Multiple sequence alignment - TraesCS4D01G079400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G079400 chr4D 100.000 2955 0 0 974 3928 53496177 53493223 0.000000e+00 5457.0
1 TraesCS4D01G079400 chr4D 100.000 536 0 0 1 536 53497150 53496615 0.000000e+00 990.0
2 TraesCS4D01G079400 chr4D 97.345 113 3 0 3816 3928 53484515 53484403 4.010000e-45 193.0
3 TraesCS4D01G079400 chr4D 97.345 113 3 0 3816 3928 261264820 261264708 4.010000e-45 193.0
4 TraesCS4D01G079400 chr4D 92.366 131 8 2 3800 3928 313483937 313484067 6.700000e-43 185.0
5 TraesCS4D01G079400 chr4D 91.837 98 8 0 1 98 23220333 23220430 1.900000e-28 137.0
6 TraesCS4D01G079400 chr4D 87.356 87 9 2 13 98 374109515 374109600 8.980000e-17 99.0
7 TraesCS4D01G079400 chr4A 92.257 2867 115 54 974 3815 543608525 543611309 0.000000e+00 3965.0
8 TraesCS4D01G079400 chr4A 91.342 231 12 4 259 489 543607989 543608211 3.810000e-80 309.0
9 TraesCS4D01G079400 chr4A 87.912 91 8 3 13 101 605541958 605542047 1.930000e-18 104.0
10 TraesCS4D01G079400 chr4A 98.182 55 1 0 482 536 543608436 543608490 3.230000e-16 97.1
11 TraesCS4D01G079400 chr4B 94.705 2304 70 18 974 3271 78487202 78484945 0.000000e+00 3531.0
12 TraesCS4D01G079400 chr4B 87.059 425 39 5 3384 3804 78484877 78484465 2.140000e-127 466.0
13 TraesCS4D01G079400 chr4B 91.519 283 12 5 255 534 78487515 78487242 2.860000e-101 379.0
14 TraesCS4D01G079400 chr2D 97.541 122 3 0 3807 3928 158937226 158937105 3.980000e-50 209.0
15 TraesCS4D01G079400 chr2D 97.368 114 3 0 3815 3928 355333012 355333125 1.110000e-45 195.0
16 TraesCS4D01G079400 chr2D 98.198 111 2 0 3816 3926 495140707 495140597 1.110000e-45 195.0
17 TraesCS4D01G079400 chr2D 94.286 70 4 0 27 96 632075524 632075593 1.490000e-19 108.0
18 TraesCS4D01G079400 chr7D 97.345 113 3 0 3816 3928 576361458 576361570 4.010000e-45 193.0
19 TraesCS4D01G079400 chr7D 95.726 117 5 0 3810 3926 364882401 364882517 5.180000e-44 189.0
20 TraesCS4D01G079400 chr7D 74.912 283 47 21 3357 3633 561020809 561020545 1.490000e-19 108.0
21 TraesCS4D01G079400 chr3B 79.100 311 42 10 3379 3668 678510802 678510494 4.010000e-45 193.0
22 TraesCS4D01G079400 chr6D 95.041 121 3 3 3809 3928 60242297 60242415 1.860000e-43 187.0
23 TraesCS4D01G079400 chr7A 76.230 244 44 11 3534 3768 21347473 21347711 2.480000e-22 117.0
24 TraesCS4D01G079400 chr2A 89.362 94 8 2 4 96 302242022 302242114 2.480000e-22 117.0
25 TraesCS4D01G079400 chr3D 88.421 95 9 2 5 98 562110036 562109943 3.210000e-21 113.0
26 TraesCS4D01G079400 chr3D 92.754 69 5 0 28 96 579738415 579738347 2.500000e-17 100.0
27 TraesCS4D01G079400 chr5D 88.172 93 9 2 4 96 199075890 199075800 4.150000e-20 110.0
28 TraesCS4D01G079400 chr1D 89.286 84 7 2 14 96 364514276 364514194 1.930000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G079400 chr4D 53493223 53497150 3927 True 3223.500000 5457 100.000000 1 3928 2 chr4D.!!$R3 3927
1 TraesCS4D01G079400 chr4A 543607989 543611309 3320 False 1457.033333 3965 93.927000 259 3815 3 chr4A.!!$F2 3556
2 TraesCS4D01G079400 chr4B 78484465 78487515 3050 True 1458.666667 3531 91.094333 255 3804 3 chr4B.!!$R1 3549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.028110 GCGATTTTTAGCGCCTCCTG 59.972 55.0 2.29 0.0 46.93 3.86 F
95 96 0.392193 CCAACGGCTGAAGATGCTCT 60.392 55.0 0.00 0.0 0.00 4.09 F
109 110 0.525761 TGCTCTTACATTTTGGCCGC 59.474 50.0 0.00 0.0 0.00 6.53 F
1604 1847 0.872388 GTTTCTTGAACCACGCGGAT 59.128 50.0 12.47 0.0 35.59 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 1453 0.107606 CTCCTCGTCTTCCTCCTCGA 60.108 60.000 0.00 0.0 0.00 4.04 R
1410 1651 0.329261 CAGGGGCTCTGTTCCATCAA 59.671 55.000 6.11 0.0 38.64 2.57 R
1873 2119 1.518774 GTTGAATCGCCGGACCCTA 59.481 57.895 5.05 0.0 0.00 3.53 R
3458 3742 0.388294 GGTAGACACCATCCCTACGC 59.612 60.000 0.00 0.0 45.04 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.759205 GCCGGAAAGCCCCCACAT 62.759 66.667 5.05 0.00 0.00 3.21
22 23 2.440247 CCGGAAAGCCCCCACATC 60.440 66.667 0.00 0.00 0.00 3.06
23 24 2.824041 CGGAAAGCCCCCACATCG 60.824 66.667 0.00 0.00 0.00 3.84
24 25 2.674754 GGAAAGCCCCCACATCGA 59.325 61.111 0.00 0.00 0.00 3.59
25 26 1.227383 GGAAAGCCCCCACATCGAT 59.773 57.895 0.00 0.00 0.00 3.59
26 27 0.395724 GGAAAGCCCCCACATCGATT 60.396 55.000 0.00 0.00 0.00 3.34
27 28 1.474330 GAAAGCCCCCACATCGATTT 58.526 50.000 0.00 0.00 0.00 2.17
28 29 1.824852 GAAAGCCCCCACATCGATTTT 59.175 47.619 0.00 0.00 0.00 1.82
29 30 2.818751 AAGCCCCCACATCGATTTTA 57.181 45.000 0.00 0.00 0.00 1.52
30 31 2.348411 AGCCCCCACATCGATTTTAG 57.652 50.000 0.00 0.00 0.00 1.85
31 32 0.668535 GCCCCCACATCGATTTTAGC 59.331 55.000 0.00 0.00 0.00 3.09
32 33 0.944386 CCCCCACATCGATTTTAGCG 59.056 55.000 0.00 0.00 0.00 4.26
33 34 1.663695 CCCCACATCGATTTTAGCGT 58.336 50.000 0.00 0.00 0.00 5.07
34 35 1.597663 CCCCACATCGATTTTAGCGTC 59.402 52.381 0.00 0.00 0.00 5.19
35 36 1.257936 CCCACATCGATTTTAGCGTCG 59.742 52.381 0.00 0.00 39.11 5.12
36 37 1.257936 CCACATCGATTTTAGCGTCGG 59.742 52.381 0.00 0.00 38.34 4.79
37 38 1.924524 CACATCGATTTTAGCGTCGGT 59.075 47.619 1.19 1.19 38.34 4.69
38 39 3.110358 CACATCGATTTTAGCGTCGGTA 58.890 45.455 0.00 0.00 38.34 4.02
39 40 3.548668 CACATCGATTTTAGCGTCGGTAA 59.451 43.478 12.62 12.62 38.34 2.85
40 41 3.795101 ACATCGATTTTAGCGTCGGTAAG 59.205 43.478 15.68 6.02 38.34 2.34
41 42 3.492421 TCGATTTTAGCGTCGGTAAGT 57.508 42.857 15.68 9.74 38.34 2.24
42 43 3.429085 TCGATTTTAGCGTCGGTAAGTC 58.571 45.455 15.68 15.73 38.34 3.01
43 44 2.533129 CGATTTTAGCGTCGGTAAGTCC 59.467 50.000 15.68 8.68 34.39 3.85
44 45 2.368655 TTTTAGCGTCGGTAAGTCCC 57.631 50.000 15.68 0.00 0.00 4.46
45 46 0.532115 TTTAGCGTCGGTAAGTCCCC 59.468 55.000 15.68 0.00 0.00 4.81
46 47 0.611618 TTAGCGTCGGTAAGTCCCCA 60.612 55.000 12.62 0.00 0.00 4.96
47 48 1.033746 TAGCGTCGGTAAGTCCCCAG 61.034 60.000 0.78 0.00 0.00 4.45
48 49 2.890371 CGTCGGTAAGTCCCCAGG 59.110 66.667 0.00 0.00 0.00 4.45
49 50 2.582978 GTCGGTAAGTCCCCAGGC 59.417 66.667 0.00 0.00 0.00 4.85
50 51 3.072468 TCGGTAAGTCCCCAGGCG 61.072 66.667 0.00 0.00 0.00 5.52
51 52 4.157120 CGGTAAGTCCCCAGGCGG 62.157 72.222 0.00 0.00 0.00 6.13
52 53 4.484872 GGTAAGTCCCCAGGCGGC 62.485 72.222 0.00 0.00 0.00 6.53
53 54 4.832608 GTAAGTCCCCAGGCGGCG 62.833 72.222 0.51 0.51 0.00 6.46
57 58 4.796495 GTCCCCAGGCGGCGATTT 62.796 66.667 12.98 0.00 0.00 2.17
58 59 4.041762 TCCCCAGGCGGCGATTTT 62.042 61.111 12.98 0.00 0.00 1.82
59 60 3.068064 CCCCAGGCGGCGATTTTT 61.068 61.111 12.98 0.00 0.00 1.94
60 61 1.751162 CCCCAGGCGGCGATTTTTA 60.751 57.895 12.98 0.00 0.00 1.52
61 62 1.724582 CCCCAGGCGGCGATTTTTAG 61.725 60.000 12.98 0.00 0.00 1.85
62 63 1.064134 CCAGGCGGCGATTTTTAGC 59.936 57.895 12.98 0.00 0.00 3.09
63 64 1.297598 CAGGCGGCGATTTTTAGCG 60.298 57.895 12.98 0.00 0.00 4.26
68 69 4.998294 GCGATTTTTAGCGCCTCC 57.002 55.556 2.29 0.00 46.93 4.30
69 70 2.394604 GCGATTTTTAGCGCCTCCT 58.605 52.632 2.29 0.00 46.93 3.69
70 71 0.028110 GCGATTTTTAGCGCCTCCTG 59.972 55.000 2.29 0.00 46.93 3.86
71 72 0.657840 CGATTTTTAGCGCCTCCTGG 59.342 55.000 2.29 0.00 0.00 4.45
