>input_sequence_70205
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------------------------CTATATAATAGCTGGCCAAGCA----ATCTTGA--AACATCAAAGCTTAT------
-----------TTCTTAGCTCTTCAGCCATGACGTCCAAGGCCTGCATCTTCGTCCTGCTCTTCGCTGCAGCTCTTCTCC
ATACAGGTACGCAAGGACAATACAGTATA---------------------------------------------------
----------------------ATACT---TCGCCGTCGCAGTTTAGTCACATCGATCGATCCTTGGATCTTACGTAGTA
CCGTTGACGTGTCCGCAGGGCATGCCGGTGGGGACCCCGGGCCGTGCGAGCTGGAGGACATCCGCGTGTCGTCGGTGCTG
ACGGGGCGGCGGGTCCTGAACGTGCCGCAGCACGAGGTGACGGTGGAGAACCTGTGCTCGTGCCCGCAGAGCGGCGTGGT
GATGTCGTGCAACCTCGGCGAGGTGAAGGCGGTGATCCTGGACACGACCAAGATCCGGCTGCTGAACCGGGAGGAAGGGC
TGTGCCTCATCAACAGCGGCTGGCCCATCTTCAACGGCAAGCCCATCACCTTCACCTACGCCGCCAAGACGCCGCTCGAC
TTCACCCTCTACAACGCCTCGCCGGAATGCCGGGCGTGAGACACGGTCCAGGCCAGTATTTTGG-----TTTTTGCGTTG
GAGTGCC-TTCTTTTATCGAATGCCCGCAGTTGGAATGGCAACACCAAAATGCGTCTGTTCCTTTCTGTGTATCATGTCT
CATTGCCTCCATTCTTCATGTCCTTCCTACGCACCCAAGCAATTATTCTGTAGTCCTATCCATCCCA-------------
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>chr4D_1_TraesCS4D01G090100
TTTGGGAGAAGGCTAAGCCAACTGAAACTTGCGTTTTATTTTAACTTTTTAAACCGAACAATGCTCTTTATTTACCAGAA
TCAGTTGAAAATCTAATGTCCGATTTTAGGCCAACTCCAACGCACG----------------------------------
--------CAAATTGCGGCCCAACATGTGAGAGCAAACGGACAAACATCTGTTTTTCGTCCGCCTTCGACCCATTCACGA
CCCAAATTTAGGCCGCCGCCACACCATTGCTCGATTTGGAGAATCTTTATTCCCGCTGCCACGCTGCACAGCTTCCGTGA
CTCCGCCGATCGTCTCCCCGCGACTCTAACGCCCGATTCCAAGCCACACCCCCGCCACCGCCGAAGGTCTCGAAGAGCAA
GACCGGCTTCTTCACGGTGCAGGAGAAGCCGTTCCGGAACTTCGGTCTCGAGTTTCAGTGCGACGGCTATGACTACTGCT
TGACACCTTCAAGTAACCAGAGGTGTCCGTGCGTGCGTACGACGTTGCCGCTTGGTGTTTCGGCTTTCGGCCGATCGAGG
CACGAGTCCCGATAGGTAGTGGCAGAGATTTGATGGGACCAAGATGGGCGAGCGGATCGACACCAGCCTAAGTTCAGTAC
AAAGAGGGTTTTCCTCCGATTTTCATTAGAGAAACCAGCATGAGTTCAGTACAAGAGGCACCGGGCATATATTTGTGACT
CCAAATCGTATTTCTGTCGTCGGTATGCACGGAGAATGATTTCATTCCAAACTTTGTGTCCCTACTCTCCTGAAGATAGA
AGGAAATTAGTGCAAGGATTCCGTCGGAGATGATTAGTTGATTGCTTACCGAATAATCTCACGGCCTTAATTAATTTCGT
TGAGATAAAAAATAGTACGGAGTACTTGGTAAGAAACC----ACAAATCATCACGGAATTTTGGCACGAGAGAGAGCATT
--C---ATGGAAGGAGATTATATAAACGGAAGCACCAAACTCATGATGGACGTACATCCGATGGGTAG------------
-TCCGTATGCATGAGCCAGCAGGCCTATATAATAGCTGGCCAAGCA----ATCTTGA--AACATCAAAGCTTAT------
-----------TTCTTAGCTCTTCAGCCATGACGTCCAAGGCCTGCATCTTCGTCCTGCTCTTCGCTGCAGCTCTTCTCC
ATACAGGTACGCAAGGACAATACAGTATA---------------------------------------------------
----------------------ATACT---TCGCCGTCGCAGTTTAGTCACATCGATCGATCCTTGGATCTTACGTAGTA
CCGTTGACGTGTCCGCAGGGCATGCCGGTGGGGACCCCGGGCCGTGCGAGCTGGAGGACATCCGCGTGTCGTCGGTGCTG
