Multiple sequence alignment - TraesCS4D01G080100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G080100 chr4D 100.000 2792 0 0 1 2792 54128674 54125883 0.000000e+00 5156.0
1 TraesCS4D01G080100 chr4D 85.124 121 18 0 1194 1314 356562384 356562504 1.050000e-24 124.0
2 TraesCS4D01G080100 chr4D 82.857 105 16 2 1217 1320 455893080 455893183 2.960000e-15 93.5
3 TraesCS4D01G080100 chr4A 93.919 1628 57 12 464 2080 542827530 542829126 0.000000e+00 2420.0
4 TraesCS4D01G080100 chr4A 88.288 555 46 7 2240 2792 542829124 542829661 0.000000e+00 647.0
5 TraesCS4D01G080100 chr4A 80.000 290 43 8 2394 2671 181805775 181805489 1.700000e-47 200.0
6 TraesCS4D01G080100 chr4A 91.892 111 7 2 337 446 542788053 542788162 1.340000e-33 154.0
7 TraesCS4D01G080100 chr4B 94.639 1511 48 13 573 2080 79738389 79736909 0.000000e+00 2311.0
8 TraesCS4D01G080100 chr4B 86.301 219 22 4 364 578 79738634 79738420 6.010000e-57 231.0
9 TraesCS4D01G080100 chr4B 95.683 139 5 1 2241 2378 79736910 79736772 3.620000e-54 222.0
10 TraesCS4D01G080100 chr1D 86.262 313 24 5 1 313 196612166 196612459 3.470000e-84 322.0
11 TraesCS4D01G080100 chr1D 92.079 202 16 0 1 202 29851536 29851335 4.550000e-73 285.0
12 TraesCS4D01G080100 chr1D 93.939 165 9 1 2079 2242 422051585 422051421 5.970000e-62 248.0
13 TraesCS4D01G080100 chr1D 84.615 195 15 2 133 327 135389811 135389632 2.210000e-41 180.0
14 TraesCS4D01G080100 chr1D 87.069 116 15 0 1218 1333 17169027 17168912 6.270000e-27 132.0
15 TraesCS4D01G080100 chr1D 83.333 144 20 4 1192 1333 241267533 241267674 2.260000e-26 130.0
16 TraesCS4D01G080100 chr1D 82.979 141 18 6 1196 1333 370342135 370342272 3.780000e-24 122.0
17 TraesCS4D01G080100 chr7D 85.862 290 25 3 1 290 178716539 178716812 7.560000e-76 294.0
18 TraesCS4D01G080100 chr7D 85.813 289 23 5 3 290 165698607 165698336 9.780000e-75 291.0
19 TraesCS4D01G080100 chr7D 85.223 291 27 3 1 291 138544149 138544423 4.550000e-73 285.0
20 TraesCS4D01G080100 chr7D 92.398 171 12 1 2079 2248 237158773 237158603 2.780000e-60 243.0
21 TraesCS4D01G080100 chr7D 84.043 188 15 2 133 320 239732515 239732687 1.720000e-37 167.0
22 TraesCS4D01G080100 chr7D 84.932 146 20 2 1189 1333 174992607 174992751 2.240000e-31 147.0
23 TraesCS4D01G080100 chr5D 85.764 288 25 3 3 290 211650299 211650028 9.780000e-75 291.0
24 TraesCS4D01G080100 chr5D 92.500 200 15 0 3 202 244980881 244980682 1.270000e-73 287.0
25 TraesCS4D01G080100 chr5D 93.976 166 9 1 2079 2243 48668966 48669131 1.660000e-62 250.0
26 TraesCS4D01G080100 chr5D 92.982 171 11 1 2079 2248 340690755 340690585 5.970000e-62 248.0
27 TraesCS4D01G080100 chr5D 87.050 139 16 2 1196 1333 365992582 365992719 3.720000e-34 156.0
28 TraesCS4D01G080100 chr5D 83.942 137 22 0 1196 1332 251064170 251064034 6.270000e-27 132.0
29 TraesCS4D01G080100 chr6A 92.079 202 16 0 1 202 55294686 55294485 4.550000e-73 285.0
30 TraesCS4D01G080100 chr6A 83.246 191 15 3 133 322 578849515 578849689 2.880000e-35 159.0
31 TraesCS4D01G080100 chr6A 84.177 158 20 5 1194 1349 520355712 520355558 6.230000e-32 148.0
32 TraesCS4D01G080100 chr6A 81.250 176 24 8 1194 1364 500083778 500083607 1.740000e-27 134.0
33 TraesCS4D01G080100 chr1A 92.079 202 16 0 1 202 311140960 311141161 4.550000e-73 285.0
34 TraesCS4D01G080100 chr1A 79.392 296 53 8 2380 2671 428669212 428668921 4.720000e-48 202.0
35 TraesCS4D01G080100 chr1A 82.979 141 18 6 1196 1333 469309816 469309953 3.780000e-24 122.0
36 TraesCS4D01G080100 chr1A 81.944 144 22 4 1192 1333 306150299 306150440 4.890000e-23 119.0
37 TraesCS4D01G080100 chr3D 93.976 166 9 1 2078 2242 435452249 435452414 1.660000e-62 250.0
38 TraesCS4D01G080100 chr3D 92.398 171 12 1 2079 2248 258242505 258242675 2.780000e-60 243.0
39 TraesCS4D01G080100 chr3D 80.142 282 47 7 2380 2657 55275919 55275643 4.720000e-48 202.0
40 TraesCS4D01G080100 chr3D 86.184 152 19 2 1196 1346 61703549 61703399 2.230000e-36 163.0
41 TraesCS4D01G080100 chr5B 93.452 168 10 1 2079 2245 457962009 457961842 5.970000e-62 248.0
42 TraesCS4D01G080100 chr5B 82.759 232 36 4 2441 2670 429098256 429098485 1.310000e-48 204.0
43 TraesCS4D01G080100 chr5B 86.331 139 17 2 1196 1333 432323434 432323571 1.730000e-32 150.0
44 TraesCS4D01G080100 chr6D 93.333 165 10 1 2079 2242 305359627 305359791 2.780000e-60 243.0
45 TraesCS4D01G080100 chr6D 90.323 124 12 0 202 325 364234345 364234468 2.230000e-36 163.0
46 TraesCS4D01G080100 chr6D 84.177 158 20 5 1194 1349 378379442 378379288 6.230000e-32 148.0
47 TraesCS4D01G080100 chr6D 81.250 176 24 8 1194 1364 358326159 358325988 1.740000e-27 134.0
48 TraesCS4D01G080100 chr6D 83.333 120 12 7 1218 1333 334227607 334227492 1.370000e-18 104.0
49 TraesCS4D01G080100 chr5A 91.011 178 14 2 2069 2244 635952562 635952739 3.590000e-59 239.0
50 TraesCS4D01G080100 chr5A 80.150 267 43 7 2411 2669 687345030 687345294 1.020000e-44 191.0
51 TraesCS4D01G080100 chr5A 84.375 192 15 2 133 324 2917079 2916903 1.030000e-39 174.0
52 TraesCS4D01G080100 chr5A 85.612 139 18 2 1196 1333 467585842 467585979 8.060000e-31 145.0
53 TraesCS4D01G080100 chr5A 82.209 163 29 0 1196 1358 334265041 334264879 1.040000e-29 141.0
54 TraesCS4D01G080100 chr2B 80.000 305 47 7 2379 2671 16887435 16887737 2.180000e-51 213.0
55 TraesCS4D01G080100 chr2B 80.000 305 48 10 2378 2671 484125414 484125112 2.180000e-51 213.0
56 TraesCS4D01G080100 chr2B 79.221 308 48 13 2380 2675 756335434 756335737 1.700000e-47 200.0
57 TraesCS4D01G080100 chr2B 78.896 308 49 13 2380 2675 756321086 756321389 7.890000e-46 195.0
58 TraesCS4D01G080100 chr2B 84.456 193 15 2 133 325 777547770 777547947 2.860000e-40 176.0
59 TraesCS4D01G080100 chr2B 87.943 141 14 3 1194 1332 777618672 777618533 2.230000e-36 163.0
60 TraesCS4D01G080100 chr2B 87.234 141 16 2 1194 1333 777549261 777549122 2.880000e-35 159.0
61 TraesCS4D01G080100 chr2B 85.430 151 18 4 1194 1342 777521709 777521561 1.340000e-33 154.0
