Multiple sequence alignment - TraesCS4D01G085000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G085000 chr4D 100.000 3224 0 0 1 3224 59411226 59414449 0.000000e+00 5954
1 TraesCS4D01G085000 chr4D 89.991 1119 105 6 1114 2226 58946176 58947293 0.000000e+00 1439
2 TraesCS4D01G085000 chr4D 86.947 452 30 15 819 1264 59023754 59024182 6.260000e-132 481
3 TraesCS4D01G085000 chr4D 87.234 235 17 7 1667 1893 59024182 59024411 4.130000e-64 255
4 TraesCS4D01G085000 chr4D 91.758 182 11 1 443 620 59023441 59023622 1.920000e-62 250
5 TraesCS4D01G085000 chr4B 94.154 2429 89 16 816 3224 88156835 88154440 0.000000e+00 3650
6 TraesCS4D01G085000 chr4B 89.276 1119 113 5 1114 2226 88404771 88403654 0.000000e+00 1395
7 TraesCS4D01G085000 chr4B 91.329 346 24 4 457 801 88157158 88156818 4.870000e-128 468
8 TraesCS4D01G085000 chr4A 92.780 2410 77 29 819 3224 537184252 537181936 0.000000e+00 3397
9 TraesCS4D01G085000 chr4A 89.276 1119 113 5 1114 2226 537274083 537272966 0.000000e+00 1395
10 TraesCS4D01G085000 chr4A 95.103 388 18 1 1 387 573312072 573312459 7.650000e-171 610
11 TraesCS4D01G085000 chr4A 87.560 418 41 9 388 801 537184648 537184238 1.050000e-129 473
12 TraesCS4D01G085000 chr1D 95.619 388 16 1 1 387 347791942 347792329 3.530000e-174 621
13 TraesCS4D01G085000 chr7D 95.361 388 17 1 1 387 403153238 403153625 1.640000e-172 616
14 TraesCS4D01G085000 chr7D 84.756 328 45 5 1879 2202 18833105 18832779 1.120000e-84 324
15 TraesCS4D01G085000 chr7A 94.898 392 19 1 1 391 634901108 634900717 2.130000e-171 612
16 TraesCS4D01G085000 chr7A 94.845 388 19 1 1 387 609140365 609139978 3.560000e-169 604
17 TraesCS4D01G085000 chr3D 94.859 389 18 2 1 387 587660411 587660799 9.890000e-170 606
18 TraesCS4D01G085000 chrUn 94.845 388 19 1 1 387 28776828 28776441 3.560000e-169 604
19 TraesCS4D01G085000 chr6A 94.845 388 19 1 1 387 578521888 578521501 3.560000e-169 604
20 TraesCS4D01G085000 chr1A 94.845 388 19 1 1 387 438326504 438326891 3.560000e-169 604
21 TraesCS4D01G085000 chr5D 86.562 320 39 2 1879 2194 59887303 59887622 1.840000e-92 350
22 TraesCS4D01G085000 chr5D 85.455 330 42 6 1879 2203 357018412 357018084 3.980000e-89 339
23 TraesCS4D01G085000 chr5B 84.894 331 42 4 1879 2203 271262427 271262755 8.620000e-86 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G085000 chr4D 59411226 59414449 3223 False 5954.000000 5954 100.000000 1 3224 1 chr4D.!!$F2 3223
1 TraesCS4D01G085000 chr4D 58946176 58947293 1117 False 1439.000000 1439 89.991000 1114 2226 1 chr4D.!!$F1 1112
2 TraesCS4D01G085000 chr4D 59023441 59024411 970 False 328.666667 481 88.646333 443 1893 3 chr4D.!!$F3 1450
3 TraesCS4D01G085000 chr4B 88154440 88157158 2718 True 2059.000000 3650 92.741500 457 3224 2 chr4B.!!$R2 2767
4 TraesCS4D01G085000 chr4B 88403654 88404771 1117 True 1395.000000 1395 89.276000 1114 2226 1 chr4B.!!$R1 1112
5 TraesCS4D01G085000 chr4A 537181936 537184648 2712 True 1935.000000 3397 90.170000 388 3224 2 chr4A.!!$R2 2836
6 TraesCS4D01G085000 chr4A 537272966 537274083 1117 True 1395.000000 1395 89.276000 1114 2226 1 chr4A.!!$R1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.029567 CGCCTCTCGTGATCCTGTAC 59.970 60.0 0.0 0.0 0.00 2.90 F
47 48 0.029567 GCCTCTCGTGATCCTGTACG 59.970 60.0 0.0 0.0 41.38 3.67 F
135 136 0.038744 ACGACTTCTTCCCCGACCTA 59.961 55.0 0.0 0.0 0.00 3.08 F
147 148 0.105039 CCGACCTAGGCAACCTCATC 59.895 60.0 9.3 0.0 34.61 2.92 F
148 149 0.105039 CGACCTAGGCAACCTCATCC 59.895 60.0 9.3 0.0 34.61 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1101 0.664761 TGTGTGAGCTTTGCTTCTGC 59.335 50.000 0.00 0.0 39.88 4.26 R
1314 1330 0.904865 AGACCAGATCCTCGTTGGCA 60.905 55.000 0.00 0.0 35.35 4.92 R
1665 1687 1.831389 GCGCGTTCTTGAGCTTGTCA 61.831 55.000 8.43 0.0 0.00 3.58 R
1827 1862 2.127869 CCGCTCGAATCCTCCCTGA 61.128 63.158 0.00 0.0 0.00 3.86 R
2402 2437 1.813092 GCGATGATTGATGCCTCCTGT 60.813 52.381 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.204059 AGAAGGGACAGCAGGCCT 60.204 61.111 0.00 0.00 0.00 5.19
18 19 1.849823 AGAAGGGACAGCAGGCCTT 60.850 57.895 0.00 0.00 0.00 4.35
19 20 1.377856 GAAGGGACAGCAGGCCTTC 60.378 63.158 0.00 0.00 0.00 3.46
20 21 3.259633 AAGGGACAGCAGGCCTTCG 62.260 63.158 0.00 0.00 0.00 3.79
21 22 4.785453 GGGACAGCAGGCCTTCGG 62.785 72.222 0.00 0.01 0.00 4.30
22 23 3.706373 GGACAGCAGGCCTTCGGA 61.706 66.667 9.83 0.00 0.00 4.55
23 24 2.347490 GACAGCAGGCCTTCGGAA 59.653 61.111 9.83 0.00 0.00 4.30
24 25 2.032681 ACAGCAGGCCTTCGGAAC 59.967 61.111 9.83 0.00 0.00 3.62
25 26 2.747855 CAGCAGGCCTTCGGAACC 60.748 66.667 0.00 0.00 0.00 3.62
26 27 4.035102 AGCAGGCCTTCGGAACCC 62.035 66.667 0.00 0.00 0.00 4.11
37 38 4.452733 GGAACCCCGCCTCTCGTG 62.453 72.222 0.00 0.00 36.19 4.35
38 39 3.379445 GAACCCCGCCTCTCGTGA 61.379 66.667 0.00 0.00 36.19 4.35
39 40 2.683933 AACCCCGCCTCTCGTGAT 60.684 61.111 0.00 0.00 36.19 3.06
40 41 2.630592 GAACCCCGCCTCTCGTGATC 62.631 65.000 0.00 0.00 36.19 2.92
41 42 3.917760 CCCCGCCTCTCGTGATCC 61.918 72.222 0.00 0.00 36.19 3.36
42 43 2.835431 CCCGCCTCTCGTGATCCT 60.835 66.667 0.00 0.00 36.19 3.24
43 44 2.415010 CCGCCTCTCGTGATCCTG 59.585 66.667 0.00 0.00 36.19 3.86
44 45 2.418910 CCGCCTCTCGTGATCCTGT 61.419 63.158 0.00 0.00 36.19 4.00
45 46 1.101635 CCGCCTCTCGTGATCCTGTA 61.102 60.000 0.00 0.00 36.19 2.74
46 47 0.029567 CGCCTCTCGTGATCCTGTAC 59.970 60.000 0.00 0.00 0.00 2.90
47 48 0.029567 GCCTCTCGTGATCCTGTACG 59.970 60.000 0.00 0.00 41.38 3.67
48 49 1.664873 CCTCTCGTGATCCTGTACGA 58.335 55.000 5.95 5.95 45.87 3.43
52 53 2.685850 TCGTGATCCTGTACGAGAGA 57.314 50.000 2.18 0.00 43.54 3.10
53 54 2.552031 TCGTGATCCTGTACGAGAGAG 58.448 52.381 2.18 0.00 43.54 3.20
54 55 1.600013 CGTGATCCTGTACGAGAGAGG 59.400 57.143 0.00 0.00 42.54 3.69
55 56 1.950909 GTGATCCTGTACGAGAGAGGG 59.049 57.143 5.66 0.00 39.21 4.30
56 57 1.133761 TGATCCTGTACGAGAGAGGGG 60.134 57.143 5.66 0.00 39.21 4.79