72 73 1.025041 GATTTTTAGCGCCTCCTGGG 58.975 55.000 2.29 0.00 38.36 4.45
92 93 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91
93 94 2.042831 GCCAACGGCTGAAGATGCT 61.043 57.895 0.00 0.00 46.69 3.79
94 95 1.986575 GCCAACGGCTGAAGATGCTC 61.987 60.000 0.00 0.00 46.69 4.26
95 96 0.392193 CCAACGGCTGAAGATGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
96 97 1.446907 CAACGGCTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
97 98 2.621338 CAACGGCTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
98 99 2.301577 ACGGCTGAAGATGCTCTTAC 57.698 50.000 0.00 0.00 36.73 2.34
99 100 1.550524 ACGGCTGAAGATGCTCTTACA 59.449 47.619 0.00 0.00 36.73 2.41
100 101 2.169352 ACGGCTGAAGATGCTCTTACAT 59.831 45.455 0.00 0.00 36.73 2.29
101 102 3.201290 CGGCTGAAGATGCTCTTACATT 58.799 45.455 0.00 0.00 36.73 2.71
102 103 3.624861 CGGCTGAAGATGCTCTTACATTT 59.375 43.478 0.00 0.00 36.73 2.32
103 104 4.095483 CGGCTGAAGATGCTCTTACATTTT 59.905 41.667 0.00 0.00 36.73 1.82
104 105 5.338365 GGCTGAAGATGCTCTTACATTTTG 58.662 41.667 0.00 0.00 36.73 2.44
105 106 5.338365 GCTGAAGATGCTCTTACATTTTGG 58.662 41.667 0.00 0.00 36.73 3.28
106 107 5.314923 TGAAGATGCTCTTACATTTTGGC 57.685 39.130 0.00 0.00 36.73 4.52
107 108 4.158394 TGAAGATGCTCTTACATTTTGGCC 59.842 41.667 0.00 0.00 36.73 5.36
108 109 2.684881 AGATGCTCTTACATTTTGGCCG 59.315 45.455 0.00 0.00 0.00 6.13
109 110 0.525761 TGCTCTTACATTTTGGCCGC 59.474 50.000 0.00 0.00 0.00 6.53
110 111 0.525761 GCTCTTACATTTTGGCCGCA 59.474 50.000 0.00 0.00 0.00 5.69
111 112 1.732405 GCTCTTACATTTTGGCCGCAC 60.732 52.381 0.00 0.00 0.00 5.34
112 113 1.539388 CTCTTACATTTTGGCCGCACA 59.461 47.619 0.00 0.00 0.00 4.57
113 114 1.539388 TCTTACATTTTGGCCGCACAG 59.461 47.619 0.00 0.00 0.00 3.66
114 115 1.269448 CTTACATTTTGGCCGCACAGT 59.731 47.619 0.00 0.00 0.00 3.55
115 116 2.186532 TACATTTTGGCCGCACAGTA 57.813 45.000 0.00 0.00 0.00 2.74
116 117 1.544724 ACATTTTGGCCGCACAGTAT 58.455 45.000 0.00 0.00 0.00 2.12
117 118 2.717390 ACATTTTGGCCGCACAGTATA 58.283 42.857 0.00 0.00 0.00 1.47
118 119 3.287222 ACATTTTGGCCGCACAGTATAT 58.713 40.909 0.00 0.00 0.00 0.86
119 120 4.456535 ACATTTTGGCCGCACAGTATATA 58.543 39.130 0.00 0.00 0.00 0.86
120 121 4.884744 ACATTTTGGCCGCACAGTATATAA 59.115 37.500 0.00 0.00 0.00 0.98
121 122 5.358442 ACATTTTGGCCGCACAGTATATAAA 59.642 36.000 0.00 0.00 0.00 1.40
122 123 4.886247 TTTGGCCGCACAGTATATAAAC 57.114 40.909 0.00 0.00 0.00 2.01
123 124 2.841215 TGGCCGCACAGTATATAAACC 58.159 47.619 0.00 0.00 0.00 3.27
124 125 2.170817 TGGCCGCACAGTATATAAACCA 59.829 45.455 0.00 0.00 0.00 3.67
125 126 3.207778 GGCCGCACAGTATATAAACCAA 58.792 45.455 0.00 0.00 0.00 3.67
126 127 3.628487 GGCCGCACAGTATATAAACCAAA 59.372 43.478 0.00 0.00 0.00 3.28
127 128 4.261031 GGCCGCACAGTATATAAACCAAAG 60.261 45.833 0.00 0.00 0.00 2.77
128 129 4.261031 GCCGCACAGTATATAAACCAAAGG 60.261 45.833 0.00 0.00 0.00 3.11
129 130 5.120399 CCGCACAGTATATAAACCAAAGGA 58.880 41.667 0.00 0.00 0.00 3.36
130 131 5.587043 CCGCACAGTATATAAACCAAAGGAA 59.413 40.000 0.00 0.00 0.00 3.36
131 132 6.094325 CCGCACAGTATATAAACCAAAGGAAA 59.906 38.462 0.00 0.00 0.00 3.13
132 133 7.362229 CCGCACAGTATATAAACCAAAGGAAAA 60.362 37.037 0.00 0.00 0.00 2.29
133 134 7.696453 CGCACAGTATATAAACCAAAGGAAAAG 59.304 37.037 0.00 0.00 0.00 2.27
134 135 7.973944 GCACAGTATATAAACCAAAGGAAAAGG 59.026 37.037 0.00 0.00 0.00 3.11
135 136 7.973944 CACAGTATATAAACCAAAGGAAAAGGC 59.026 37.037 0.00 0.00 0.00 4.35
136 137 7.123697 ACAGTATATAAACCAAAGGAAAAGGCC 59.876 37.037 0.00 0.00 0.00 5.19
137 138 5.950544 ATATAAACCAAAGGAAAAGGCCC 57.049 39.130 0.00 0.00 0.00 5.80
138 139 1.886422 AAACCAAAGGAAAAGGCCCA 58.114 45.000 0.00 0.00 0.00 5.36
139 140 2.116869 AACCAAAGGAAAAGGCCCAT 57.883 45.000 0.00 0.00 0.00 4.00
140 141 1.351076 ACCAAAGGAAAAGGCCCATG 58.649 50.000 0.00 0.00 0.00 3.66
141 142 1.351076 CCAAAGGAAAAGGCCCATGT 58.649 50.000 0.00 0.00 0.00 3.21
142 143 2.158234 ACCAAAGGAAAAGGCCCATGTA 60.158 45.455 0.00 0.00 0.00 2.29
143 144 2.497273 CCAAAGGAAAAGGCCCATGTAG 59.503 50.000 0.00 0.00 0.00 2.74
144 145 3.165071 CAAAGGAAAAGGCCCATGTAGT 58.835 45.455 0.00 0.00 0.00 2.73
145 146 2.514458 AGGAAAAGGCCCATGTAGTG 57.486 50.000 0.00 0.00 0.00 2.74
146 147 1.992557 AGGAAAAGGCCCATGTAGTGA 59.007 47.619 0.00 0.00 0.00 3.41
147 148 2.378547 AGGAAAAGGCCCATGTAGTGAA 59.621 45.455 0.00 0.00 0.00 3.18
148 149 3.011708 AGGAAAAGGCCCATGTAGTGAAT 59.988 43.478 0.00 0.00 0.00 2.57
149 150 3.381590 GGAAAAGGCCCATGTAGTGAATC 59.618 47.826 0.00 0.00 0.00 2.52
150 151 3.737559 AAAGGCCCATGTAGTGAATCA 57.262 42.857 0.00 0.00 0.00 2.57
151 152 3.737559 AAGGCCCATGTAGTGAATCAA 57.262 42.857 0.00 0.00 0.00 2.57
152 153 3.959495 AGGCCCATGTAGTGAATCAAT 57.041 42.857 0.00 0.00 0.00 2.57
153 154 4.255510 AGGCCCATGTAGTGAATCAATT 57.744 40.909 0.00 0.00 0.00 2.32
154 155 4.613437 AGGCCCATGTAGTGAATCAATTT 58.387 39.130 0.00 0.00 0.00 1.82
155 156 4.403432 AGGCCCATGTAGTGAATCAATTTG 59.597 41.667 0.00 0.00 0.00 2.32
156 157 4.160252 GGCCCATGTAGTGAATCAATTTGT 59.840 41.667 0.00 0.00 0.00 2.83
157 158 5.343249 GCCCATGTAGTGAATCAATTTGTC 58.657 41.667 0.00 0.00 0.00 3.18
158 159 5.126061 GCCCATGTAGTGAATCAATTTGTCT 59.874 40.000 0.00 0.00 0.00 3.41
159 160 6.350445 GCCCATGTAGTGAATCAATTTGTCTT 60.350 38.462 0.00 0.00 0.00 3.01
160 161 7.605449 CCCATGTAGTGAATCAATTTGTCTTT 58.395 34.615 0.00 0.00 0.00 2.52
161 162 8.090214 CCCATGTAGTGAATCAATTTGTCTTTT 58.910 33.333 0.00 0.00 0.00 2.27
162 163 9.132521 CCATGTAGTGAATCAATTTGTCTTTTC 57.867 33.333 0.00 0.00 0.00 2.29
163 164 9.681692 CATGTAGTGAATCAATTTGTCTTTTCA 57.318 29.630 0.00 0.77 0.00 2.69
164 165 9.683069 ATGTAGTGAATCAATTTGTCTTTTCAC 57.317 29.630 18.46 18.46 41.88 3.18
166 167 9.736023 GTAGTGAATCAATTTGTCTTTTCACTT 57.264 29.630 25.62 17.52 46.62 3.16
170 171 9.695526 TGAATCAATTTGTCTTTTCACTTATGG 57.304 29.630 0.00 0.00 0.00 2.74
171 172 9.143631 GAATCAATTTGTCTTTTCACTTATGGG 57.856 33.333 0.00 0.00 0.00 4.00
172 173 7.595819 TCAATTTGTCTTTTCACTTATGGGT 57.404 32.000 0.00 0.00 0.00 4.51
173 174 7.432869 TCAATTTGTCTTTTCACTTATGGGTG 58.567 34.615 0.00 0.00 38.44 4.61
174 175 7.286546 TCAATTTGTCTTTTCACTTATGGGTGA 59.713 33.333 0.00 0.00 43.41 4.02
175 176 6.385649 TTTGTCTTTTCACTTATGGGTGAC 57.614 37.500 2.71 0.00 44.55 3.67
176 177 5.042463 TGTCTTTTCACTTATGGGTGACA 57.958 39.130 2.71 0.00 44.55 3.58
177 178 5.630121 TGTCTTTTCACTTATGGGTGACAT 58.370 37.500 2.71 0.00 44.55 3.06
178 179 6.774673 TGTCTTTTCACTTATGGGTGACATA 58.225 36.000 2.71 0.00 44.55 2.29
179 180 6.878923 TGTCTTTTCACTTATGGGTGACATAG 59.121 38.462 2.71 2.27 44.55 2.23
180 181 6.879458 GTCTTTTCACTTATGGGTGACATAGT 59.121 38.462 2.71 0.00 44.55 2.12
181 182 8.038944 GTCTTTTCACTTATGGGTGACATAGTA 58.961 37.037 2.71 0.00 44.55 1.82
182 183 8.258007 TCTTTTCACTTATGGGTGACATAGTAG 58.742 37.037 2.71 0.00 44.55 2.57
183 184 7.727578 TTTCACTTATGGGTGACATAGTAGA 57.272 36.000 2.71 0.00 44.55 2.59
184 185 7.914427 TTCACTTATGGGTGACATAGTAGAT 57.086 36.000 2.71 0.00 44.55 1.98