ACGGGGCGGCGGGTCCTGAACGTGCCGCAGCACGAGGTGACGGTGGAGAACCTGTGCTCGTGCCCGCAGAGCGGCGTGGT
GATGTCGTGCAACCTCGGCGAGGTGAAGGCGGTGATCCTGGACACGACCAAGATCCGGCTGCTGAACCGGGAGGAAGGGC
TGTGCCTCATCAACAGCGGCTGGCCCATCTTCAACGGCAAGCCCATCACCTTCACCTACGCCGCCAAGACGCCGCTCGAC
TTCACCCTCTACAACGCCTCGCCGGAATGCCGGGCGTGAGACACGGTCCAGGCCAGTATTTTGG-----TTTTTGCGTTG
GAGTGCC-TTCTTTTATCGAATGCCCGCAGTTGGAATGGCAACACCAAAATGCGTCTGTTCCTTTCTGTGTATCATGTCT
CATTGCCTCCATTCTTCATGTCCTTCCTACGCACCCAAGCAATTATTCTGTAGTCCTATCCATCCCAATAAACTGGTATT
GTGGTCGCCATGACATCACTTACAGAATACAGGATGAAATGCTTCTATACGATGTTTTTTATGCACGCAAAAGCGTACCT
TTTTTTTTCAACGATTTGAAGACGCTAGCCACATTTGCCATGTCTTGTTTTTTTTGGGTTTCGTTTGTCATGATGATGAT
CGGATGGTATTAATGCGTTCTTAAAATTTTGGGAA-TGAGTGTAAGTTTTGCATCAGTGAAACTGTGAAAGTAGACGAGA
ATATATCAAAAATAC---CACAGATGTGAAATTTTACAAAAAATAATATAAAGATTTGCCCAAAATATTAGTATAGGCAG
GAGCCGCGGGCGGCACCATATTGATACGAATTTTTTTCTTTATACTATCTCTGTATGGAAATACTTGTAGCTGGGGGAAA
CTAGTACAAGTTCCCAACTAAAAATATTTCGATATAGCCGTGACGTCAGATCGTTTTCTCTCTCTTCCTGGCGGCTGGAA
CCCTAGCCGCCGCCAGGAGGCCAATCTTCTAGCGTCGTCCTCCGGCGGCTCCC--------------TCGGTCATCAGTG
GTGAGGGGGTCGCT-GGATTCACGCACGTGGATCGTTTTTACTCTCTCGTAGTCTAGATTTTTAGGCTGTTCATCGTTTT
GGCTTCGGCAGCGACGATGACATCGCTGAATAAAGATTCTTCAGATCCTTCCCTGACGAGGCCATCGGTCTTATGGTTGG
GGATGAATTTGGAAACCAGACTGTTCAAATAAGGATGGCGTGGTGGCGGCCGCATCCTCGGGGTGCGCA---------GA
GCTTGGGAGGTAGTCCAGGAGCGGATGCAGATTGTGGTCTGCATCGACGACATCTGGAAGACGGAACGTGTGCTGGGTTC
GTGGTTCATGGATGACAGGTATGGTTTCCTCCTTCGGCGTCTTAGTCGTCGTGGGGTGCCAGATCTTGAGTTTGATGGCG
TGTCCAGGGTGTTGCCCCGGTCTGATTCGTTTAACGGCAAGGGCTTCACTTTTGG
>chr4A_6
-----GAGAAGGCTAAGCCAAATGAAACTTGCGTTTTATTTTAACTTTTTTAGCCGAACAACGCTTTTTATTTACCGGAA
TCAATTAAAAATCTAACGTCAGATTT--GGTCAACTCCAACACACGACTCCAAATGGTCCGGCTGTGTCCATTTGGAAGT
AGAGGATACAAATTGCGGACCAACACACGGG-GCAAACGGACAAATGTTTGTTTTTCGTCCGCTTCCGACCCATTCACTG
CC-------AGGCCGCGGCCGCACCGTCACTCGATTTGGAGAATCTTCATTGTCGCCGCCACGTTGCACAGCTTCCATGA
CTCCA---------------CGACTCTAACACCCGATTCCAAGCCGCACCCCCGCTA---CCGAAGGTCTTGAAGTGCAA
GACCGGCTTCTTCGGGGTATGGGAGAAGCCGTTCGGGAACTTGGGTCTCGAGTTCCAGTGCGACGGCTATGACTACTGCT
TGACACCTTCAAGTAACCAGAGGTGTTCGTGCGTGCGTACGACGTTGTCGCTTGGTGTTTCGGC----------------
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>chr4A_668
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---------------------------------------------------------------------TATTTGTGACT
CCAAATCGTATTTCTGTCGTCGGTATGCACGGAGGATGATTTCATTCCAGACTT-GTGCGCGTACTCTCCTGAAGGTAGA
AGGAAATTAATCCACGGATTCGGTAGGAAATG-------------------------------------ATTACTTTCGT
TGAGATCAAAATA---------TACTTGGTAAGAAACT----GCATATCATTACGGAATTTTAGCACGAGAGAGGGCACA
TGC---ATGGAAGGAGATTATA--AACGGAAGCAGCAAACTCGGGATCGATGTATATTCGATCGATAC------------