57 58 0.468400 ATCCTGTACGAGAGAGGGGC 60.468 60.000 5.66 0.00 39.21 5.80
58 59 2.482333 CCTGTACGAGAGAGGGGCG 61.482 68.421 0.00 0.00 34.80 6.13
59 60 1.451567 CTGTACGAGAGAGGGGCGA 60.452 63.158 0.00 0.00 0.00 5.54
60 61 0.820074 CTGTACGAGAGAGGGGCGAT 60.820 60.000 0.00 0.00 0.00 4.58
61 62 0.818445 TGTACGAGAGAGGGGCGATC 60.818 60.000 0.00 0.00 0.00 3.69
62 63 0.818445 GTACGAGAGAGGGGCGATCA 60.818 60.000 0.00 0.00 0.00 2.92
63 64 0.535328 TACGAGAGAGGGGCGATCAG 60.535 60.000 0.00 0.00 0.00 2.90
64 65 2.560119 CGAGAGAGGGGCGATCAGG 61.560 68.421 0.00 0.00 0.00 3.86
65 66 1.456705 GAGAGAGGGGCGATCAGGT 60.457 63.158 0.00 0.00 0.00 4.00
66 67 1.002274 AGAGAGGGGCGATCAGGTT 59.998 57.895 0.00 0.00 0.00 3.50
67 68 0.618968 AGAGAGGGGCGATCAGGTTT 60.619 55.000 0.00 0.00 0.00 3.27
68 69 0.253327 GAGAGGGGCGATCAGGTTTT 59.747 55.000 0.00 0.00 0.00 2.43
69 70 0.698818 AGAGGGGCGATCAGGTTTTT 59.301 50.000 0.00 0.00 0.00 1.94
70 71 0.811281 GAGGGGCGATCAGGTTTTTG 59.189 55.000 0.00 0.00 0.00 2.44
71 72 0.611896 AGGGGCGATCAGGTTTTTGG 60.612 55.000 0.00 0.00 0.00 3.28
72 73 1.604147 GGGGCGATCAGGTTTTTGGG 61.604 60.000 0.00 0.00 0.00 4.12
73 74 1.604147 GGGCGATCAGGTTTTTGGGG 61.604 60.000 0.00 0.00 0.00 4.96
74 75 0.610785 GGCGATCAGGTTTTTGGGGA 60.611 55.000 0.00 0.00 0.00 4.81
75 76 0.811281 GCGATCAGGTTTTTGGGGAG 59.189 55.000 0.00 0.00 0.00 4.30
76 77 0.811281 CGATCAGGTTTTTGGGGAGC 59.189 55.000 0.00 0.00 0.00 4.70
77 78 0.811281 GATCAGGTTTTTGGGGAGCG 59.189 55.000 0.00 0.00 0.00 5.03
78 79 1.250840 ATCAGGTTTTTGGGGAGCGC 61.251 55.000 0.00 0.00 0.00 5.92
79 80 2.197324 AGGTTTTTGGGGAGCGCA 59.803 55.556 11.47 0.00 0.00 6.09
80 81 2.200337 AGGTTTTTGGGGAGCGCAC 61.200 57.895 11.47 1.97 0.00 5.34
81 82 2.200337 GGTTTTTGGGGAGCGCACT 61.200 57.895 11.47 0.00 0.00 4.40
82 83 1.285950 GTTTTTGGGGAGCGCACTC 59.714 57.895 11.47 1.84 42.66 3.51
83 84 2.258013 TTTTTGGGGAGCGCACTCG 61.258 57.895 11.47 0.00 44.48 4.18
104 105 4.724602 GACTGCTGGCAGCGACGA 62.725 66.667 32.12 15.55 46.26 4.20
106 107 4.731612 CTGCTGGCAGCGACGACT 62.732 66.667 32.12 0.00 46.26 4.18
107 108 4.299547 TGCTGGCAGCGACGACTT 62.300 61.111 32.12 0.00 46.26 3.01
108 109 3.482783 GCTGGCAGCGACGACTTC 61.483 66.667 25.47 0.00 0.00 3.01
124 125 3.036577 TCGCCAACGACGACTTCT 58.963 55.556 0.00 0.00 45.12 2.85
125 126 1.361271 TCGCCAACGACGACTTCTT 59.639 52.632 0.00 0.00 45.12 2.52
126 127 0.662374 TCGCCAACGACGACTTCTTC 60.662 55.000 0.00 0.00 45.12 2.87
127 128 1.615107 CGCCAACGACGACTTCTTCC 61.615 60.000 0.00 0.00 43.93 3.46
128 129 1.289800 GCCAACGACGACTTCTTCCC 61.290 60.000 0.00 0.00 0.00 3.97
129 130 0.669625 CCAACGACGACTTCTTCCCC 60.670 60.000 0.00 0.00 0.00 4.81
130 131 1.007336 CAACGACGACTTCTTCCCCG 61.007 60.000 0.00 0.00 0.00 5.73
131 132 1.174712 AACGACGACTTCTTCCCCGA 61.175 55.000 0.00 0.00 0.00 5.14
132 133 1.154073 CGACGACTTCTTCCCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
133 134 1.214853 GACGACTTCTTCCCCGACC 59.785 63.158 0.00 0.00 0.00 4.79
134 135 1.228800 ACGACTTCTTCCCCGACCT 60.229 57.895 0.00 0.00 0.00 3.85
135 136 0.038744 ACGACTTCTTCCCCGACCTA 59.961 55.000 0.00 0.00 0.00 3.08
136 137 0.739561 CGACTTCTTCCCCGACCTAG 59.260 60.000 0.00 0.00 0.00 3.02
137 138 1.112950 GACTTCTTCCCCGACCTAGG 58.887 60.000 7.41 7.41 0.00 3.02
138 139 0.976590 ACTTCTTCCCCGACCTAGGC 60.977 60.000 9.30 0.36 0.00 3.93
139 140 0.976073 CTTCTTCCCCGACCTAGGCA 60.976 60.000 9.30 0.00 0.00 4.75
140 141 0.545787 TTCTTCCCCGACCTAGGCAA 60.546 55.000 9.30 0.00 0.00 4.52
141 142 1.221021 CTTCCCCGACCTAGGCAAC 59.779 63.158 9.30 0.00 0.00 4.17
142 143 2.253403 CTTCCCCGACCTAGGCAACC 62.253 65.000 9.30 0.00 37.17 3.77
143 144 2.687566 CCCCGACCTAGGCAACCT 60.688 66.667 9.30 0.00 37.71 3.50
144 145 2.732619 CCCCGACCTAGGCAACCTC 61.733 68.421 9.30 0.00 34.61 3.85
145 146 1.987855 CCCGACCTAGGCAACCTCA 60.988 63.158 9.30 0.00 34.61 3.86
146 147 1.338136 CCCGACCTAGGCAACCTCAT 61.338 60.000 9.30 0.00 34.61 2.90
147 148 0.105039 CCGACCTAGGCAACCTCATC 59.895 60.000 9.30 0.00 34.61 2.92
148 149 0.105039 CGACCTAGGCAACCTCATCC 59.895 60.000 9.30 0.00 34.61 3.51
149 150 1.501582 GACCTAGGCAACCTCATCCT 58.498 55.000 9.30 0.00 34.61 3.24
150 151 1.414550 GACCTAGGCAACCTCATCCTC 59.585 57.143 9.30 0.00 34.61 3.71
151 152 0.390860 CCTAGGCAACCTCATCCTCG 59.609 60.000 0.00 0.00 34.61 4.63
152 153 1.403814 CTAGGCAACCTCATCCTCGA 58.596 55.000 0.00 0.00 34.61 4.04
153 154 1.967066 CTAGGCAACCTCATCCTCGAT 59.033 52.381 0.00 0.00 34.61 3.59
154 155 0.467384 AGGCAACCTCATCCTCGATG 59.533 55.000 0.00 0.00 38.30 3.84
155 156 0.465705 GGCAACCTCATCCTCGATGA 59.534 55.000 4.38 4.38 45.35 2.92
156 157 1.576356 GCAACCTCATCCTCGATGAC 58.424 55.000 0.16 0.00 43.11 3.06
157 158 1.134699 GCAACCTCATCCTCGATGACA 60.135 52.381 0.16 0.00 43.11 3.58
158 159 2.484417 GCAACCTCATCCTCGATGACAT 60.484 50.000 0.16 0.00 43.11 3.06
159 160 3.129109 CAACCTCATCCTCGATGACATG 58.871 50.000 0.16 0.00 43.11 3.21
160 161 1.690893 ACCTCATCCTCGATGACATGG 59.309 52.381 0.00 4.04 43.11 3.66
161 162 1.001746 CCTCATCCTCGATGACATGGG 59.998 57.143 0.00 0.00 43.11 4.00
162 163 0.394192 TCATCCTCGATGACATGGGC 59.606 55.000 0.00 0.00 43.11 5.36
163 164 0.947660 CATCCTCGATGACATGGGCG 60.948 60.000 0.00 0.00 42.09 6.13
164 165 1.115326 ATCCTCGATGACATGGGCGA 61.115 55.000 0.00 0.00 0.00 5.54
165 166 1.592669 CCTCGATGACATGGGCGAC 60.593 63.158 0.00 0.00 0.00 5.19
166 167 1.141665 CTCGATGACATGGGCGACA 59.858 57.895 0.00 0.00 0.00 4.35
167 168 0.460109 CTCGATGACATGGGCGACAA 60.460 55.000 0.00 0.00 0.00 3.18
168 169 0.739462 TCGATGACATGGGCGACAAC 60.739 55.000 0.00 0.00 0.00 3.32
169 170 1.018752 CGATGACATGGGCGACAACA 61.019 55.000 0.00 0.00 0.00 3.33
170 171 0.447801 GATGACATGGGCGACAACAC 59.552 55.000 0.00 0.00 0.00 3.32
171 172 0.960364 ATGACATGGGCGACAACACC 60.960 55.000 0.00 0.00 0.00 4.16
172 173 1.599518 GACATGGGCGACAACACCA 60.600 57.895 0.00 0.00 38.88 4.17