185 186 9.429109 TTTCACTTATGGGTGACATAGTAGATA 57.571 33.333 2.71 0.00 44.55 1.98
186 187 9.429109 TTCACTTATGGGTGACATAGTAGATAA 57.571 33.333 2.71 0.00 44.55 1.75
187 188 9.601810 TCACTTATGGGTGACATAGTAGATAAT 57.398 33.333 0.00 0.00 42.69 1.28
192 193 8.908786 ATGGGTGACATAGTAGATAATTTGTG 57.091 34.615 0.00 0.00 38.26 3.33
193 194 7.857456 TGGGTGACATAGTAGATAATTTGTGT 58.143 34.615 0.00 0.00 0.00 3.72
194 195 7.985184 TGGGTGACATAGTAGATAATTTGTGTC 59.015 37.037 0.00 0.00 36.26 3.67
195 196 7.985184 GGGTGACATAGTAGATAATTTGTGTCA 59.015 37.037 0.00 0.00 41.44 3.58
196 197 9.378551 GGTGACATAGTAGATAATTTGTGTCAA 57.621 33.333 6.46 0.00 44.08 3.18
204 205 8.960591 AGTAGATAATTTGTGTCAATTTCAGGG 58.039 33.333 0.00 0.00 0.00 4.45
205 206 7.174107 AGATAATTTGTGTCAATTTCAGGGG 57.826 36.000 0.00 0.00 0.00 4.79
206 207 6.725834 AGATAATTTGTGTCAATTTCAGGGGT 59.274 34.615 0.00 0.00 0.00 4.95
207 208 7.893302 AGATAATTTGTGTCAATTTCAGGGGTA 59.107 33.333 0.00 0.00 0.00 3.69
208 209 6.739331 AATTTGTGTCAATTTCAGGGGTAA 57.261 33.333 0.00 0.00 0.00 2.85
209 210 6.933514 ATTTGTGTCAATTTCAGGGGTAAT 57.066 33.333 0.00 0.00 0.00 1.89
210 211 6.739331 TTTGTGTCAATTTCAGGGGTAATT 57.261 33.333 0.00 0.00 0.00 1.40
211 212 6.739331 TTGTGTCAATTTCAGGGGTAATTT 57.261 33.333 0.00 0.00 0.00 1.82
212 213 6.739331 TGTGTCAATTTCAGGGGTAATTTT 57.261 33.333 0.00 0.00 0.00 1.82
213 214 7.841282 TGTGTCAATTTCAGGGGTAATTTTA 57.159 32.000 0.00 0.00 0.00 1.52
214 215 8.251383 TGTGTCAATTTCAGGGGTAATTTTAA 57.749 30.769 0.00 0.00 0.00 1.52
215 216 8.875168 TGTGTCAATTTCAGGGGTAATTTTAAT 58.125 29.630 0.00 0.00 0.00 1.40
216 217 9.150348 GTGTCAATTTCAGGGGTAATTTTAATG 57.850 33.333 0.00 0.00 0.00 1.90
217 218 9.094578 TGTCAATTTCAGGGGTAATTTTAATGA 57.905 29.630 0.00 0.00 0.00 2.57
218 219 9.366216 GTCAATTTCAGGGGTAATTTTAATGAC 57.634 33.333 0.00 0.00 0.00 3.06
219 220 9.094578 TCAATTTCAGGGGTAATTTTAATGACA 57.905 29.630 0.00 0.00 0.00 3.58
220 221 9.889128 CAATTTCAGGGGTAATTTTAATGACAT 57.111 29.630 0.00 0.00 0.00 3.06
222 223 7.654022 TTCAGGGGTAATTTTAATGACATCC 57.346 36.000 0.00 0.00 0.00 3.51
223 224 6.736581 TCAGGGGTAATTTTAATGACATCCA 58.263 36.000 0.00 0.00 0.00 3.41
224 225 6.833416 TCAGGGGTAATTTTAATGACATCCAG 59.167 38.462 0.00 0.00 0.00 3.86
225 226 6.040842 CAGGGGTAATTTTAATGACATCCAGG 59.959 42.308 0.00 0.00 0.00 4.45
226 227 5.221441 GGGGTAATTTTAATGACATCCAGGC 60.221 44.000 0.00 0.00 0.00 4.85
227 228 5.362430 GGGTAATTTTAATGACATCCAGGCA 59.638 40.000 0.00 0.00 41.62 4.75
228 229 6.461509 GGGTAATTTTAATGACATCCAGGCAG 60.462 42.308 0.00 0.00 39.86 4.85
229 230 6.321181 GGTAATTTTAATGACATCCAGGCAGA 59.679 38.462 0.00 0.00 39.86 4.26
230 231 6.855763 AATTTTAATGACATCCAGGCAGAA 57.144 33.333 0.00 0.00 39.86 3.02
231 232 6.855763 ATTTTAATGACATCCAGGCAGAAA 57.144 33.333 0.00 0.00 39.86 2.52
232 233 5.643379 TTTAATGACATCCAGGCAGAAAC 57.357 39.130 0.00 0.00 39.86 2.78
233 234 2.885135 ATGACATCCAGGCAGAAACA 57.115 45.000 0.00 0.00 39.86 2.83
234 235 2.655090 TGACATCCAGGCAGAAACAA 57.345 45.000 0.00 0.00 0.00 2.83
235 236 3.159213 TGACATCCAGGCAGAAACAAT 57.841 42.857 0.00 0.00 0.00 2.71
236 237 4.299586 TGACATCCAGGCAGAAACAATA 57.700 40.909 0.00 0.00 0.00 1.90
237 238 4.264253 TGACATCCAGGCAGAAACAATAG 58.736 43.478 0.00 0.00 0.00 1.73
238 239 3.019564 ACATCCAGGCAGAAACAATAGC 58.980 45.455 0.00 0.00 0.00 2.97
242 243 3.596362 GGCAGAAACAATAGCCCCT 57.404 52.632 0.00 0.00 41.25 4.79
243 244 1.852633 GGCAGAAACAATAGCCCCTT 58.147 50.000 0.00 0.00 41.25 3.95
244 245 2.179427 GGCAGAAACAATAGCCCCTTT 58.821 47.619 0.00 0.00 41.25 3.11
245 246 3.361786 GGCAGAAACAATAGCCCCTTTA 58.638 45.455 0.00 0.00 41.25 1.85
246 247 3.960755 GGCAGAAACAATAGCCCCTTTAT 59.039 43.478 0.00 0.00 41.25 1.40
247 248 4.405680 GGCAGAAACAATAGCCCCTTTATT 59.594 41.667 0.00 0.00 41.25 1.40
248 249 5.596772 GGCAGAAACAATAGCCCCTTTATTA 59.403 40.000 0.00 0.00 41.25 0.98
249 250 6.267699 GGCAGAAACAATAGCCCCTTTATTAT 59.732 38.462 0.00 0.00 41.25 1.28
250 251 7.202001 GGCAGAAACAATAGCCCCTTTATTATT 60.202 37.037 0.00 0.00 41.25 1.40
251 252 8.856103 GCAGAAACAATAGCCCCTTTATTATTA 58.144 33.333 0.00 0.00 0.00 0.98
253 254 9.078990 AGAAACAATAGCCCCTTTATTATTAGC 57.921 33.333 0.00 0.00 0.00 3.09
254 255 9.078990 GAAACAATAGCCCCTTTATTATTAGCT 57.921 33.333 0.00 0.00 0.00 3.32
255 256 8.409358 AACAATAGCCCCTTTATTATTAGCTG 57.591 34.615 0.00 0.00 0.00 4.24
256 257 7.755618 ACAATAGCCCCTTTATTATTAGCTGA 58.244 34.615 0.00 0.00 0.00 4.26
257 258 7.885399 ACAATAGCCCCTTTATTATTAGCTGAG 59.115 37.037 0.00 0.00 0.00 3.35
263 264 7.448469 GCCCCTTTATTATTAGCTGAGATTTCA 59.552 37.037 0.00 0.00 0.00 2.69
297 298 2.294233 GGTTTTGCAGCACTGAATCTGA 59.706 45.455 0.00 0.00 32.26 3.27
298 299 3.243501 GGTTTTGCAGCACTGAATCTGAA 60.244 43.478 0.00 0.00 32.26 3.02
299 300 4.553323 GTTTTGCAGCACTGAATCTGAAT 58.447 39.130 0.00 0.00 32.26 2.57
300 301 4.430137 TTTGCAGCACTGAATCTGAATC 57.570 40.909 0.00 0.00 32.26 2.52
301 302 3.062122 TGCAGCACTGAATCTGAATCA 57.938 42.857 0.81 0.00 32.26 2.57
323 324 1.125711 ACCTACCGGGAAAGTGCAGT 61.126 55.000 6.32 0.00 38.76 4.40
367 371 6.823182 TGAATTTGCTCGAATCTTGAGGAATA 59.177 34.615 0.00 0.00 42.27 1.75
381 385 6.881065 TCTTGAGGAATACATCTTGACCAAAG 59.119 38.462 0.00 0.00 37.22 2.77
992 1229 2.203538 GCCTACCCCGTCCGGATA 60.204 66.667 7.81 0.00 37.50 2.59
996 1233 1.612726 CCTACCCCGTCCGGATACTAG 60.613 61.905 7.81 2.65 37.50 2.57
1364 1601 1.210478 CGGTGGATCCTTGAGGTGAAT 59.790 52.381 14.23 0.00 36.34 2.57
1405 1646 8.887717 GTCTATATATCTGCATCCATTGGTTTC 58.112 37.037 1.86 0.00 0.00 2.78
1410 1651 4.346730 TCTGCATCCATTGGTTTCTTGAT 58.653 39.130 1.86 0.00 0.00 2.57
1604 1847 0.872388 GTTTCTTGAACCACGCGGAT 59.128 50.000 12.47 0.00 35.59 4.18
1605 1848 1.136057 GTTTCTTGAACCACGCGGATC 60.136 52.381 12.47 3.23 34.69 3.36
1606 1849 1.011968 TTCTTGAACCACGCGGATCG 61.012 55.000 12.47 0.00 45.38 3.69
1607 1850 1.445410 CTTGAACCACGCGGATCGA 60.445 57.895 12.47 1.71 41.67 3.59
1608 1851 1.683790 CTTGAACCACGCGGATCGAC 61.684 60.000 12.47 0.00 41.67 4.20
1873 2119 2.695597 CTCCCCTGCCTCTCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
1877 2123 1.152355 CCCTGCCTCTCCTCTAGGG 60.152 68.421 0.00 0.00 41.90 3.53
2011 2257 1.078848 ATGGACCGTGCTCTGCTTC 60.079 57.895 0.00 0.00 0.00 3.86
2135 2381 1.617018 CGAGGGAGCCACTGGAATCA 61.617 60.000 0.00 0.00 0.00 2.57
2219 2465 3.306641 CCATACTCATAGCTCCTTCCAGC 60.307 52.174 0.00 0.00 39.99 4.85
2577 2824 2.406616 CGGCCATTTTCACCCTCGG 61.407 63.158 2.24 0.00 0.00 4.63
2626 2877 0.602638 TTCTTTGATCGGCGCACTGT 60.603 50.000 10.83 0.00 0.00 3.55
2753 3004 2.188994 GCGAGCTTGATGAGGCCT 59.811 61.111 3.86 3.86 0.00 5.19
2754 3005 1.886777 GCGAGCTTGATGAGGCCTC 60.887 63.158 26.78 26.78 0.00 4.70
2755 3006 1.821936 CGAGCTTGATGAGGCCTCT 59.178 57.895 32.28 18.41 0.00 3.69
2856 3107 1.452108 GGATTCCACTTCCCGGCAG 60.452 63.158 0.00 0.00 0.00 4.85
2858 3109 3.645268 ATTCCACTTCCCGGCAGGC 62.645 63.158 0.00 0.00 35.76 4.85
2944 3195 9.109246 TCTGAATTCATATGGAGGATGTAGAAT 57.891 33.333 8.96 0.00 0.00 2.40