-GCAGTATGTACGAGCCA-CAGGCCTATATAATAGCTGGGCTGGCCAAGCAATCTTCATAACATCAAAGCTTCTCCTGAA
CTATACCTTTGTTCTTAGCTCCTCAGCCATGGTGTCCAAGACCTGCATCCTCGTCCTGCTCTTCGTTGCAGCTCTTCTCC
ATACTGGTACGCAAGGATAATGTAATAGA---------------------------------------------------
----------------------GTAGT---TCGCCGTCACAGTTTAATCACATCGATCGATCCTTGGATCTTACGTAGTA
CCGTGGACGTGTCCGCAGGGCATGCTGGTGGCGACCCCGGGCCGTGCGAGCTGGAGGACATCCGCGTGTCGTCGGTGCTG
ACGGGGCGGCGGGTCCTGAACGTGCCGCAGCACGAGGTGACGGTGGAGAACCTGTGCTCGTGCCCGCAGAGCGGCGTGGT
GATGTCGTGCAACCTCGGCGAGGTGAAGGCGGTGATCCTAGACACAACCAAGATCCAGCTGCTCAACCGGGAGGACGGGC
TGTGCCTCATCAACAGCGGCTGGCCCATCTTCAACGGCAAGCCCATCACCTTCACCTACGCCGCCAAGACGCCGCTTGAC
TTCACCCTCTATAACGCCTCGCCGGAATGCCGGGCGTGAGACACGGTCCAGGCCAATATTTGTTGTTTTTTTTTGCGTCG
GAGTACTTTTCTTTTATCGAATGCCCGCAGTTGGCATGGCAACACCAAAGTGCGCATGTTCCTTTCTGTGTATCATTTCT
CATTGCCTCCATTCTTCATGTCCCTCTTACCA----AAGCAATTAAGTC---------TCCATCCCAATAAACTGGTATT
GTGGTTGCCT-GATATCATTTAC-------AGGATGAAAATGC-----------TTTTTTATGCACGCGAAAGAGTACCA
TTTTTTT--AATGATTTGAAGACGCTAACCACATTTGCCACGTCTTGTTTTTTTAGGGTTTCGTTTGTCATGATGATGAT
CGGATGGTATTAATGCGTAGTTAAATTTTTGTGAATA-AGTGTAAATTTTGCAT-AGTGAAACAGTAAAAGTAGACGAGA
ATATATTAAAAAATACTACAGAGATGTGAAAATTTACAA-----------------------------------------
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>chr4B_668
TATTTTA-------------------------------------------------------------------------
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-----------------------------------------------------------------------------ACT
CCAAATCGTATTTCAGTCGTCGGTATGCACGGAGAATGATTTCATTCCGAACTT-GTGTCCGTACTCTCCTAAAGACAGA
AGGTTGTTGAGATCAAAAGTACTTGGT------------------------AAGAAACTCCCGGCC----TTAATTTTGT
TGAGATCAAAA----------GTACTTGGTAAGAAACTCCCTGCAAATCATTACGGAATTTTAGCACGAGAGAGAGCATG
CATGGAATGGAAGGAGATTATA--AACGGAAGCACCAAACTCGTGATCGACGTATATCCGATGGCCATATCCGATCGGTG
CTCCGTATGTATGAGCCGGCAGGCCTATATAATAGCTGGCCAAGCA----AATCTTCATCACATCAAAGCTTCGCCTGAA
CCACC---TTGTTCTTAGCTCTTCAGCCATGGCGTCCAAGACCTGCATCCTCGTCCTGCTCTTCGTTGCAGCTCT---CC
ATACCGGTAGGCAAGAACAATACACTCTCTGTCCCGAATTACTTGTCCTGAACTATCTAAACAAATCAAGACAAGTAATT
TGAGATGGAGGTAATATAATATACACT---TGAGCGTCGCAGTTTAATCTCCGTT-----------GATCTTAC---GTA
CCGTTGACGTGTCGGCAGGGCATGCTGGTGGCAACCCCGGGCCGTGCCAGCCGGAGGACATCCGCGTCTCGTCGGTGCTG
ACGGGGCGGCGGGTCCTGAACGTGCCGCAGCACGAGGTGACGGTGGAGAACCTGTGCTCATGCCCGCAGAGCGGCGTGGT
GATGTCGTGCAACCTCGGCGAGGTGAAGGCGGTGATCCTGGACACGACCAAGATCCGGCTGCTGAACCGGGAGGATGGGC
TGTGCCTCATCAACAGCGGCTGGCCCATCTTCAACGGCAAGCCCATCACCTTCACCTACGCTGCCAAGACGCCGCTCGAC