62 TraesCS4D01G080100 chr1B 79.599 299 48 7 2384 2671 161403586 161403290 4.720000e-48 202.0
63 TraesCS4D01G080100 chr1B 84.896 192 14 2 133 324 23224229 23224053 2.210000e-41 180.0
64 TraesCS4D01G080100 chr1B 85.714 140 20 0 1194 1333 24933029 24932890 6.230000e-32 148.0
65 TraesCS4D01G080100 chr3B 78.289 304 50 10 2380 2669 247548016 247547715 6.140000e-42 182.0
66 TraesCS4D01G080100 chr3B 93.277 119 8 0 202 320 809869071 809868953 2.860000e-40 176.0
67 TraesCS4D01G080100 chr3B 86.755 151 20 0 1196 1346 99171521 99171371 4.780000e-38 169.0
68 TraesCS4D01G080100 chr2A 85.106 188 13 1 133 320 768354358 768354530 7.950000e-41 178.0
69 TraesCS4D01G080100 chr2A 87.943 141 15 2 1194 1333 778827534 778827673 6.190000e-37 165.0
70 TraesCS4D01G080100 chr2D 89.362 141 13 2 1194 1333 634556345 634556206 2.860000e-40 176.0
71 TraesCS4D01G080100 chr2D 87.234 141 15 3 1194 1332 634575258 634575119 1.040000e-34 158.0
72 TraesCS4D01G080100 chr2D 87.324 142 13 5 1194 1332 634658586 634658447 1.040000e-34 158.0
73 TraesCS4D01G080100 chr3A 86.755 151 20 0 1196 1346 70730649 70730499 4.780000e-38 169.0
74 TraesCS4D01G080100 chr7B 89.855 69 7 0 2380 2448 148129052 148129120 3.830000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G080100 chr4D 54125883 54128674 2791 True 5156.000000 5156 100.000000 1 2792 1 chr4D.!!$R1 2791
1 TraesCS4D01G080100 chr4A 542827530 542829661 2131 False 1533.500000 2420 91.103500 464 2792 2 chr4A.!!$F2 2328
2 TraesCS4D01G080100 chr4B 79736772 79738634 1862 True 921.333333 2311 92.207667 364 2378 3 chr4B.!!$R1 2014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 844 1.078708 AACGCCTATCCAACACCCG 60.079 57.895 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2525 0.033504 ATGACGTGTCGGCTCAGTTT 59.966 50.0 0.0 0.0 35.04 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.869667 ACTATGTTACTACATGACTATCTTCCT 57.130 33.333 0.00 0.00 44.56 3.36
53 54 8.589701 TGTTACTACATGACTATCTTCCTTCA 57.410 34.615 0.00 0.00 0.00 3.02
54 55 9.201989 TGTTACTACATGACTATCTTCCTTCAT 57.798 33.333 0.00 0.00 0.00 2.57
61 62 8.844244 ACATGACTATCTTCCTTCATTTATTGC 58.156 33.333 0.00 0.00 0.00 3.56
62 63 9.064706 CATGACTATCTTCCTTCATTTATTGCT 57.935 33.333 0.00 0.00 0.00 3.91
63 64 9.638176 ATGACTATCTTCCTTCATTTATTGCTT 57.362 29.630 0.00 0.00 0.00 3.91
64 65 8.896744 TGACTATCTTCCTTCATTTATTGCTTG 58.103 33.333 0.00 0.00 0.00 4.01
65 66 7.710896 ACTATCTTCCTTCATTTATTGCTTGC 58.289 34.615 0.00 0.00 0.00 4.01
66 67 5.329035 TCTTCCTTCATTTATTGCTTGCC 57.671 39.130 0.00 0.00 0.00 4.52
67 68 4.771577 TCTTCCTTCATTTATTGCTTGCCA 59.228 37.500 0.00 0.00 0.00 4.92
68 69 4.454728 TCCTTCATTTATTGCTTGCCAC 57.545 40.909 0.00 0.00 0.00 5.01
69 70 3.831333 TCCTTCATTTATTGCTTGCCACA 59.169 39.130 0.00 0.00 0.00 4.17
70 71 4.467082 TCCTTCATTTATTGCTTGCCACAT 59.533 37.500 0.00 0.00 0.00 3.21
71 72 4.807304 CCTTCATTTATTGCTTGCCACATC 59.193 41.667 0.00 0.00 0.00 3.06
72 73 5.402997 TTCATTTATTGCTTGCCACATCA 57.597 34.783 0.00 0.00 0.00 3.07
73 74 5.601583 TCATTTATTGCTTGCCACATCAT 57.398 34.783 0.00 0.00 0.00 2.45
74 75 5.593968 TCATTTATTGCTTGCCACATCATC 58.406 37.500 0.00 0.00 0.00 2.92
75 76 5.361571 TCATTTATTGCTTGCCACATCATCT 59.638 36.000 0.00 0.00 0.00 2.90
76 77 6.546772 TCATTTATTGCTTGCCACATCATCTA 59.453 34.615 0.00 0.00 0.00 1.98
77 78 6.964807 TTTATTGCTTGCCACATCATCTAT 57.035 33.333 0.00 0.00 0.00 1.98
78 79 6.964807 TTATTGCTTGCCACATCATCTATT 57.035 33.333 0.00 0.00 0.00 1.73
79 80 5.864418 ATTGCTTGCCACATCATCTATTT 57.136 34.783 0.00 0.00 0.00 1.40
80 81 5.664294 TTGCTTGCCACATCATCTATTTT 57.336 34.783 0.00 0.00 0.00 1.82
81 82 6.772360 TTGCTTGCCACATCATCTATTTTA 57.228 33.333 0.00 0.00 0.00 1.52
82 83 6.964807 TGCTTGCCACATCATCTATTTTAT 57.035 33.333 0.00 0.00 0.00 1.40
83 84 6.973843 TGCTTGCCACATCATCTATTTTATC 58.026 36.000 0.00 0.00 0.00 1.75
84 85 6.774170 TGCTTGCCACATCATCTATTTTATCT 59.226 34.615 0.00 0.00 0.00 1.98
85 86 7.938490 TGCTTGCCACATCATCTATTTTATCTA 59.062 33.333 0.00 0.00 0.00 1.98
86 87 8.449397 GCTTGCCACATCATCTATTTTATCTAG 58.551 37.037 0.00 0.00 0.00 2.43
87 88 9.716531 CTTGCCACATCATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
117 118 8.004087 TGTGATGTTACTACCTATGTTACTCC 57.996 38.462 0.00 0.00 0.00 3.85
118 119 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
119 120 7.069085 GTGATGTTACTACCTATGTTACTCCCA 59.931 40.741 0.00 0.00 0.00 4.37
120 121 7.787904 TGATGTTACTACCTATGTTACTCCCAT 59.212 37.037 0.00 0.00 0.00 4.00
121 122 7.983166 TGTTACTACCTATGTTACTCCCATT 57.017 36.000 0.00 0.00 0.00 3.16
122 123 7.788026 TGTTACTACCTATGTTACTCCCATTG 58.212 38.462 0.00 0.00 0.00 2.82
123 124 7.400915 TGTTACTACCTATGTTACTCCCATTGT 59.599 37.037 0.00 0.00 0.00 2.71
124 125 6.235231 ACTACCTATGTTACTCCCATTGTG 57.765 41.667 0.00 0.00 0.00 3.33
125 126 4.503714 ACCTATGTTACTCCCATTGTGG 57.496 45.455 0.00 0.00 37.25 4.17
139 140 5.934402 CCATTGTGGGTAGTCTTACTAGT 57.066 43.478 0.00 0.00 32.67 2.57
141 142 7.040473 CCATTGTGGGTAGTCTTACTAGTAG 57.960 44.000 2.23 0.00 32.67 2.57
142 143 6.606395 CCATTGTGGGTAGTCTTACTAGTAGT 59.394 42.308 8.14 8.14 32.67 2.73
143 144 7.776969 CCATTGTGGGTAGTCTTACTAGTAGTA 59.223 40.741 5.90 5.90 32.67 1.82
144 145 9.182214 CATTGTGGGTAGTCTTACTAGTAGTAA 57.818 37.037 19.32 19.32 38.28 2.24
159 160 8.859236 ACTAGTAGTAAGAGTAACATCACACA 57.141 34.615 0.00 0.00 0.00 3.72
160 161 9.463902 ACTAGTAGTAAGAGTAACATCACACAT 57.536 33.333 0.00 0.00 0.00 3.21
166 167 9.809096 AGTAAGAGTAACATCACACATATCAAG 57.191 33.333 0.00 0.00 0.00 3.02
167 168 9.035607 GTAAGAGTAACATCACACATATCAAGG 57.964 37.037 0.00 0.00 0.00 3.61
168 169 6.051717 AGAGTAACATCACACATATCAAGGC 58.948 40.000 0.00 0.00 0.00 4.35
169 170 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
170 171 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
171 172 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
172 173 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
173 174 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
