAA 60.202 45.833 30.44 0.00 42.54 4.12
2164 2338 4.758674 GGGAAACTAGTACAAGTTCCCAAC 59.241 45.833 27.11 8.94 41.55 3.77
2165 2339 5.455755 GGGAAACTAGTACAAGTTCCCAACT 60.456 44.000 27.11 0.00 45.46 3.16
2166 2340 6.239686 GGGAAACTAGTACAAGTTCCCAACTA 60.240 42.308 27.11 0.00 41.91 2.24
2167 2341 7.219322 GGAAACTAGTACAAGTTCCCAACTAA 58.781 38.462 10.93 0.00 41.91 2.24
2168 2342 7.716560 GGAAACTAGTACAAGTTCCCAACTAAA 59.283 37.037 10.93 0.00 41.91 1.85
2169 2343 9.112725 GAAACTAGTACAAGTTCCCAACTAAAA 57.887 33.333 0.00 0.00 41.91 1.52
2170 2344 9.465199 AAACTAGTACAAGTTCCCAACTAAAAA 57.535 29.630 0.00 0.00 41.91 1.94
2171 2345 9.636789 AACTAGTACAAGTTCCCAACTAAAAAT 57.363 29.630 0.00 0.00 41.91 1.82
2178 2352 8.852135 ACAAGTTCCCAACTAAAAATATTTCGA 58.148 29.630 0.10 0.00 41.91 3.71
2179 2353 9.855021 CAAGTTCCCAACTAAAAATATTTCGAT 57.145 29.630 0.10 0.00 41.91 3.59
2186 2360 9.755064 CCAACTAAAAATATTTCGATATAGCCG 57.245 33.333 0.10 0.00 0.00 5.52
2189 2363 9.701098 ACTAAAAATATTTCGATATAGCCGTGA 57.299 29.630 0.10 0.00 0.00 4.35
2190 2364 9.953825 CTAAAAATATTTCGATATAGCCGTGAC 57.046 33.333 0.10 0.00 0.00 3.67
2191 2365 6.627690 AAATATTTCGATATAGCCGTGACG 57.372 37.500 0.00 0.00 0.00 4.35
2192 2366 3.637998 ATTTCGATATAGCCGTGACGT 57.362 42.857 3.64 0.00 0.00 4.34
2193 2367 2.675767 TTCGATATAGCCGTGACGTC 57.324 50.000 9.11 9.11 0.00 4.34
2194 2368 1.585297 TCGATATAGCCGTGACGTCA 58.415 50.000 15.76 15.76 0.00 4.35
2195 2369 1.529865 TCGATATAGCCGTGACGTCAG 59.470 52.381 20.73 9.67 0.00 3.51
2196 2370 1.529865 CGATATAGCCGTGACGTCAGA 59.470 52.381 20.73 2.38 0.00 3.27
2197 2371 2.159824 CGATATAGCCGTGACGTCAGAT 59.840 50.000 20.73 9.81 0.00 2.90
2198 2372 3.725305 CGATATAGCCGTGACGTCAGATC 60.725 52.174 20.73 10.49 0.00 2.75
2199 2373 0.308068 ATAGCCGTGACGTCAGATCG 59.692 55.000 20.73 18.68 0.00 3.69
2200 2374 1.022982 TAGCCGTGACGTCAGATCGT 61.023 55.000 20.73 6.93 46.88 3.73
2201 2375 1.443872 GCCGTGACGTCAGATCGTT 60.444 57.895 20.73 0.00 44.21 3.85
2202 2376 1.007336 GCCGTGACGTCAGATCGTTT 61.007 55.000 20.73 0.00 44.21 3.60
2203 2377 1.415374 CCGTGACGTCAGATCGTTTT 58.585 50.000 20.73 0.00 44.21 2.43
2204 2378 1.385743 CCGTGACGTCAGATCGTTTTC 59.614 52.381 20.73 2.48 44.21 2.29
2205 2379 2.316792 CGTGACGTCAGATCGTTTTCT 58.683 47.619 20.73 0.00 44.21 2.52
2206 2380 2.338813 CGTGACGTCAGATCGTTTTCTC 59.661 50.000 20.73 1.11 44.21 2.87
2207 2381 3.566523 GTGACGTCAGATCGTTTTCTCT 58.433 45.455 20.73 0.00 44.21 3.10
2208 2382 3.604627 GTGACGTCAGATCGTTTTCTCTC 59.395 47.826 20.73 0.00 44.21 3.20
2209 2383 3.502595 TGACGTCAGATCGTTTTCTCTCT 59.497 43.478 15.76 0.00 44.21 3.10
2210 2384 4.086199 ACGTCAGATCGTTTTCTCTCTC 57.914 45.455 0.00 0.00 41.37 3.20
2211 2385 3.754323 ACGTCAGATCGTTTTCTCTCTCT 59.246 43.478 0.00 0.00 41.37 3.10
2212 2386 4.216687 ACGTCAGATCGTTTTCTCTCTCTT 59.783 41.667 0.00 0.00 41.37 2.85
2224 2398 3.382803 CTCTCTTCCTGGCGGCTGG 62.383 68.421 26.40 26.40 0.00 4.85
2258 2432 2.926778 CCAGGAGGCCAATCTTCTAG 57.073 55.000 5.01 0.00 0.00 2.43
2261 2435 0.466124 GGAGGCCAATCTTCTAGCGT 59.534 55.000 5.01 0.00 0.00 5.07
2265 2439 1.201343 GCCAATCTTCTAGCGTCGTC 58.799 55.000 0.00 0.00 0.00 4.20
2289 2477 3.147595 CGGCTCCCTCGGTCATCA 61.148 66.667 0.00 0.00 0.00 3.07
2302 2490 1.160870 TCATCAGTGGTGAGGGGGT 59.839 57.895 0.68 0.00 35.11 4.95
2303 2491 0.909610 TCATCAGTGGTGAGGGGGTC 60.910 60.000 0.68 0.00 35.11 4.46
2304 2492 1.990060 ATCAGTGGTGAGGGGGTCG 60.990 63.158 0.00 0.00 35.66 4.79
2305 2493 4.394712 CAGTGGTGAGGGGGTCGC 62.395 72.222 0.00 0.00 34.63 5.19
2306 2494 4.640690 AGTGGTGAGGGGGTCGCT 62.641 66.667 0.00 0.00 35.82 4.93
2311 2500 2.285368 TGAGGGGGTCGCTGGATT 60.285 61.111 0.00 0.00 0.00 3.01
2317 2506 2.434185 GGTCGCTGGATTCACGCA 60.434 61.111 0.00 0.00 0.00 5.24
2318 2507 2.740714 GGTCGCTGGATTCACGCAC 61.741 63.158 0.00 0.00 0.00 5.34
2349 2538 7.093354 TCGTTTTTACTCTCTCGTAGTCTAGA 58.907 38.462 0.00 0.00 0.00 2.43
2358 2547 7.012610 ACTCTCTCGTAGTCTAGATTTTTAGGC 59.987 40.741 0.00 0.00 0.00 3.93
2369 2558 7.064728 GTCTAGATTTTTAGGCTGTTCATCGTT 59.935 37.037 0.00 0.00 0.00 3.85
2372 2561 6.863126 AGATTTTTAGGCTGTTCATCGTTTTG 59.137 34.615 0.00 0.00 0.00 2.44
2381 2570 0.886938 TCATCGTTTTGGCTTCGGCA 60.887 50.000 0.00 0.00 43.96 5.69
2392 2581 2.506217 TTCGGCAGCGACGATGAC 60.506 61.111 18.71 14.22 44.78 3.06
2393 2582 3.275832 TTCGGCAGCGACGATGACA 62.276 57.895 20.33 3.25 44.78 3.58
2394 2583 2.557059 TTCGGCAGCGACGATGACAT 62.557 55.000 20.33 0.00 44.78 3.06
2414 2603 6.818142 TGACATCGCTGAATAAAGATTCTTCA 59.182 34.615 0.00 0.00 41.87 3.02
2422 2611 8.558700 GCTGAATAAAGATTCTTCAGATCCTTC 58.441 37.037 17.33 5.48 45.57 3.46
