>input_sequence_68756
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----ATGGAAGCTCCTCTGCACCAGCTGGCCCCCATGCAGCAGGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACG
CCGCGGCGACGATGGCCGCGACGGACATGGCGTGCCTCCAGCAGCAGCAGCAGCAGCTGATGCAGCTGCAGCCGGCGGCG
GCGAACCCGAACACGCCCTCGGGCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGTACGACACCAAGTTCTGCTACTA
CAACAACTACAACACGTCGCAGCCGCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCA
ACGTCCCCATCGGGGGCTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCCATGCGCCGCCCGCCCGTCCACTTC
GGCGCGCCTCCGCC---GCCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGCCTTCTCAGCTCGCTGTT
CGCGCTCGGCGCGGCGCCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGG
GGCTCGGAGGCAGCGCCGGGGAGTTTGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATG
CTCTGGCCGACCGCGTTCTTGGACAACGGCAATGTGGACACGTGGAAAGTATCCGGCGGCGGGGCGGCTGCCATGTGGGC
GCCGGAGTTCTCTCCTGCACCGGCGGTGGCACAGGTCGGCGGCAATGGCATGTTCCATGGCGGGGCCCAGATAATGTGA-
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>chr4D_1_TraesCS4D01G080100
TGTTACTCATACTAGTAGTAACTAACTATGTTACTACATGACTATCTTCCTTCATTTATTGCTTGCCACATCATCTATTT
TATCTAGATATATGTGATGTTACTACCTATGTTACTCCCATTGTGGGTAGTCTTACTAGTAGTAAGAGTAACATCACACA
TATCAAGGCAAGATGAGTCTATAGCCTAATAAATAAAGTGTTAATAAATAAAGTGTTGTATGTTACCACATATATGTTAC
TCCCCACTATAAAGGTAATAATATAGATTAGTAATATAGGCATGTTACTATTCTATGTTAATACCCATTGTGGGTAGTCT
AAGAAAAATAATCGCGGCGACTTACATTAACTCTGTGTACAGTTAGATTTTAACGAGTGTAGACGTGGAGAGTGGTAAAT
TTTTGTCCAGTTTTTTTACCATCTGCCTCGCCTTTCGAAGTTTCGACTTTAGAGTGATCGATTCAATA--AAAGCCAGAG
GCAGAAACACGCTGCAGATGGTAACAGTAGTATAGCTAGCAGTAGCATGGTGCTGTGTTACTAGCGTGGCAGAGCTCCTA
CGTAGCAGTAGTAA------------------------------------GCAAGCAAAACTCTGTATAGAATGGGAGAA
AAGCCATTTATTTTTACTGTTGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTA-GCTCACAG
GATTCCTTTGTCCTGCAAAGATCGAAAGCAACTCTACGTGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTC
TGTCACCCACCGTACCATCACCTACAACGCCTATCCAACACCCGCACTGTCCACACACCTTCTCTCACTCACTCACTCAC
TCACTGGCTCTTGCTCACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAAAACAGCAAAACTCACTGGTATCTAGC
CAAGTTAGCTCGAGCTCCATTGTCATAATACGAGCATCCACACACCCACATTGCACCTGCAG-----GGCCAACCTCGGA
CGCCATGGAAGCTCCTCTGCACCAGCTGGCCCCCATGCAGCAGGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACG
CCGCGGCGACGATGGCCGCGACGGACATGGCGTGCCTCCAGCAGCAGCAGCAGCAGCTGATGCAGCTGCAGCCGGCGGCG
GCGAACCCGAACACGCCCTCGGGCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGTACGACACCAAGTTCTGCTACTA
CAACAACTACAACACGTCGCAGCCGCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCA
ACGTCCCCATCGGGGGCTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCCATGCGCCGCCCGCCCGTCCACTTC
GGCGCGCCTCCGCC---GCCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGCCTTCTCAGCTCGCTGTT
CGCGCTCGGCGCGGCGCCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGG
GGCTCGGAGGCAGCGCCGGGGAGTTTGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATG
CTCTGGCCGACCGCGTTCTTGGACAACGGCAATGTGGACACGTGGAAAGTATCCGGCGGCGGGGCGGCTGCCATGTGGGC
GCCGGAGTTCTCTCCTGCACCGGCGGTGGCACAGGTCGGCGGCAATGGCATGTTCCATGGCGGGGCCCAGATAATGTGAC
AAACTGTGAGAGTGGTCAGTAGTTGTGTGCGTGGCGTACGTGATGGCTCATGCATGTGTCTGCTGGGTTATGTGTGT--A
GGTGTTTATTTTTTCTGCAAGTGCATGGCTCGTGTCGTGTCTTGTTCACGTAGTACGTAGTGGTACAAGGAGAGGCCTGT
CTAGTTTACAGTTTTGGTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTC--TCTACAGGTCTGATG
GTGTTATTTGTTGGGTACTTGGT-TTACATGCATGTTGATGTTATGATTGTACTCCCTCCGTCCCTAGATATAATCTTTT
TAGACATTTTAAATAGACTACAACATACGGATGTATGTAGACATATTTTAAAGTATAGATTCACTTATTTGGCTTCGTAT
GTAGTCACTTGTTGAAATCTTTAAAAAGACTTATATTTTGTAACGGAGGGAGTATAATTTACATTATTATCTATAAATTG
AGTTTGCTCTCGTTTTCTTTTTTGAGGGAGAGTTTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCA
AC-GAAAAAAGAAATGTCCAAACGATCGTAACTTTCTTTAACATAATACAGACGCAAGAGCTCATATATATGTGCATACG
CTCACCCCTATGAACGCACACCCTATTCCTATGAGCACCTCTGAAA-ACTGAGCCGACACGTCATCTTGAGATTTTACGA
AGTCATCTTAGACGACTCGTAGTTGACGGGAACGTCTTCTCCTACTAAACGTGTATCACCAGAAATCCTGATATAAATTC
AAGGATAAATGCGAGCACGAGGATTTGAATCCTGGTGGACTGGGATAATACCGTCCTCCTAACCATCTAACTACACGTTG