174 175 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
175 176 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
176 177 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
177 178 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
178 179 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
179 180 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
180 181 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
181 182 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
182 183 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
183 184 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
184 185 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
185 186 4.039730 TCAAGGCAAGATGAGTCTATAGCC 59.960 45.833 0.00 0.00 42.62 3.93
186 187 3.855668 AGGCAAGATGAGTCTATAGCCT 58.144 45.455 11.05 11.05 45.15 4.58
187 188 5.004361 AGGCAAGATGAGTCTATAGCCTA 57.996 43.478 13.74 0.00 46.63 3.93
188 189 5.398236 AGGCAAGATGAGTCTATAGCCTAA 58.602 41.667 13.74 0.00 46.63 2.69
189 190 6.022315 AGGCAAGATGAGTCTATAGCCTAAT 58.978 40.000 13.74 0.00 46.63 1.73
190 191 7.185565 AGGCAAGATGAGTCTATAGCCTAATA 58.814 38.462 13.74 0.00 46.63 0.98
191 192 7.676043 AGGCAAGATGAGTCTATAGCCTAATAA 59.324 37.037 13.74 0.00 46.63 1.40
192 193 8.314751 GGCAAGATGAGTCTATAGCCTAATAAA 58.685 37.037 0.00 0.00 40.78 1.40
193 194 9.883142 GCAAGATGAGTCTATAGCCTAATAAAT 57.117 33.333 0.00 0.00 33.30 1.40
236 237 9.899661 AAGTGTTGTATGTTACCACATATATGT 57.100 29.630 12.75 12.75 45.69 2.29
237 238 9.899661 AGTGTTGTATGTTACCACATATATGTT 57.100 29.630 15.85 5.50 45.69 2.71
243 244 9.649167 GTATGTTACCACATATATGTTACTCCC 57.351 37.037 15.85 3.90 45.69 4.30
244 245 7.069877 TGTTACCACATATATGTTACTCCCC 57.930 40.000 15.85 2.44 39.39 4.81
245 246 6.616137 TGTTACCACATATATGTTACTCCCCA 59.384 38.462 15.85 4.81 39.39 4.96
246 247 5.562298 ACCACATATATGTTACTCCCCAC 57.438 43.478 15.85 0.00 39.39 4.61
247 248 5.224441 ACCACATATATGTTACTCCCCACT 58.776 41.667 15.85 0.00 39.39 4.00
248 249 6.387127 ACCACATATATGTTACTCCCCACTA 58.613 40.000 15.85 0.00 39.39 2.74
249 250 7.023120 ACCACATATATGTTACTCCCCACTAT 58.977 38.462 15.85 0.00 39.39 2.12
250 251 8.181524 ACCACATATATGTTACTCCCCACTATA 58.818 37.037 15.85 0.00 39.39 1.31
251 252 9.042450 CCACATATATGTTACTCCCCACTATAA 57.958 37.037 15.85 0.00 39.39 0.98
255 256 9.854303 ATATATGTTACTCCCCACTATAAAGGT 57.146 33.333 0.00 0.00 0.00 3.50
257 258 9.678981 ATATGTTACTCCCCACTATAAAGGTAA 57.321 33.333 0.00 0.00 0.00 2.85
258 259 8.577164 ATGTTACTCCCCACTATAAAGGTAAT 57.423 34.615 0.00 0.00 0.00 1.89
259 260 9.678981 ATGTTACTCCCCACTATAAAGGTAATA 57.321 33.333 0.00 0.00 0.00 0.98
260 261 9.504705 TGTTACTCCCCACTATAAAGGTAATAA 57.495 33.333 0.00 0.00 0.00 1.40
312 313 9.793259 ACTATTCTATGTTAATACCCATTGTGG 57.207 33.333 0.00 0.00 37.25 4.17
328 329 7.703058 CCATTGTGGGTAGTCTAAGAAAAAT 57.297 36.000 0.00 0.00 32.67 1.82
329 330 8.801882 CCATTGTGGGTAGTCTAAGAAAAATA 57.198 34.615 0.00 0.00 32.67 1.40
330 331 9.238368 CCATTGTGGGTAGTCTAAGAAAAATAA 57.762 33.333 0.00 0.00 32.67 1.40
333 334 8.712285 TGTGGGTAGTCTAAGAAAAATAATCG 57.288 34.615 0.00 0.00 0.00 3.34
334 335 7.279313 TGTGGGTAGTCTAAGAAAAATAATCGC 59.721 37.037 0.00 0.00 0.00 4.58
335 336 6.477688 TGGGTAGTCTAAGAAAAATAATCGCG 59.522 38.462 0.00 0.00 0.00 5.87
336 337 6.073927 GGGTAGTCTAAGAAAAATAATCGCGG 60.074 42.308 6.13 0.00 0.00 6.46
337 338 5.405331 AGTCTAAGAAAAATAATCGCGGC 57.595 39.130 6.13 0.00 0.00 6.53
338 339 4.025979 AGTCTAAGAAAAATAATCGCGGCG 60.026 41.667 17.70 17.70 0.00 6.46
339 340 4.026310 GTCTAAGAAAAATAATCGCGGCGA 60.026 41.667 28.46 28.46 41.13 5.54
340 341 2.732001 AGAAAAATAATCGCGGCGAC 57.268 45.000 28.88 12.20 39.18 5.19
341 342 2.277084 AGAAAAATAATCGCGGCGACT 58.723 42.857 28.88 20.58 39.18 4.18
342 343 2.676342 AGAAAAATAATCGCGGCGACTT 59.324 40.909 28.88 22.52 39.18 3.01
343 344 3.866910 AGAAAAATAATCGCGGCGACTTA 59.133 39.130 28.88 23.75 39.18 2.24
344 345 3.580794 AAAATAATCGCGGCGACTTAC 57.419 42.857 28.88 0.00 39.18 2.34
345 346 2.212869 AATAATCGCGGCGACTTACA 57.787 45.000 28.88 11.17 39.18 2.41
346 347 2.433868 ATAATCGCGGCGACTTACAT 57.566 45.000 28.88 12.96 39.18 2.29
347 348 2.212869 TAATCGCGGCGACTTACATT 57.787 45.000 28.88 18.56 39.18 2.71
348 349 2.212869 AATCGCGGCGACTTACATTA 57.787 45.000 28.88 1.52 39.18 1.90
349 350 2.212869 ATCGCGGCGACTTACATTAA 57.787 45.000 28.88 0.65 39.18 1.40
350 351 1.270971 TCGCGGCGACTTACATTAAC 58.729 50.000 22.69 0.00 0.00 2.01
351 352 1.135315 TCGCGGCGACTTACATTAACT 60.135 47.619 22.69 0.00 0.00 2.24
352 353 1.254570 CGCGGCGACTTACATTAACTC 59.745 52.381 19.16 0.00 0.00 3.01
353 354 2.537401 GCGGCGACTTACATTAACTCT 58.463 47.619 12.98 0.00 0.00 3.24
354 355 2.281762 GCGGCGACTTACATTAACTCTG 59.718 50.000 12.98 0.00 0.00 3.35
355 356 3.508762 CGGCGACTTACATTAACTCTGT 58.491 45.455 0.00 0.00 0.00 3.41
356 357 3.303495 CGGCGACTTACATTAACTCTGTG 59.697 47.826 0.00 0.00 0.00 3.66
357 358 4.243270 GGCGACTTACATTAACTCTGTGT 58.757 43.478 0.00 0.00 0.00 3.72
358 359 5.404946 GGCGACTTACATTAACTCTGTGTA 58.595 41.667 0.00 0.00 0.00 2.90
359 360 5.287992 GGCGACTTACATTAACTCTGTGTAC 59.712 44.000 0.00 0.00 0.00 2.90
360 361 5.860182 GCGACTTACATTAACTCTGTGTACA 59.140 40.000 0.00 0.00 0.00 2.90
361 362 6.033619 GCGACTTACATTAACTCTGTGTACAG 59.966 42.308 5.67 5.67 45.08 2.74
362 363 7.082602 CGACTTACATTAACTCTGTGTACAGT 58.917 38.462 11.44 0.00 44.12 3.55
377 378 8.355169 TCTGTGTACAGTTAGATTTTAACGAGT 58.645 33.333 11.44 4.54 44.12 4.18
383 384 8.739649 ACAGTTAGATTTTAACGAGTGTAGAC 57.260 34.615 0.00 0.00 33.00 2.59
388 389 4.566545 TTTTAACGAGTGTAGACGTGGA 57.433 40.909 0.00 0.00 42.43 4.02
399 400 4.082354 GTGTAGACGTGGAGAGTGGTAAAT 60.082 45.833 0.00 0.00 0.00 1.40
401 402 4.618920 AGACGTGGAGAGTGGTAAATTT 57.381 40.909 0.00 0.00 0.00 1.82
409 410 5.534654 TGGAGAGTGGTAAATTTTTGTCCAG 59.465 40.000 0.00 0.00 0.00 3.86
410 411 5.535030 GGAGAGTGGTAAATTTTTGTCCAGT 59.465 40.000 0.00 4.01 34.40 4.00