2457 2646 1.488812 CGGTCTTATGGTTGGGGATGA 59.511 52.381 0.00 0.00 0.00 2.92
2460 2649 4.546674 GGTCTTATGGTTGGGGATGAATT 58.453 43.478 0.00 0.00 0.00 2.17
2467 2656 3.326297 TGGTTGGGGATGAATTTGGAAAC 59.674 43.478 0.00 0.00 0.00 2.78
2471 2660 3.181413 TGGGGATGAATTTGGAAACCAGA 60.181 43.478 0.00 0.00 33.81 3.86
2475 2664 4.524328 GGATGAATTTGGAAACCAGACTGT 59.476 41.667 0.93 0.00 33.81 3.55
2476 2665 5.011023 GGATGAATTTGGAAACCAGACTGTT 59.989 40.000 0.93 0.00 33.81 3.16
2478 2667 4.952957 TGAATTTGGAAACCAGACTGTTCA 59.047 37.500 0.93 0.00 33.81 3.18
2479 2668 5.420421 TGAATTTGGAAACCAGACTGTTCAA 59.580 36.000 0.93 0.00 33.81 2.69
2480 2669 5.930837 ATTTGGAAACCAGACTGTTCAAA 57.069 34.783 0.93 1.33 33.81 2.69
2482 2671 7.595819 ATTTGGAAACCAGACTGTTCAAATA 57.404 32.000 8.39 0.00 33.99 1.40
2483 2672 7.411486 TTTGGAAACCAGACTGTTCAAATAA 57.589 32.000 0.93 0.00 33.81 1.40
2484 2673 6.633500 TGGAAACCAGACTGTTCAAATAAG 57.367 37.500 0.93 0.00 0.00 1.73
2485 2674 5.534654 TGGAAACCAGACTGTTCAAATAAGG 59.465 40.000 0.93 0.00 0.00 2.69
2486 2675 5.768164 GGAAACCAGACTGTTCAAATAAGGA 59.232 40.000 0.93 0.00 0.00 3.36
2487 2676 6.434340 GGAAACCAGACTGTTCAAATAAGGAT 59.566 38.462 0.93 0.00 0.00 3.24
2490 2679 4.096984 CCAGACTGTTCAAATAAGGATGGC 59.903 45.833 0.93 0.00 0.00 4.40
2491 2680 3.941483 AGACTGTTCAAATAAGGATGGCG 59.059 43.478 0.00 0.00 0.00 5.69
2493 2682 3.440173 ACTGTTCAAATAAGGATGGCGTG 59.560 43.478 0.00 0.00 0.00 5.34
2494 2683 2.752354 TGTTCAAATAAGGATGGCGTGG 59.248 45.455 0.00 0.00 0.00 4.94
2495 2684 2.752903 GTTCAAATAAGGATGGCGTGGT 59.247 45.455 0.00 0.00 0.00 4.16
2496 2685 2.364632 TCAAATAAGGATGGCGTGGTG 58.635 47.619 0.00 0.00 0.00 4.17
2497 2686 1.405105 CAAATAAGGATGGCGTGGTGG 59.595 52.381 0.00 0.00 0.00 4.61
2498 2687 0.751643 AATAAGGATGGCGTGGTGGC 60.752 55.000 0.00 0.00 45.12 5.01
2610 2808 1.525077 GTGCTGGGTTCGTGGTTCA 60.525 57.895 0.00 0.00 0.00 3.18
2617 2815 1.339631 GGGTTCGTGGTTCATGGATGA 60.340 52.381 0.00 0.00 34.44 2.92
2652 2850 0.522915 CCTTCGGCGTCTTAGTCGTC 60.523 60.000 6.85 0.00 40.52 4.20
2669 2867 1.918293 TCGTGGGGTGCCAGATCTT 60.918 57.895 0.00 0.00 0.00 2.40
2675 2873 1.272147 GGGGTGCCAGATCTTGAGTTT 60.272 52.381 0.00 0.00 0.00 2.66
2714 2912 1.376812 GCCCCGGTCTGATTCGTTT 60.377 57.895 0.00 0.00 0.00 3.60
2719 2917 1.657094 CCGGTCTGATTCGTTTAACGG 59.343 52.381 17.59 1.04 42.81 4.44
2723 2921 3.424433 GGTCTGATTCGTTTAACGGCAAG 60.424 47.826 17.59 10.12 42.81 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.088272 GGTAAATAAAGAGCATTGTTCGGTTT 58.912 34.615 0.00 0.00 0.00 3.27
52 53 5.708230 TGGTAAATAAAGAGCATTGTTCGGT 59.292 36.000 0.00 0.00 0.00 4.69
61 62 7.882791 TCAACTGATTCTGGTAAATAAAGAGCA 59.117 33.333 0.00 0.00 0.00 4.26
76 77 7.824289 TCGGACATTAGATTTTCAACTGATTCT 59.176 33.333 0.00 0.00 0.00 2.40
96 97 2.617021 GGAGTTGGCCTAAAATCGGACA 60.617 50.000 3.32 0.00 37.92 4.02
100 101 2.159572 CGTTGGAGTTGGCCTAAAATCG 60.160 50.000 3.32 0.00 0.00 3.34
106 107 1.302192 GTGCGTTGGAGTTGGCCTA 60.302 57.895 3.32 0.00 0.00 3.93
107 108 2.594592 GTGCGTTGGAGTTGGCCT 60.595 61.111 3.32 0.00 0.00 5.19
110 111 2.329678 TTTGCGTGCGTTGGAGTTGG 62.330 55.000 0.00 0.00 0.00 3.77
136 179 1.069022 CGTTTGCTCTCACATGTTGGG 60.069 52.381 0.00 0.00 0.00 4.12
143 186 1.668751 GTTTGTCCGTTTGCTCTCACA 59.331 47.619 0.00 0.00 0.00 3.58
144 187 1.668751 TGTTTGTCCGTTTGCTCTCAC 59.331 47.619 0.00 0.00 0.00 3.51
145 188 2.031258 TGTTTGTCCGTTTGCTCTCA 57.969 45.000 0.00 0.00 0.00 3.27
147 190 2.549754 CAGATGTTTGTCCGTTTGCTCT 59.450 45.455 0.00 0.00 0.00 4.09
149 192 2.297701 ACAGATGTTTGTCCGTTTGCT 58.702 42.857 0.00 0.00 0.00 3.91
163 206 1.156736 AGGCGGACGAAAAACAGATG 58.843 50.000 0.00 0.00 0.00 2.90
164 207 1.804748 GAAGGCGGACGAAAAACAGAT 59.195 47.619 0.00 0.00 0.00 2.90
166 209 0.110823 CGAAGGCGGACGAAAAACAG 60.111 55.000 0.00 0.00 0.00 3.16
181 224 0.739813 GGGTCGTGAATGGGTCGAAG 60.740 60.000 0.00 0.00 35.44 3.79
183 226 1.473497 TTGGGTCGTGAATGGGTCGA 61.473 55.000 0.00 0.00 0.00 4.20
196 239 1.813859 GGCGGCCTAAATTTGGGTC 59.186 57.895 20.43 17.75 0.00 4.46
197 240 2.049767 CGGCGGCCTAAATTTGGGT 61.050 57.895 20.43 0.00 0.00 4.51
214 257 1.647545 AATCGAGCAATGGTGTGGCG 61.648 55.000 0.00 0.00 0.00 5.69
218 261 2.086869 CTCCAAATCGAGCAATGGTGT 58.913 47.619 0.00 0.00 34.50 4.16
223 266 7.814264 ATAAAGATTCTCCAAATCGAGCAAT 57.186 32.000 0.00 0.00 0.00 3.56
225 268 6.260936 GGAATAAAGATTCTCCAAATCGAGCA 59.739 38.462 0.00 0.00 41.21 4.26
226 269 6.293680 GGGAATAAAGATTCTCCAAATCGAGC 60.294 42.308 0.00 0.00 41.21 5.03
245 288 3.781307 AGCGTGGCAGCGGGAATA 61.781 61.111 10.56 0.00 43.00 1.75
261 304 1.287730 GAGTCACGGAAGCTGTGCAG 61.288 60.000 1.59 0.00 40.25 4.41