173 174 1.152860 ACATGGGCGACAACACCAA 60.153 52.632 0.00 0.00 37.89 3.67
174 175 1.285641 CATGGGCGACAACACCAAC 59.714 57.895 0.00 0.00 37.89 3.77
175 176 2.258013 ATGGGCGACAACACCAACG 61.258 57.895 0.00 0.00 37.89 4.10
178 179 4.659874 GCGACAACACCAACGCCG 62.660 66.667 0.00 0.00 44.27 6.46
179 180 4.007940 CGACAACACCAACGCCGG 62.008 66.667 0.00 0.00 0.00 6.13
180 181 4.322385 GACAACACCAACGCCGGC 62.322 66.667 19.07 19.07 0.00 6.13
202 203 4.988598 CTGTTCCCGCTGCACCGT 62.989 66.667 0.00 0.00 0.00 4.83
203 204 3.583276 CTGTTCCCGCTGCACCGTA 62.583 63.158 0.00 0.00 0.00 4.02
204 205 2.125269 GTTCCCGCTGCACCGTAT 60.125 61.111 0.00 0.00 0.00 3.06
205 206 2.125310 TTCCCGCTGCACCGTATG 60.125 61.111 0.00 0.00 0.00 2.39
206 207 2.949909 TTCCCGCTGCACCGTATGT 61.950 57.895 0.00 0.00 0.00 2.29
221 222 6.732896 ACCGTATGTGATTCTATCCTTCTT 57.267 37.500 0.00 0.00 0.00 2.52
222 223 6.516718 ACCGTATGTGATTCTATCCTTCTTG 58.483 40.000 0.00 0.00 0.00 3.02
223 224 6.098409 ACCGTATGTGATTCTATCCTTCTTGT 59.902 38.462 0.00 0.00 0.00 3.16
224 225 6.986817 CCGTATGTGATTCTATCCTTCTTGTT 59.013 38.462 0.00 0.00 0.00 2.83
225 226 7.169982 CCGTATGTGATTCTATCCTTCTTGTTC 59.830 40.741 0.00 0.00 0.00 3.18
226 227 7.096436 CGTATGTGATTCTATCCTTCTTGTTCG 60.096 40.741 0.00 0.00 0.00 3.95
227 228 6.280855 TGTGATTCTATCCTTCTTGTTCGA 57.719 37.500 0.00 0.00 0.00 3.71
228 229 6.333416 TGTGATTCTATCCTTCTTGTTCGAG 58.667 40.000 0.00 0.00 0.00 4.04
229 230 6.152831 TGTGATTCTATCCTTCTTGTTCGAGA 59.847 38.462 0.00 0.00 0.00 4.04
230 231 7.147828 TGTGATTCTATCCTTCTTGTTCGAGAT 60.148 37.037 0.00 0.00 0.00 2.75
231 232 8.353684 GTGATTCTATCCTTCTTGTTCGAGATA 58.646 37.037 0.00 0.00 0.00 1.98
232 233 8.572185 TGATTCTATCCTTCTTGTTCGAGATAG 58.428 37.037 7.42 7.42 36.23 2.08
233 234 7.883391 TTCTATCCTTCTTGTTCGAGATAGT 57.117 36.000 11.54 0.00 36.29 2.12
234 235 7.265647 TCTATCCTTCTTGTTCGAGATAGTG 57.734 40.000 11.54 0.00 36.29 2.74
235 236 4.720649 TCCTTCTTGTTCGAGATAGTGG 57.279 45.455 0.00 0.00 0.00 4.00
236 237 4.087182 TCCTTCTTGTTCGAGATAGTGGT 58.913 43.478 0.00 0.00 0.00 4.16
237 238 5.258841 TCCTTCTTGTTCGAGATAGTGGTA 58.741 41.667 0.00 0.00 0.00 3.25
238 239 5.357314 TCCTTCTTGTTCGAGATAGTGGTAG 59.643 44.000 0.00 0.00 0.00 3.18
239 240 5.357314 CCTTCTTGTTCGAGATAGTGGTAGA 59.643 44.000 0.00 0.00 0.00 2.59
240 241 6.127703 CCTTCTTGTTCGAGATAGTGGTAGAA 60.128 42.308 0.00 0.00 0.00 2.10
241 242 7.406031 TTCTTGTTCGAGATAGTGGTAGAAT 57.594 36.000 0.00 0.00 0.00 2.40
242 243 7.406031 TCTTGTTCGAGATAGTGGTAGAATT 57.594 36.000 0.00 0.00 0.00 2.17
243 244 7.481642 TCTTGTTCGAGATAGTGGTAGAATTC 58.518 38.462 0.00 0.00 0.00 2.17
244 245 6.769134 TGTTCGAGATAGTGGTAGAATTCA 57.231 37.500 8.44 0.00 0.00 2.57
245 246 7.348080 TGTTCGAGATAGTGGTAGAATTCAT 57.652 36.000 8.44 0.00 0.00 2.57
246 247 7.203218 TGTTCGAGATAGTGGTAGAATTCATG 58.797 38.462 8.44 0.00 0.00 3.07
247 248 6.961360 TCGAGATAGTGGTAGAATTCATGT 57.039 37.500 8.44 0.00 0.00 3.21
248 249 7.348080 TCGAGATAGTGGTAGAATTCATGTT 57.652 36.000 8.44 0.00 0.00 2.71
249 250 7.782049 TCGAGATAGTGGTAGAATTCATGTTT 58.218 34.615 8.44 0.00 0.00 2.83
250 251 7.921214 TCGAGATAGTGGTAGAATTCATGTTTC 59.079 37.037 8.44 0.00 0.00 2.78
251 252 7.923344 CGAGATAGTGGTAGAATTCATGTTTCT 59.077 37.037 8.44 14.90 37.25 2.52
257 258 9.823647 AGTGGTAGAATTCATGTTTCTAGTATG 57.176 33.333 16.18 0.00 36.59 2.39
258 259 9.601217 GTGGTAGAATTCATGTTTCTAGTATGT 57.399 33.333 16.18 0.00 36.59 2.29
259 260 9.599866 TGGTAGAATTCATGTTTCTAGTATGTG 57.400 33.333 16.18 0.00 36.59 3.21
260 261 9.601217 GGTAGAATTCATGTTTCTAGTATGTGT 57.399 33.333 16.18 0.00 36.59 3.72
262 263 8.723942 AGAATTCATGTTTCTAGTATGTGTCC 57.276 34.615 8.44 0.00 31.75 4.02
263 264 8.543774 AGAATTCATGTTTCTAGTATGTGTCCT 58.456 33.333 8.44 0.00 31.75 3.85
264 265 9.817809 GAATTCATGTTTCTAGTATGTGTCCTA 57.182 33.333 0.00 0.00 0.00 2.94
265 266 9.823647 AATTCATGTTTCTAGTATGTGTCCTAG 57.176 33.333 0.00 0.00 33.46 3.02
266 267 8.589701 TTCATGTTTCTAGTATGTGTCCTAGA 57.410 34.615 0.00 0.00 38.26 2.43
267 268 8.768501 TCATGTTTCTAGTATGTGTCCTAGAT 57.231 34.615 0.00 0.00 39.40 1.98
268 269 8.633561 TCATGTTTCTAGTATGTGTCCTAGATG 58.366 37.037 0.00 0.00 39.40 2.90
269 270 7.956328 TGTTTCTAGTATGTGTCCTAGATGT 57.044 36.000 0.00 0.00 39.40 3.06
270 271 7.772166 TGTTTCTAGTATGTGTCCTAGATGTG 58.228 38.462 0.00 0.00 39.40 3.21
271 272 7.614192 TGTTTCTAGTATGTGTCCTAGATGTGA 59.386 37.037 0.00 0.00 39.40 3.58
272 273 8.634444 GTTTCTAGTATGTGTCCTAGATGTGAT 58.366 37.037 0.00 0.00 39.40 3.06
273 274 9.862149 TTTCTAGTATGTGTCCTAGATGTGATA 57.138 33.333 0.00 0.00 39.40 2.15
275 276 9.454859 TCTAGTATGTGTCCTAGATGTGATATG 57.545 37.037 0.00 0.00 35.82 1.78
276 277 9.237187 CTAGTATGTGTCCTAGATGTGATATGT 57.763 37.037 0.00 0.00 33.93 2.29
277 278 8.484214 AGTATGTGTCCTAGATGTGATATGTT 57.516 34.615 0.00 0.00 0.00 2.71
278 279 8.580720 AGTATGTGTCCTAGATGTGATATGTTC 58.419 37.037 0.00 0.00 0.00 3.18
279 280 6.790232 TGTGTCCTAGATGTGATATGTTCA 57.210 37.500 0.00 0.00 0.00 3.18
280 281 7.365497 TGTGTCCTAGATGTGATATGTTCAT 57.635 36.000 0.00 0.00 36.54 2.57
281 282 7.436933 TGTGTCCTAGATGTGATATGTTCATC 58.563 38.462 0.00 0.00 36.54 2.92
282 283 7.288621 TGTGTCCTAGATGTGATATGTTCATCT 59.711 37.037 14.24 14.24 46.33 2.90
283 284 8.797438 GTGTCCTAGATGTGATATGTTCATCTA 58.203 37.037 14.72 14.72 43.98 1.98
284 285 8.797438 TGTCCTAGATGTGATATGTTCATCTAC 58.203 37.037 12.88 9.38 43.98 2.59
285 286 9.019656 GTCCTAGATGTGATATGTTCATCTACT 57.980 37.037 12.88 0.00 43.98 2.57
290 291 9.033711 AGATGTGATATGTTCATCTACTATGCT 57.966 33.333 10.33 0.00 43.98 3.79
293 294 9.301897 TGTGATATGTTCATCTACTATGCTAGT 57.698 33.333 0.00 2.19 38.55 2.57
296 297 9.497030 GATATGTTCATCTACTATGCTAGTTCG 57.503 37.037 1.93 0.00 40.14 3.95
297 298 5.520632 TGTTCATCTACTATGCTAGTTCGC 58.479 41.667 1.93 0.00 40.14 4.70
298 299 5.067283 TGTTCATCTACTATGCTAGTTCGCA 59.933 40.000 1.93 0.00 45.10 5.10