460 461 5.624344 AGTTTCGACTTTAGAGTGATCGA 57.376 39.130 0.00 0.00 35.88 3.59
461 462 6.197364 AGTTTCGACTTTAGAGTGATCGAT 57.803 37.500 0.00 0.00 35.88 3.59
462 463 6.622549 AGTTTCGACTTTAGAGTGATCGATT 58.377 36.000 0.00 0.00 35.88 3.34
464 465 5.813080 TCGACTTTAGAGTGATCGATTCA 57.187 39.130 0.00 0.00 35.88 2.57
465 466 6.190954 TCGACTTTAGAGTGATCGATTCAA 57.809 37.500 0.00 0.00 35.88 2.69
466 467 6.796426 TCGACTTTAGAGTGATCGATTCAAT 58.204 36.000 0.00 0.00 35.88 2.57
543 546 1.660607 CATGGTGCTGTGTTACTAGCG 59.339 52.381 7.43 0.00 42.74 4.26
583 622 4.137543 AGCAGTAGTAAGCAAGCAAAACT 58.862 39.130 0.00 0.00 0.00 2.66
612 651 9.301897 GTATAGAATGGGAGAAAAGCCATTTAT 57.698 33.333 0.00 0.00 33.74 1.40
687 727 2.114616 CAGGTAGCTCACAGGATTCCT 58.885 52.381 0.00 0.00 0.00 3.36
718 758 4.722346 GCAAAGATCGAAAGCAACTCTACG 60.722 45.833 0.00 0.00 0.00 3.51
800 840 1.903860 ACCTACAACGCCTATCCAACA 59.096 47.619 0.00 0.00 0.00 3.33
804 844 1.078708 AACGCCTATCCAACACCCG 60.079 57.895 0.00 0.00 0.00 5.28
827 867 1.688735 CTGTCCACACACCTTCTCTCA 59.311 52.381 0.00 0.00 0.00 3.27
841 881 3.500448 TCTCTCACTCACTCACTCACT 57.500 47.619 0.00 0.00 0.00 3.41
846 886 2.620585 TCACTCACTCACTCACTCACTG 59.379 50.000 0.00 0.00 0.00 3.66
847 887 1.959985 ACTCACTCACTCACTCACTGG 59.040 52.381 0.00 0.00 0.00 4.00
852 892 1.617850 CTCACTCACTCACTGGCTCTT 59.382 52.381 0.00 0.00 0.00 2.85
959 999 5.237815 TCCATTGTCATAATACGAGCATCC 58.762 41.667 0.00 0.00 0.00 3.51
1644 1692 4.899239 CCGATGCTCTGGCCGACC 62.899 72.222 0.00 0.00 37.74 4.79
1680 1728 0.665835 GCAATGTGGACACGTGGAAA 59.334 50.000 21.57 0.88 0.00 3.13
1683 1731 3.135225 CAATGTGGACACGTGGAAAGTA 58.865 45.455 21.57 1.72 0.00 2.24
1735 1783 1.216710 GAGTTCTCTCCTGCACCGG 59.783 63.158 0.00 0.00 34.87 5.28
1767 1815 2.202783 GGCGGCAATGGCATGTTC 60.203 61.111 7.75 0.00 43.71 3.18
1789 1837 2.515901 GCGGGGCCCAGATAATGT 59.484 61.111 27.79 0.00 0.00 2.71
1793 1841 0.550914 GGGGCCCAGATAATGTGACA 59.449 55.000 26.86 0.00 0.00 3.58
1825 1873 0.859232 GGTCAGTAGTTGTGTGCGTG 59.141 55.000 0.00 0.00 0.00 5.34
1859 1907 0.678684 TCATGCATGTGTCTGCTGGG 60.679 55.000 25.43 0.00 42.75 4.45
1877 1927 4.394729 CTGGGTTATGTGTGTAGGTGTTT 58.605 43.478 0.00 0.00 0.00 2.83
1882 1932 7.506261 TGGGTTATGTGTGTAGGTGTTTATTTT 59.494 33.333 0.00 0.00 0.00 1.82
2049 2101 5.776173 TGGTGTTATTTGTTGGGTACTTG 57.224 39.130 0.00 0.00 0.00 3.16
2078 2131 6.869695 ACATGCATGTTGATGTTATGATTGT 58.130 32.000 26.61 0.00 37.90 2.71
2079 2132 7.998580 ACATGCATGTTGATGTTATGATTGTA 58.001 30.769 26.61 0.00 37.90 2.41
2080 2133 7.916977 ACATGCATGTTGATGTTATGATTGTAC 59.083 33.333 26.61 0.00 37.90 2.90
2081 2134 7.628769 TGCATGTTGATGTTATGATTGTACT 57.371 32.000 0.00 0.00 31.50 2.73
2082 2135 7.696755 TGCATGTTGATGTTATGATTGTACTC 58.303 34.615 0.00 0.00 31.50 2.59
2083 2136 7.134815 GCATGTTGATGTTATGATTGTACTCC 58.865 38.462 0.00 0.00 31.50 3.85
2084 2137 7.642669 CATGTTGATGTTATGATTGTACTCCC 58.357 38.462 0.00 0.00 0.00 4.30
2085 2138 6.957631 TGTTGATGTTATGATTGTACTCCCT 58.042 36.000 0.00 0.00 0.00 4.20
2086 2139 7.047891 TGTTGATGTTATGATTGTACTCCCTC 58.952 38.462 0.00 0.00 0.00 4.30
2087 2140 6.174720 TGATGTTATGATTGTACTCCCTCC 57.825 41.667 0.00 0.00 0.00 4.30
2088 2141 4.665833 TGTTATGATTGTACTCCCTCCG 57.334 45.455 0.00 0.00 0.00 4.63
2089 2142 4.028131 TGTTATGATTGTACTCCCTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
2090 2143 4.098960 TGTTATGATTGTACTCCCTCCGTC 59.901 45.833 0.00 0.00 0.00 4.79
2091 2144 1.481871 TGATTGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
2092 2145 0.751452 GATTGTACTCCCTCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
2093 2146 0.338814 ATTGTACTCCCTCCGTCCCT 59.661 55.000 0.00 0.00 0.00 4.20
2094 2147 1.002069 TTGTACTCCCTCCGTCCCTA 58.998 55.000 0.00 0.00 0.00 3.53
2095 2148 0.549950 TGTACTCCCTCCGTCCCTAG 59.450 60.000 0.00 0.00 0.00 3.02
2096 2149 0.842635 GTACTCCCTCCGTCCCTAGA 59.157 60.000 0.00 0.00 0.00 2.43
2097 2150 1.424684 GTACTCCCTCCGTCCCTAGAT 59.575 57.143 0.00 0.00 0.00 1.98
2098 2151 1.830486 ACTCCCTCCGTCCCTAGATA 58.170 55.000 0.00 0.00 0.00 1.98
2099 2152 2.360230 ACTCCCTCCGTCCCTAGATAT 58.640 52.381 0.00 0.00 0.00 1.63
2100 2153 3.539440 ACTCCCTCCGTCCCTAGATATA 58.461 50.000 0.00 0.00 0.00 0.86
2101 2154 3.921486 ACTCCCTCCGTCCCTAGATATAA 59.079 47.826 0.00 0.00 0.00 0.98
2102 2155 4.544968 ACTCCCTCCGTCCCTAGATATAAT 59.455 45.833 0.00 0.00 0.00 1.28
2103 2156 5.126699 TCCCTCCGTCCCTAGATATAATC 57.873 47.826 0.00 0.00 0.00 1.75
2104 2157 4.794616 TCCCTCCGTCCCTAGATATAATCT 59.205 45.833 0.00 0.00 43.33 2.40
2105 2158 5.255679 TCCCTCCGTCCCTAGATATAATCTT 59.744 44.000 0.00 0.00 40.76 2.40
2106 2159 5.958987 CCCTCCGTCCCTAGATATAATCTTT 59.041 44.000 0.00 0.00 40.76 2.52
2107 2160 6.440965 CCCTCCGTCCCTAGATATAATCTTTT 59.559 42.308 0.00 0.00 40.76 2.27
2108 2161 7.038231 CCCTCCGTCCCTAGATATAATCTTTTT 60.038 40.741 0.00 0.00 40.76 1.94
2109 2162 9.032624 CCTCCGTCCCTAGATATAATCTTTTTA 57.967 37.037 0.00 0.00 40.76 1.52
2111 2164 9.818270 TCCGTCCCTAGATATAATCTTTTTAGA 57.182 33.333 0.00 0.00 40.76 2.10
2112 2165 9.857957 CCGTCCCTAGATATAATCTTTTTAGAC 57.142 37.037 0.00 0.00 40.76 2.59
2184 2237 8.594881 AGTATAGATTCACTTATTTGGCTTCG 57.405 34.615 0.00 0.00 0.00 3.79
2185 2238 8.204836 AGTATAGATTCACTTATTTGGCTTCGT 58.795 33.333 0.00 0.00 0.00 3.85
2186 2239 9.472361 GTATAGATTCACTTATTTGGCTTCGTA 57.528 33.333 0.00 0.00 0.00 3.43
2188 2241 7.251704 AGATTCACTTATTTGGCTTCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2189 2242 6.823689 AGATTCACTTATTTGGCTTCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2190 2243 7.985184 AGATTCACTTATTTGGCTTCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
2191 2244 7.534085 TTCACTTATTTGGCTTCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2192 2245 6.636705 TCACTTATTTGGCTTCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
2193 2246 6.755141 TCACTTATTTGGCTTCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