274 317 2.278013 GACGATCGGCGGAGTCAC 60.278 66.667 20.98 6.09 46.49 3.67
284 327 4.609247 GTCGCGGGGAGACGATCG 62.609 72.222 14.88 14.88 40.90 3.69
285 328 3.183776 GAGTCGCGGGGAGACGATC 62.184 68.421 6.13 0.00 42.97 3.69
286 329 2.321263 TAGAGTCGCGGGGAGACGAT 62.321 60.000 6.13 0.00 42.97 3.73
287 330 2.526450 TTAGAGTCGCGGGGAGACGA 62.526 60.000 6.13 0.00 42.97 4.20
288 331 2.110967 TTAGAGTCGCGGGGAGACG 61.111 63.158 6.13 0.00 42.97 4.18
289 332 1.432657 GTTAGAGTCGCGGGGAGAC 59.567 63.158 6.13 0.00 38.81 3.36
290 333 2.110967 CGTTAGAGTCGCGGGGAGA 61.111 63.158 6.13 0.00 0.00 3.71
291 334 2.408022 CGTTAGAGTCGCGGGGAG 59.592 66.667 6.13 0.00 0.00 4.30
292 335 3.818787 GCGTTAGAGTCGCGGGGA 61.819 66.667 6.13 0.00 43.94 4.81
308 351 2.361104 TGTGGCTTGGAATCGGGC 60.361 61.111 0.00 0.00 0.00 6.13
348 391 1.355066 GAAGCCGGTCTTGCTCTTCG 61.355 60.000 14.63 0.00 38.34 3.79
353 396 0.603975 GTGAAGAAGCCGGTCTTGCT 60.604 55.000 11.78 7.97 37.98 3.91
371 414 4.379243 CGGCTTCTCCTGCACCGT 62.379 66.667 1.75 0.00 39.05 4.83
392 435 0.240411 AACTCGAGACCGAAGTTCCG 59.760 55.000 21.68 0.00 45.04 4.30
400 443 1.337817 CGCACTGAAACTCGAGACCG 61.338 60.000 21.68 8.87 37.07 4.79
412 455 1.138883 GTCATAGCCGTCGCACTGA 59.861 57.895 0.00 0.00 37.52 3.41
485 528 2.070654 AAAGCCGAAACACCAAGCGG 62.071 55.000 0.00 0.00 46.14 5.52
512 555 2.598098 TATCGGGACTCGTGCCTCGA 62.598 60.000 0.00 0.00 46.83 4.04
513 556 2.119147 CTATCGGGACTCGTGCCTCG 62.119 65.000 6.05 0.00 39.13 4.63
514 557 1.655329 CTATCGGGACTCGTGCCTC 59.345 63.158 6.05 0.00 39.13 4.70
515 558 1.828660 CCTATCGGGACTCGTGCCT 60.829 63.158 6.05 0.00 39.13 4.75
516 559 0.820891 TACCTATCGGGACTCGTGCC 60.821 60.000 0.00 0.00 40.32 5.01
517 560 0.592148 CTACCTATCGGGACTCGTGC 59.408 60.000 0.00 0.00 40.32 5.34
518 561 1.602851 CACTACCTATCGGGACTCGTG 59.397 57.143 0.00 0.00 40.32 4.35
519 562 1.476471 CCACTACCTATCGGGACTCGT 60.476 57.143 0.00 0.00 40.32 4.18
520 563 1.236628 CCACTACCTATCGGGACTCG 58.763 60.000 0.00 0.00 38.76 4.18
521 564 0.960286 GCCACTACCTATCGGGACTC 59.040 60.000 0.00 0.00 38.76 3.36
522 565 0.260816 TGCCACTACCTATCGGGACT 59.739 55.000 0.00 0.00 38.76 3.85
523 566 0.674534 CTGCCACTACCTATCGGGAC 59.325 60.000 0.00 0.00 38.76 4.46
524 567 0.554305 TCTGCCACTACCTATCGGGA 59.446 55.000 0.00 0.00 38.76 5.14
525 568 0.962489 CTCTGCCACTACCTATCGGG 59.038 60.000 0.00 0.00 41.89 5.14
526 569 1.982660 TCTCTGCCACTACCTATCGG 58.017 55.000 0.00 0.00 0.00 4.18
527 570 4.038042 TCAAATCTCTGCCACTACCTATCG 59.962 45.833 0.00 0.00 0.00 2.92
528 571 5.537300 TCAAATCTCTGCCACTACCTATC 57.463 43.478 0.00 0.00 0.00 2.08
529 572 5.221803 CCATCAAATCTCTGCCACTACCTAT 60.222 44.000 0.00 0.00 0.00 2.57
530 573 4.101585 CCATCAAATCTCTGCCACTACCTA 59.898 45.833 0.00 0.00 0.00 3.08
531 574 3.118112 CCATCAAATCTCTGCCACTACCT 60.118 47.826 0.00 0.00 0.00 3.08
532 575 3.209410 CCATCAAATCTCTGCCACTACC 58.791 50.000 0.00 0.00 0.00 3.18
533 576 3.118261 TCCCATCAAATCTCTGCCACTAC 60.118 47.826 0.00 0.00 0.00 2.73
534 577 3.114606 TCCCATCAAATCTCTGCCACTA 58.885 45.455 0.00 0.00 0.00 2.74
535 578 1.918262 TCCCATCAAATCTCTGCCACT 59.082 47.619 0.00 0.00 0.00 4.00
536 579 2.019984 GTCCCATCAAATCTCTGCCAC 58.980 52.381 0.00 0.00 0.00 5.01
537 580 1.064463 GGTCCCATCAAATCTCTGCCA 60.064 52.381 0.00 0.00 0.00 4.92
538 581 1.064463 TGGTCCCATCAAATCTCTGCC 60.064 52.381 0.00 0.00 0.00 4.85
539 582 2.425143 TGGTCCCATCAAATCTCTGC 57.575 50.000 0.00 0.00 0.00 4.26
540 583 4.226427 TCTTGGTCCCATCAAATCTCTG 57.774 45.455 0.00 0.00 0.00 3.35
541 584 4.386088 CCATCTTGGTCCCATCAAATCTCT 60.386 45.833 0.00 0.00 31.35 3.10
542 585 3.887716 CCATCTTGGTCCCATCAAATCTC 59.112 47.826 0.00 0.00 31.35 2.75
543 586 3.373438 CCCATCTTGGTCCCATCAAATCT 60.373 47.826 0.00 0.00 35.17 2.40
544 587 2.961062 CCCATCTTGGTCCCATCAAATC 59.039 50.000 0.00 0.00 35.17 2.17
545 588 2.956385 GCCCATCTTGGTCCCATCAAAT 60.956 50.000 0.00 0.00 35.17 2.32
546 589 1.619432 GCCCATCTTGGTCCCATCAAA 60.619 52.381 0.00 0.00 35.17 2.69
547 590 0.033208 GCCCATCTTGGTCCCATCAA 60.033 55.000 0.00 0.00 35.17 2.57
548 591 1.614711 GCCCATCTTGGTCCCATCA 59.385 57.895 0.00 0.00 35.17 3.07
549 592 1.526917 CGCCCATCTTGGTCCCATC 60.527 63.158 0.00 0.00 35.17 3.51
550 593 1.987807 CTCGCCCATCTTGGTCCCAT 61.988 60.000 0.00 0.00 35.17 4.00
551 594 2.609299 TCGCCCATCTTGGTCCCA 60.609 61.111 0.00 0.00 35.17 4.37
552 595 2.190578 CTCGCCCATCTTGGTCCC 59.809 66.667 0.00 0.00 35.17 4.46
553 596 2.514824 GCTCGCCCATCTTGGTCC 60.515 66.667 0.00 0.00 35.17 4.46
554 597 2.892425 CGCTCGCCCATCTTGGTC 60.892 66.667 0.00 0.00 35.17 4.02
555 598 4.473520 CCGCTCGCCCATCTTGGT 62.474 66.667 0.00 0.00 35.17 3.67
556 599 3.466791 ATCCGCTCGCCCATCTTGG 62.467 63.158 0.00 0.00 37.25 3.61