311 312 7.786178 TGCTAGTTCGCATGATTAGTTTAAT 57.214 32.000 0.00 0.00 34.44 1.40
312 313 7.851508 TGCTAGTTCGCATGATTAGTTTAATC 58.148 34.615 0.00 2.61 38.95 1.75
313 314 7.710907 TGCTAGTTCGCATGATTAGTTTAATCT 59.289 33.333 0.00 0.00 39.09 2.40
314 315 8.217778 GCTAGTTCGCATGATTAGTTTAATCTC 58.782 37.037 0.00 0.79 43.79 2.75
315 316 9.469807 CTAGTTCGCATGATTAGTTTAATCTCT 57.530 33.333 0.00 0.00 43.79 3.10
316 317 8.136057 AGTTCGCATGATTAGTTTAATCTCTG 57.864 34.615 0.00 8.20 43.79 3.35
317 318 6.530913 TCGCATGATTAGTTTAATCTCTGC 57.469 37.500 17.42 17.42 43.79 4.26
318 319 6.283694 TCGCATGATTAGTTTAATCTCTGCT 58.716 36.000 20.98 0.00 43.84 4.24
319 320 7.433680 TCGCATGATTAGTTTAATCTCTGCTA 58.566 34.615 20.98 14.36 43.84 3.49
320 321 8.090831 TCGCATGATTAGTTTAATCTCTGCTAT 58.909 33.333 20.98 4.57 43.84 2.97
321 322 8.715998 CGCATGATTAGTTTAATCTCTGCTATT 58.284 33.333 20.98 0.00 43.84 1.73
322 323 9.823098 GCATGATTAGTTTAATCTCTGCTATTG 57.177 33.333 18.75 5.98 43.34 1.90
328 329 9.719355 TTAGTTTAATCTCTGCTATTGTTGTCA 57.281 29.630 0.00 0.00 0.00 3.58
329 330 8.798859 AGTTTAATCTCTGCTATTGTTGTCAT 57.201 30.769 0.00 0.00 0.00 3.06
330 331 8.671921 AGTTTAATCTCTGCTATTGTTGTCATG 58.328 33.333 0.00 0.00 0.00 3.07
331 332 8.668353 GTTTAATCTCTGCTATTGTTGTCATGA 58.332 33.333 0.00 0.00 0.00 3.07
332 333 8.969260 TTAATCTCTGCTATTGTTGTCATGAT 57.031 30.769 0.00 0.00 0.00 2.45
333 334 7.876936 AATCTCTGCTATTGTTGTCATGATT 57.123 32.000 0.00 0.00 0.00 2.57
334 335 7.876936 ATCTCTGCTATTGTTGTCATGATTT 57.123 32.000 0.00 0.00 0.00 2.17
335 336 8.969260 ATCTCTGCTATTGTTGTCATGATTTA 57.031 30.769 0.00 0.00 0.00 1.40
336 337 8.969260 TCTCTGCTATTGTTGTCATGATTTAT 57.031 30.769 0.00 0.00 0.00 1.40
337 338 8.833493 TCTCTGCTATTGTTGTCATGATTTATG 58.167 33.333 0.00 0.00 38.17 1.90
338 339 8.510243 TCTGCTATTGTTGTCATGATTTATGT 57.490 30.769 0.00 0.00 38.01 2.29
339 340 8.959548 TCTGCTATTGTTGTCATGATTTATGTT 58.040 29.630 0.00 0.00 38.01 2.71
340 341 9.229784 CTGCTATTGTTGTCATGATTTATGTTC 57.770 33.333 0.00 0.00 38.01 3.18
341 342 8.959548 TGCTATTGTTGTCATGATTTATGTTCT 58.040 29.630 0.00 0.00 38.01 3.01
342 343 9.229784 GCTATTGTTGTCATGATTTATGTTCTG 57.770 33.333 0.00 0.00 38.01 3.02
345 346 9.985730 ATTGTTGTCATGATTTATGTTCTGTTT 57.014 25.926 0.00 0.00 38.01 2.83
382 383 9.860898 AATCTTGTAGTAATTTGCTCATTTTCC 57.139 29.630 0.00 0.00 0.00 3.13
383 384 8.402798 TCTTGTAGTAATTTGCTCATTTTCCA 57.597 30.769 0.00 0.00 0.00 3.53
384 385 8.855110 TCTTGTAGTAATTTGCTCATTTTCCAA 58.145 29.630 0.00 0.00 0.00 3.53
385 386 8.810652 TTGTAGTAATTTGCTCATTTTCCAAC 57.189 30.769 0.00 0.00 0.00 3.77
386 387 7.946207 TGTAGTAATTTGCTCATTTTCCAACA 58.054 30.769 0.00 0.00 0.00 3.33
396 397 5.106673 GCTCATTTTCCAACACCTACTACAC 60.107 44.000 0.00 0.00 0.00 2.90
403 404 4.464951 TCCAACACCTACTACACATAGTGG 59.535 45.833 1.93 0.00 41.92 4.00
404 405 4.222145 CCAACACCTACTACACATAGTGGT 59.778 45.833 1.93 1.20 44.78 4.16
406 407 3.782046 CACCTACTACACATAGTGGTGC 58.218 50.000 16.23 0.00 44.47 5.01
419 420 3.385193 AGTGGTGCATAAAAGTTTGCC 57.615 42.857 0.00 0.00 38.08 4.52
420 421 2.037121 AGTGGTGCATAAAAGTTTGCCC 59.963 45.455 0.00 0.00 38.08 5.36
422 423 1.623311 GGTGCATAAAAGTTTGCCCCT 59.377 47.619 0.00 0.00 38.08 4.79
431 434 4.626745 TTTGCCCCTCCCCCTCCA 62.627 66.667 0.00 0.00 0.00 3.86
474 477 9.976511 CAGTTTGCATATTATCCATTGAAGATT 57.023 29.630 0.00 0.00 0.00 2.40
496 499 9.632638 AGATTAATTACAGGCACAATCAATAGT 57.367 29.630 0.00 0.00 0.00 2.12
521 524 9.803315 GTTTTTCTCACTCTAAAATCAAAAGGT 57.197 29.630 0.00 0.00 0.00 3.50
555 562 5.700832 AGAAGACTTTGATGTGTTTCGCATA 59.299 36.000 0.00 0.00 34.53 3.14
556 563 5.283060 AGACTTTGATGTGTTTCGCATAC 57.717 39.130 0.00 0.00 34.53 2.39
572 579 7.569639 TTCGCATACAGTCTTCTACTTATCT 57.430 36.000 0.00 0.00 35.76 1.98
609 616 1.883275 CCAATGGTTTGCACTTACCGA 59.117 47.619 7.19 0.00 37.23 4.69
676 684 4.918810 AATTTACAAATCTCATCCCGGC 57.081 40.909 0.00 0.00 0.00 6.13
691 699 1.129811 CCCGGCTTCGTTGTGATAAAC 59.870 52.381 0.00 0.00 0.00 2.01
740 750 8.479313 AGAAAAGAAAAAGACAACCAATCAAC 57.521 30.769 0.00 0.00 0.00 3.18
753 763 5.009854 ACCAATCAACCAAAAAGTCACTG 57.990 39.130 0.00 0.00 0.00 3.66
791 801 9.889128 AATACATTGTCCAATTATTGAAAAGGG 57.111 29.630 6.50 0.00 0.00 3.95
792 802 6.172630 ACATTGTCCAATTATTGAAAAGGGC 58.827 36.000 6.50 0.00 0.00 5.19
793 803 5.815233 TTGTCCAATTATTGAAAAGGGCA 57.185 34.783 6.50 0.00 0.00 5.36
794 804 6.371595 TTGTCCAATTATTGAAAAGGGCAT 57.628 33.333 6.50 0.00 30.20 4.40
795 805 6.371595 TGTCCAATTATTGAAAAGGGCATT 57.628 33.333 6.50 0.00 0.00 3.56
796 806 6.405538 TGTCCAATTATTGAAAAGGGCATTC 58.594 36.000 6.50 0.00 0.00 2.67
797 807 6.013898 TGTCCAATTATTGAAAAGGGCATTCA 60.014 34.615 6.50 0.00 35.11 2.57
798 808 6.536224 GTCCAATTATTGAAAAGGGCATTCAG 59.464 38.462 6.50 0.00 38.01 3.02
799 809 6.213195 TCCAATTATTGAAAAGGGCATTCAGT 59.787 34.615 6.50 0.00 38.01 3.41
800 810 6.880529 CCAATTATTGAAAAGGGCATTCAGTT 59.119 34.615 6.50 0.00 38.01 3.16
801 811 7.391275 CCAATTATTGAAAAGGGCATTCAGTTT 59.609 33.333 6.50 0.00 38.01 2.66
802 812 8.785946 CAATTATTGAAAAGGGCATTCAGTTTT 58.214 29.630 0.00 0.00 38.01 2.43
803 813 8.922931 ATTATTGAAAAGGGCATTCAGTTTTT 57.077 26.923 0.00 0.00 38.01 1.94
929 939 0.715551 GCCGCTTGCAATTGCTTTAC 59.284 50.000 29.37 15.67 42.66 2.01
939 949 7.330700 GCTTGCAATTGCTTTACCATAAAGTTA 59.669 33.333 29.37 1.93 42.66 2.24
958 968 8.862550 AAAGTTATTGCTTTCTCAACTTCAAG 57.137 30.769 0.00 0.00 38.21 3.02
961 971 8.686334 AGTTATTGCTTTCTCAACTTCAAGAAA 58.314 29.630 0.00 0.00 38.76 2.52
1086 1101 0.388659 CGGAGAGAGGCATCCAGAAG 59.611 60.000 0.00 0.00 35.14 2.85
1151 1167 3.148084 CCGTGTCCAAGAGTGGGT 58.852 61.111 0.00 0.00 46.01 4.51
1686 1708 0.319555 ACAAGCTCAAGAACGCGCTA 60.320 50.000 5.73 0.00 31.48 4.26
2445 2480 7.545965 TCGCCAAGAAGAAAACAACAAAAATAA 59.454 29.630 0.00 0.00 0.00 1.40
2462 2497 9.740710 ACAAAAATAACTAGAGGATTGTAGCTT 57.259 29.630 0.00 0.00 0.00 3.74