2945 3196 9.163899 CTGAATTCATATGGAGGATGTAGAATG 57.836 37.037 8.96 0.00 0.00 2.67
2946 3197 8.105197 TGAATTCATATGGAGGATGTAGAATGG 58.895 37.037 3.38 0.00 0.00 3.16
2954 3205 3.709653 GAGGATGTAGAATGGTGGTGGTA 59.290 47.826 0.00 0.00 0.00 3.25
3247 3508 1.200020 CTGTTCGTTGGAAAGATGGCC 59.800 52.381 0.00 0.00 33.05 5.36
3248 3509 1.202879 TGTTCGTTGGAAAGATGGCCT 60.203 47.619 3.32 0.00 33.05 5.19
3269 3530 5.601662 CCTGTACGAGAATAATCCACACAT 58.398 41.667 0.00 0.00 0.00 3.21
3270 3531 5.463392 CCTGTACGAGAATAATCCACACATG 59.537 44.000 0.00 0.00 0.00 3.21
3271 3532 4.808895 TGTACGAGAATAATCCACACATGC 59.191 41.667 0.00 0.00 0.00 4.06
3272 3533 3.872696 ACGAGAATAATCCACACATGCA 58.127 40.909 0.00 0.00 0.00 3.96
3273 3534 4.260985 ACGAGAATAATCCACACATGCAA 58.739 39.130 0.00 0.00 0.00 4.08
3274 3535 4.883585 ACGAGAATAATCCACACATGCAAT 59.116 37.500 0.00 0.00 0.00 3.56
3275 3536 5.357878 ACGAGAATAATCCACACATGCAATT 59.642 36.000 0.00 0.00 0.00 2.32
3276 3537 5.911280 CGAGAATAATCCACACATGCAATTC 59.089 40.000 0.00 0.00 0.00 2.17
3277 3538 6.238566 CGAGAATAATCCACACATGCAATTCT 60.239 38.462 0.00 0.00 35.68 2.40
3278 3539 7.414222 AGAATAATCCACACATGCAATTCTT 57.586 32.000 0.00 0.00 30.36 2.52
3279 3540 7.486647 AGAATAATCCACACATGCAATTCTTC 58.513 34.615 0.00 0.00 30.36 2.87
3280 3541 7.341256 AGAATAATCCACACATGCAATTCTTCT 59.659 33.333 0.00 0.00 30.36 2.85
3281 3542 4.978083 ATCCACACATGCAATTCTTCTC 57.022 40.909 0.00 0.00 0.00 2.87
3282 3543 4.025040 TCCACACATGCAATTCTTCTCT 57.975 40.909 0.00 0.00 0.00 3.10
3283 3544 4.005650 TCCACACATGCAATTCTTCTCTC 58.994 43.478 0.00 0.00 0.00 3.20
3284 3545 4.008330 CCACACATGCAATTCTTCTCTCT 58.992 43.478 0.00 0.00 0.00 3.10
3285 3546 4.094590 CCACACATGCAATTCTTCTCTCTC 59.905 45.833 0.00 0.00 0.00 3.20
3286 3547 4.936411 CACACATGCAATTCTTCTCTCTCT 59.064 41.667 0.00 0.00 0.00 3.10
3287 3548 5.411977 CACACATGCAATTCTTCTCTCTCTT 59.588 40.000 0.00 0.00 0.00 2.85
3298 3581 5.403246 TCTTCTCTCTCTTTGTTCGTATGC 58.597 41.667 0.00 0.00 0.00 3.14
3320 3603 4.677378 GCGTGTAGCTCTACATCTTGTATG 59.323 45.833 12.29 0.00 46.36 2.39
3322 3605 5.506483 CGTGTAGCTCTACATCTTGTATGCT 60.506 44.000 12.29 14.91 46.36 3.79
3328 3611 4.207955 TCTACATCTTGTATGCTCTCCGT 58.792 43.478 0.00 0.00 31.66 4.69
3358 3642 2.993899 GACAACAGGGTGTATCAACGAG 59.006 50.000 0.00 0.00 0.00 4.18
3359 3643 2.631062 ACAACAGGGTGTATCAACGAGA 59.369 45.455 0.00 0.00 0.00 4.04
3360 3644 3.254060 CAACAGGGTGTATCAACGAGAG 58.746 50.000 0.00 0.00 0.00 3.20
3372 3656 1.301479 ACGAGAGTGGGTTTTCGGC 60.301 57.895 0.00 0.00 46.97 5.54
3373 3657 1.004918 CGAGAGTGGGTTTTCGGCT 60.005 57.895 0.00 0.00 0.00 5.52
3374 3658 1.014564 CGAGAGTGGGTTTTCGGCTC 61.015 60.000 0.00 0.00 0.00 4.70
3375 3659 0.673956 GAGAGTGGGTTTTCGGCTCC 60.674 60.000 0.00 0.00 0.00 4.70
3376 3660 1.674651 GAGTGGGTTTTCGGCTCCC 60.675 63.158 0.00 0.00 41.41 4.30
3408 3692 1.134848 AGCCTGAGATTTCGAGCAGTC 60.135 52.381 0.00 0.00 0.00 3.51
3424 3708 2.794350 GCAGTCCAAAAACCACATTTCG 59.206 45.455 0.00 0.00 0.00 3.46
3635 3920 9.926158 ATGTATTTCATCATAAACTTTGCACAA 57.074 25.926 0.00 0.00 29.76 3.33
3640 3925 7.872163 TCATCATAAACTTTGCACAAATGTC 57.128 32.000 0.00 0.00 0.00 3.06
3667 3952 6.630203 AACATCCCTATGTACAGGTGTAAA 57.370 37.500 0.33 0.00 45.79 2.01
3807 4094 3.767131 TGGATGAACCAATAGAGACGTCA 59.233 43.478 19.50 0.00 46.75 4.35
3815 4102 3.181471 CCAATAGAGACGTCAAGGATGCT 60.181 47.826 19.50 5.55 0.00 3.79
3816 4103 3.724508 ATAGAGACGTCAAGGATGCTG 57.275 47.619 19.50 0.00 0.00 4.41
3817 4104 1.261480 AGAGACGTCAAGGATGCTGT 58.739 50.000 19.50 0.00 0.00 4.40
3818 4105 1.203523 AGAGACGTCAAGGATGCTGTC 59.796 52.381 19.50 2.03 0.00 3.51
3819 4106 0.109086 AGACGTCAAGGATGCTGTCG 60.109 55.000 19.50 0.00 0.00 4.35
3820 4107 1.078759 GACGTCAAGGATGCTGTCGG 61.079 60.000 11.55 0.00 0.00 4.79
3821 4108 1.079819 CGTCAAGGATGCTGTCGGT 60.080 57.895 0.00 0.00 0.00 4.69
3822 4109 1.354337 CGTCAAGGATGCTGTCGGTG 61.354 60.000 0.00 0.00 0.00 4.94
3823 4110 0.320771 GTCAAGGATGCTGTCGGTGT 60.321 55.000 0.00 0.00 0.00 4.16
3824 4111 0.037326 TCAAGGATGCTGTCGGTGTC 60.037 55.000 0.00 0.00 0.00 3.67
3825 4112 0.320683 CAAGGATGCTGTCGGTGTCA 60.321 55.000 0.00 0.00 0.00 3.58
3826 4113 0.396435 AAGGATGCTGTCGGTGTCAA 59.604 50.000 0.00 0.00 0.00 3.18
3827 4114 0.396435 AGGATGCTGTCGGTGTCAAA 59.604 50.000 0.00 0.00 0.00 2.69
3828 4115 1.202758 AGGATGCTGTCGGTGTCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
3829 4116 1.069227 GGATGCTGTCGGTGTCAAAAC 60.069 52.381 0.00 0.00 0.00 2.43
3830 4117 0.951558 ATGCTGTCGGTGTCAAAACC 59.048 50.000 0.00 0.00 36.82 3.27
3836 4123 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
3837 4124 2.641197 GGTGTCAAAACCGGCAGAT 58.359 52.632 0.00 0.00 0.00 2.90
3838 4125 0.521735 GGTGTCAAAACCGGCAGATC 59.478 55.000 0.00 0.00 0.00 2.75
3839 4126 1.523758 GTGTCAAAACCGGCAGATCT 58.476 50.000 0.00 0.00 0.00 2.75
3840 4127 1.464997 GTGTCAAAACCGGCAGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
3841 4128 0.721718 GTCAAAACCGGCAGATCTCG 59.278 55.000 0.00 0.00 0.00 4.04
3845 4132 0.974010 AAACCGGCAGATCTCGGGTA 60.974 55.000 22.66 0.00 46.82 3.69
3846 4133 1.392710 AACCGGCAGATCTCGGGTAG 61.393 60.000 22.66 0.00 45.54 3.18
3847 4134 2.565645 CCGGCAGATCTCGGGTAGG 61.566 68.421 13.71 0.00 42.32 3.18
3848 4135 2.565645 CGGCAGATCTCGGGTAGGG 61.566 68.421 0.00 0.00 0.00 3.53
3849 4136 2.210711 GGCAGATCTCGGGTAGGGG 61.211 68.421 0.00 0.00 0.00 4.79
3850 4137 2.210711 GCAGATCTCGGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
3851 4138 1.233369 CAGATCTCGGGTAGGGGGT 59.767 63.158 0.00 0.00 0.00 4.95
3852 4139 0.828343 CAGATCTCGGGTAGGGGGTC 60.828 65.000 0.00 0.00 0.00 4.46
3853 4140 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
3854 4141 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
3863 4150 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
3865 4152 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
3866 4153 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
3867 4154 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
3868 4155 2.022129 GTCCCGAACTGTGCGTCTG 61.022 63.158 7.51 0.00 0.00 3.51
3869 4156 2.197605 TCCCGAACTGTGCGTCTGA 61.198 57.895 7.51 0.00 0.00 3.27
3870 4157 1.734477 CCCGAACTGTGCGTCTGAG 60.734 63.158 7.51 0.00 0.00 3.35
3871 4158 1.734477 CCGAACTGTGCGTCTGAGG 60.734 63.158 7.51 0.00 0.00 3.86
3872 4159 1.285950 CGAACTGTGCGTCTGAGGA 59.714 57.895 0.00 0.00 0.00 3.71
3873 4160 0.109086 CGAACTGTGCGTCTGAGGAT 60.109 55.000 0.00 0.00 0.00 3.24
3874 4161 1.634702 GAACTGTGCGTCTGAGGATC 58.365 55.000 0.82 0.00 0.00 3.36
3875 4162 0.109086 AACTGTGCGTCTGAGGATCG 60.109 55.000 0.82 0.00 38.61 3.69
3876 4163 0.960861 ACTGTGCGTCTGAGGATCGA 60.961 55.000 0.82 0.00 38.61 3.59
3877 4164 0.171231 CTGTGCGTCTGAGGATCGAA 59.829 55.000 0.82 0.00 38.61 3.71
3878 4165 0.171231 TGTGCGTCTGAGGATCGAAG 59.829 55.000 0.82 0.00 38.61 3.79
3879 4166 0.526524 GTGCGTCTGAGGATCGAAGG 60.527 60.000 0.82 0.00 38.61 3.46