557 600 1.958205 GATCCGCTCGCCCATCTTG 60.958 63.158 0.00 0.00 0.00 3.02
558 601 2.423446 GATCCGCTCGCCCATCTT 59.577 61.111 0.00 0.00 0.00 2.40
559 602 3.983494 CGATCCGCTCGCCCATCT 61.983 66.667 0.00 0.00 41.14 2.90
567 610 2.583593 GCTGGTGTCGATCCGCTC 60.584 66.667 13.97 1.94 0.00 5.03
568 611 4.148825 GGCTGGTGTCGATCCGCT 62.149 66.667 17.59 0.00 0.00 5.52
569 612 2.292794 TTAGGCTGGTGTCGATCCGC 62.293 60.000 0.00 13.35 0.00 5.54
570 613 0.249073 CTTAGGCTGGTGTCGATCCG 60.249 60.000 0.00 0.00 0.00 4.18
571 614 0.824759 ACTTAGGCTGGTGTCGATCC 59.175 55.000 0.00 0.00 0.00 3.36
572 615 2.094182 TGAACTTAGGCTGGTGTCGATC 60.094 50.000 0.00 0.00 0.00 3.69
573 616 1.899814 TGAACTTAGGCTGGTGTCGAT 59.100 47.619 0.00 0.00 0.00 3.59
574 617 1.272490 CTGAACTTAGGCTGGTGTCGA 59.728 52.381 0.00 0.00 0.00 4.20
575 618 1.000955 ACTGAACTTAGGCTGGTGTCG 59.999 52.381 0.00 0.00 0.00 4.35
576 619 2.841442 ACTGAACTTAGGCTGGTGTC 57.159 50.000 0.00 0.00 0.00 3.67
577 620 2.969950 TGTACTGAACTTAGGCTGGTGT 59.030 45.455 0.00 0.00 0.00 4.16
578 621 3.678056 TGTACTGAACTTAGGCTGGTG 57.322 47.619 0.00 0.00 0.00 4.17
579 622 4.347000 TCTTTGTACTGAACTTAGGCTGGT 59.653 41.667 0.00 0.00 0.00 4.00
580 623 4.894784 TCTTTGTACTGAACTTAGGCTGG 58.105 43.478 0.00 0.00 0.00 4.85
581 624 4.932200 CCTCTTTGTACTGAACTTAGGCTG 59.068 45.833 0.00 0.00 0.00 4.85
582 625 4.020128 CCCTCTTTGTACTGAACTTAGGCT 60.020 45.833 0.00 0.00 0.00 4.58
583 626 4.254492 CCCTCTTTGTACTGAACTTAGGC 58.746 47.826 0.00 0.00 0.00 3.93
584 627 5.485209 ACCCTCTTTGTACTGAACTTAGG 57.515 43.478 0.00 0.00 0.00 2.69
585 628 7.041303 GGAAAACCCTCTTTGTACTGAACTTAG 60.041 40.741 0.00 0.00 0.00 2.18
586 629 6.769341 GGAAAACCCTCTTTGTACTGAACTTA 59.231 38.462 0.00 0.00 0.00 2.24
587 630 5.593095 GGAAAACCCTCTTTGTACTGAACTT 59.407 40.000 0.00 0.00 0.00 2.66
588 631 5.104067 AGGAAAACCCTCTTTGTACTGAACT 60.104 40.000 0.00 0.00 43.31 3.01
589 632 5.131067 AGGAAAACCCTCTTTGTACTGAAC 58.869 41.667 0.00 0.00 43.31 3.18
590 633 5.382664 AGGAAAACCCTCTTTGTACTGAA 57.617 39.130 0.00 0.00 43.31 3.02
603 646 4.801330 AATGAAAATCGGAGGAAAACCC 57.199 40.909 0.00 0.00 0.00 4.11
604 647 6.598064 TCTCTAATGAAAATCGGAGGAAAACC 59.402 38.462 0.00 0.00 0.00 3.27
605 648 7.611213 TCTCTAATGAAAATCGGAGGAAAAC 57.389 36.000 0.00 0.00 0.00 2.43
606 649 8.512138 GTTTCTCTAATGAAAATCGGAGGAAAA 58.488 33.333 0.00 0.00 37.63 2.29
607 650 7.120726 GGTTTCTCTAATGAAAATCGGAGGAAA 59.879 37.037 0.00 0.00 37.63 3.13
608 651 6.598064 GGTTTCTCTAATGAAAATCGGAGGAA 59.402 38.462 0.00 0.00 37.63 3.36
609 652 6.113411 GGTTTCTCTAATGAAAATCGGAGGA 58.887 40.000 0.00 0.00 37.63 3.71
610 653 5.880332 TGGTTTCTCTAATGAAAATCGGAGG 59.120 40.000 0.00 0.00 37.63 4.30
611 654 6.457528 GCTGGTTTCTCTAATGAAAATCGGAG 60.458 42.308 0.00 0.00 37.63 4.63
612 655 5.354234 GCTGGTTTCTCTAATGAAAATCGGA 59.646 40.000 0.00 0.00 37.63 4.55
613 656 5.123820 TGCTGGTTTCTCTAATGAAAATCGG 59.876 40.000 0.00 0.00 37.63 4.18
614 657 6.182039 TGCTGGTTTCTCTAATGAAAATCG 57.818 37.500 0.00 0.00 37.63 3.34
615 658 7.765307 TCATGCTGGTTTCTCTAATGAAAATC 58.235 34.615 0.00 0.00 37.63 2.17
616 659 7.395489 ACTCATGCTGGTTTCTCTAATGAAAAT 59.605 33.333 0.00 0.00 37.63 1.82
617 660 6.716628 ACTCATGCTGGTTTCTCTAATGAAAA 59.283 34.615 0.00 0.00 37.63 2.29
618 661 6.240894 ACTCATGCTGGTTTCTCTAATGAAA 58.759 36.000 0.00 0.00 34.05 2.69
619 662 5.809001 ACTCATGCTGGTTTCTCTAATGAA 58.191 37.500 0.00 0.00 0.00 2.57
620 663 5.426689 ACTCATGCTGGTTTCTCTAATGA 57.573 39.130 0.00 0.00 0.00 2.57
621 664 5.645067 TGAACTCATGCTGGTTTCTCTAATG 59.355 40.000 0.00 0.00 0.00 1.90
622 665 5.809001 TGAACTCATGCTGGTTTCTCTAAT 58.191 37.500 0.00 0.00 0.00 1.73
623 666 5.221722 ACTGAACTCATGCTGGTTTCTCTAA 60.222 40.000 0.00 0.00 0.00 2.10
624 667 4.284490 ACTGAACTCATGCTGGTTTCTCTA 59.716 41.667 0.00 0.00 0.00 2.43
625 668 3.072184 ACTGAACTCATGCTGGTTTCTCT 59.928 43.478 0.00 0.00 0.00 3.10
626 669 3.406764 ACTGAACTCATGCTGGTTTCTC 58.593 45.455 0.00 0.00 0.00 2.87
627 670 3.498774 ACTGAACTCATGCTGGTTTCT 57.501 42.857 0.00 0.00 0.00 2.52
628 671 4.065088 TGTACTGAACTCATGCTGGTTTC 58.935 43.478 0.00 0.00 0.00 2.78
629 672 4.085357 TGTACTGAACTCATGCTGGTTT 57.915 40.909 0.00 0.00 0.00 3.27
630 673 3.769739 TGTACTGAACTCATGCTGGTT 57.230 42.857 0.00 0.00 0.00 3.67
631 674 3.324846 TCTTGTACTGAACTCATGCTGGT 59.675 43.478 0.00 0.00 0.00 4.00
632 675 3.930336 TCTTGTACTGAACTCATGCTGG 58.070 45.455 0.00 0.00 0.00 4.85
633 676 3.931468 CCTCTTGTACTGAACTCATGCTG 59.069 47.826 0.00 0.00 0.00 4.41
634 677 3.618507 GCCTCTTGTACTGAACTCATGCT 60.619 47.826 0.00 0.00 0.00 3.79
635 678 2.675348 GCCTCTTGTACTGAACTCATGC 59.325 50.000 0.00 0.00 0.00 4.06