TTCACCCTCTATAACGCCTCGCCGGAATGCCGGGCGTGAGACACGGTCCAGGCCAATATTTT-G-----TTTTTGCGTCG
GAGTACT-TTCTTTCATCGAATGCCCCCATTTGGCATGGCAACACCAAAATGCGCCTGTTCCTTTGTGTGTATCATTTCT
CATTGCCTACATTCTTCATGTCCCTCCTACGCACCCAAGCAATTATTCTGTAGTCCTATCCATCCCAATAAACTGGTATT
GTGGTTGCCTTGATATCATTTAC-------AGGATGAACTGCTTCTATACGATGTTTTTTATGCACGCAACAGAGTACCT
TGTTTTT-CAATGATTTGAAGACGCTAACCACATTTGCCACGTCTCG-TTTTTTAGGGTTTCGTTTGTCATGATGATGAT
CGGATGGTATTAATGCGTAGTTAAATTTTTGTGAATTGAGTGTAATTTTTGCATCAGTGAAACTGTGAAAGTAGACGAGA
ATATGTT-AAAAATACTACAGAGATGTGAAAAATTACAAAA---------------------------------------
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>chr5A_1045
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-----------TTCTTAG--CTTCAGCCATGGCGTCCAAGGCCTGCATCCTGATCCTGCTCCTCGTTGCAGCTCTTCTCC
ATACAGGTACGCAAGAACAAG-----ATA---------------------------------------------------
----------------------ATACTTGGTCGTCGTCGCAGTTTAATCTCACT----GATCCTTGGATCTTAT---GTG
CCGTTGATGTGTCCATAGGTCATGCTAGTGGCGACGCCGGGCCGTGCCAACTGGAGGACATCCGCGTCTCGTCGGTGTTG
ACGGGGCGGCGGGTCCTGAATGTGCCGGAGTACAGCGTGACGGTGGAGAACACGTGCTCGTGCGCGCAGGCGGGCGTGGT
GATGTACTGCAACCTCGGCGAGGTGAAAGCGGTGATCTCGGACACGACCAAGCTCCGCCTGCTGAGCCGGAAGCAAGGGC
ACTGCCTCATCAACAGCGGCTGGCCGATCTTCAACGGCAAGCCCATAATGTTCACCTACGCCGCCAAGACGCAGCTCGAC
TTCACCCTCGATAACGCCTCGCCGGAGTGCCTGGTGTGA-----------------------------------------
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>chr2B_2200
GTTTTCCTCTCGTA------------------------------------------------------------------
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------------------------------------------------------------------CCTGGCGGCTGCAA
CCCTAGCTGCCGCCAGG-GGCCGATCTTCCAACGACGTTCTCCGGCGGCTCCCCTCCGCCGGTGACTTCGGTCGTCGGTG
GTGAGGGGGGTCGCCGGATCCACGCGTGTGGATCGTTTTTACTCTTCCGTAGTCTAGGTTTTTAGGTTGTTCATCGTCTT
TGCTTCGGCGGCGACGATGATGACGCTGAATAAATATTCTTCGGATCCTTTCCTGACGAGGCCATCGGACCTATGGTTGG
GGATGGATCTGGAAATCAGTCTGGACCTGTGTCCTCGGGCTCCATCGTTGTGATAACGTTTGCTCCAGCGTCGGCGTGGA
GCTTGGGAGGTAGTCCAGGAGCGGATGCAGATTGTGGTCTGCATCGACGACATCTGGAAGACGGAACGTGTGCTGGGTTC
GTGGTTCGTGGATGGCAGGTATGGTTTCCTCCTTCGGCGTCTTAGTCGTGGTGGGGTGCCAGATCTGGAGTTCGATGGCG
TGTCCGGGGTGTTGCCCCGGTCTGATTCGTTCAACGACAATGGCTTCACTTTTGG
>SNPs
---SS----------------S----------------------------S-S--------S---S----------S---
---S--S---------S---S-----SS--S----------S--------------------------------------
------------------S------SSS-S-S-------------SS-S--------------S-S------------SS
--SSSSSSS-------S---S----S-SS------------------S---SS---S------S------------S---
----SSSSSSSSSSSSSSSS----------S--------------S---------S-SSS----------S----S----