2194 2247 6.533723 CACTTATTTGGCTTCGTATGTAGTCA 59.466 38.462 0.00 0.00 0.00 3.41
2195 2248 6.534079 ACTTATTTGGCTTCGTATGTAGTCAC 59.466 38.462 0.00 0.00 25.86 3.67
2196 2249 4.530710 TTTGGCTTCGTATGTAGTCACT 57.469 40.909 0.00 0.00 25.86 3.41
2197 2250 4.530710 TTGGCTTCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 25.86 3.16
2198 2251 3.845178 TGGCTTCGTATGTAGTCACTTG 58.155 45.455 0.00 0.00 0.00 3.16
2199 2252 3.257375 TGGCTTCGTATGTAGTCACTTGT 59.743 43.478 0.00 0.00 0.00 3.16
2200 2253 4.243270 GGCTTCGTATGTAGTCACTTGTT 58.757 43.478 0.00 0.00 0.00 2.83
2201 2254 4.091509 GGCTTCGTATGTAGTCACTTGTTG 59.908 45.833 0.00 0.00 0.00 3.33
2202 2255 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2203 2256 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2204 2257 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2205 2258 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2206 2259 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2207 2260 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2208 2261 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
2209 2262 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
2237 2290 8.502105 AAAGACTTATATTTTGTAACGGAGGG 57.498 34.615 0.00 0.00 0.00 4.30
2238 2291 7.427989 AGACTTATATTTTGTAACGGAGGGA 57.572 36.000 0.00 0.00 0.00 4.20
2239 2292 7.498443 AGACTTATATTTTGTAACGGAGGGAG 58.502 38.462 0.00 0.00 0.00 4.30
2382 2436 4.977741 TGTCCAAACGATCGTAACTTTC 57.022 40.909 23.04 11.12 0.00 2.62
2431 2485 6.074623 GCTCATATATATGTGCATACGCTCAC 60.075 42.308 30.93 9.23 46.63 3.51
2445 2499 1.090052 GCTCACCCCTATGAACGCAC 61.090 60.000 0.00 0.00 0.00 5.34
2452 2506 1.416401 CCCTATGAACGCACACCCTAT 59.584 52.381 0.00 0.00 0.00 2.57
2467 2521 3.007398 CACCCTATTCCTATGAGCACCTC 59.993 52.174 0.00 0.00 0.00 3.85
2471 2525 4.590647 CCTATTCCTATGAGCACCTCTGAA 59.409 45.833 0.00 0.00 0.00 3.02
2479 2534 1.803555 GAGCACCTCTGAAAACTGAGC 59.196 52.381 0.00 0.00 0.00 4.26
2485 2540 1.795286 CTCTGAAAACTGAGCCGACAC 59.205 52.381 0.00 0.00 0.00 3.67
2504 2559 5.497126 CGACACGTCATCTTGAGATTTTACG 60.497 44.000 14.06 14.06 37.99 3.18
2520 2575 7.759465 AGATTTTACGAAGTCATCTTAGACGA 58.241 34.615 0.00 0.00 43.93 4.20
2522 2577 6.492007 TTTACGAAGTCATCTTAGACGACT 57.508 37.500 5.04 5.04 43.93 4.18
2527 2582 5.554883 CGAAGTCATCTTAGACGACTCGTAG 60.555 48.000 11.45 0.00 43.24 3.51
2529 2584 5.177326 AGTCATCTTAGACGACTCGTAGTT 58.823 41.667 5.04 0.00 41.37 2.24
2532 2587 4.917887 TCTTAGACGACTCGTAGTTGAC 57.082 45.455 3.53 3.88 41.37 3.18
2567 2622 5.356190 TCTCCTACTAAACGTGTATCACCAG 59.644 44.000 0.00 0.00 0.00 4.00
2581 2636 8.088365 CGTGTATCACCAGAAATCCTGATATAA 58.912 37.037 0.00 0.00 45.78 0.98
2598 2653 9.778993 CCTGATATAAATTCAAGGATAAATGCG 57.221 33.333 0.00 0.00 0.00 4.73
2603 2658 4.558538 ATTCAAGGATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2629 2684 0.698238 TTGAATCCTGGTGGACTGGG 59.302 55.000 0.00 0.00 46.51 4.45
2634 2689 2.587060 TCCTGGTGGACTGGGATAAT 57.413 50.000 0.00 0.00 37.46 1.28
2637 2692 2.372172 CCTGGTGGACTGGGATAATACC 59.628 54.545 0.00 0.00 34.73 2.73
2641 2696 2.036862 GTGGACTGGGATAATACCGTCC 59.963 54.545 16.42 16.42 44.53 4.79
2642 2697 2.090943 TGGACTGGGATAATACCGTCCT 60.091 50.000 20.63 0.00 44.55 3.85
2656 2711 3.029570 ACCGTCCTCCTAACCATCTAAC 58.970 50.000 0.00 0.00 0.00 2.34
2660 2715 4.885907 CGTCCTCCTAACCATCTAACTACA 59.114 45.833 0.00 0.00 0.00 2.74
2663 2718 4.643784 CCTCCTAACCATCTAACTACACGT 59.356 45.833 0.00 0.00 0.00 4.49
2664 2719 5.126707 CCTCCTAACCATCTAACTACACGTT 59.873 44.000 0.00 0.00 39.64 3.99
2665 2720 5.957798 TCCTAACCATCTAACTACACGTTG 58.042 41.667 0.00 0.00 37.05 4.10
2666 2721 5.105635 TCCTAACCATCTAACTACACGTTGG 60.106 44.000 0.00 0.00 37.05 3.77
2667 2722 4.612264 AACCATCTAACTACACGTTGGT 57.388 40.909 0.00 0.00 37.05 3.67
2668 2723 4.612264 ACCATCTAACTACACGTTGGTT 57.388 40.909 0.00 1.76 37.05 3.67
2669 2724 4.563061 ACCATCTAACTACACGTTGGTTC 58.437 43.478 0.00 0.00 37.05 3.62
2670 2725 3.611113 CCATCTAACTACACGTTGGTTCG 59.389 47.826 0.00 0.00 37.05 3.95
2671 2726 3.988379 TCTAACTACACGTTGGTTCGT 57.012 42.857 0.00 0.00 45.10 3.85
2672 2727 3.888934 TCTAACTACACGTTGGTTCGTC 58.111 45.455 0.00 0.00 42.27 4.20
2673 2728 1.856802 AACTACACGTTGGTTCGTCC 58.143 50.000 0.00 0.00 42.27 4.79
2674 2729 0.746063 ACTACACGTTGGTTCGTCCA 59.254 50.000 0.00 0.00 45.60 4.02
2765 2820 8.383619 CAGTCTGTAACAGTATTGCATTACTTC 58.616 37.037 16.66 9.53 29.93 3.01
2775 2830 1.398041 TGCATTACTTCGTGCAGATGC 59.602 47.619 0.00 0.00 45.60 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.869667 AGGAAGATAGTCATGTAGTAACATAGT 57.130 33.333 0.00 0.00 44.70 2.12
28 29 8.589701 TGAAGGAAGATAGTCATGTAGTAACA 57.410 34.615 0.00 0.00 40.69 2.41
35 36 8.844244 GCAATAAATGAAGGAAGATAGTCATGT 58.156 33.333 0.00 0.00 31.20 3.21
36 37 9.064706 AGCAATAAATGAAGGAAGATAGTCATG 57.935 33.333 0.00 0.00 31.20 3.07
37 38 9.638176 AAGCAATAAATGAAGGAAGATAGTCAT 57.362 29.630 0.00 0.00 32.09 3.06
38 39 8.896744 CAAGCAATAAATGAAGGAAGATAGTCA 58.103 33.333 0.00 0.00 0.00 3.41
39 40 7.859875 GCAAGCAATAAATGAAGGAAGATAGTC 59.140 37.037 0.00 0.00 0.00 2.59
40 41 7.201857 GGCAAGCAATAAATGAAGGAAGATAGT 60.202 37.037 0.00 0.00 0.00 2.12
41 42 7.144000 GGCAAGCAATAAATGAAGGAAGATAG 58.856 38.462 0.00 0.00 0.00 2.08
42 43 6.606796 TGGCAAGCAATAAATGAAGGAAGATA 59.393 34.615 0.00 0.00 0.00 1.98
43 44 5.422970 TGGCAAGCAATAAATGAAGGAAGAT 59.577 36.000 0.00 0.00 0.00 2.40
44 45 4.771577 TGGCAAGCAATAAATGAAGGAAGA 59.228 37.500 0.00 0.00 0.00 2.87
45 46 4.866486 GTGGCAAGCAATAAATGAAGGAAG 59.134 41.667 0.00 0.00 0.00 3.46
46 47 4.282957 TGTGGCAAGCAATAAATGAAGGAA 59.717 37.500 0.00 0.00 0.00 3.36
47 48 3.831333 TGTGGCAAGCAATAAATGAAGGA 59.169 39.130 0.00 0.00 0.00 3.36
48 49 4.191033 TGTGGCAAGCAATAAATGAAGG 57.809 40.909 0.00 0.00 0.00 3.46
49 50 5.412640 TGATGTGGCAAGCAATAAATGAAG 58.587 37.500 0.00 0.00 0.00 3.02