3880 4167 0.965866 TGCGTCTGAGGATCGAAGGT 60.966 55.000 0.82 0.00 38.61 3.50
3881 4168 1.022735 GCGTCTGAGGATCGAAGGTA 58.977 55.000 0.82 0.00 38.61 3.08
3882 4169 1.404391 GCGTCTGAGGATCGAAGGTAA 59.596 52.381 0.82 0.00 38.61 2.85
3883 4170 2.795331 GCGTCTGAGGATCGAAGGTAAC 60.795 54.545 0.82 0.00 38.61 2.50
3884 4171 2.422479 CGTCTGAGGATCGAAGGTAACA 59.578 50.000 0.00 0.00 38.61 2.41
3885 4172 3.487711 CGTCTGAGGATCGAAGGTAACAG 60.488 52.174 0.00 0.00 38.61 3.16
3886 4173 3.024547 TCTGAGGATCGAAGGTAACAGG 58.975 50.000 0.00 0.00 38.61 4.00
3887 4174 3.024547 CTGAGGATCGAAGGTAACAGGA 58.975 50.000 0.00 0.00 38.61 3.86
3888 4175 3.024547 TGAGGATCGAAGGTAACAGGAG 58.975 50.000 0.00 0.00 38.61 3.69
3889 4176 3.288964 GAGGATCGAAGGTAACAGGAGA 58.711 50.000 0.00 0.00 41.41 3.71
3890 4177 3.025262 AGGATCGAAGGTAACAGGAGAC 58.975 50.000 0.00 0.00 41.41 3.36
3891 4178 2.758979 GGATCGAAGGTAACAGGAGACA 59.241 50.000 0.00 0.00 41.41 3.41
3892 4179 3.181485 GGATCGAAGGTAACAGGAGACAG 60.181 52.174 0.00 0.00 41.41 3.51
3893 4180 2.168496 TCGAAGGTAACAGGAGACAGG 58.832 52.381 0.00 0.00 41.41 4.00
3894 4181 1.204941 CGAAGGTAACAGGAGACAGGG 59.795 57.143 0.00 0.00 41.41 4.45
3895 4182 2.537143 GAAGGTAACAGGAGACAGGGA 58.463 52.381 0.00 0.00 41.41 4.20
3896 4183 1.939980 AGGTAACAGGAGACAGGGAC 58.060 55.000 0.00 0.00 41.41 4.46
3897 4184 1.149288 AGGTAACAGGAGACAGGGACA 59.851 52.381 0.00 0.00 41.41 4.02
3898 4185 1.275573 GGTAACAGGAGACAGGGACAC 59.724 57.143 0.00 0.00 0.00 3.67
3899 4186 1.968493 GTAACAGGAGACAGGGACACA 59.032 52.381 0.00 0.00 0.00 3.72
3900 4187 1.507140 AACAGGAGACAGGGACACAA 58.493 50.000 0.00 0.00 0.00 3.33
3901 4188 1.734655 ACAGGAGACAGGGACACAAT 58.265 50.000 0.00 0.00 0.00 2.71
3902 4189 2.902608 ACAGGAGACAGGGACACAATA 58.097 47.619 0.00 0.00 0.00 1.90
3903 4190 3.454858 ACAGGAGACAGGGACACAATAT 58.545 45.455 0.00 0.00 0.00 1.28
3904 4191 3.846588 ACAGGAGACAGGGACACAATATT 59.153 43.478 0.00 0.00 0.00 1.28
3905 4192 4.289672 ACAGGAGACAGGGACACAATATTT 59.710 41.667 0.00 0.00 0.00 1.40
3906 4193 5.487488 ACAGGAGACAGGGACACAATATTTA 59.513 40.000 0.00 0.00 0.00 1.40
3907 4194 5.817816 CAGGAGACAGGGACACAATATTTAC 59.182 44.000 0.00 0.00 0.00 2.01
3908 4195 5.104485 AGGAGACAGGGACACAATATTTACC 60.104 44.000 0.00 0.00 0.00 2.85
3909 4196 5.112129 AGACAGGGACACAATATTTACCC 57.888 43.478 0.00 0.00 37.79 3.69
3910 4197 4.538490 AGACAGGGACACAATATTTACCCA 59.462 41.667 14.42 0.00 39.73 4.51
3911 4198 4.855340 ACAGGGACACAATATTTACCCAG 58.145 43.478 14.42 10.60 39.73 4.45
3912 4199 4.207165 CAGGGACACAATATTTACCCAGG 58.793 47.826 14.42 6.25 39.73 4.45
3913 4200 3.856206 AGGGACACAATATTTACCCAGGT 59.144 43.478 14.42 0.00 39.73 4.00
3914 4201 4.293901 AGGGACACAATATTTACCCAGGTT 59.706 41.667 14.42 0.00 39.73 3.50
3915 4202 4.643334 GGGACACAATATTTACCCAGGTTC 59.357 45.833 0.00 0.00 37.50 3.62
3916 4203 4.334481 GGACACAATATTTACCCAGGTTCG 59.666 45.833 0.00 0.00 0.00 3.95
3917 4204 4.266714 ACACAATATTTACCCAGGTTCGG 58.733 43.478 0.00 0.00 0.00 4.30
3924 4211 3.322466 CCCAGGTTCGGGCACTCT 61.322 66.667 0.00 0.00 40.07 3.24
3925 4212 2.750350 CCAGGTTCGGGCACTCTT 59.250 61.111 0.00 0.00 0.00 2.85
3926 4213 1.672356 CCAGGTTCGGGCACTCTTG 60.672 63.158 0.00 0.00 0.00 3.02
3927 4214 1.371183 CAGGTTCGGGCACTCTTGA 59.629 57.895 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.759205 ATGTGGGGGCTTTCCGGC 62.759 66.667 0.00 0.00 36.01 6.13
5 6 2.440247 GATGTGGGGGCTTTCCGG 60.440 66.667 0.00 0.00 36.01 5.14
6 7 2.608970 ATCGATGTGGGGGCTTTCCG 62.609 60.000 0.00 0.00 36.01 4.30
7 8 0.395724 AATCGATGTGGGGGCTTTCC 60.396 55.000 0.00 0.00 0.00 3.13
8 9 1.474330 AAATCGATGTGGGGGCTTTC 58.526 50.000 0.00 0.00 0.00 2.62
9 10 1.937191 AAAATCGATGTGGGGGCTTT 58.063 45.000 0.00 0.00 0.00 3.51
10 11 2.654863 CTAAAATCGATGTGGGGGCTT 58.345 47.619 0.00 0.00 0.00 4.35
11 12 1.750682 GCTAAAATCGATGTGGGGGCT 60.751 52.381 0.00 0.00 0.00 5.19
12 13 0.668535 GCTAAAATCGATGTGGGGGC 59.331 55.000 0.00 0.00 0.00 5.80
13 14 0.944386 CGCTAAAATCGATGTGGGGG 59.056 55.000 0.00 0.00 0.00 5.40
14 15 1.597663 GACGCTAAAATCGATGTGGGG 59.402 52.381 0.00 3.48 0.00 4.96
15 16 1.257936 CGACGCTAAAATCGATGTGGG 59.742 52.381 0.00 0.91 40.86 4.61
16 17 1.257936 CCGACGCTAAAATCGATGTGG 59.742 52.381 0.00 0.00 40.86 4.17
17 18 1.924524 ACCGACGCTAAAATCGATGTG 59.075 47.619 0.00 0.00 40.86 3.21
18 19 2.288961 ACCGACGCTAAAATCGATGT 57.711 45.000 0.00 0.00 40.86 3.06
19 20 3.795101 ACTTACCGACGCTAAAATCGATG 59.205 43.478 0.00 0.00 40.86 3.84
20 21 4.037858 ACTTACCGACGCTAAAATCGAT 57.962 40.909 0.00 0.00 40.86 3.59
21 22 3.429085 GACTTACCGACGCTAAAATCGA 58.571 45.455 0.00 0.00 40.86 3.59
22 23 2.533129 GGACTTACCGACGCTAAAATCG 59.467 50.000 0.00 0.00 38.08 3.34
23 24 2.862536 GGGACTTACCGACGCTAAAATC 59.137 50.000 0.00 0.00 40.11 2.17
24 25 2.419159 GGGGACTTACCGACGCTAAAAT 60.419 50.000 0.00 0.00 40.11 1.82
25 26 1.066929 GGGGACTTACCGACGCTAAAA 60.067 52.381 0.00 0.00 40.11 1.52
26 27 0.532115 GGGGACTTACCGACGCTAAA 59.468 55.000 0.00 0.00 40.11 1.85
27 28 0.611618 TGGGGACTTACCGACGCTAA 60.612 55.000 0.00 0.00 40.11 3.09
28 29 1.001020 TGGGGACTTACCGACGCTA 60.001 57.895 0.00 0.00 40.11 4.26
29 30 2.283388 TGGGGACTTACCGACGCT 60.283 61.111 0.00 0.00 40.11 5.07
30 31 2.183555 CTGGGGACTTACCGACGC 59.816 66.667 0.00 0.00 40.11 5.19
31 32 2.890371 CCTGGGGACTTACCGACG 59.110 66.667 0.00 0.00 40.11 5.12
32 33 2.582978 GCCTGGGGACTTACCGAC 59.417 66.667 0.00 0.00 40.11 4.79
33 34 3.072468 CGCCTGGGGACTTACCGA 61.072 66.667 4.46 0.00 40.11 4.69
34 35 4.157120 CCGCCTGGGGACTTACCG 62.157 72.222 12.98 0.00 40.11 4.02
35 36 4.484872 GCCGCCTGGGGACTTACC 62.485 72.222 12.98 0.00 35.78 2.85
43 44 1.727467 CTAAAAATCGCCGCCTGGG 59.273 57.895 0.00 0.00 39.58 4.45
44 45 1.064134 GCTAAAAATCGCCGCCTGG 59.936 57.895 0.00 0.00 38.77 4.45
45 46 1.297598 CGCTAAAAATCGCCGCCTG 60.298 57.895 0.00 0.00 0.00 4.85
46 47 3.098555 CGCTAAAAATCGCCGCCT 58.901 55.556 0.00 0.00 0.00 5.52
47 48 2.650917 GCGCTAAAAATCGCCGCC 60.651 61.111 0.00 0.00 45.01 6.13
52 53 0.657840 CCAGGAGGCGCTAAAAATCG 59.342 55.000 7.64 0.00 0.00 3.34
53 54 1.025041 CCCAGGAGGCGCTAAAAATC 58.975 55.000 7.64 0.00 0.00 2.17
54 55 0.395724 CCCCAGGAGGCGCTAAAAAT 60.396 55.000 7.64 0.00 0.00 1.82
55 56 1.001393 CCCCAGGAGGCGCTAAAAA 60.001 57.895 7.64 0.00 0.00 1.94
56 57 2.674754 CCCCAGGAGGCGCTAAAA 59.325 61.111 7.64 0.00 0.00 1.52
57 58 3.407967 CCCCCAGGAGGCGCTAAA 61.408 66.667 7.64 0.00 33.47 1.85
76 77 2.093216 GAGCATCTTCAGCCGTTGG 58.907 57.895 0.00 0.00 0.00 3.77
88 89 2.796032 GCGGCCAAAATGTAAGAGCATC 60.796 50.000 2.24 0.00 0.00 3.91
89 90 1.134946 GCGGCCAAAATGTAAGAGCAT 59.865 47.619 2.24 0.00 0.00 3.79
90 91 0.525761 GCGGCCAAAATGTAAGAGCA 59.474 50.000 2.24 0.00 0.00 4.26
91 92 0.525761 TGCGGCCAAAATGTAAGAGC 59.474 50.000 2.24 0.00 0.00 4.09
92 93 1.539388 TGTGCGGCCAAAATGTAAGAG 59.461 47.619 2.24 0.00 0.00 2.85
93 94 1.539388 CTGTGCGGCCAAAATGTAAGA 59.461 47.619 2.24 0.00 0.00 2.10
94 95 1.269448 ACTGTGCGGCCAAAATGTAAG 59.731 47.619 2.24 0.00 0.00 2.34