636 679 3.681897 GTGCCTCTTGTACTGAACTCATG 59.318 47.826 0.00 0.00 0.00 3.07
637 680 3.307059 GGTGCCTCTTGTACTGAACTCAT 60.307 47.826 0.00 0.00 0.00 2.90
638 681 2.037251 GGTGCCTCTTGTACTGAACTCA 59.963 50.000 0.00 0.00 0.00 3.41
639 682 2.689646 GGTGCCTCTTGTACTGAACTC 58.310 52.381 0.00 0.00 0.00 3.01
640 683 1.000955 CGGTGCCTCTTGTACTGAACT 59.999 52.381 0.00 0.00 38.12 3.01
641 684 1.429463 CGGTGCCTCTTGTACTGAAC 58.571 55.000 0.00 0.00 38.12 3.18
642 685 0.320374 CCGGTGCCTCTTGTACTGAA 59.680 55.000 0.00 0.00 38.12 3.02
643 686 1.541310 CCCGGTGCCTCTTGTACTGA 61.541 60.000 0.00 0.00 38.12 3.41
644 687 1.079127 CCCGGTGCCTCTTGTACTG 60.079 63.158 0.00 0.00 35.86 2.74
645 688 2.955881 GCCCGGTGCCTCTTGTACT 61.956 63.158 0.00 0.00 0.00 2.73
646 689 2.436115 GCCCGGTGCCTCTTGTAC 60.436 66.667 0.00 0.00 0.00 2.90
647 690 0.978667 TATGCCCGGTGCCTCTTGTA 60.979 55.000 11.72 0.00 40.16 2.41
648 691 1.635817 ATATGCCCGGTGCCTCTTGT 61.636 55.000 11.72 0.00 40.16 3.16
649 692 0.396435 TATATGCCCGGTGCCTCTTG 59.604 55.000 11.72 0.00 40.16 3.02
650 693 1.362224 ATATATGCCCGGTGCCTCTT 58.638 50.000 11.72 0.00 40.16 2.85
651 694 1.362224 AATATATGCCCGGTGCCTCT 58.638 50.000 11.72 0.00 40.16 3.69
652 695 1.812571 CAAATATATGCCCGGTGCCTC 59.187 52.381 11.72 0.00 40.16 4.70
653 696 1.144913 ACAAATATATGCCCGGTGCCT 59.855 47.619 11.72 5.39 40.16 4.75
654 697 1.269448 CACAAATATATGCCCGGTGCC 59.731 52.381 11.72 0.00 40.16 5.01
655 698 2.031157 GTCACAAATATATGCCCGGTGC 60.031 50.000 0.00 4.04 41.77 5.01
656 699 3.476552 AGTCACAAATATATGCCCGGTG 58.523 45.455 0.00 0.00 0.00 4.94
657 700 3.496160 GGAGTCACAAATATATGCCCGGT 60.496 47.826 0.00 0.00 0.00 5.28
658 701 3.074412 GGAGTCACAAATATATGCCCGG 58.926 50.000 0.00 0.00 0.00 5.73
659 702 3.738982 TGGAGTCACAAATATATGCCCG 58.261 45.455 0.00 0.00 0.00 6.13
660 703 6.655078 ATTTGGAGTCACAAATATATGCCC 57.345 37.500 14.32 0.00 46.18 5.36
732 775 2.378886 TCTTCAGGAGAGTAGGGACACA 59.621 50.000 0.00 0.00 0.00 3.72
739 782 7.889873 TTTCCTTCTATCTTCAGGAGAGTAG 57.110 40.000 0.00 0.00 38.00 2.57
767 810 1.079405 TCCGACGGAATCCTTGCAC 60.079 57.895 15.79 0.00 0.00 4.57
769 812 0.105039 ATCTCCGACGGAATCCTTGC 59.895 55.000 18.93 0.00 0.00 4.01
782 825 5.998454 AAGCAATCAACTAATCATCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
786 829 6.844696 TCGGTAAGCAATCAACTAATCATC 57.155 37.500 0.00 0.00 0.00 2.92
790 833 9.561069 AGATTATTCGGTAAGCAATCAACTAAT 57.439 29.630 0.00 0.00 31.11 1.73
791 834 8.958119 AGATTATTCGGTAAGCAATCAACTAA 57.042 30.769 0.00 0.00 31.11 2.24
792 835 8.201464 TGAGATTATTCGGTAAGCAATCAACTA 58.799 33.333 0.00 0.00 31.11 2.24
793 836 7.011482 GTGAGATTATTCGGTAAGCAATCAACT 59.989 37.037 0.00 0.00 31.11 3.16
794 837 7.126398 GTGAGATTATTCGGTAAGCAATCAAC 58.874 38.462 0.00 0.00 31.11 3.18
795 838 6.019075 CGTGAGATTATTCGGTAAGCAATCAA 60.019 38.462 0.00 0.00 31.11 2.57
796 839 5.462068 CGTGAGATTATTCGGTAAGCAATCA 59.538 40.000 0.00 0.00 31.11 2.57
797 840 5.107453 CCGTGAGATTATTCGGTAAGCAATC 60.107 44.000 0.00 0.00 38.45 2.67
798 841 4.750098 CCGTGAGATTATTCGGTAAGCAAT 59.250 41.667 0.00 0.00 38.45 3.56
799 842 4.116961 CCGTGAGATTATTCGGTAAGCAA 58.883 43.478 0.00 0.00 38.45 3.91
800 843 3.713288 CCGTGAGATTATTCGGTAAGCA 58.287 45.455 0.00 0.00 38.45 3.91
801 844 2.475487 GCCGTGAGATTATTCGGTAAGC 59.525 50.000 0.00 0.00 44.07 3.09
802 845 3.057734 GGCCGTGAGATTATTCGGTAAG 58.942 50.000 0.00 0.00 44.07 2.34
803 846 2.696707 AGGCCGTGAGATTATTCGGTAA 59.303 45.455 0.00 0.00 44.07 2.85
804 847 2.313317 AGGCCGTGAGATTATTCGGTA 58.687 47.619 0.00 0.00 44.07 4.02
805 848 1.120530 AGGCCGTGAGATTATTCGGT 58.879 50.000 0.00 0.00 44.07 4.69
806 849 2.240493 AAGGCCGTGAGATTATTCGG 57.760 50.000 0.00 0.00 44.86 4.30
807 850 5.924475 AATTAAGGCCGTGAGATTATTCG 57.076 39.130 0.00 0.00 0.00 3.34
811 854 7.496591 ACGAAATTAATTAAGGCCGTGAGATTA 59.503 33.333 15.81 1.01 0.00 1.75
814 857 5.180271 ACGAAATTAATTAAGGCCGTGAGA 58.820 37.500 15.81 0.00 0.00 3.27
818 861 5.644636 TCTCAACGAAATTAATTAAGGCCGT 59.355 36.000 0.01 12.66 0.00 5.68
849 892 7.148000 GGTTTCTTACCAAGTACTCCGTACTAT 60.148 40.741 7.06 0.44 45.20 2.12
850 893 6.151144 GGTTTCTTACCAAGTACTCCGTACTA 59.849 42.308 7.06 0.00 45.20 1.82
851 894 5.047731 GGTTTCTTACCAAGTACTCCGTACT 60.048 44.000 0.00 1.03 46.92 2.73
852 895 5.164233 GGTTTCTTACCAAGTACTCCGTAC 58.836 45.833 0.00 0.00 46.92 3.67
853 896 5.391312 GGTTTCTTACCAAGTACTCCGTA 57.609 43.478 0.00 0.00 46.92 4.02
854 897 4.263018 GGTTTCTTACCAAGTACTCCGT 57.737 45.455 0.00 0.00 46.92 4.69
875 918 4.091800 GCCAAAATTCCGTGATGATTTGTG 59.908 41.667 0.00 0.00 0.00 3.33
876 923 4.244862 GCCAAAATTCCGTGATGATTTGT 58.755 39.130 0.00 0.00 0.00 2.83
885 932 0.871722 TCTCGTGCCAAAATTCCGTG 59.128 50.000 0.00 0.00 0.00 4.94