50 51 5.402997 TGATGTGGCAAGCAATAAATGAA 57.597 34.783 0.00 0.00 0.00 2.57
51 52 5.361571 AGATGATGTGGCAAGCAATAAATGA 59.638 36.000 0.00 0.00 0.00 2.57
52 53 5.597806 AGATGATGTGGCAAGCAATAAATG 58.402 37.500 0.00 0.00 0.00 2.32
53 54 5.864418 AGATGATGTGGCAAGCAATAAAT 57.136 34.783 0.00 0.00 0.00 1.40
54 55 6.964807 ATAGATGATGTGGCAAGCAATAAA 57.035 33.333 0.00 0.00 0.00 1.40
55 56 6.964807 AATAGATGATGTGGCAAGCAATAA 57.035 33.333 0.00 0.00 0.00 1.40
56 57 6.964807 AAATAGATGATGTGGCAAGCAATA 57.035 33.333 0.00 0.00 0.00 1.90
57 58 5.864418 AAATAGATGATGTGGCAAGCAAT 57.136 34.783 0.00 0.00 0.00 3.56
58 59 5.664294 AAAATAGATGATGTGGCAAGCAA 57.336 34.783 0.00 0.00 0.00 3.91
59 60 6.774170 AGATAAAATAGATGATGTGGCAAGCA 59.226 34.615 0.00 0.00 0.00 3.91
60 61 7.211966 AGATAAAATAGATGATGTGGCAAGC 57.788 36.000 0.00 0.00 0.00 4.01
61 62 9.716531 TCTAGATAAAATAGATGATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
91 92 8.639761 GGAGTAACATAGGTAGTAACATCACAT 58.360 37.037 0.00 0.00 0.00 3.21
92 93 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
93 94 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
94 95 7.127405 TGGGAGTAACATAGGTAGTAACATCA 58.873 38.462 0.00 0.00 0.00 3.07
95 96 7.592885 TGGGAGTAACATAGGTAGTAACATC 57.407 40.000 0.00 0.00 0.00 3.06
96 97 8.429641 CAATGGGAGTAACATAGGTAGTAACAT 58.570 37.037 0.00 0.00 0.00 2.71
97 98 7.400915 ACAATGGGAGTAACATAGGTAGTAACA 59.599 37.037 0.00 0.00 0.00 2.41
98 99 7.709613 CACAATGGGAGTAACATAGGTAGTAAC 59.290 40.741 0.00 0.00 0.00 2.50
99 100 7.147620 CCACAATGGGAGTAACATAGGTAGTAA 60.148 40.741 0.00 0.00 32.67 2.24
100 101 6.325545 CCACAATGGGAGTAACATAGGTAGTA 59.674 42.308 0.00 0.00 32.67 1.82
101 102 5.130477 CCACAATGGGAGTAACATAGGTAGT 59.870 44.000 0.00 0.00 32.67 2.73
102 103 5.611374 CCACAATGGGAGTAACATAGGTAG 58.389 45.833 0.00 0.00 32.67 3.18
103 104 5.623956 CCACAATGGGAGTAACATAGGTA 57.376 43.478 0.00 0.00 32.67 3.08
104 105 4.503714 CCACAATGGGAGTAACATAGGT 57.496 45.455 0.00 0.00 32.67 3.08
117 118 5.934402 ACTAGTAAGACTACCCACAATGG 57.066 43.478 0.00 0.00 37.25 3.16
118 119 7.642082 ACTACTAGTAAGACTACCCACAATG 57.358 40.000 3.76 0.00 0.00 2.82
133 134 9.948964 TGTGTGATGTTACTCTTACTACTAGTA 57.051 33.333 1.89 1.89 0.00 1.82
134 135 8.859236 TGTGTGATGTTACTCTTACTACTAGT 57.141 34.615 0.00 0.00 0.00 2.57
140 141 9.809096 CTTGATATGTGTGATGTTACTCTTACT 57.191 33.333 0.00 0.00 0.00 2.24
141 142 9.035607 CCTTGATATGTGTGATGTTACTCTTAC 57.964 37.037 0.00 0.00 0.00 2.34
142 143 7.710907 GCCTTGATATGTGTGATGTTACTCTTA 59.289 37.037 0.00 0.00 0.00 2.10
143 144 6.540189 GCCTTGATATGTGTGATGTTACTCTT 59.460 38.462 0.00 0.00 0.00 2.85
144 145 6.051717 GCCTTGATATGTGTGATGTTACTCT 58.948 40.000 0.00 0.00 0.00 3.24
145 146 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
146 147 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
147 148 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
148 149 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
149 150 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
150 151 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
151 152 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
152 153 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
153 154 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
154 155 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
155 156 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
156 157 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
157 158 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
158 159 7.492020 GCTATAGACTCATCTTGCCTTGATATG 59.508 40.741 3.21 0.00 36.29 1.78
159 160 7.364585 GGCTATAGACTCATCTTGCCTTGATAT 60.365 40.741 3.21 0.00 39.50 1.63
160 161 6.071108 GGCTATAGACTCATCTTGCCTTGATA 60.071 42.308 3.21 0.00 39.50 2.15
161 162 5.279910 GGCTATAGACTCATCTTGCCTTGAT 60.280 44.000 3.21 0.00 39.50 2.57
162 163 4.039730 GGCTATAGACTCATCTTGCCTTGA 59.960 45.833 3.21 0.00 39.50 3.02
163 164 4.040217 AGGCTATAGACTCATCTTGCCTTG 59.960 45.833 0.83 0.00 45.01 3.61
164 165 4.230455 AGGCTATAGACTCATCTTGCCTT 58.770 43.478 0.83 0.00 45.01 4.35
165 166 3.855668 AGGCTATAGACTCATCTTGCCT 58.144 45.455 0.83 0.00 43.78 4.75
166 167 5.730296 TTAGGCTATAGACTCATCTTGCC 57.270 43.478 12.64 0.00 41.26 4.52
167 168 9.883142 ATTTATTAGGCTATAGACTCATCTTGC 57.117 33.333 12.64 0.00 36.29 4.01
221 222 6.932960 GTGGGGAGTAACATATATGTGGTAAC 59.067 42.308 18.94 13.91 41.61 2.50
222 223 6.847567 AGTGGGGAGTAACATATATGTGGTAA 59.152 38.462 18.94 3.13 41.61 2.85
223 224 6.387127 AGTGGGGAGTAACATATATGTGGTA 58.613 40.000 18.94 6.18 41.61 3.25
224 225 5.224441 AGTGGGGAGTAACATATATGTGGT 58.776 41.667 18.94 7.17 41.61 4.16
225 226 5.825593 AGTGGGGAGTAACATATATGTGG 57.174 43.478 18.94 0.00 41.61 4.17
229 230 9.854303 ACCTTTATAGTGGGGAGTAACATATAT 57.146 33.333 0.00 0.00 0.00 0.86
231 232 9.678981 TTACCTTTATAGTGGGGAGTAACATAT 57.321 33.333 0.00 0.00 0.00 1.78
232 233 9.678981 ATTACCTTTATAGTGGGGAGTAACATA 57.321 33.333 0.00 0.00 0.00 2.29
233 234 8.577164 ATTACCTTTATAGTGGGGAGTAACAT 57.423 34.615 0.00 0.00 0.00 2.71
234 235 9.504705 TTATTACCTTTATAGTGGGGAGTAACA 57.495 33.333 0.00 0.00 0.00 2.41
286 287 9.793259 CCACAATGGGTATTAACATAGAATAGT 57.207 33.333 0.00 0.00 32.67 2.12
304 305 7.703058 ATTTTTCTTAGACTACCCACAATGG 57.297 36.000 0.00 0.00 37.25 3.16
307 308 9.158233 CGATTATTTTTCTTAGACTACCCACAA 57.842 33.333 0.00 0.00 0.00 3.33
308 309 7.279313 GCGATTATTTTTCTTAGACTACCCACA 59.721 37.037 0.00 0.00 0.00 4.17
309 310 7.516312 CGCGATTATTTTTCTTAGACTACCCAC 60.516 40.741 0.00 0.00 0.00 4.61
310 311 6.477688 CGCGATTATTTTTCTTAGACTACCCA 59.522 38.462 0.00 0.00 0.00 4.51
311 312 6.073927 CCGCGATTATTTTTCTTAGACTACCC 60.074 42.308 8.23 0.00 0.00 3.69
312 313 6.563567 GCCGCGATTATTTTTCTTAGACTACC 60.564 42.308 8.23 0.00 0.00 3.18
313 314 6.353302 GCCGCGATTATTTTTCTTAGACTAC 58.647 40.000 8.23 0.00 0.00 2.73
314 315 5.174398 CGCCGCGATTATTTTTCTTAGACTA 59.826 40.000 8.23 0.00 0.00 2.59