2463 2498 9.994432 CAAAAATAACTAGAGGATTGTAGCTTG 57.006 33.333 0.00 0.00 0.00 4.01
2464 2499 9.740710 AAAAATAACTAGAGGATTGTAGCTTGT 57.259 29.630 0.00 0.00 0.00 3.16
2465 2500 8.950208 AAATAACTAGAGGATTGTAGCTTGTC 57.050 34.615 0.00 0.00 0.00 3.18
2466 2501 5.346181 AACTAGAGGATTGTAGCTTGTCC 57.654 43.478 0.00 0.00 0.00 4.02
2523 2558 0.105709 CTCTCCTCCCTCCCCTCTTC 60.106 65.000 0.00 0.00 0.00 2.87
2579 2614 0.738389 CAGCGTGGTGTTTTGGTTCT 59.262 50.000 0.00 0.00 0.00 3.01
2580 2615 1.944024 CAGCGTGGTGTTTTGGTTCTA 59.056 47.619 0.00 0.00 0.00 2.10
2581 2616 1.944709 AGCGTGGTGTTTTGGTTCTAC 59.055 47.619 0.00 0.00 0.00 2.59
2582 2617 1.671845 GCGTGGTGTTTTGGTTCTACA 59.328 47.619 0.00 0.00 0.00 2.74
2583 2618 2.286772 GCGTGGTGTTTTGGTTCTACAG 60.287 50.000 0.00 0.00 0.00 2.74
2679 2714 2.762887 CTGTCCAGATCCAGTTCTGCTA 59.237 50.000 0.95 0.00 41.50 3.49
2684 2719 2.168106 CAGATCCAGTTCTGCTACTGCT 59.832 50.000 8.19 0.16 43.31 4.24
2722 2757 2.092753 ACGCCATCTCAAATGTCCATCT 60.093 45.455 0.00 0.00 0.00 2.90
2724 2759 2.034305 GCCATCTCAAATGTCCATCTGC 59.966 50.000 0.00 0.00 0.00 4.26
2812 2847 9.490663 CATCTTTACGTTTCTTTCCATACAATC 57.509 33.333 0.00 0.00 0.00 2.67
2859 2894 3.531538 GTCCTATTCAATTGGTGCTCGA 58.468 45.455 5.42 0.00 0.00 4.04
2860 2895 4.130118 GTCCTATTCAATTGGTGCTCGAT 58.870 43.478 5.42 0.00 0.00 3.59
2861 2896 4.212214 GTCCTATTCAATTGGTGCTCGATC 59.788 45.833 5.42 0.00 0.00 3.69
2862 2897 3.185188 CCTATTCAATTGGTGCTCGATCG 59.815 47.826 9.36 9.36 0.00 3.69
2982 3021 1.750399 AGCAAACCGGCCAGCTATG 60.750 57.895 12.77 0.00 35.19 2.23
3025 3064 1.048601 ACGTCGCCATCCAAGGATAT 58.951 50.000 0.40 0.00 32.93 1.63
3037 3076 3.196039 TCCAAGGATATGAACGAACGGAA 59.804 43.478 0.00 0.00 0.00 4.30
3131 3193 1.197036 GCGGCTTTTATTATCGGGAGC 59.803 52.381 0.00 0.00 0.00 4.70
3132 3194 2.489971 CGGCTTTTATTATCGGGAGCA 58.510 47.619 0.00 0.00 32.01 4.26
3133 3195 2.480419 CGGCTTTTATTATCGGGAGCAG 59.520 50.000 0.00 0.00 32.01 4.24
3134 3196 3.477530 GGCTTTTATTATCGGGAGCAGT 58.522 45.455 0.00 0.00 32.01 4.40
3135 3197 3.498777 GGCTTTTATTATCGGGAGCAGTC 59.501 47.826 0.00 0.00 32.01 3.51
3136 3198 3.498777 GCTTTTATTATCGGGAGCAGTCC 59.501 47.826 0.00 0.00 43.05 3.85
3137 3199 4.743955 GCTTTTATTATCGGGAGCAGTCCT 60.744 45.833 0.00 0.00 43.36 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.377856 GAAGGCCTGCTGTCCCTTC 60.378 63.158 5.69 18.10 45.36 3.46
2 3 2.759795 GAAGGCCTGCTGTCCCTT 59.240 61.111 5.69 11.06 41.46 3.95
4 5 4.785453 CCGAAGGCCTGCTGTCCC 62.785 72.222 5.69 0.00 46.14 4.46
20 21 4.452733 CACGAGAGGCGGGGTTCC 62.453 72.222 0.00 0.00 46.49 3.62
21 22 2.630592 GATCACGAGAGGCGGGGTTC 62.631 65.000 0.00 0.00 45.52 3.62
22 23 2.683933 ATCACGAGAGGCGGGGTT 60.684 61.111 0.00 0.00 45.52 4.11
23 24 3.148279 GATCACGAGAGGCGGGGT 61.148 66.667 0.00 0.00 45.52 4.95
24 25 3.917760 GGATCACGAGAGGCGGGG 61.918 72.222 0.00 0.00 45.52 5.73
26 27 1.101635 TACAGGATCACGAGAGGCGG 61.102 60.000 0.00 0.00 46.49 6.13
28 29 0.029567 CGTACAGGATCACGAGAGGC 59.970 60.000 0.00 0.00 40.56 4.70
29 30 1.664873 TCGTACAGGATCACGAGAGG 58.335 55.000 2.18 0.00 41.89 3.69
33 34 2.552031 CTCTCTCGTACAGGATCACGA 58.448 52.381 5.95 5.95 44.32 4.35
34 35 1.600013 CCTCTCTCGTACAGGATCACG 59.400 57.143 0.00 0.00 39.48 4.35
35 36 1.950909 CCCTCTCTCGTACAGGATCAC 59.049 57.143 0.00 0.00 0.00 3.06
36 37 1.133761 CCCCTCTCTCGTACAGGATCA 60.134 57.143 0.00 0.00 0.00 2.92
37 38 1.611519 CCCCTCTCTCGTACAGGATC 58.388 60.000 0.00 0.00 0.00 3.36
38 39 0.468400 GCCCCTCTCTCGTACAGGAT 60.468 60.000 0.00 0.00 0.00 3.24
39 40 1.076923 GCCCCTCTCTCGTACAGGA 60.077 63.158 0.00 0.00 0.00 3.86
40 41 2.482333 CGCCCCTCTCTCGTACAGG 61.482 68.421 0.00 0.00 0.00 4.00
41 42 0.820074 ATCGCCCCTCTCTCGTACAG 60.820 60.000 0.00 0.00 0.00 2.74
42 43 0.818445 GATCGCCCCTCTCTCGTACA 60.818 60.000 0.00 0.00 0.00 2.90
43 44 0.818445 TGATCGCCCCTCTCTCGTAC 60.818 60.000 0.00 0.00 0.00 3.67
44 45 0.535328 CTGATCGCCCCTCTCTCGTA 60.535 60.000 0.00 0.00 0.00 3.43
45 46 1.826054 CTGATCGCCCCTCTCTCGT 60.826 63.158 0.00 0.00 0.00 4.18
46 47 2.560119 CCTGATCGCCCCTCTCTCG 61.560 68.421 0.00 0.00 0.00 4.04
47 48 1.045911 AACCTGATCGCCCCTCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
48 49 0.618968 AAACCTGATCGCCCCTCTCT 60.619 55.000 0.00 0.00 0.00 3.10
49 50 0.253327 AAAACCTGATCGCCCCTCTC 59.747 55.000 0.00 0.00 0.00 3.20
50 51 0.698818 AAAAACCTGATCGCCCCTCT 59.301 50.000 0.00 0.00 0.00 3.69
51 52 0.811281 CAAAAACCTGATCGCCCCTC 59.189 55.000 0.00 0.00 0.00 4.30
52 53 0.611896 CCAAAAACCTGATCGCCCCT 60.612 55.000 0.00 0.00 0.00 4.79
53 54 1.604147 CCCAAAAACCTGATCGCCCC 61.604 60.000 0.00 0.00 0.00 5.80
54 55 1.604147 CCCCAAAAACCTGATCGCCC 61.604 60.000 0.00 0.00 0.00 6.13
55 56 0.610785 TCCCCAAAAACCTGATCGCC 60.611 55.000 0.00 0.00 0.00 5.54
56 57 0.811281 CTCCCCAAAAACCTGATCGC 59.189 55.000 0.00 0.00 0.00 4.58
57 58 0.811281 GCTCCCCAAAAACCTGATCG 59.189 55.000 0.00 0.00 0.00 3.69
58 59 0.811281 CGCTCCCCAAAAACCTGATC 59.189 55.000 0.00 0.00 0.00 2.92
59 60 1.250840 GCGCTCCCCAAAAACCTGAT 61.251 55.000 0.00 0.00 0.00 2.90
60 61 1.901464 GCGCTCCCCAAAAACCTGA 60.901 57.895 0.00 0.00 0.00 3.86
61 62 2.199652 TGCGCTCCCCAAAAACCTG 61.200 57.895 9.73 0.00 0.00 4.00
62 63 2.197324 TGCGCTCCCCAAAAACCT 59.803 55.556 9.73 0.00 0.00 3.50
63 64 2.142357 GAGTGCGCTCCCCAAAAACC 62.142 60.000 16.69 0.00 35.76 3.27
64 65 1.285950 GAGTGCGCTCCCCAAAAAC 59.714 57.895 16.69 0.00 35.76 2.43
65 66 2.258013 CGAGTGCGCTCCCCAAAAA 61.258 57.895 21.21 0.00 38.49 1.94
66 67 2.668212 CGAGTGCGCTCCCCAAAA 60.668 61.111 21.21 0.00 38.49 2.44
87 88 4.724602 TCGTCGCTGCCAGCAGTC 62.725 66.667 18.21 11.73 42.58 3.51
89 90 4.731612 AGTCGTCGCTGCCAGCAG 62.732 66.667 18.21 15.34 42.58 4.24
90 91 4.299547 AAGTCGTCGCTGCCAGCA 62.300 61.111 18.21 0.79 42.58 4.41
91 92 3.482783 GAAGTCGTCGCTGCCAGC 61.483 66.667 6.63 6.63 38.02 4.85
92 93 3.175240 CGAAGTCGTCGCTGCCAG 61.175 66.667 0.00 0.00 44.14 4.85