896 943 0.174389 TGAATGCTCTCTCTCGTGCC 59.826 55.000 0.00 0.00 0.00 5.01
913 960 8.430573 TCCGTTTATATAATCTCCTTCCATGA 57.569 34.615 0.00 0.00 0.00 3.07
931 983 2.920524 TGAGTTTGGTGCTTCCGTTTA 58.079 42.857 0.00 0.00 39.52 2.01
932 984 1.757682 TGAGTTTGGTGCTTCCGTTT 58.242 45.000 0.00 0.00 39.52 3.60
951 1003 2.029020 CCATCGGATGTACGTCCATCAT 60.029 50.000 29.27 16.80 42.47 2.45
956 1008 1.268899 CTACCCATCGGATGTACGTCC 59.731 57.143 22.32 22.32 34.94 4.79
963 1015 1.612676 TACGGACTACCCATCGGATG 58.387 55.000 11.07 11.07 34.14 3.51
973 1025 1.068588 TGGCTCATGCATACGGACTAC 59.931 52.381 0.00 0.00 41.91 2.73
976 1028 1.502163 GCTGGCTCATGCATACGGAC 61.502 60.000 0.00 0.00 41.91 4.79
1025 1094 9.410556 GCTAAGAAATAAGCTTTGATGTTTCAA 57.589 29.630 3.20 1.45 40.09 2.69
1042 1113 4.880696 GTCATGGCTGAAGAGCTAAGAAAT 59.119 41.667 0.00 0.00 45.44 2.17
1064 1152 2.045926 GATGCAGGCCTTGGACGT 60.046 61.111 0.00 0.00 0.00 4.34
1137 1225 2.653890 TGCGACGGCGAAGTATTATAC 58.346 47.619 18.90 0.00 44.10 1.47
1163 1327 2.034685 TCCAAGGATCGATCGATGTGAC 59.965 50.000 33.86 19.10 34.60 3.67
1528 1692 3.864686 CATTCCGGCGAGGCGTTG 61.865 66.667 9.30 8.52 40.77 4.10
1572 1736 4.806775 ACTCCAACGCAAAAACCAAAATAC 59.193 37.500 0.00 0.00 0.00 1.89
1579 1743 0.874175 GGCACTCCAACGCAAAAACC 60.874 55.000 0.00 0.00 0.00 3.27
1590 1759 3.973206 TCGATAAAAGAAGGCACTCCA 57.027 42.857 0.00 0.00 38.49 3.86
1598 1767 2.354510 TGCGGGCATTCGATAAAAGAAG 59.645 45.455 0.00 0.00 0.00 2.85
1645 1815 6.014242 AGACATGATACACAGAAAGGAACAGA 60.014 38.462 0.00 0.00 0.00 3.41
1667 1837 3.614092 TGAAGAATGGAGGCAATGAGAC 58.386 45.455 0.00 0.00 0.00 3.36
1694 1864 0.037590 ATTGCTTGGGTGCGTAGGAA 59.962 50.000 0.00 0.00 35.36 3.36
1756 1926 2.892374 TCTGTAAGTGATGTCATGGCG 58.108 47.619 0.00 0.00 33.76 5.69
1760 1930 7.423844 TCCTGTATTCTGTAAGTGATGTCAT 57.576 36.000 0.00 0.00 33.76 3.06
1764 1934 8.722480 TTTCATCCTGTATTCTGTAAGTGATG 57.278 34.615 0.00 0.00 33.76 3.07
1769 1939 7.798596 AGCATTTCATCCTGTATTCTGTAAG 57.201 36.000 0.00 0.00 0.00 2.34
1774 1944 9.717942 GTATAGAAGCATTTCATCCTGTATTCT 57.282 33.333 0.00 0.00 35.70 2.40
1775 1945 8.651588 CGTATAGAAGCATTTCATCCTGTATTC 58.348 37.037 0.00 0.00 35.70 1.75
1776 1946 8.367911 TCGTATAGAAGCATTTCATCCTGTATT 58.632 33.333 0.00 0.00 35.70 1.89
1777 1947 7.896811 TCGTATAGAAGCATTTCATCCTGTAT 58.103 34.615 0.00 0.00 35.70 2.29
1778 1948 7.284919 TCGTATAGAAGCATTTCATCCTGTA 57.715 36.000 0.00 0.00 35.70 2.74
1779 1949 6.161855 TCGTATAGAAGCATTTCATCCTGT 57.838 37.500 0.00 0.00 35.70 4.00
1780 1950 6.648310 ACATCGTATAGAAGCATTTCATCCTG 59.352 38.462 0.00 0.00 35.70 3.86
1838 2008 2.666508 GCTAGCGTCTTCAAATCGTTGA 59.333 45.455 0.00 0.00 42.12 3.18
1842 2012 1.324736 GTGGCTAGCGTCTTCAAATCG 59.675 52.381 9.00 0.00 0.00 3.34
1885 2055 3.481453 TCATCATGACAAACGAAACCCA 58.519 40.909 0.00 0.00 0.00 4.51
1930 2100 9.981114 ACTTACACTCATTCCCAAAATTTTAAG 57.019 29.630 2.44 1.92 0.00 1.85
1936 2106 6.705825 GCAAAACTTACACTCATTCCCAAAAT 59.294 34.615 0.00 0.00 0.00 1.82
1942 2112 6.012658 TGATGCAAAACTTACACTCATTCC 57.987 37.500 0.00 0.00 0.00 3.01
2038 2212 9.025041 GCCTATACTAATATTTTGGGCAAATCT 57.975 33.333 0.00 0.00 36.43 2.40
2039 2213 8.802267 TGCCTATACTAATATTTTGGGCAAATC 58.198 33.333 12.07 0.00 43.07 2.17
2040 2214 8.719645 TGCCTATACTAATATTTTGGGCAAAT 57.280 30.769 12.07 0.00 43.07 2.32
2041 2215 7.232534 CCTGCCTATACTAATATTTTGGGCAAA 59.767 37.037 14.09 0.00 44.87 3.68
2042 2216 6.719370 CCTGCCTATACTAATATTTTGGGCAA 59.281 38.462 14.09 0.00 44.87 4.52
2043 2217 6.044989 TCCTGCCTATACTAATATTTTGGGCA 59.955 38.462 13.13 13.13 43.67 5.36
2044 2218 6.481643 TCCTGCCTATACTAATATTTTGGGC 58.518 40.000 0.00 1.02 37.77 5.36
2045 2219 6.599638 GCTCCTGCCTATACTAATATTTTGGG 59.400 42.308 0.00 0.00 0.00 4.12
2046 2220 7.617041 GCTCCTGCCTATACTAATATTTTGG 57.383 40.000 0.00 0.00 0.00 3.28
2072 2246 3.964875 CAATATGGTGCCGCCCGC 61.965 66.667 0.00 0.00 36.04 6.13
2073 2247 0.321210 TATCAATATGGTGCCGCCCG 60.321 55.000 0.00 0.00 36.04 6.13
2074 2248 1.165270 GTATCAATATGGTGCCGCCC 58.835 55.000 0.00 0.00 36.04 6.13
2075 2249 0.796312 CGTATCAATATGGTGCCGCC 59.204 55.000 0.00 0.00 37.90 6.13
2076 2250 1.790755 TCGTATCAATATGGTGCCGC 58.209 50.000 0.00 0.00 0.00 6.53
2077 2251 5.356882 AAATTCGTATCAATATGGTGCCG 57.643 39.130 0.00 0.00 0.00 5.69
2111 2285 9.632807 GCTACAAGTATTTCCATACAGAGATAG 57.367 37.037 0.00 0.00 38.24 2.08
2112 2286 9.368416 AGCTACAAGTATTTCCATACAGAGATA 57.632 33.333 0.00 0.00 38.24 1.98
2113 2287 8.147058 CAGCTACAAGTATTTCCATACAGAGAT 58.853 37.037 0.00 0.00 38.24 2.75
2114 2288 7.417911 CCAGCTACAAGTATTTCCATACAGAGA 60.418 40.741 0.00 0.00 38.24 3.10