GTTCGTCCAGACGATCGTAATTAAATCTAAAAATCTCATAACTTTGAATATATCTCACTTTTTCATGAGCGGACAGTCTG
TAACAGTATTGCATTACTTCGTGCAGATGCTGCTTCATAGAAAAAT
>chr4B_364
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-------------------------------------------TAGATTTTAACGAGGGTAGAGGTGGGGAGTGGTAAAA
TATTGTCCA--TTTTTTACCCTCAGTGTCGTCTTTCGAAGTTTCGAGTGAATCTACCTTGCCACTCAATAAAAGCCAGAG
GCAGAAACACGCTGCAGATGGTAACAGTAGTATAGCTAGCAGTAGCATGTTGCTGTAGTACTAGCTTGGCAGAGCTCCTA
CGTAGCAGTGGTAAGCTAGCCGTGGGAAATGCATCACGAATAATACTTATGCAAGCAAAACACTGTATAGAATGGGGGAA
AAGCCATTTACTTTTACTGTTGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTAGGCTCACAG
GATTCC-TTGTCCTGCAAAGATCGAAAGCAACTCTACATGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTC
TGTCACCCACCGTACCATCACCCACAACGCCTATCCAGCGCCCACACTGTCCACACACCTTCTCTCGCTCACTCACTCTG
GT------------TCACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAA--------AACTCACTGGTATCTAGC
CAAGTTAGCTCGAGTTCCATTGCCATAATACGAGCATCTACGCACCCACATTGGACCTGCAG-----GGCCAACCTCGAA
CGCCATGGAAGCTCCTCTGCACCAGCTGGCCCCCATGCAGCAAGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACG
CCGCGGCGACGATGGCCGCGACGGACATGGCCTGCGTCCAGCAGCAGCAGCAGC---TGTTGCAGCTGCAGCCGGCGGCG
GCGAACCCGAACACGCCCTCGGCCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGCACGACACCAAGTTCTGCTACTA
CAACAACTACAACACGTCGCAGCCGCGCCACTTCTGCCGTGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCA
ACGTCCCCATCGGGGGCTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCGATGCGCCGCCCGCCCGTCCACTTC
GGCGCGCCTCCGCCA---CCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGACTTCTCAGCTCGCTGTT
CGCGCTAGGCGGGGCGCCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGG
GGCTCGGCGGCAGCGCCGGGGAGTTCGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATG
CTCTGGCCAACTGCGTTCTTGGACAACGGCAATGTGGACACGTGGAAGGTGTCCGGCGGCGGGGCGGCTGCCATGTGGGC
GCCGGAGTTCTCTTCTGCGCCGACGGTAGCACAGGTCGGCGGCAATGGCATGTTTCATGGCGGGGCCCAGATAATGGGAC
-AACTGTGAGAGTGGTCAGTAGTTTGTGC----GCGTACGTGATGGCTCATGCATGTGTCTGCTGGATTGTT--TGTGTA
GGTGTTAATTTGTTGTGCAAGTGCATGGCTCGTGTCGTGTCTTGTTCACGTAGTACGTAGTGGTACAAGGAGAGGCCTGT
CTAGTTTACAGTTTTGGTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTTTTTCTACAGGTCTGATG
ATGTTATTTGTTGGGTACTT-GT-TTACATGCATGTTGATGTTATGATTA------------------------------
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----------------------------------------------------TATAATTTACATTATTATCTATAGATTG
AGTTTGCTCTCCTTTTCTTTTCTGAGAGAGAGTCTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCA
ACTGAAAAAAGAAATGTCCAAACGATCGTAA-------------------------------------------------
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>chr4A_464
CAAG----------------------------------------------------------------------------
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--------------------------------------------------------------------TAAAAGCCAGAG
GCAGAAACACGCTGCAGATGGTAACAGTTGTATAGCTAGCAGTAGCATGTTGCTGTAGTACTAGCTCGGCAGAGCTCCTA
CGTAGCAGTAGTA----------------------------------------------------TATAGAATGGGAGAA
AAACCATTTACTTTTACTGTGGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTA-GCTCACAG
GATTCC-TTGTCCTGCAAAGATCGAAAGCAACTCTACATGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTC
TGTCACCCACCGTACCATCACCTACAACGCCTATCAGACTG----------CACACACCTTCTCTCGCTCGCTCACTCAC
ACACTCACTCTGGCTCACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAAAACAGCAAAACTCACCGGTATCTAGC
CAAGTTAGCTCGAGCTCCATTGTCACAATACGAGCGTCTACACACCCACATTGCACCTCCAGGGCCAGGCCAACCTCGAA
CGCCATGGAAGCCCCTCTGCACCAGCTGGCCCCCATGCAGCAAGCACTGCTCGCCCGTCCTCAGAACTGCAAGCACGACG
CCGCGGCGACCATGGCCGCGACGGACATGGCGTGCCTCCAGCAGCAGCAGCAGC---TGATGCAGCTGCAGCCGGCGGCG
GCGAACCCGAACACGCCCTCGGGCGCGGCACGGGAGCAGTGCCCGCGGTGCGCGTCTCACGACACCAAGTTCTGCTACTA
CAACAACTACAACACGTCGCAGCCGCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCA
ACGTCCCCATCGGGGGCTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGACGATGCGCCGCCCGCCCGTCCACTTC
GGTGCGCCTCCGCCGCCGCCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAGGGCGGCCTTCTCAGCTCGCTGTT
CGCGTTCGGCGCGGCGCCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGG
GGCTCGGCGGCGGCGCCGGGGAGTTCGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATG
CTCTGGCCGACAGCGTTCTTGGACAACGGCAATGTGGACACGTGGAAGGTGTCCGGCGGCGGGGCGGCTGCCATGTGGGC
GCCGGAGTTCTCTCCCGCGCCGACGGTAGCACAGGTCGGCGGCAATGGCATGTTTCATGGCGGGGCCCAGATAATGGGAC
-AACTGTGAGAGTGGTCAGTAGTTGTGTGCGTAGCGTACGTGATGGCTCATGCATGTGCCTGCTGGATTATGTGTGTGTA
GGTCTTAATTTGTTGTGCAAGTGCATGGCTCGTGTCGTGTCTTGTTTACGTAGTACGTAGTGGTACAAGGAGGGGCCTGT
CTAGTTTACAGTTTTGGTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTC--TCTACAGGTCTGATG
GTGTTATTTGTTGGGTACTT-GGGTTACATGCATGTTGATGTTATGATTG------------------------------
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----------------------------------------------------TATAATTTACATTATTATCTATAGATTG
GGTTTGCTCTCGTTTTCTTTTTTGAGAGAGAGTTTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCA
ACCGAAAAAAGAAATGTCCAAACAATCGTAGCTTTTTTTAACATAATACAGACGCAAGAGCTCATATATATGTGCATACA
CTCATCCCTATGAACGCATACCCTACTCCTATGAGCACCTTTGAGAGACTGAGTCGACATGTCATCTTGAGATTTTACAA
AGTCATCTTAGACGCCACGTAATCGATGGGAACGCCTCCTTCCATTGAACGTGTATCACCAAAAATCCTGATATATATTC
AAGGATAAATACAAGCATGAGGATTTGAATCCTGATGGACTGGAATAACACTGTCTGCCTAACCATCTAAGTACCCG---
--------------TCGTAATTGAATCAAAAAGTCTCATAACTTCGAATCTATCTCACTTTTTCATGAGCGGACAGTCTG
TAACAGTATTGCATTACTTTGTGCAGATGTTGCTTCATAAAAAAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-----S----S----------S
-S-------SS---------S--S-SS---S---------------S-SS-SSSSSS-S-SSS-SSS-------------
-------------------------------------------------S------SS-------S--------------
-------------------------------------------------------------S------------------
----------S---------------------------------------------------------------------
------S------------------------------S------------------------------------------
---------------------------------------S---S----------------------S-------------
S----SS----S--------------------------------------------------------------------
--------------------------------------S---------------------------------------S-
------------------------------------------S-------------------------------------
------------------------------------------------------SSS-----------------------
---------------------------------------------------------S----------------------
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-------------------------------------------------------S------------------------
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-------S-----------------S------------------------------------------------------
-----------S-----------------------------------S--S-----------------------------
------------------S---S----S--------------------------S---------------------S---
S-------------------------------S---------------------------------S-------------
------S----S--S-----------------------------------------------------------------
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--------------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S----
--------------------------S-----------------------------------------------------
-----------------------------------S-------------------------------------------S
----S-------------S------S--------------S---S--------S-----S------------------S-
--------------S-S----S-S--S-------S--S--S-S-S-S--------------S-------------S----
----------S-S----S----------------S--------S----S--S---SS-------------S---S--SSS
SSSSSSSSSSSSSS--------S----S----S-----------S----S------------------------------
-------------------S---------S---------S------
>forward_844
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-------------------------AACGCCTATCCAACACCCG------------------------------------
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>reverse_2525
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--------------------------------------------AAACTGAGCCGACACGTCAT----------------
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