107 108 0.662374 GAAGAAGTCGTCGTTGGCGA 60.662 55.000 0.00 0.00 45.79 5.54
108 109 1.615107 GGAAGAAGTCGTCGTTGGCG 61.615 60.000 0.00 0.00 39.92 5.69
109 110 1.289800 GGGAAGAAGTCGTCGTTGGC 61.290 60.000 0.00 0.00 0.00 4.52
110 111 0.669625 GGGGAAGAAGTCGTCGTTGG 60.670 60.000 0.00 0.00 0.00 3.77
111 112 1.007336 CGGGGAAGAAGTCGTCGTTG 61.007 60.000 0.00 0.00 0.00 4.10
112 113 1.174712 TCGGGGAAGAAGTCGTCGTT 61.175 55.000 0.00 0.00 0.00 3.85
113 114 1.601759 TCGGGGAAGAAGTCGTCGT 60.602 57.895 0.00 0.00 0.00 4.34
114 115 1.154073 GTCGGGGAAGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
115 116 1.214853 GGTCGGGGAAGAAGTCGTC 59.785 63.158 0.00 0.00 0.00 4.20
116 117 0.038744 TAGGTCGGGGAAGAAGTCGT 59.961 55.000 0.00 0.00 0.00 4.34
117 118 0.739561 CTAGGTCGGGGAAGAAGTCG 59.260 60.000 0.00 0.00 0.00 4.18
118 119 1.112950 CCTAGGTCGGGGAAGAAGTC 58.887 60.000 0.00 0.00 0.00 3.01
119 120 0.976590 GCCTAGGTCGGGGAAGAAGT 60.977 60.000 11.31 0.00 0.00 3.01
120 121 0.976073 TGCCTAGGTCGGGGAAGAAG 60.976 60.000 11.31 0.00 0.00 2.85
121 122 0.545787 TTGCCTAGGTCGGGGAAGAA 60.546 55.000 11.31 0.00 30.85 2.52
122 123 1.079621 TTGCCTAGGTCGGGGAAGA 59.920 57.895 11.31 0.00 30.85 2.87
123 124 1.221021 GTTGCCTAGGTCGGGGAAG 59.779 63.158 11.31 0.00 34.96 3.46
124 125 2.295602 GGTTGCCTAGGTCGGGGAA 61.296 63.158 11.31 0.00 0.00 3.97
125 126 2.686106 GGTTGCCTAGGTCGGGGA 60.686 66.667 11.31 0.00 0.00 4.81
126 127 2.687566 AGGTTGCCTAGGTCGGGG 60.688 66.667 11.31 0.00 28.47 5.73
127 128 1.338136 ATGAGGTTGCCTAGGTCGGG 61.338 60.000 11.31 0.00 31.76 5.14
128 129 0.105039 GATGAGGTTGCCTAGGTCGG 59.895 60.000 11.31 0.00 31.76 4.79
129 130 0.105039 GGATGAGGTTGCCTAGGTCG 59.895 60.000 11.31 0.00 31.76 4.79
130 131 1.414550 GAGGATGAGGTTGCCTAGGTC 59.585 57.143 11.31 3.32 31.76 3.85
131 132 1.501582 GAGGATGAGGTTGCCTAGGT 58.498 55.000 11.31 0.00 31.76 3.08
132 133 0.390860 CGAGGATGAGGTTGCCTAGG 59.609 60.000 3.67 3.67 31.76 3.02
133 134 1.403814 TCGAGGATGAGGTTGCCTAG 58.596 55.000 0.00 0.00 31.76 3.02
134 135 1.688735 CATCGAGGATGAGGTTGCCTA 59.311 52.381 0.00 0.00 42.09 3.93
135 136 0.467384 CATCGAGGATGAGGTTGCCT 59.533 55.000 0.00 0.00 42.09 4.75
136 137 0.465705 TCATCGAGGATGAGGTTGCC 59.534 55.000 0.00 0.00 43.11 4.52
143 144 0.394192 GCCCATGTCATCGAGGATGA 59.606 55.000 1.86 4.27 45.35 2.92
144 145 0.947660 CGCCCATGTCATCGAGGATG 60.948 60.000 1.86 0.00 41.00 3.51
145 146 1.115326 TCGCCCATGTCATCGAGGAT 61.115 55.000 1.86 0.00 0.00 3.24
146 147 1.756561 TCGCCCATGTCATCGAGGA 60.757 57.895 0.00 0.00 0.00 3.71
147 148 1.592669 GTCGCCCATGTCATCGAGG 60.593 63.158 0.00 0.00 0.00 4.63
148 149 0.460109 TTGTCGCCCATGTCATCGAG 60.460 55.000 0.00 0.00 0.00 4.04
149 150 0.739462 GTTGTCGCCCATGTCATCGA 60.739 55.000 0.00 0.00 0.00 3.59
150 151 1.018752 TGTTGTCGCCCATGTCATCG 61.019 55.000 0.00 0.00 0.00 3.84
151 152 0.447801 GTGTTGTCGCCCATGTCATC 59.552 55.000 0.00 0.00 0.00 2.92
152 153 0.960364 GGTGTTGTCGCCCATGTCAT 60.960 55.000 0.00 0.00 38.21 3.06
153 154 1.599518 GGTGTTGTCGCCCATGTCA 60.600 57.895 0.00 0.00 38.21 3.58
154 155 1.169661 TTGGTGTTGTCGCCCATGTC 61.170 55.000 0.00 0.00 43.03 3.06
155 156 1.152860 TTGGTGTTGTCGCCCATGT 60.153 52.632 0.00 0.00 43.03 3.21
156 157 1.285641 GTTGGTGTTGTCGCCCATG 59.714 57.895 0.00 0.00 43.03 3.66
157 158 2.258013 CGTTGGTGTTGTCGCCCAT 61.258 57.895 0.00 0.00 43.03 4.00
158 159 2.897846 CGTTGGTGTTGTCGCCCA 60.898 61.111 0.00 0.00 43.03 5.36
159 160 4.322385 GCGTTGGTGTTGTCGCCC 62.322 66.667 0.00 0.00 43.03 6.13
161 162 4.659874 CGGCGTTGGTGTTGTCGC 62.660 66.667 0.00 0.00 46.42 5.19
162 163 4.007940 CCGGCGTTGGTGTTGTCG 62.008 66.667 6.01 0.00 0.00 4.35
163 164 4.322385 GCCGGCGTTGGTGTTGTC 62.322 66.667 12.58 0.00 0.00 3.18
185 186 2.852495 ATACGGTGCAGCGGGAACAG 62.852 60.000 37.73 12.80 0.00 3.16
186 187 2.949909 ATACGGTGCAGCGGGAACA 61.950 57.895 37.73 19.51 0.00 3.18
187 188 2.125269 ATACGGTGCAGCGGGAAC 60.125 61.111 37.73 0.89 0.00 3.62
188 189 2.125310 CATACGGTGCAGCGGGAA 60.125 61.111 37.73 24.49 0.00 3.97
189 190 3.387091 ACATACGGTGCAGCGGGA 61.387 61.111 37.73 26.82 0.00 5.14
190 191 3.195002 CACATACGGTGCAGCGGG 61.195 66.667 37.73 28.25 41.36 6.13
198 199 6.098409 ACAAGAAGGATAGAATCACATACGGT 59.902 38.462 0.00 0.00 0.00 4.83
199 200 6.516718 ACAAGAAGGATAGAATCACATACGG 58.483 40.000 0.00 0.00 0.00 4.02
200 201 7.096436 CGAACAAGAAGGATAGAATCACATACG 60.096 40.741 0.00 0.00 0.00 3.06
201 202 7.921214 TCGAACAAGAAGGATAGAATCACATAC 59.079 37.037 0.00 0.00 0.00 2.39
202 203 8.007405 TCGAACAAGAAGGATAGAATCACATA 57.993 34.615 0.00 0.00 0.00 2.29
203 204 6.878317 TCGAACAAGAAGGATAGAATCACAT 58.122 36.000 0.00 0.00 0.00 3.21
204 205 6.152831 TCTCGAACAAGAAGGATAGAATCACA 59.847 38.462 0.00 0.00 0.00 3.58
205 206 6.565234 TCTCGAACAAGAAGGATAGAATCAC 58.435 40.000 0.00 0.00 0.00 3.06
206 207 6.775594 TCTCGAACAAGAAGGATAGAATCA 57.224 37.500 0.00 0.00 0.00 2.57
207 208 8.573035 ACTATCTCGAACAAGAAGGATAGAATC 58.427 37.037 16.49 0.00 37.28 2.52
208 209 8.356657 CACTATCTCGAACAAGAAGGATAGAAT 58.643 37.037 16.49 0.00 37.28 2.40
209 210 7.201830 CCACTATCTCGAACAAGAAGGATAGAA 60.202 40.741 16.49 0.00 37.28 2.10
210 211 6.263392 CCACTATCTCGAACAAGAAGGATAGA 59.737 42.308 16.49 0.00 37.28 1.98
211 212 6.039941 ACCACTATCTCGAACAAGAAGGATAG 59.960 42.308 10.74 10.74 38.77 2.08
212 213 5.892119 ACCACTATCTCGAACAAGAAGGATA 59.108 40.000 0.00 0.00 0.00 2.59
213 214 4.712337 ACCACTATCTCGAACAAGAAGGAT 59.288 41.667 0.00 0.00 0.00 3.24
214 215 4.087182 ACCACTATCTCGAACAAGAAGGA 58.913 43.478 0.00 0.00 0.00 3.36
215 216 4.457834 ACCACTATCTCGAACAAGAAGG 57.542 45.455 0.00 0.00 0.00 3.46
216 217 6.438259 TCTACCACTATCTCGAACAAGAAG 57.562 41.667 0.00 0.00 0.00 2.85
217 218 6.829229 TTCTACCACTATCTCGAACAAGAA 57.171 37.500 0.00 0.00 0.00 2.52
218 219 7.122204 TGAATTCTACCACTATCTCGAACAAGA 59.878 37.037 7.05 0.00 0.00 3.02
219 220 7.258441 TGAATTCTACCACTATCTCGAACAAG 58.742 38.462 7.05 0.00 0.00 3.16