2115 2289 6.703607 CCAGCTACAAGTATTTCCATACAGAG 59.296 42.308 0.00 0.00 38.24 3.35
2116 2290 6.408092 CCCAGCTACAAGTATTTCCATACAGA 60.408 42.308 0.00 0.00 38.24 3.41
2117 2291 5.760253 CCCAGCTACAAGTATTTCCATACAG 59.240 44.000 0.00 0.00 38.24 2.74
2118 2292 5.397447 CCCCAGCTACAAGTATTTCCATACA 60.397 44.000 0.00 0.00 38.24 2.29
2119 2293 5.063880 CCCCAGCTACAAGTATTTCCATAC 58.936 45.833 0.00 0.00 36.25 2.39
2120 2294 4.104102 CCCCCAGCTACAAGTATTTCCATA 59.896 45.833 0.00 0.00 0.00 2.74
2121 2295 3.117512 CCCCCAGCTACAAGTATTTCCAT 60.118 47.826 0.00 0.00 0.00 3.41
2122 2296 2.241176 CCCCCAGCTACAAGTATTTCCA 59.759 50.000 0.00 0.00 0.00 3.53
2123 2297 2.508300 TCCCCCAGCTACAAGTATTTCC 59.492 50.000 0.00 0.00 0.00 3.13
2124 2298 3.926058 TCCCCCAGCTACAAGTATTTC 57.074 47.619 0.00 0.00 0.00 2.17
2125 2299 4.044191 AGTTTCCCCCAGCTACAAGTATTT 59.956 41.667 0.00 0.00 0.00 1.40
2126 2300 3.591977 AGTTTCCCCCAGCTACAAGTATT 59.408 43.478 0.00 0.00 0.00 1.89
2127 2301 3.190439 AGTTTCCCCCAGCTACAAGTAT 58.810 45.455 0.00 0.00 0.00 2.12
2128 2302 2.627933 AGTTTCCCCCAGCTACAAGTA 58.372 47.619 0.00 0.00 0.00 2.24
2129 2303 1.446016 AGTTTCCCCCAGCTACAAGT 58.554 50.000 0.00 0.00 0.00 3.16
2130 2304 2.572104 ACTAGTTTCCCCCAGCTACAAG 59.428 50.000 0.00 0.00 0.00 3.16
2131 2305 2.627933 ACTAGTTTCCCCCAGCTACAA 58.372 47.619 0.00 0.00 0.00 2.41
2132 2306 2.337359 ACTAGTTTCCCCCAGCTACA 57.663 50.000 0.00 0.00 0.00 2.74
2133 2307 3.102204 TGTACTAGTTTCCCCCAGCTAC 58.898 50.000 0.00 0.00 0.00 3.58
2134 2308 3.478175 TGTACTAGTTTCCCCCAGCTA 57.522 47.619 0.00 0.00 0.00 3.32
2135 2309 2.337359 TGTACTAGTTTCCCCCAGCT 57.663 50.000 0.00 0.00 0.00 4.24
2136 2310 2.305052 ACTTGTACTAGTTTCCCCCAGC 59.695 50.000 0.00 0.00 0.00 4.85
2137 2311 4.565028 GGAACTTGTACTAGTTTCCCCCAG 60.565 50.000 21.05 0.00 38.43 4.45
2138 2312 3.328637 GGAACTTGTACTAGTTTCCCCCA 59.671 47.826 21.05 0.00 38.43 4.96
2139 2313 3.307975 GGGAACTTGTACTAGTTTCCCCC 60.308 52.174 27.93 24.42 44.78 5.40
2140 2314 3.947868 GGGAACTTGTACTAGTTTCCCC 58.052 50.000 27.93 24.96 44.78 4.81
2143 2317 8.667076 TTTAGTTGGGAACTTGTACTAGTTTC 57.333 34.615 21.05 19.16 42.81 2.78
2144 2318 9.465199 TTTTTAGTTGGGAACTTGTACTAGTTT 57.535 29.630 21.05 9.00 42.81 2.66
2145 2319 9.636789 ATTTTTAGTTGGGAACTTGTACTAGTT 57.363 29.630 20.40 20.40 42.81 2.24
2152 2326 8.852135 TCGAAATATTTTTAGTTGGGAACTTGT 58.148 29.630 1.43 0.00 42.81 3.16
2153 2327 9.855021 ATCGAAATATTTTTAGTTGGGAACTTG 57.145 29.630 1.43 0.00 42.81 3.16
2160 2334 9.755064 CGGCTATATCGAAATATTTTTAGTTGG 57.245 33.333 1.43 0.00 30.59 3.77
2163 2337 9.701098 TCACGGCTATATCGAAATATTTTTAGT 57.299 29.630 1.43 0.00 30.59 2.24
2164 2338 9.953825 GTCACGGCTATATCGAAATATTTTTAG 57.046 33.333 1.43 0.00 30.59 1.85
2165 2339 8.641155 CGTCACGGCTATATCGAAATATTTTTA 58.359 33.333 1.43 0.00 30.59 1.52
2166 2340 7.170320 ACGTCACGGCTATATCGAAATATTTTT 59.830 33.333 0.35 0.00 30.59 1.94
2167 2341 6.643770 ACGTCACGGCTATATCGAAATATTTT 59.356 34.615 0.35 0.00 30.59 1.82
2168 2342 6.154445 ACGTCACGGCTATATCGAAATATTT 58.846 36.000 0.35 0.00 30.59 1.40
2169 2343 5.706916 ACGTCACGGCTATATCGAAATATT 58.293 37.500 0.35 0.00 30.59 1.28
2170 2344 5.106436 TGACGTCACGGCTATATCGAAATAT 60.106 40.000 15.76 0.00 35.04 1.28
2171 2345 4.213906 TGACGTCACGGCTATATCGAAATA 59.786 41.667 15.76 0.00 35.04 1.40
2172 2346 3.004002 TGACGTCACGGCTATATCGAAAT 59.996 43.478 15.76 0.00 35.04 2.17
2173 2347 2.355444 TGACGTCACGGCTATATCGAAA 59.645 45.455 15.76 0.00 35.04 3.46
2174 2348 1.941975 TGACGTCACGGCTATATCGAA 59.058 47.619 15.76 0.00 35.04 3.71
2175 2349 1.529865 CTGACGTCACGGCTATATCGA 59.470 52.381 15.76 0.00 35.04 3.59
2176 2350 1.529865 TCTGACGTCACGGCTATATCG 59.470 52.381 15.76 0.55 35.04 2.92
2177 2351 3.725305 CGATCTGACGTCACGGCTATATC 60.725 52.174 15.76 3.62 35.04 1.63
2178 2352 2.159824 CGATCTGACGTCACGGCTATAT 59.840 50.000 15.76 0.00 35.04 0.86
2179 2353 1.529865 CGATCTGACGTCACGGCTATA 59.470 52.381 15.76 0.00 35.04 1.31
2180 2354 0.308068 CGATCTGACGTCACGGCTAT 59.692 55.000 15.76 0.00 35.04 2.97
2181 2355 1.022982 ACGATCTGACGTCACGGCTA 61.023 55.000 24.87 7.03 43.02 3.93
2182 2356 1.863662 AACGATCTGACGTCACGGCT 61.864 55.000 24.87 12.83 45.83 5.52
2183 2357 1.007336 AAACGATCTGACGTCACGGC 61.007 55.000 24.87 0.00 45.83 5.68
2184 2358 1.385743 GAAAACGATCTGACGTCACGG 59.614 52.381 24.87 13.82 45.83 4.94
2185 2359 2.316792 AGAAAACGATCTGACGTCACG 58.683 47.619 21.19 21.19 45.83 4.35
2186 2360 3.566523 AGAGAAAACGATCTGACGTCAC 58.433 45.455 15.76 4.17 45.83 3.67
2187 2361 3.502595 AGAGAGAAAACGATCTGACGTCA 59.497 43.478 18.88 18.88 45.83 4.35
2188 2362 4.086199 AGAGAGAAAACGATCTGACGTC 57.914 45.455 9.11 9.11 45.83 4.34