315 316 4.025979 CGCCGCGATTATTTTTCTTAGACT 60.026 41.667 8.23 0.00 0.00 3.24
316 317 4.026310 TCGCCGCGATTATTTTTCTTAGAC 60.026 41.667 12.39 0.00 0.00 2.59
317 318 4.026310 GTCGCCGCGATTATTTTTCTTAGA 60.026 41.667 20.03 0.00 38.42 2.10
318 319 4.025979 AGTCGCCGCGATTATTTTTCTTAG 60.026 41.667 20.03 0.00 38.42 2.18
319 320 3.866910 AGTCGCCGCGATTATTTTTCTTA 59.133 39.130 20.03 0.00 38.42 2.10
320 321 2.676342 AGTCGCCGCGATTATTTTTCTT 59.324 40.909 20.03 0.00 38.42 2.52
321 322 2.277084 AGTCGCCGCGATTATTTTTCT 58.723 42.857 20.03 5.58 38.42 2.52
322 323 2.732001 AGTCGCCGCGATTATTTTTC 57.268 45.000 20.03 3.07 38.42 2.29
323 324 3.371591 TGTAAGTCGCCGCGATTATTTTT 59.628 39.130 20.03 9.24 38.42 1.94
324 325 2.931325 TGTAAGTCGCCGCGATTATTTT 59.069 40.909 20.03 10.85 38.42 1.82
325 326 2.542597 TGTAAGTCGCCGCGATTATTT 58.457 42.857 20.03 13.13 38.42 1.40
326 327 2.212869 TGTAAGTCGCCGCGATTATT 57.787 45.000 20.03 15.83 38.42 1.40
327 328 2.433868 ATGTAAGTCGCCGCGATTAT 57.566 45.000 20.03 10.62 38.42 1.28
328 329 2.212869 AATGTAAGTCGCCGCGATTA 57.787 45.000 20.03 14.58 38.42 1.75
329 330 2.212869 TAATGTAAGTCGCCGCGATT 57.787 45.000 20.03 12.45 38.42 3.34
330 331 1.856597 GTTAATGTAAGTCGCCGCGAT 59.143 47.619 20.03 6.42 38.42 4.58
331 332 1.135315 AGTTAATGTAAGTCGCCGCGA 60.135 47.619 12.39 12.39 0.00 5.87
332 333 1.254570 GAGTTAATGTAAGTCGCCGCG 59.745 52.381 6.39 6.39 0.00 6.46
333 334 2.281762 CAGAGTTAATGTAAGTCGCCGC 59.718 50.000 0.00 0.00 41.78 6.53
334 335 3.303495 CACAGAGTTAATGTAAGTCGCCG 59.697 47.826 0.00 0.00 41.78 6.46
335 336 4.243270 ACACAGAGTTAATGTAAGTCGCC 58.757 43.478 0.00 0.00 41.78 5.54
336 337 5.860182 TGTACACAGAGTTAATGTAAGTCGC 59.140 40.000 0.00 0.00 41.78 5.19
337 338 7.082602 ACTGTACACAGAGTTAATGTAAGTCG 58.917 38.462 16.05 0.00 46.59 4.18
338 339 8.813643 AACTGTACACAGAGTTAATGTAAGTC 57.186 34.615 16.05 0.00 46.59 3.01
339 340 9.909644 CTAACTGTACACAGAGTTAATGTAAGT 57.090 33.333 16.05 0.00 46.59 2.24
343 344 9.998106 AAATCTAACTGTACACAGAGTTAATGT 57.002 29.630 16.05 0.00 46.59 2.71
348 349 8.975439 CGTTAAAATCTAACTGTACACAGAGTT 58.025 33.333 16.05 4.54 46.59 3.01
349 350 8.355169 TCGTTAAAATCTAACTGTACACAGAGT 58.645 33.333 16.05 6.06 46.59 3.24
350 351 8.738199 TCGTTAAAATCTAACTGTACACAGAG 57.262 34.615 16.05 4.28 46.59 3.35
351 352 8.355169 ACTCGTTAAAATCTAACTGTACACAGA 58.645 33.333 16.05 0.00 46.59 3.41
353 354 7.922278 ACACTCGTTAAAATCTAACTGTACACA 59.078 33.333 0.00 0.00 0.00 3.72
354 355 8.290663 ACACTCGTTAAAATCTAACTGTACAC 57.709 34.615 0.00 0.00 0.00 2.90
355 356 9.616634 CTACACTCGTTAAAATCTAACTGTACA 57.383 33.333 0.00 0.00 0.00 2.90
356 357 9.831737 TCTACACTCGTTAAAATCTAACTGTAC 57.168 33.333 0.00 0.00 0.00 2.90
357 358 9.831737 GTCTACACTCGTTAAAATCTAACTGTA 57.168 33.333 0.00 0.00 0.00 2.74
358 359 7.536622 CGTCTACACTCGTTAAAATCTAACTGT 59.463 37.037 0.00 0.00 0.00 3.55
359 360 7.536622 ACGTCTACACTCGTTAAAATCTAACTG 59.463 37.037 0.00 0.00 36.93 3.16
360 361 7.536622 CACGTCTACACTCGTTAAAATCTAACT 59.463 37.037 0.00 0.00 38.23 2.24
361 362 7.201299 CCACGTCTACACTCGTTAAAATCTAAC 60.201 40.741 0.00 0.00 38.23 2.34
362 363 6.803320 CCACGTCTACACTCGTTAAAATCTAA 59.197 38.462 0.00 0.00 38.23 2.10
377 378 2.865119 TACCACTCTCCACGTCTACA 57.135 50.000 0.00 0.00 0.00 2.74
383 384 5.432885 ACAAAAATTTACCACTCTCCACG 57.567 39.130 0.00 0.00 0.00 4.94
388 389 7.418337 AAACTGGACAAAAATTTACCACTCT 57.582 32.000 0.00 0.00 0.00 3.24
420 421 3.298958 TCGAAAGGCGAGGCAGAT 58.701 55.556 0.00 0.00 45.59 2.90
446 447 9.643652 GCTTTTATTGAATCGATCACTCTAAAG 57.356 33.333 0.00 6.94 37.92 1.85
448 449 7.768582 TGGCTTTTATTGAATCGATCACTCTAA 59.231 33.333 0.00 0.00 37.92 2.10
449 450 7.272244 TGGCTTTTATTGAATCGATCACTCTA 58.728 34.615 0.00 0.00 37.92 2.43
451 452 6.258727 TCTGGCTTTTATTGAATCGATCACTC 59.741 38.462 0.00 0.00 37.92 3.51
452 453 6.115446 TCTGGCTTTTATTGAATCGATCACT 58.885 36.000 0.00 0.00 37.92 3.41
453 454 6.363577 TCTGGCTTTTATTGAATCGATCAC 57.636 37.500 0.00 0.00 37.92 3.06
454 455 5.528690 CCTCTGGCTTTTATTGAATCGATCA 59.471 40.000 0.00 0.00 35.85 2.92
455 456 5.561725 GCCTCTGGCTTTTATTGAATCGATC 60.562 44.000 0.00 0.00 46.69 3.69
456 457 4.276926 GCCTCTGGCTTTTATTGAATCGAT 59.723 41.667 0.73 0.00 46.69 3.59
458 459 3.957468 GCCTCTGGCTTTTATTGAATCG 58.043 45.455 0.73 0.00 46.69 3.34
527 530 1.068474 CCACGCTAGTAACACAGCAC 58.932 55.000 0.00 0.00 37.66 4.40
534 537 0.173708 AGCTCTGCCACGCTAGTAAC 59.826 55.000 0.00 0.00 34.11 2.50
535 538 0.456221 GAGCTCTGCCACGCTAGTAA 59.544 55.000 6.43 0.00 36.45 2.24
543 546 0.382515 CTACGTAGGAGCTCTGCCAC 59.617 60.000 15.07 5.66 0.00 5.01
583 622 5.428457 TGGCTTTTCTCCCATTCTATACAGA 59.572 40.000 0.00 0.00 0.00 3.41
612 651 7.217906 ACAGTTTTGAAACCCAACAGTAAAAA 58.782 30.769 3.14 0.00 39.71 1.94
687 727 3.304659 GCTTTCGATCTTTGCAGGACAAA 60.305 43.478 0.00 0.00 46.01 2.83
800 840 3.475494 TGTGTGGACAGTGCGGGT 61.475 61.111 0.00 0.00 0.00 5.28
804 844 0.179045 AGAAGGTGTGTGGACAGTGC 60.179 55.000 0.00 0.00 30.74 4.40
827 867 1.959985 CCAGTGAGTGAGTGAGTGAGT 59.040 52.381 0.00 0.00 0.00 3.41
841 881 1.005748 CGTGAGCAAGAGCCAGTGA 60.006 57.895 0.00 0.00 43.56 3.41
852 892 3.425227 CGTATATATACACGGCGTGAGCA 60.425 47.826 42.65 27.18 45.87 4.26
959 999 1.108727 AGGTGCAATGTGGGTGTGTG 61.109 55.000 0.00 0.00 0.00 3.82
994 1039 1.522580 GAGGAGCTTCCATGGCGTC 60.523 63.158 6.96 0.00 39.61 5.19
1213 1258 2.889045 AGTAGCAGAACTTGGTGTCGTA 59.111 45.455 0.00 0.00 38.18 3.43
1644 1692 2.549282 CCGTTGTCCAAGAACGCG 59.451 61.111 3.53 3.53 43.83 6.01
1789 1837 2.499693 TGACCACTCTCACAGTTTGTCA 59.500 45.455 0.00 0.00 40.01 3.58
1793 1841 3.961408 ACTACTGACCACTCTCACAGTTT 59.039 43.478 0.00 0.00 42.39 2.66
1825 1873 1.227263 ATGAGCCATCACGTACGCC 60.227 57.895 16.72 0.00 38.57 5.68
2049 2101 7.257003 TCATAACATCAACATGCATGTAAACC 58.743 34.615 31.55 0.00 40.80 3.27
2078 2131 1.830486 ATCTAGGGACGGAGGGAGTA 58.170 55.000 0.00 0.00 0.00 2.59
2079 2132 1.830486 TATCTAGGGACGGAGGGAGT 58.170 55.000 0.00 0.00 0.00 3.85