95 96 1.323412 ACTGTGCGGCCAAAATGTAA 58.677 45.000 2.24 0.00 0.00 2.41
96 97 2.186532 TACTGTGCGGCCAAAATGTA 57.813 45.000 2.24 0.00 0.00 2.29
97 98 1.544724 ATACTGTGCGGCCAAAATGT 58.455 45.000 2.24 0.00 0.00 2.71
98 99 3.988379 ATATACTGTGCGGCCAAAATG 57.012 42.857 2.24 0.00 0.00 2.32
99 100 5.221165 GGTTTATATACTGTGCGGCCAAAAT 60.221 40.000 2.24 0.00 0.00 1.82
100 101 4.096682 GGTTTATATACTGTGCGGCCAAAA 59.903 41.667 2.24 0.00 0.00 2.44
101 102 3.628487 GGTTTATATACTGTGCGGCCAAA 59.372 43.478 2.24 0.00 0.00 3.28
102 103 3.207778 GGTTTATATACTGTGCGGCCAA 58.792 45.455 2.24 0.00 0.00 4.52
103 104 2.170817 TGGTTTATATACTGTGCGGCCA 59.829 45.455 2.24 0.00 0.00 5.36
104 105 2.841215 TGGTTTATATACTGTGCGGCC 58.159 47.619 0.00 0.00 0.00 6.13
105 106 4.261031 CCTTTGGTTTATATACTGTGCGGC 60.261 45.833 0.00 0.00 0.00 6.53
106 107 5.120399 TCCTTTGGTTTATATACTGTGCGG 58.880 41.667 0.00 0.00 0.00 5.69
107 108 6.671614 TTCCTTTGGTTTATATACTGTGCG 57.328 37.500 0.00 0.00 0.00 5.34
108 109 7.973944 CCTTTTCCTTTGGTTTATATACTGTGC 59.026 37.037 0.00 0.00 0.00 4.57
109 110 7.973944 GCCTTTTCCTTTGGTTTATATACTGTG 59.026 37.037 0.00 0.00 0.00 3.66
110 111 7.123697 GGCCTTTTCCTTTGGTTTATATACTGT 59.876 37.037 0.00 0.00 0.00 3.55
111 112 7.417456 GGGCCTTTTCCTTTGGTTTATATACTG 60.417 40.741 0.84 0.00 0.00 2.74
112 113 6.610020 GGGCCTTTTCCTTTGGTTTATATACT 59.390 38.462 0.84 0.00 0.00 2.12
113 114 6.381707 TGGGCCTTTTCCTTTGGTTTATATAC 59.618 38.462 4.53 0.00 0.00 1.47
114 115 6.503944 TGGGCCTTTTCCTTTGGTTTATATA 58.496 36.000 4.53 0.00 0.00 0.86
115 116 5.346270 TGGGCCTTTTCCTTTGGTTTATAT 58.654 37.500 4.53 0.00 0.00 0.86
116 117 4.753186 TGGGCCTTTTCCTTTGGTTTATA 58.247 39.130 4.53 0.00 0.00 0.98
117 118 3.592865 TGGGCCTTTTCCTTTGGTTTAT 58.407 40.909 4.53 0.00 0.00 1.40
118 119 3.047695 TGGGCCTTTTCCTTTGGTTTA 57.952 42.857 4.53 0.00 0.00 2.01
119 120 1.886422 TGGGCCTTTTCCTTTGGTTT 58.114 45.000 4.53 0.00 0.00 3.27
120 121 1.699083 CATGGGCCTTTTCCTTTGGTT 59.301 47.619 4.53 0.00 0.00 3.67
121 122 1.351076 CATGGGCCTTTTCCTTTGGT 58.649 50.000 4.53 0.00 0.00 3.67
122 123 1.351076 ACATGGGCCTTTTCCTTTGG 58.649 50.000 4.53 0.00 0.00 3.28
123 124 3.056607 CACTACATGGGCCTTTTCCTTTG 60.057 47.826 4.53 0.00 0.00 2.77
124 125 3.165071 CACTACATGGGCCTTTTCCTTT 58.835 45.455 4.53 0.00 0.00 3.11
125 126 2.378547 TCACTACATGGGCCTTTTCCTT 59.621 45.455 4.53 0.00 0.00 3.36
126 127 1.992557 TCACTACATGGGCCTTTTCCT 59.007 47.619 4.53 0.00 0.00 3.36
127 128 2.507407 TCACTACATGGGCCTTTTCC 57.493 50.000 4.53 0.00 0.00 3.13
128 129 4.016444 TGATTCACTACATGGGCCTTTTC 58.984 43.478 4.53 0.00 0.00 2.29
129 130 4.046286 TGATTCACTACATGGGCCTTTT 57.954 40.909 4.53 0.00 0.00 2.27
130 131 3.737559 TGATTCACTACATGGGCCTTT 57.262 42.857 4.53 0.00 0.00 3.11
131 132 3.737559 TTGATTCACTACATGGGCCTT 57.262 42.857 4.53 0.00 0.00 4.35
132 133 3.959495 ATTGATTCACTACATGGGCCT 57.041 42.857 4.53 0.00 0.00 5.19
133 134 4.160252 ACAAATTGATTCACTACATGGGCC 59.840 41.667 0.00 0.00 0.00 5.80
134 135 5.126061 AGACAAATTGATTCACTACATGGGC 59.874 40.000 0.00 0.00 0.00 5.36
135 136 6.764308 AGACAAATTGATTCACTACATGGG 57.236 37.500 0.00 0.00 0.00 4.00
136 137 9.132521 GAAAAGACAAATTGATTCACTACATGG 57.867 33.333 0.00 0.00 0.00 3.66
137 138 9.681692 TGAAAAGACAAATTGATTCACTACATG 57.318 29.630 0.00 0.00 0.00 3.21
138 139 9.683069 GTGAAAAGACAAATTGATTCACTACAT 57.317 29.630 19.96 0.00 41.92 2.29
144 145 9.695526 CCATAAGTGAAAAGACAAATTGATTCA 57.304 29.630 0.00 2.52 0.00 2.57
145 146 9.143631 CCCATAAGTGAAAAGACAAATTGATTC 57.856 33.333 0.00 0.00 0.00 2.52
146 147 8.650490 ACCCATAAGTGAAAAGACAAATTGATT 58.350 29.630 0.00 0.00 0.00 2.57
147 148 8.090214 CACCCATAAGTGAAAAGACAAATTGAT 58.910 33.333 0.00 0.00 40.34 2.57
148 149 7.286546 TCACCCATAAGTGAAAAGACAAATTGA 59.713 33.333 0.00 0.00 43.65 2.57
149 150 7.432869 TCACCCATAAGTGAAAAGACAAATTG 58.567 34.615 0.00 0.00 43.65 2.32
150 151 7.595819 TCACCCATAAGTGAAAAGACAAATT 57.404 32.000 0.00 0.00 43.65 1.82
161 162 9.601810 ATTATCTACTATGTCACCCATAAGTGA 57.398 33.333 0.00 0.00 44.38 3.41
166 167 9.996554 CACAAATTATCTACTATGTCACCCATA 57.003 33.333 0.00 0.00 34.86 2.74
167 168 8.494433 ACACAAATTATCTACTATGTCACCCAT 58.506 33.333 0.00 0.00 37.58 4.00
168 169 7.857456 ACACAAATTATCTACTATGTCACCCA 58.143 34.615 0.00 0.00 0.00 4.51
169 170 7.985184 TGACACAAATTATCTACTATGTCACCC 59.015 37.037 0.00 0.00 40.05 4.61
170 171 8.942338 TGACACAAATTATCTACTATGTCACC 57.058 34.615 0.00 0.00 40.05 4.02
178 179 8.960591 CCCTGAAATTGACACAAATTATCTACT 58.039 33.333 0.00 0.00 0.00 2.57
179 180 8.190784 CCCCTGAAATTGACACAAATTATCTAC 58.809 37.037 0.00 0.00 0.00 2.59
180 181 7.893302 ACCCCTGAAATTGACACAAATTATCTA 59.107 33.333 0.00 0.00 0.00 1.98
181 182 6.725834 ACCCCTGAAATTGACACAAATTATCT 59.274 34.615 0.00 0.00 0.00 1.98
182 183 6.935167 ACCCCTGAAATTGACACAAATTATC 58.065 36.000 0.00 0.00 0.00 1.75
183 184 6.933514 ACCCCTGAAATTGACACAAATTAT 57.066 33.333 0.00 0.00 0.00 1.28
184 185 7.841282 TTACCCCTGAAATTGACACAAATTA 57.159 32.000 0.00 0.00 0.00 1.40
185 186 6.739331 TTACCCCTGAAATTGACACAAATT 57.261 33.333 0.00 0.00 0.00 1.82
186 187 6.933514 ATTACCCCTGAAATTGACACAAAT 57.066 33.333 0.00 0.00 0.00 2.32
187 188 6.739331 AATTACCCCTGAAATTGACACAAA 57.261 33.333 0.00 0.00 0.00 2.83
188 189 6.739331 AAATTACCCCTGAAATTGACACAA 57.261 33.333 0.00 0.00 0.00 3.33
189 190 6.739331 AAAATTACCCCTGAAATTGACACA 57.261 33.333 0.00 0.00 0.00 3.72
190 191 9.150348 CATTAAAATTACCCCTGAAATTGACAC 57.850 33.333 0.00 0.00 0.00 3.67
191 192 9.094578 TCATTAAAATTACCCCTGAAATTGACA 57.905 29.630 0.00 0.00 0.00 3.58
192 193 9.366216 GTCATTAAAATTACCCCTGAAATTGAC 57.634 33.333 0.00 0.00 0.00 3.18
193 194 9.094578 TGTCATTAAAATTACCCCTGAAATTGA 57.905 29.630 0.00 0.00 0.00 2.57
194 195 9.889128 ATGTCATTAAAATTACCCCTGAAATTG 57.111 29.630 0.00 0.00 0.00 2.32
196 197 8.704668 GGATGTCATTAAAATTACCCCTGAAAT 58.295 33.333 0.00 0.00 0.00 2.17
197 198 7.676043 TGGATGTCATTAAAATTACCCCTGAAA 59.324 33.333 0.00 0.00 0.00 2.69
198 199 7.185565 TGGATGTCATTAAAATTACCCCTGAA 58.814 34.615 0.00 0.00 0.00 3.02
199 200 6.736581 TGGATGTCATTAAAATTACCCCTGA 58.263 36.000 0.00 0.00 0.00 3.86
200 201 6.040842 CCTGGATGTCATTAAAATTACCCCTG 59.959 42.308 0.00 0.00 0.00 4.45
201 202 6.136155 CCTGGATGTCATTAAAATTACCCCT 58.864 40.000 0.00 0.00 0.00 4.79
202 203 5.221441 GCCTGGATGTCATTAAAATTACCCC 60.221 44.000 0.00 0.00 0.00 4.95
203 204 5.362430 TGCCTGGATGTCATTAAAATTACCC 59.638 40.000 0.00 0.00 0.00 3.69
204 205 6.321181 TCTGCCTGGATGTCATTAAAATTACC 59.679 38.462 0.00 0.00 0.00 2.85
205 206 7.333528 TCTGCCTGGATGTCATTAAAATTAC 57.666 36.000 0.00 0.00 0.00 1.89
206 207 7.953005 TTCTGCCTGGATGTCATTAAAATTA 57.047 32.000 0.00 0.00 0.00 1.40
207 208 6.855763 TTCTGCCTGGATGTCATTAAAATT 57.144 33.333 0.00 0.00 0.00 1.82
208 209 6.211184 TGTTTCTGCCTGGATGTCATTAAAAT 59.789 34.615 0.00 0.00 0.00 1.82
209 210 5.538053 TGTTTCTGCCTGGATGTCATTAAAA 59.462 36.000 0.00 0.00 0.00 1.52
210 211 5.076182 TGTTTCTGCCTGGATGTCATTAAA 58.924 37.500 0.00 0.00 0.00 1.52