220 221 7.165460 TGAATTCTACCACTATCTCGAACAA 57.835 36.000 7.05 0.00 0.00 2.83
221 222 6.769134 TGAATTCTACCACTATCTCGAACA 57.231 37.500 7.05 0.00 0.00 3.18
222 223 7.203910 ACATGAATTCTACCACTATCTCGAAC 58.796 38.462 7.05 0.00 0.00 3.95
223 224 7.348080 ACATGAATTCTACCACTATCTCGAA 57.652 36.000 7.05 0.00 0.00 3.71
224 225 6.961360 ACATGAATTCTACCACTATCTCGA 57.039 37.500 7.05 0.00 0.00 4.04
225 226 7.923344 AGAAACATGAATTCTACCACTATCTCG 59.077 37.037 14.15 0.00 35.43 4.04
231 232 9.823647 CATACTAGAAACATGAATTCTACCACT 57.176 33.333 16.49 2.60 38.13 4.00
232 233 9.601217 ACATACTAGAAACATGAATTCTACCAC 57.399 33.333 16.49 0.00 38.13 4.16
233 234 9.599866 CACATACTAGAAACATGAATTCTACCA 57.400 33.333 16.49 10.50 38.13 3.25
234 235 9.601217 ACACATACTAGAAACATGAATTCTACC 57.399 33.333 16.49 0.00 38.13 3.18
236 237 9.817809 GGACACATACTAGAAACATGAATTCTA 57.182 33.333 18.23 18.23 38.13 2.10
237 238 8.543774 AGGACACATACTAGAAACATGAATTCT 58.456 33.333 18.00 18.00 40.18 2.40
238 239 8.723942 AGGACACATACTAGAAACATGAATTC 57.276 34.615 0.00 3.71 0.00 2.17
239 240 9.823647 CTAGGACACATACTAGAAACATGAATT 57.176 33.333 0.00 0.00 41.50 2.17
240 241 9.201989 TCTAGGACACATACTAGAAACATGAAT 57.798 33.333 0.00 0.00 44.23 2.57
241 242 8.589701 TCTAGGACACATACTAGAAACATGAA 57.410 34.615 0.00 0.00 44.23 2.57
250 251 9.237187 ACATATCACATCTAGGACACATACTAG 57.763 37.037 0.00 0.00 40.43 2.57
251 252 9.588096 AACATATCACATCTAGGACACATACTA 57.412 33.333 0.00 0.00 0.00 1.82
252 253 8.484214 AACATATCACATCTAGGACACATACT 57.516 34.615 0.00 0.00 0.00 2.12
253 254 8.360390 TGAACATATCACATCTAGGACACATAC 58.640 37.037 0.00 0.00 31.50 2.39
254 255 8.477419 TGAACATATCACATCTAGGACACATA 57.523 34.615 0.00 0.00 31.50 2.29
255 256 7.365497 TGAACATATCACATCTAGGACACAT 57.635 36.000 0.00 0.00 31.50 3.21
256 257 6.790232 TGAACATATCACATCTAGGACACA 57.210 37.500 0.00 0.00 31.50 3.72
257 258 7.665690 AGATGAACATATCACATCTAGGACAC 58.334 38.462 0.00 0.00 45.55 3.67
258 259 7.846101 AGATGAACATATCACATCTAGGACA 57.154 36.000 0.00 0.00 45.55 4.02
259 260 9.019656 AGTAGATGAACATATCACATCTAGGAC 57.980 37.037 16.57 11.43 46.84 3.85
287 288 7.710907 AGATTAAACTAATCATGCGAACTAGCA 59.289 33.333 8.66 0.00 45.41 3.49
288 289 8.077836 AGATTAAACTAATCATGCGAACTAGC 57.922 34.615 8.66 0.00 45.41 3.42
289 290 9.469807 AGAGATTAAACTAATCATGCGAACTAG 57.530 33.333 8.66 0.00 45.41 2.57
290 291 9.249457 CAGAGATTAAACTAATCATGCGAACTA 57.751 33.333 8.66 0.00 45.41 2.24
291 292 7.254590 GCAGAGATTAAACTAATCATGCGAACT 60.255 37.037 15.10 0.00 45.41 3.01
292 293 6.848296 GCAGAGATTAAACTAATCATGCGAAC 59.152 38.462 15.10 0.00 45.41 3.95
293 294 6.948353 GCAGAGATTAAACTAATCATGCGAA 58.052 36.000 15.10 0.00 45.41 4.70
294 295 6.530913 GCAGAGATTAAACTAATCATGCGA 57.469 37.500 15.10 0.00 45.41 5.10
302 303 9.719355 TGACAACAATAGCAGAGATTAAACTAA 57.281 29.630 0.00 0.00 0.00 2.24
303 304 9.890629 ATGACAACAATAGCAGAGATTAAACTA 57.109 29.630 0.00 0.00 0.00 2.24
304 305 8.671921 CATGACAACAATAGCAGAGATTAAACT 58.328 33.333 0.00 0.00 0.00 2.66
305 306 8.668353 TCATGACAACAATAGCAGAGATTAAAC 58.332 33.333 0.00 0.00 0.00 2.01
306 307 8.791327 TCATGACAACAATAGCAGAGATTAAA 57.209 30.769 0.00 0.00 0.00 1.52
307 308 8.969260 ATCATGACAACAATAGCAGAGATTAA 57.031 30.769 0.00 0.00 0.00 1.40
308 309 8.969260 AATCATGACAACAATAGCAGAGATTA 57.031 30.769 0.00 0.00 0.00 1.75
309 310 7.876936 AATCATGACAACAATAGCAGAGATT 57.123 32.000 0.00 0.00 0.00 2.40
310 311 7.876936 AAATCATGACAACAATAGCAGAGAT 57.123 32.000 0.00 0.00 0.00 2.75
311 312 8.833493 CATAAATCATGACAACAATAGCAGAGA 58.167 33.333 0.00 0.00 36.69 3.10
312 313 8.618677 ACATAAATCATGACAACAATAGCAGAG 58.381 33.333 0.00 0.00 38.10 3.35
313 314 8.510243 ACATAAATCATGACAACAATAGCAGA 57.490 30.769 0.00 0.00 38.10 4.26
314 315 9.229784 GAACATAAATCATGACAACAATAGCAG 57.770 33.333 0.00 0.00 38.10 4.24
315 316 8.959548 AGAACATAAATCATGACAACAATAGCA 58.040 29.630 0.00 0.00 38.10 3.49
316 317 9.229784 CAGAACATAAATCATGACAACAATAGC 57.770 33.333 0.00 0.00 38.10 2.97
319 320 9.985730 AAACAGAACATAAATCATGACAACAAT 57.014 25.926 0.00 0.00 38.10 2.71
356 357 9.860898 GGAAAATGAGCAAATTACTACAAGATT 57.139 29.630 0.00 0.00 0.00 2.40
357 358 9.023962 TGGAAAATGAGCAAATTACTACAAGAT 57.976 29.630 0.00 0.00 0.00 2.40
358 359 8.402798 TGGAAAATGAGCAAATTACTACAAGA 57.597 30.769 0.00 0.00 0.00 3.02
359 360 8.915654 GTTGGAAAATGAGCAAATTACTACAAG 58.084 33.333 0.00 0.00 0.00 3.16
360 361 8.417106 TGTTGGAAAATGAGCAAATTACTACAA 58.583 29.630 0.00 0.00 0.00 2.41
361 362 7.865385 GTGTTGGAAAATGAGCAAATTACTACA 59.135 33.333 0.00 0.00 0.00 2.74
362 363 7.328493 GGTGTTGGAAAATGAGCAAATTACTAC 59.672 37.037 0.00 0.00 0.00 2.73
363 364 7.232534 AGGTGTTGGAAAATGAGCAAATTACTA 59.767 33.333 0.00 0.00 0.00 1.82
364 365 6.041979 AGGTGTTGGAAAATGAGCAAATTACT 59.958 34.615 0.00 0.00 0.00 2.24
365 366 6.223120 AGGTGTTGGAAAATGAGCAAATTAC 58.777 36.000 0.00 0.00 0.00 1.89
366 367 6.418057 AGGTGTTGGAAAATGAGCAAATTA 57.582 33.333 0.00 0.00 0.00 1.40
367 368 5.294734 AGGTGTTGGAAAATGAGCAAATT 57.705 34.783 0.00 0.00 0.00 1.82
368 369 4.961438 AGGTGTTGGAAAATGAGCAAAT 57.039 36.364 0.00 0.00 0.00 2.32
369 370 4.892934 AGTAGGTGTTGGAAAATGAGCAAA 59.107 37.500 0.00 0.00 0.00 3.68
370 371 4.469657 AGTAGGTGTTGGAAAATGAGCAA 58.530 39.130 0.00 0.00 0.00 3.91
371 372 4.098914 AGTAGGTGTTGGAAAATGAGCA 57.901 40.909 0.00 0.00 0.00 4.26
372 373 5.001232 TGTAGTAGGTGTTGGAAAATGAGC 58.999 41.667 0.00 0.00 0.00 4.26
373 374 5.995282 TGTGTAGTAGGTGTTGGAAAATGAG 59.005 40.000 0.00 0.00 0.00 2.90
374 375 5.931294 TGTGTAGTAGGTGTTGGAAAATGA 58.069 37.500 0.00 0.00 0.00 2.57
375 376 6.817765 ATGTGTAGTAGGTGTTGGAAAATG 57.182 37.500 0.00 0.00 0.00 2.32
376 377 7.606456 CACTATGTGTAGTAGGTGTTGGAAAAT 59.394 37.037 0.00 0.00 39.12 1.82
377 378 6.932400 CACTATGTGTAGTAGGTGTTGGAAAA 59.068 38.462 0.00 0.00 39.12 2.29
378 379 6.460781 CACTATGTGTAGTAGGTGTTGGAAA 58.539 40.000 0.00 0.00 39.12 3.13