2080 2133 4.587976 TTATATCTAGGGACGGAGGGAG 57.412 50.000 0.00 0.00 0.00 4.30
2081 2134 4.794616 AGATTATATCTAGGGACGGAGGGA 59.205 45.833 0.00 0.00 38.00 4.20
2082 2135 5.132043 AGATTATATCTAGGGACGGAGGG 57.868 47.826 0.00 0.00 38.00 4.30
2083 2136 7.483580 AAAAGATTATATCTAGGGACGGAGG 57.516 40.000 0.00 0.00 39.08 4.30
2085 2138 9.818270 TCTAAAAAGATTATATCTAGGGACGGA 57.182 33.333 0.00 0.00 39.08 4.69
2086 2139 9.857957 GTCTAAAAAGATTATATCTAGGGACGG 57.142 37.037 0.00 0.00 39.08 4.79
2118 2171 9.692749 CATACATCCGTATGTTGTAGTCTATTT 57.307 33.333 0.00 0.00 46.70 1.40
2158 2211 9.046296 CGAAGCCAAATAAGTGAATCTATACTT 57.954 33.333 0.00 0.00 40.09 2.24
2159 2212 8.204836 ACGAAGCCAAATAAGTGAATCTATACT 58.795 33.333 0.00 0.00 0.00 2.12
2160 2213 8.366671 ACGAAGCCAAATAAGTGAATCTATAC 57.633 34.615 0.00 0.00 0.00 1.47
2162 2215 8.993121 CATACGAAGCCAAATAAGTGAATCTAT 58.007 33.333 0.00 0.00 0.00 1.98
2163 2216 7.985184 ACATACGAAGCCAAATAAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2164 2217 6.823689 ACATACGAAGCCAAATAAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2165 2218 7.016361 ACATACGAAGCCAAATAAGTGAATC 57.984 36.000 0.00 0.00 0.00 2.52
2166 2219 7.769044 ACTACATACGAAGCCAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
2167 2220 7.101054 ACTACATACGAAGCCAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
2168 2221 6.636705 ACTACATACGAAGCCAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
2169 2222 6.533723 TGACTACATACGAAGCCAAATAAGTG 59.466 38.462 0.00 0.00 0.00 3.16
2170 2223 6.534079 GTGACTACATACGAAGCCAAATAAGT 59.466 38.462 0.00 0.00 0.00 2.24
2171 2224 6.757010 AGTGACTACATACGAAGCCAAATAAG 59.243 38.462 0.00 0.00 0.00 1.73
2172 2225 6.636705 AGTGACTACATACGAAGCCAAATAA 58.363 36.000 0.00 0.00 0.00 1.40
2173 2226 6.216801 AGTGACTACATACGAAGCCAAATA 57.783 37.500 0.00 0.00 0.00 1.40
2174 2227 5.086104 AGTGACTACATACGAAGCCAAAT 57.914 39.130 0.00 0.00 0.00 2.32
2175 2228 4.530710 AGTGACTACATACGAAGCCAAA 57.469 40.909 0.00 0.00 0.00 3.28
2176 2229 4.242475 CAAGTGACTACATACGAAGCCAA 58.758 43.478 0.00 0.00 0.00 4.52
2177 2230 3.257375 ACAAGTGACTACATACGAAGCCA 59.743 43.478 0.00 0.00 0.00 4.75
2178 2231 3.846360 ACAAGTGACTACATACGAAGCC 58.154 45.455 0.00 0.00 0.00 4.35
2179 2232 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2180 2233 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2181 2234 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2182 2235 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2183 2236 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
2211 2264 8.953313 CCCTCCGTTACAAAATATAAGTCTTTT 58.047 33.333 0.00 0.00 0.00 2.27
2212 2265 8.323567 TCCCTCCGTTACAAAATATAAGTCTTT 58.676 33.333 0.00 0.00 0.00 2.52
2213 2266 7.854337 TCCCTCCGTTACAAAATATAAGTCTT 58.146 34.615 0.00 0.00 0.00 3.01
2214 2267 7.125356 ACTCCCTCCGTTACAAAATATAAGTCT 59.875 37.037 0.00 0.00 0.00 3.24
2215 2268 7.270779 ACTCCCTCCGTTACAAAATATAAGTC 58.729 38.462 0.00 0.00 0.00 3.01
2216 2269 7.191593 ACTCCCTCCGTTACAAAATATAAGT 57.808 36.000 0.00 0.00 0.00 2.24
2223 2276 9.382275 GTAAATTATACTCCCTCCGTTACAAAA 57.618 33.333 0.00 0.00 0.00 2.44
2224 2277 8.538701 TGTAAATTATACTCCCTCCGTTACAAA 58.461 33.333 0.00 0.00 0.00 2.83
2225 2278 8.076910 TGTAAATTATACTCCCTCCGTTACAA 57.923 34.615 0.00 0.00 0.00 2.41
2226 2279 7.658525 TGTAAATTATACTCCCTCCGTTACA 57.341 36.000 0.00 0.00 0.00 2.41
2263 2316 5.757850 AGAAAACGAGAGCAAACTCAATT 57.242 34.783 0.00 0.00 46.09 2.32
2294 2347 3.130340 TGCACCAAACTTTGAAACTCTCC 59.870 43.478 2.87 0.00 0.00 3.71
2382 2436 7.010552 AGCTCTTGCGTCTGTATTATGTTAAAG 59.989 37.037 0.00 0.00 45.42 1.85
2426 2480 1.090052 GTGCGTTCATAGGGGTGAGC 61.090 60.000 0.00 0.00 0.00 4.26
2431 2485 1.451387 GGGTGTGCGTTCATAGGGG 60.451 63.158 0.00 0.00 0.00 4.79
2445 2499 2.975489 AGGTGCTCATAGGAATAGGGTG 59.025 50.000 0.00 0.00 0.00 4.61
2452 2506 4.287067 AGTTTTCAGAGGTGCTCATAGGAA 59.713 41.667 0.00 0.00 32.06 3.36
2467 2521 0.508641 CGTGTCGGCTCAGTTTTCAG 59.491 55.000 0.00 0.00 0.00 3.02
2471 2525 0.033504 ATGACGTGTCGGCTCAGTTT 59.966 50.000 0.00 0.00 35.04 2.66
2479 2534 2.568696 ATCTCAAGATGACGTGTCGG 57.431 50.000 0.00 0.00 32.68 4.79
2485 2540 6.308041 TGACTTCGTAAAATCTCAAGATGACG 59.692 38.462 12.58 12.58 37.33 4.35
2532 2587 1.461559 AGTAGGAGAAGACGTTCCCG 58.538 55.000 0.28 0.00 40.83 5.14
2540 2595 6.094603 GGTGATACACGTTTAGTAGGAGAAGA 59.905 42.308 0.00 0.00 34.83 2.87
2543 2598 5.255687 TGGTGATACACGTTTAGTAGGAGA 58.744 41.667 0.00 0.00 34.83 3.71
2546 2601 5.571784 TCTGGTGATACACGTTTAGTAGG 57.428 43.478 0.00 0.00 34.83 3.18
2548 2603 7.037438 GGATTTCTGGTGATACACGTTTAGTA 58.963 38.462 0.00 0.00 34.83 1.82
2550 2605 6.036083 CAGGATTTCTGGTGATACACGTTTAG 59.964 42.308 0.00 0.00 39.76 1.85
2552 2607 4.695455 CAGGATTTCTGGTGATACACGTTT 59.305 41.667 0.00 0.00 39.76 3.60
2581 2636 4.496341 CGTGCTCGCATTTATCCTTGAATT 60.496 41.667 0.00 0.00 0.00 2.17
2596 2651 1.004504 GATTCAAATCCTCGTGCTCGC 60.005 52.381 2.69 0.00 36.96 5.03
2620 2675 2.036862 GGACGGTATTATCCCAGTCCAC 59.963 54.545 10.91 0.00 41.35 4.02
2629 2684 5.715753 AGATGGTTAGGAGGACGGTATTATC 59.284 44.000 0.00 0.00 0.00 1.75
2634 2689 4.079558 AGTTAGATGGTTAGGAGGACGGTA 60.080 45.833 0.00 0.00 0.00 4.02
2637 2692 4.885907 TGTAGTTAGATGGTTAGGAGGACG 59.114 45.833 0.00 0.00 0.00 4.79
2641 2696 5.831702 ACGTGTAGTTAGATGGTTAGGAG 57.168 43.478 0.00 0.00 0.00 3.69
2642 2697 5.105635 CCAACGTGTAGTTAGATGGTTAGGA 60.106 44.000 0.00 0.00 42.02 2.94
2656 2711 3.573569 TGGACGAACCAACGTGTAG 57.426 52.632 0.00 0.00 46.75 2.74
2670 2725 8.792831 TTAGATTTAATTACGATCGTCTGGAC 57.207 34.615 26.48 9.81 0.00 4.02
2671 2726 9.806203 TTTTAGATTTAATTACGATCGTCTGGA 57.194 29.630 26.48 9.93 0.00 3.86
2710 2765 8.768019 CGCTCATGAAAAAGTGAGATATATTCA 58.232 33.333 6.56 0.00 43.50 2.57
2715 2770 5.525378 GTCCGCTCATGAAAAAGTGAGATAT 59.475 40.000 6.56 0.00 43.50 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.