211 212 4.661222 TGTTTCTGCCTGGATGTCATTAA 58.339 39.130 0.00 0.00 0.00 1.40
212 213 4.299586 TGTTTCTGCCTGGATGTCATTA 57.700 40.909 0.00 0.00 0.00 1.90
213 214 3.159213 TGTTTCTGCCTGGATGTCATT 57.841 42.857 0.00 0.00 0.00 2.57
214 215 2.885135 TGTTTCTGCCTGGATGTCAT 57.115 45.000 0.00 0.00 0.00 3.06
215 216 2.655090 TTGTTTCTGCCTGGATGTCA 57.345 45.000 0.00 0.00 0.00 3.58
216 217 3.065925 GCTATTGTTTCTGCCTGGATGTC 59.934 47.826 0.00 0.00 0.00 3.06
217 218 3.019564 GCTATTGTTTCTGCCTGGATGT 58.980 45.455 0.00 0.00 0.00 3.06
218 219 2.360165 GGCTATTGTTTCTGCCTGGATG 59.640 50.000 0.00 0.00 41.92 3.51
219 220 2.659428 GGCTATTGTTTCTGCCTGGAT 58.341 47.619 0.00 0.00 41.92 3.41
220 221 1.340991 GGGCTATTGTTTCTGCCTGGA 60.341 52.381 0.00 0.00 44.36 3.86
221 222 1.106285 GGGCTATTGTTTCTGCCTGG 58.894 55.000 0.00 0.00 44.36 4.45
222 223 1.106285 GGGGCTATTGTTTCTGCCTG 58.894 55.000 0.00 0.00 44.36 4.85
223 224 1.002857 AGGGGCTATTGTTTCTGCCT 58.997 50.000 0.00 0.00 44.36 4.75
224 225 1.852633 AAGGGGCTATTGTTTCTGCC 58.147 50.000 0.00 0.00 44.22 4.85
225 226 5.598416 AATAAAGGGGCTATTGTTTCTGC 57.402 39.130 0.00 0.00 0.00 4.26
227 228 9.078990 GCTAATAATAAAGGGGCTATTGTTTCT 57.921 33.333 0.00 0.00 0.00 2.52
228 229 9.078990 AGCTAATAATAAAGGGGCTATTGTTTC 57.921 33.333 0.00 0.00 0.00 2.78
229 230 8.860088 CAGCTAATAATAAAGGGGCTATTGTTT 58.140 33.333 0.00 0.00 0.00 2.83
230 231 8.224720 TCAGCTAATAATAAAGGGGCTATTGTT 58.775 33.333 0.00 0.00 0.00 2.83
231 232 7.755618 TCAGCTAATAATAAAGGGGCTATTGT 58.244 34.615 0.00 0.00 0.00 2.71
232 233 8.103305 TCTCAGCTAATAATAAAGGGGCTATTG 58.897 37.037 0.00 0.00 0.00 1.90
233 234 8.219660 TCTCAGCTAATAATAAAGGGGCTATT 57.780 34.615 0.00 0.00 0.00 1.73
234 235 7.814693 TCTCAGCTAATAATAAAGGGGCTAT 57.185 36.000 0.00 0.00 0.00 2.97
235 236 7.814693 ATCTCAGCTAATAATAAAGGGGCTA 57.185 36.000 0.00 0.00 0.00 3.93
236 237 6.710499 ATCTCAGCTAATAATAAAGGGGCT 57.290 37.500 0.00 0.00 0.00 5.19
237 238 7.448469 TGAAATCTCAGCTAATAATAAAGGGGC 59.552 37.037 0.00 0.00 0.00 5.80
238 239 8.924511 TGAAATCTCAGCTAATAATAAAGGGG 57.075 34.615 0.00 0.00 0.00 4.79
254 255 2.356125 GGGGCTTGCTACTGAAATCTCA 60.356 50.000 0.00 0.00 0.00 3.27
255 256 2.293170 GGGGCTTGCTACTGAAATCTC 58.707 52.381 0.00 0.00 0.00 2.75
256 257 1.407437 CGGGGCTTGCTACTGAAATCT 60.407 52.381 0.00 0.00 0.00 2.40
257 258 1.017387 CGGGGCTTGCTACTGAAATC 58.983 55.000 0.00 0.00 0.00 2.17
263 264 0.893727 CAAAACCGGGGCTTGCTACT 60.894 55.000 6.32 0.00 0.00 2.57
272 273 2.912025 AGTGCTGCAAAACCGGGG 60.912 61.111 6.32 0.00 0.00 5.73
297 298 3.197116 CACTTTCCCGGTAGGTACTGATT 59.803 47.826 0.00 0.00 41.52 2.57
298 299 2.764572 CACTTTCCCGGTAGGTACTGAT 59.235 50.000 0.00 0.00 41.52 2.90
299 300 2.173519 CACTTTCCCGGTAGGTACTGA 58.826 52.381 0.00 0.00 41.52 3.41
300 301 1.405121 GCACTTTCCCGGTAGGTACTG 60.405 57.143 0.00 0.00 41.52 2.74
301 302 0.900421 GCACTTTCCCGGTAGGTACT 59.100 55.000 0.00 0.00 46.37 2.73
302 303 0.609662 TGCACTTTCCCGGTAGGTAC 59.390 55.000 0.00 0.00 36.75 3.34
303 304 0.899720 CTGCACTTTCCCGGTAGGTA 59.100 55.000 0.00 0.00 36.75 3.08
367 371 3.823304 GCCTTCTTCTTTGGTCAAGATGT 59.177 43.478 0.00 0.00 41.42 3.06
381 385 6.575162 TTTCAATGACCTTAAGCCTTCTTC 57.425 37.500 0.00 0.00 33.85 2.87
480 484 1.211949 AGCCGCTGCCCTCTATTTAAA 59.788 47.619 0.00 0.00 38.69 1.52
992 1229 3.197983 GTCAAAGTACCATGAGGGCTAGT 59.802 47.826 0.00 0.00 42.05 2.57
996 1233 2.489938 TGTCAAAGTACCATGAGGGC 57.510 50.000 0.00 0.00 42.05 5.19
1043 1280 2.330286 CGTGCTTCCGTTATGTACACA 58.670 47.619 0.00 0.00 0.00 3.72
1216 1453 0.107606 CTCCTCGTCTTCCTCCTCGA 60.108 60.000 0.00 0.00 0.00 4.04
1292 1529 3.740128 CTCGGACGCCATGGAAGGG 62.740 68.421 18.40 3.27 43.76 3.95
1364 1601 1.170442 TAGACGCGTCTGTTGGATGA 58.830 50.000 43.41 23.76 40.71 2.92
1405 1646 2.686915 GGGCTCTGTTCCATCAATCAAG 59.313 50.000 0.00 0.00 0.00 3.02
1410 1651 0.329261 CAGGGGCTCTGTTCCATCAA 59.671 55.000 6.11 0.00 38.64 2.57
1604 1847 3.469008 AAAATCAGTGACCAGTGTCGA 57.531 42.857 0.00 0.00 44.86 4.20
1873 2119 1.518774 GTTGAATCGCCGGACCCTA 59.481 57.895 5.05 0.00 0.00 3.53
1877 2123 3.861263 GCCGTTGAATCGCCGGAC 61.861 66.667 5.05 0.00 44.41 4.79
2011 2257 2.094494 ACAGAGCACGGTCAGTTGATAG 60.094 50.000 0.00 0.00 0.00 2.08
2087 2333 3.012119 TGGGTGGCCGCCAAGATA 61.012 61.111 35.55 13.85 34.18 1.98
2088 2334 4.740822 GTGGGTGGCCGCCAAGAT 62.741 66.667 35.55 0.00 34.18 2.40
2135 2381 0.545646 GGGAGAGGCTGCTGATCTTT 59.454 55.000 0.00 0.00 0.00 2.52
2219 2465 1.554042 CGAACTGGTTTGACGACCCG 61.554 60.000 0.00 0.00 39.01 5.28
2473 2719 3.766496 AAAACAAGCGTGCCGTGGC 62.766 57.895 3.30 3.30 42.35 5.01
2492 2738 3.470888 CGGCTGGACACCTAGGGG 61.471 72.222 10.33 10.33 38.88 4.79
2626 2877 2.294791 CTGCCAATAACCGGTTGTTTGA 59.705 45.455 30.94 15.64 38.42 2.69
2944 3195 1.384783 ACCACCACTACCACCACCA 60.385 57.895 0.00 0.00 0.00 4.17
2945 3196 1.072505 CACCACCACTACCACCACC 59.927 63.158 0.00 0.00 0.00 4.61
2946 3197 1.072505 CCACCACCACTACCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
3247 3508 5.050769 GCATGTGTGGATTATTCTCGTACAG 60.051 44.000 0.00 0.00 0.00 2.74
3248 3509 4.808895 GCATGTGTGGATTATTCTCGTACA 59.191 41.667 0.00 0.00 0.00 2.90
3269 3530 5.178252 CGAACAAAGAGAGAGAAGAATTGCA 59.822 40.000 0.00 0.00 0.00 4.08
3270 3531 5.178438 ACGAACAAAGAGAGAGAAGAATTGC 59.822 40.000 0.00 0.00 0.00 3.56
3271 3532 6.777526 ACGAACAAAGAGAGAGAAGAATTG 57.222 37.500 0.00 0.00 0.00 2.32
3272 3533 7.064016 GCATACGAACAAAGAGAGAGAAGAATT 59.936 37.037 0.00 0.00 0.00 2.17
3273 3534 6.533367 GCATACGAACAAAGAGAGAGAAGAAT 59.467 38.462 0.00 0.00 0.00 2.40
3274 3535 5.864474 GCATACGAACAAAGAGAGAGAAGAA 59.136 40.000 0.00 0.00 0.00 2.52
3275 3536 5.403246 GCATACGAACAAAGAGAGAGAAGA 58.597 41.667 0.00 0.00 0.00 2.87
3276 3537 4.264145 CGCATACGAACAAAGAGAGAGAAG 59.736 45.833 0.00 0.00 43.93 2.85
3277 3538 4.166523 CGCATACGAACAAAGAGAGAGAA 58.833 43.478 0.00 0.00 43.93 2.87
3278 3539 3.190744 ACGCATACGAACAAAGAGAGAGA 59.809 43.478 0.00 0.00 43.93 3.10
3279 3540 3.301906 CACGCATACGAACAAAGAGAGAG 59.698 47.826 0.00 0.00 43.93 3.20
3280 3541 3.242518 CACGCATACGAACAAAGAGAGA 58.757 45.455 0.00 0.00 43.93 3.10
3281 3542 2.987149 ACACGCATACGAACAAAGAGAG 59.013 45.455 0.00 0.00 43.93 3.20
3282 3543 3.021269 ACACGCATACGAACAAAGAGA 57.979 42.857 0.00 0.00 43.93 3.10
3283 3544 3.241678 GCTACACGCATACGAACAAAGAG 60.242 47.826 0.00 0.00 43.93 2.85
3284 3545 2.664568 GCTACACGCATACGAACAAAGA 59.335 45.455 0.00 0.00 43.93 2.52
3285 3546 2.666508 AGCTACACGCATACGAACAAAG 59.333 45.455 0.00 0.00 43.93 2.77
3286 3547 2.664568 GAGCTACACGCATACGAACAAA 59.335 45.455 0.00 0.00 43.93 2.83
3287 3548 2.094906 AGAGCTACACGCATACGAACAA 60.095 45.455 0.00 0.00 43.93 2.83
3334 3617 3.186409 CGTTGATACACCCTGTTGTCTTG 59.814 47.826 0.00 0.00 0.00 3.02
3346 3630 3.314541 AACCCACTCTCGTTGATACAC 57.685 47.619 0.00 0.00 0.00 2.90
3358 3642 1.674651 GGGAGCCGAAAACCCACTC 60.675 63.158 0.00 0.00 42.81 3.51
3359 3643 2.434774 GGGAGCCGAAAACCCACT 59.565 61.111 0.00 0.00 42.81 4.00