-------------SS---SSS-------------S-------S-----------S-------------------------
--------------------------S--------------------S----------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
------------------------------------------------------S------S------------------
---------S-S------------S---S---SSSSSSSSSSSSSSSSSSS--S--S---S-----SSS-----------
------S----SSSSSSSSSS----------------S----S--------S----------S----------------S
----------------------SS------------------S----S------S---------S--S------------
---------S-----------------------------------------SSS-SS---------------S-------
-------------------------------S-----------------S---------------S--------------
------------------------S-------------------------------------------------------
----------------------------------------------S---------------------------------
-------------------------S-----S------------------------------------------------
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-----------S-------------------------------------------S------S---------------S-
----S-S---------------------------S-------------------S---------------------S---
-----------------------S--------------------------------------------------------
-----S---S---S----S----SSSSSSS-------------------------------------------S------
-------S---S---------------S------------S-------------S-------------------------
------------------SS-----S-----S-------------S----------------------------------
------S-----SSS-----S----------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--
-------S---------S----S------S-S--S---S----------------------------------S--S---
---------SSSSS-----S-----SS------------------SS----------S--------S----------S--
S--------S----------SSS-----------S-------S-------S-----------------S-S---------
-----S--S------S---S---SS-SSS-SSSSSS--SS-SSSSSSSSSS-SSSS-SSSS-S-S-SSS-----------
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-------S------S----------------------------------S----------------S-----S-------
-----S-------------------------S----S---S--------------
>forward_1050
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----------------------------------------------------------------------CCGATGGGTA
GTCCGTATGC----------------------------------------------------------------------
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>reverse_2418
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-----------------AGGCCAATCTTCTAGCGTCG-------------------------------------------
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