379 380 5.046878 CCACTATGTGTAGTAGGTGTTGGAA 60.047 44.000 0.00 0.00 39.12 3.53
380 381 4.464951 CCACTATGTGTAGTAGGTGTTGGA 59.535 45.833 0.00 0.00 39.12 3.53
381 382 4.222145 ACCACTATGTGTAGTAGGTGTTGG 59.778 45.833 8.11 0.00 39.12 3.77
382 383 5.168569 CACCACTATGTGTAGTAGGTGTTG 58.831 45.833 18.57 0.00 44.43 3.33
383 384 5.401531 CACCACTATGTGTAGTAGGTGTT 57.598 43.478 18.57 0.00 44.43 3.32
386 387 3.437213 TGCACCACTATGTGTAGTAGGT 58.563 45.455 0.00 0.00 39.12 3.08
396 397 4.864247 GGCAAACTTTTATGCACCACTATG 59.136 41.667 0.00 0.00 44.32 2.23
403 404 2.353704 GGAGGGGCAAACTTTTATGCAC 60.354 50.000 0.00 0.00 45.24 4.57
404 405 1.899142 GGAGGGGCAAACTTTTATGCA 59.101 47.619 0.00 0.00 44.32 3.96
405 406 1.207089 GGGAGGGGCAAACTTTTATGC 59.793 52.381 0.00 0.00 41.82 3.14
406 407 1.831106 GGGGAGGGGCAAACTTTTATG 59.169 52.381 0.00 0.00 0.00 1.90
419 420 1.304891 TGTAAATTGGAGGGGGAGGG 58.695 55.000 0.00 0.00 0.00 4.30
420 421 2.949447 CATGTAAATTGGAGGGGGAGG 58.051 52.381 0.00 0.00 0.00 4.30
422 423 1.063266 GGCATGTAAATTGGAGGGGGA 60.063 52.381 0.00 0.00 0.00 4.81
431 434 1.340991 ACTGAGGGCGGCATGTAAATT 60.341 47.619 12.47 0.00 0.00 1.82
481 484 6.491403 AGTGAGAAAAACTATTGATTGTGCCT 59.509 34.615 0.00 0.00 0.00 4.75
540 543 3.925379 AGACTGTATGCGAAACACATCA 58.075 40.909 0.00 0.00 0.00 3.07
572 579 8.887264 AACCATTGGTGTCCAGTTTTATAATA 57.113 30.769 9.62 0.00 35.34 0.98
729 739 5.291614 CAGTGACTTTTTGGTTGATTGGTTG 59.708 40.000 0.00 0.00 0.00 3.77
732 742 3.803778 GCAGTGACTTTTTGGTTGATTGG 59.196 43.478 0.00 0.00 0.00 3.16
740 750 0.675633 CCTGGGCAGTGACTTTTTGG 59.324 55.000 0.00 0.00 0.00 3.28
753 763 2.825532 ACAATGTATTTGTGTCCTGGGC 59.174 45.455 0.00 0.00 46.80 5.36
804 814 4.148128 TGCCCTTTTCATCTTGCAAAAA 57.852 36.364 0.00 0.00 0.00 1.94
805 815 3.834489 TGCCCTTTTCATCTTGCAAAA 57.166 38.095 0.00 0.00 0.00 2.44
806 816 4.202336 TGAATGCCCTTTTCATCTTGCAAA 60.202 37.500 0.00 0.00 31.81 3.68
807 817 3.324268 TGAATGCCCTTTTCATCTTGCAA 59.676 39.130 0.00 0.00 31.81 4.08
808 818 2.898612 TGAATGCCCTTTTCATCTTGCA 59.101 40.909 0.00 0.00 0.00 4.08
809 819 3.056322 ACTGAATGCCCTTTTCATCTTGC 60.056 43.478 0.00 0.00 32.94 4.01
810 820 4.796038 ACTGAATGCCCTTTTCATCTTG 57.204 40.909 0.00 0.00 32.94 3.02
811 821 6.248433 TCTAACTGAATGCCCTTTTCATCTT 58.752 36.000 0.00 0.00 32.94 2.40
812 822 5.819991 TCTAACTGAATGCCCTTTTCATCT 58.180 37.500 0.00 0.00 32.94 2.90
813 823 5.649831 ACTCTAACTGAATGCCCTTTTCATC 59.350 40.000 0.00 0.00 32.94 2.92
814 824 5.574188 ACTCTAACTGAATGCCCTTTTCAT 58.426 37.500 0.00 0.00 32.94 2.57
815 825 4.985538 ACTCTAACTGAATGCCCTTTTCA 58.014 39.130 0.00 0.00 0.00 2.69
816 826 6.823689 TGATACTCTAACTGAATGCCCTTTTC 59.176 38.462 0.00 0.00 0.00 2.29
817 827 6.599638 GTGATACTCTAACTGAATGCCCTTTT 59.400 38.462 0.00 0.00 0.00 2.27
885 895 0.537143 TTCTGCCGGATTTGTGTGCT 60.537 50.000 5.05 0.00 0.00 4.40
929 939 9.346725 GAAGTTGAGAAAGCAATAACTTTATGG 57.653 33.333 0.00 0.00 40.50 2.74
1002 1017 0.827507 ACGCATATTGATTGGGCCCC 60.828 55.000 22.27 3.99 0.00 5.80
1086 1101 0.664761 TGTGTGAGCTTTGCTTCTGC 59.335 50.000 0.00 0.00 39.88 4.26
1314 1330 0.904865 AGACCAGATCCTCGTTGGCA 60.905 55.000 0.00 0.00 35.35 4.92
1665 1687 1.831389 GCGCGTTCTTGAGCTTGTCA 61.831 55.000 8.43 0.00 0.00 3.58
1686 1708 3.376078 TACGCCTCGGCCGTCTTT 61.376 61.111 27.15 9.59 37.98 2.52
1827 1862 2.127869 CCGCTCGAATCCTCCCTGA 61.128 63.158 0.00 0.00 0.00 3.86
2402 2437 1.813092 GCGATGATTGATGCCTCCTGT 60.813 52.381 0.00 0.00 0.00 4.00
2415 2450 4.278170 TGTTGTTTTCTTCTTGGCGATGAT 59.722 37.500 0.00 0.00 0.00 2.45
2416 2451 3.629855 TGTTGTTTTCTTCTTGGCGATGA 59.370 39.130 0.00 0.00 0.00 2.92
2417 2452 3.963665 TGTTGTTTTCTTCTTGGCGATG 58.036 40.909 0.00 0.00 0.00 3.84
2418 2453 4.647424 TTGTTGTTTTCTTCTTGGCGAT 57.353 36.364 0.00 0.00 0.00 4.58
2445 2480 4.404073 CAGGACAAGCTACAATCCTCTAGT 59.596 45.833 5.28 0.00 39.66 2.57
2462 2497 0.244721 CGCACAGATCTGACAGGACA 59.755 55.000 29.27 0.00 0.00 4.02
2463 2498 1.080995 GCGCACAGATCTGACAGGAC 61.081 60.000 29.27 9.24 0.00 3.85
2464 2499 1.216444 GCGCACAGATCTGACAGGA 59.784 57.895 29.27 0.00 0.00 3.86
2465 2500 0.805322 GAGCGCACAGATCTGACAGG 60.805 60.000 29.27 15.22 31.39 4.00
2466 2501 0.173029 AGAGCGCACAGATCTGACAG 59.827 55.000 29.27 18.23 45.06 3.51
2579 2614 7.755373 GCGACTCATTGCTAATATCATACTGTA 59.245 37.037 0.00 0.00 31.75 2.74
2580 2615 6.587990 GCGACTCATTGCTAATATCATACTGT 59.412 38.462 0.00 0.00 31.75 3.55
2581 2616 6.810676 AGCGACTCATTGCTAATATCATACTG 59.189 38.462 0.00 0.00 44.39 2.74
2582 2617 6.810676 CAGCGACTCATTGCTAATATCATACT 59.189 38.462 0.00 0.00 44.42 2.12
2583 2618 6.587990 ACAGCGACTCATTGCTAATATCATAC 59.412 38.462 0.00 0.00 44.42 2.39
2679 2714 2.215625 AGCCTCTGTGAGCAGCAGT 61.216 57.895 0.00 0.00 42.29 4.40
2684 2719 1.877576 CGTACCAGCCTCTGTGAGCA 61.878 60.000 0.00 0.00 0.00 4.26
2724 2759 1.221466 TGTGTTCTTCAGCCGCGAAG 61.221 55.000 8.23 14.83 43.17 3.79
2812 2847 8.420945 CGCGAGATAGTAGTATGAAAATTGAAG 58.579 37.037 0.00 0.00 0.00 3.02
2982 3021 1.814169 GAGAAACGGATGGGGACGC 60.814 63.158 0.00 0.00 0.00 5.19
3025 3064 2.409975 GACCTCATTTCCGTTCGTTCA 58.590 47.619 0.00 0.00 0.00 3.18
3037 3076 0.828022 TAATCGGTGGCGACCTCATT 59.172 50.000 16.47 14.96 40.58 2.57
3131 3193 2.103143 CTAGCGGCGTCAGGACTG 59.897 66.667 9.37 0.00 0.00 3.51
3132 3194 3.141488 CCTAGCGGCGTCAGGACT 61.141 66.667 19.98 5.48 0.00 3.85
3133 3195 3.003113 AACCTAGCGGCGTCAGGAC 62.003 63.158 27.91 4.02 33.44 3.85
3134 3196 2.678934 AACCTAGCGGCGTCAGGA 60.679 61.111 27.91 2.66 33.44 3.86
3135 3197 2.509336 CAACCTAGCGGCGTCAGG 60.509 66.667 22.07 22.07 35.45 3.86
3136 3198 3.188786 GCAACCTAGCGGCGTCAG 61.189 66.667 9.37 5.80 0.00 3.51
3137 3199 3.691342 AGCAACCTAGCGGCGTCA 61.691 61.111 9.37 0.00 40.15 4.35
3138 3200 3.188786 CAGCAACCTAGCGGCGTC 61.189 66.667 9.37 0.13 40.15 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.