3380 3664 0.539051 AAATCTCAGGCTCCGTGGAG 59.461 55.000 11.67 11.67 44.56 3.86
3381 3665 0.537188 GAAATCTCAGGCTCCGTGGA 59.463 55.000 0.00 0.00 0.00 4.02
3382 3666 0.807667 CGAAATCTCAGGCTCCGTGG 60.808 60.000 0.00 0.00 0.00 4.94
3395 3679 3.004315 TGGTTTTTGGACTGCTCGAAATC 59.996 43.478 0.00 0.00 0.00 2.17
3408 3692 6.091441 TCAAAACTTCGAAATGTGGTTTTTGG 59.909 34.615 17.56 10.83 37.80 3.28
3440 3724 3.307674 ACGCACATGTGTATTTTTGCAG 58.692 40.909 26.01 8.78 36.94 4.41
3443 3727 4.155099 TCCCTACGCACATGTGTATTTTTG 59.845 41.667 26.01 10.54 39.88 2.44
3458 3742 0.388294 GGTAGACACCATCCCTACGC 59.612 60.000 0.00 0.00 45.04 4.42
3619 3903 6.066054 TCGACATTTGTGCAAAGTTTATGA 57.934 33.333 3.70 0.00 33.32 2.15
3640 3925 4.570772 CACCTGTACATAGGGATGTTTTCG 59.429 45.833 6.63 0.00 44.18 3.46
3779 4066 4.060900 CTCTATTGGTTCATCCATCGTGG 58.939 47.826 0.00 0.00 46.60 4.94
3780 4067 4.747108 GTCTCTATTGGTTCATCCATCGTG 59.253 45.833 0.00 0.00 46.60 4.35
3807 4094 0.396435 TTGACACCGACAGCATCCTT 59.604 50.000 0.00 0.00 0.00 3.36
3819 4106 0.521735 GATCTGCCGGTTTTGACACC 59.478 55.000 1.90 0.00 0.00 4.16
3820 4107 1.464997 GAGATCTGCCGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
3821 4108 1.808411 GAGATCTGCCGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
3822 4109 0.721718 CGAGATCTGCCGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
3823 4110 0.391130 CCGAGATCTGCCGGTTTTGA 60.391 55.000 13.39 0.00 40.78 2.69
3824 4111 1.369091 CCCGAGATCTGCCGGTTTTG 61.369 60.000 18.55 3.10 43.93 2.44
3825 4112 1.078426 CCCGAGATCTGCCGGTTTT 60.078 57.895 18.55 0.00 43.93 2.43
3826 4113 0.974010 TACCCGAGATCTGCCGGTTT 60.974 55.000 18.55 9.73 43.93 3.27
3827 4114 1.380785 TACCCGAGATCTGCCGGTT 60.381 57.895 18.55 9.56 43.93 4.44
3828 4115 1.828660 CTACCCGAGATCTGCCGGT 60.829 63.158 18.55 13.92 43.93 5.28
3829 4116 2.565645 CCTACCCGAGATCTGCCGG 61.566 68.421 14.42 14.42 44.94 6.13
3830 4117 2.565645 CCCTACCCGAGATCTGCCG 61.566 68.421 0.00 0.00 0.00 5.69
3831 4118 2.210711 CCCCTACCCGAGATCTGCC 61.211 68.421 0.00 0.00 0.00 4.85
3832 4119 2.210711 CCCCCTACCCGAGATCTGC 61.211 68.421 0.00 0.00 0.00 4.26
3833 4120 0.828343 GACCCCCTACCCGAGATCTG 60.828 65.000 0.00 0.00 0.00 2.90
3834 4121 1.542679 GACCCCCTACCCGAGATCT 59.457 63.158 0.00 0.00 0.00 2.75
3835 4122 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
3836 4123 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
3837 4124 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
3841 4128 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
3842 4129 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
3843 4130 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
3844 4131 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
3845 4132 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
3846 4133 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
3848 4135 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
3849 4136 2.737376 GACGCACAGTTCGGGACC 60.737 66.667 0.00 0.00 0.00 4.46
3850 4137 2.022129 CAGACGCACAGTTCGGGAC 61.022 63.158 0.00 0.00 0.00 4.46
3851 4138 2.142357 CTCAGACGCACAGTTCGGGA 62.142 60.000 0.00 0.00 0.00 5.14
3852 4139 1.734477 CTCAGACGCACAGTTCGGG 60.734 63.158 0.00 0.00 0.00 5.14
3853 4140 1.734477 CCTCAGACGCACAGTTCGG 60.734 63.158 0.00 0.00 0.00 4.30
3854 4141 0.109086 ATCCTCAGACGCACAGTTCG 60.109 55.000 0.00 0.00 0.00 3.95
3855 4142 1.634702 GATCCTCAGACGCACAGTTC 58.365 55.000 0.00 0.00 0.00 3.01
3856 4143 0.109086 CGATCCTCAGACGCACAGTT 60.109 55.000 0.00 0.00 0.00 3.16
3857 4144 0.960861 TCGATCCTCAGACGCACAGT 60.961 55.000 0.00 0.00 0.00 3.55
3858 4145 0.171231 TTCGATCCTCAGACGCACAG 59.829 55.000 0.00 0.00 0.00 3.66
3859 4146 0.171231 CTTCGATCCTCAGACGCACA 59.829 55.000 0.00 0.00 0.00 4.57
3860 4147 0.526524 CCTTCGATCCTCAGACGCAC 60.527 60.000 0.00 0.00 0.00 5.34
3861 4148 0.965866 ACCTTCGATCCTCAGACGCA 60.966 55.000 0.00 0.00 0.00 5.24
3862 4149 1.022735 TACCTTCGATCCTCAGACGC 58.977 55.000 0.00 0.00 0.00 5.19
3863 4150 2.422479 TGTTACCTTCGATCCTCAGACG 59.578 50.000 0.00 0.00 0.00 4.18
3864 4151 3.181485 CCTGTTACCTTCGATCCTCAGAC 60.181 52.174 0.00 0.00 0.00 3.51
3865 4152 3.024547 CCTGTTACCTTCGATCCTCAGA 58.975 50.000 0.00 0.00 0.00 3.27
3866 4153 3.024547 TCCTGTTACCTTCGATCCTCAG 58.975 50.000 0.00 0.00 0.00 3.35
3867 4154 3.024547 CTCCTGTTACCTTCGATCCTCA 58.975 50.000 0.00 0.00 0.00 3.86
3868 4155 3.067040 GTCTCCTGTTACCTTCGATCCTC 59.933 52.174 0.00 0.00 0.00 3.71
3869 4156 3.025262 GTCTCCTGTTACCTTCGATCCT 58.975 50.000 0.00 0.00 0.00 3.24
3870 4157 2.758979 TGTCTCCTGTTACCTTCGATCC 59.241 50.000 0.00 0.00 0.00 3.36
3871 4158 3.181485 CCTGTCTCCTGTTACCTTCGATC 60.181 52.174 0.00 0.00 0.00 3.69
3872 4159 2.761208 CCTGTCTCCTGTTACCTTCGAT 59.239 50.000 0.00 0.00 0.00 3.59
3873 4160 2.168496 CCTGTCTCCTGTTACCTTCGA 58.832 52.381 0.00 0.00 0.00 3.71
3874 4161 1.204941 CCCTGTCTCCTGTTACCTTCG 59.795 57.143 0.00 0.00 0.00 3.79
3875 4162 2.234168 GTCCCTGTCTCCTGTTACCTTC 59.766 54.545 0.00 0.00 0.00 3.46
3876 4163 2.258109 GTCCCTGTCTCCTGTTACCTT 58.742 52.381 0.00 0.00 0.00 3.50
3877 4164 1.149288 TGTCCCTGTCTCCTGTTACCT 59.851 52.381 0.00 0.00 0.00 3.08
3878 4165 1.275573 GTGTCCCTGTCTCCTGTTACC 59.724 57.143 0.00 0.00 0.00 2.85
3879 4166 1.968493 TGTGTCCCTGTCTCCTGTTAC 59.032 52.381 0.00 0.00 0.00 2.50
3880 4167 2.391926 TGTGTCCCTGTCTCCTGTTA 57.608 50.000 0.00 0.00 0.00 2.41
3881 4168 1.507140 TTGTGTCCCTGTCTCCTGTT 58.493 50.000 0.00 0.00 0.00 3.16
3882 4169 1.734655 ATTGTGTCCCTGTCTCCTGT 58.265 50.000 0.00 0.00 0.00 4.00
3883 4170 4.494091 AATATTGTGTCCCTGTCTCCTG 57.506 45.455 0.00 0.00 0.00 3.86
3884 4171 5.104485 GGTAAATATTGTGTCCCTGTCTCCT 60.104 44.000 0.00 0.00 0.00 3.69
3885 4172 5.123936 GGTAAATATTGTGTCCCTGTCTCC 58.876 45.833 0.00 0.00 0.00 3.71
3886 4173 5.123936 GGGTAAATATTGTGTCCCTGTCTC 58.876 45.833 9.06 0.00 32.89 3.36
3887 4174 4.538490 TGGGTAAATATTGTGTCCCTGTCT 59.462 41.667 14.36 0.00 36.23 3.41
3888 4175 4.850680 TGGGTAAATATTGTGTCCCTGTC 58.149 43.478 14.36 0.00 36.23 3.51
3889 4176 4.325030 CCTGGGTAAATATTGTGTCCCTGT 60.325 45.833 14.36 0.00 36.23 4.00
3890 4177 4.207165 CCTGGGTAAATATTGTGTCCCTG 58.793 47.826 14.36 13.56 36.23 4.45
3891 4178 3.856206 ACCTGGGTAAATATTGTGTCCCT 59.144 43.478 14.36 0.00 36.23 4.20
3892 4179 4.245251 ACCTGGGTAAATATTGTGTCCC 57.755 45.455 0.00 9.28 35.85 4.46
3893 4180 4.334481 CGAACCTGGGTAAATATTGTGTCC 59.666 45.833 0.00 0.00 0.00 4.02
3894 4181 4.334481 CCGAACCTGGGTAAATATTGTGTC 59.666 45.833 0.00 0.00 0.00 3.67
3895 4182 4.266714 CCGAACCTGGGTAAATATTGTGT 58.733 43.478 0.00 0.00 0.00 3.72
3896 4183 3.630312 CCCGAACCTGGGTAAATATTGTG 59.370 47.826 0.00 0.00 44.76 3.33
3897 4184 3.893521 CCCGAACCTGGGTAAATATTGT 58.106 45.455 0.00 0.00 44.76 2.71
3908 4195 1.672356 CAAGAGTGCCCGAACCTGG 60.672 63.158 0.00 0.00 0.00 4.45
3909 4196 1.371183 TCAAGAGTGCCCGAACCTG 59.629 57.895 0.00 0.00 0.00 4.00
3910 4197 3.885814 TCAAGAGTGCCCGAACCT 58.114 55.556 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.