2190 2364 4.349663 AGAGAGAGAAAACGATCTGACG 57.650 45.455 0.00 0.00 39.31 4.35
2191 2365 5.099575 GGAAGAGAGAGAAAACGATCTGAC 58.900 45.833 0.00 0.00 0.00 3.51
2192 2366 5.013547 AGGAAGAGAGAGAAAACGATCTGA 58.986 41.667 0.00 0.00 0.00 3.27
2193 2367 5.101628 CAGGAAGAGAGAGAAAACGATCTG 58.898 45.833 0.00 0.00 0.00 2.90
2194 2368 4.159506 CCAGGAAGAGAGAGAAAACGATCT 59.840 45.833 0.00 0.00 0.00 2.75
2195 2369 4.429108 CCAGGAAGAGAGAGAAAACGATC 58.571 47.826 0.00 0.00 0.00 3.69
2196 2370 3.368948 GCCAGGAAGAGAGAGAAAACGAT 60.369 47.826 0.00 0.00 0.00 3.73
2197 2371 2.028930 GCCAGGAAGAGAGAGAAAACGA 60.029 50.000 0.00 0.00 0.00 3.85
2198 2372 2.342179 GCCAGGAAGAGAGAGAAAACG 58.658 52.381 0.00 0.00 0.00 3.60
2199 2373 2.342179 CGCCAGGAAGAGAGAGAAAAC 58.658 52.381 0.00 0.00 0.00 2.43
2200 2374 1.276421 CCGCCAGGAAGAGAGAGAAAA 59.724 52.381 0.00 0.00 41.02 2.29
2201 2375 0.898320 CCGCCAGGAAGAGAGAGAAA 59.102 55.000 0.00 0.00 41.02 2.52
2202 2376 1.608717 GCCGCCAGGAAGAGAGAGAA 61.609 60.000 0.00 0.00 41.02 2.87
2203 2377 2.055042 GCCGCCAGGAAGAGAGAGA 61.055 63.158 0.00 0.00 41.02 3.10
2204 2378 2.057408 AGCCGCCAGGAAGAGAGAG 61.057 63.158 0.00 0.00 41.02 3.20
2205 2379 2.038007 AGCCGCCAGGAAGAGAGA 59.962 61.111 0.00 0.00 41.02 3.10
2206 2380 2.186384 CAGCCGCCAGGAAGAGAG 59.814 66.667 0.00 0.00 41.02 3.20
2207 2381 3.393970 CCAGCCGCCAGGAAGAGA 61.394 66.667 0.00 0.00 41.02 3.10
2208 2382 2.959484 TTCCAGCCGCCAGGAAGAG 61.959 63.158 10.10 0.00 38.91 2.85
2209 2383 2.927856 TTCCAGCCGCCAGGAAGA 60.928 61.111 10.10 0.00 38.91 2.87
2210 2384 2.747855 GTTCCAGCCGCCAGGAAG 60.748 66.667 13.62 0.00 44.08 3.46
2211 2385 4.344865 GGTTCCAGCCGCCAGGAA 62.345 66.667 10.10 10.10 41.41 3.36
2244 2418 0.103208 CGACGCTAGAAGATTGGCCT 59.897 55.000 3.32 0.00 0.00 5.19
2249 2423 1.677052 GGAGGACGACGCTAGAAGATT 59.323 52.381 0.00 0.00 0.00 2.40
2286 2474 1.990060 CGACCCCCTCACCACTGAT 60.990 63.158 0.00 0.00 0.00 2.90
2289 2477 4.640690 AGCGACCCCCTCACCACT 62.641 66.667 0.00 0.00 0.00 4.00
2302 2490 2.809174 CGTGCGTGAATCCAGCGA 60.809 61.111 0.00 0.00 0.00 4.93
2303 2491 3.112075 ACGTGCGTGAATCCAGCG 61.112 61.111 0.00 0.00 0.00 5.18
2337 2526 6.797454 ACAGCCTAAAAATCTAGACTACGAG 58.203 40.000 0.00 0.00 0.00 4.18
2338 2527 6.770746 ACAGCCTAAAAATCTAGACTACGA 57.229 37.500 0.00 0.00 0.00 3.43
2349 2538 5.925969 CCAAAACGATGAACAGCCTAAAAAT 59.074 36.000 0.00 0.00 0.00 1.82
2358 2547 2.574322 CGAAGCCAAAACGATGAACAG 58.426 47.619 0.00 0.00 0.00 3.16
2392 2581 7.474398 TCTGAAGAATCTTTATTCAGCGATG 57.526 36.000 16.05 0.00 46.11 3.84
2393 2582 7.387397 GGATCTGAAGAATCTTTATTCAGCGAT 59.613 37.037 16.05 8.58 46.11 4.58
2394 2583 6.703607 GGATCTGAAGAATCTTTATTCAGCGA 59.296 38.462 16.05 4.97 46.11 4.93
2406 2595 4.702831 GTCAGGGAAGGATCTGAAGAATC 58.297 47.826 0.00 0.00 41.07 2.52
2414 2603 1.045911 GCCTCGTCAGGGAAGGATCT 61.046 60.000 0.00 0.00 40.75 2.75
2422 2611 4.227134 CCGATGGCCTCGTCAGGG 62.227 72.222 18.94 4.17 46.18 4.45
2440 2629 4.961730 CCAAATTCATCCCCAACCATAAGA 59.038 41.667 0.00 0.00 0.00 2.10
2442 2631 4.952845 TCCAAATTCATCCCCAACCATAA 58.047 39.130 0.00 0.00 0.00 1.90
2457 2646 5.930837 TTGAACAGTCTGGTTTCCAAATT 57.069 34.783 4.53 0.00 30.80 1.82
2460 2649 6.040391 CCTTATTTGAACAGTCTGGTTTCCAA 59.960 38.462 4.53 0.00 30.80 3.53
2467 2656 4.096984 GCCATCCTTATTTGAACAGTCTGG 59.903 45.833 4.53 0.00 0.00 3.86
2471 2660 3.440173 CACGCCATCCTTATTTGAACAGT 59.560 43.478 0.00 0.00 0.00 3.55
2475 2664 2.752354 CACCACGCCATCCTTATTTGAA 59.248 45.455 0.00 0.00 0.00 2.69
2476 2665 2.364632 CACCACGCCATCCTTATTTGA 58.635 47.619 0.00 0.00 0.00 2.69
2478 2667 1.762708 CCACCACGCCATCCTTATTT 58.237 50.000 0.00 0.00 0.00 1.40
2479 2668 0.751643 GCCACCACGCCATCCTTATT 60.752 55.000 0.00 0.00 0.00 1.40
2480 2669 1.152963 GCCACCACGCCATCCTTAT 60.153 57.895 0.00 0.00 0.00 1.73
2514 2703 3.123620 CTCCCAAGCTCTGCGCAC 61.124 66.667 5.66 0.00 42.61 5.34
2516 2705 2.914777 CTACCTCCCAAGCTCTGCGC 62.915 65.000 0.00 0.00 39.57 6.09
2518 2707 0.176910 GACTACCTCCCAAGCTCTGC 59.823 60.000 0.00 0.00 0.00 4.26
2519 2708 0.827368 GGACTACCTCCCAAGCTCTG 59.173 60.000 0.00 0.00 31.83 3.35
2520 2709 0.413832 TGGACTACCTCCCAAGCTCT 59.586 55.000 0.00 0.00 38.49 4.09
2610 2808 3.788142 AGGAAACCATACCTGTCATCCAT 59.212 43.478 0.00 0.00 34.99 3.41
2617 2815 2.236395 CGAAGGAGGAAACCATACCTGT 59.764 50.000 0.00 0.00 36.57 4.00
2652 2850 1.746615 CAAGATCTGGCACCCCACG 60.747 63.158 0.00 0.00 35.79 4.94
2669 2867 0.107643 TGGACACGCCATCAAACTCA 59.892 50.000 0.00 0.00 43.33 3.41
2714 2912 0.109723 AAGTGAAGCCCTTGCCGTTA 59.890 50.000 0.00 0.00 38.69 3.18
2719 2917 3.593834 CCAAAAGTGAAGCCCTTGC 57.406 52.632 0.00 0.00 37.95 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.