Multiple sequence alignment - TraesCS4D01G064100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G064100 chr4D 100.000 2909 0 0 1 2909 39407590 39410498 0.000000e+00 5373.0
1 TraesCS4D01G064100 chr4D 89.157 83 7 2 568 649 101499111 101499030 5.130000e-18 102.0
2 TraesCS4D01G064100 chr4A 89.023 1494 80 32 786 2230 560906989 560905531 0.000000e+00 1773.0
3 TraesCS4D01G064100 chr4A 97.644 679 11 3 2232 2909 560905379 560904705 0.000000e+00 1160.0
4 TraesCS4D01G064100 chr4B 90.440 1318 71 18 793 2091 57863404 57864685 0.000000e+00 1685.0
5 TraesCS4D01G064100 chr4B 89.049 694 50 16 2232 2909 57865053 57865736 0.000000e+00 837.0
6 TraesCS4D01G064100 chr4B 84.656 189 11 3 1 173 57862657 57862843 3.850000e-39 172.0
7 TraesCS4D01G064100 chr4B 90.385 52 5 0 679 730 416253424 416253373 5.200000e-08 69.4
8 TraesCS4D01G064100 chr1B 81.316 942 109 39 997 1923 151452602 151453491 0.000000e+00 702.0
9 TraesCS4D01G064100 chr1B 81.316 942 109 39 997 1923 151743708 151742819 0.000000e+00 702.0
10 TraesCS4D01G064100 chr1A 81.150 939 101 44 1005 1923 95832881 95833763 0.000000e+00 684.0
11 TraesCS4D01G064100 chr1D 80.129 931 99 54 1005 1925 100312732 100313586 1.480000e-172 616.0
12 TraesCS4D01G064100 chr1D 92.105 76 5 1 584 658 1250120 1250045 3.960000e-19 106.0
13 TraesCS4D01G064100 chr2B 78.088 251 43 6 117 357 2081713 2081465 6.490000e-32 148.0
14 TraesCS4D01G064100 chr7D 91.463 82 5 2 576 656 634412697 634412617 8.520000e-21 111.0
15 TraesCS4D01G064100 chr7D 91.139 79 5 2 572 648 8593460 8593382 3.960000e-19 106.0
16 TraesCS4D01G064100 chr7D 93.846 65 4 0 583 647 139094621 139094557 6.630000e-17 99.0
17 TraesCS4D01G064100 chr3D 93.333 75 4 1 583 656 20794680 20794606 3.060000e-20 110.0
18 TraesCS4D01G064100 chr5A 88.636 88 7 3 563 648 672806769 672806683 1.430000e-18 104.0
19 TraesCS4D01G064100 chr7B 87.778 90 8 3 583 671 39465899 39465812 5.130000e-18 102.0
20 TraesCS4D01G064100 chr6B 89.157 83 7 2 569 649 675395917 675395999 5.130000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G064100 chr4D 39407590 39410498 2908 False 5373.0 5373 100.000000 1 2909 1 chr4D.!!$F1 2908
1 TraesCS4D01G064100 chr4A 560904705 560906989 2284 True 1466.5 1773 93.333500 786 2909 2 chr4A.!!$R1 2123
2 TraesCS4D01G064100 chr4B 57862657 57865736 3079 False 898.0 1685 88.048333 1 2909 3 chr4B.!!$F1 2908
3 TraesCS4D01G064100 chr1B 151452602 151453491 889 False 702.0 702 81.316000 997 1923 1 chr1B.!!$F1 926
4 TraesCS4D01G064100 chr1B 151742819 151743708 889 True 702.0 702 81.316000 997 1923 1 chr1B.!!$R1 926
5 TraesCS4D01G064100 chr1A 95832881 95833763 882 False 684.0 684 81.150000 1005 1923 1 chr1A.!!$F1 918
6 TraesCS4D01G064100 chr1D 100312732 100313586 854 False 616.0 616 80.129000 1005 1925 1 chr1D.!!$F1 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 614 0.028374 CAACCAACGACGAACCAACC 59.972 55.0 0.0 0.0 0.0 3.77 F
649 672 0.036875 CCACCAGGGTTCAAGTCCTC 59.963 60.0 0.0 0.0 0.0 3.71 F
784 965 0.471191 TGATGAGCGGCTGGATGATT 59.529 50.0 7.5 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 1753 0.179062 TCCTCCTCGTAGTCGTAGCC 60.179 60.0 0.0 0.0 38.33 3.93 R
1511 1757 0.739112 GTCGTCCTCCTCGTAGTCGT 60.739 60.0 0.0 0.0 38.33 4.34 R
1962 2229 1.045407 AGCCCTTCACGAACTACACA 58.955 50.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.511637 GTCCCATTTCTCCTTCCTCCAT 59.488 50.000 0.00 0.00 0.00 3.41
66 70 1.310933 CCTCCATTGACCACTGCTGC 61.311 60.000 0.00 0.00 0.00 5.25
85 89 1.659954 CATCGAGCTACAGCCTCGC 60.660 63.158 14.27 0.00 43.38 5.03
106 110 3.204827 CGCGATGCAAAGAGGGGG 61.205 66.667 0.00 0.00 0.00 5.40
130 147 0.745845 CATGGACTCTTTGCCTCCCG 60.746 60.000 0.00 0.00 0.00 5.14
148 165 2.046023 CATCGGGGCAGCTTGTGA 60.046 61.111 0.00 0.00 0.00 3.58
150 167 1.452651 ATCGGGGCAGCTTGTGATG 60.453 57.895 0.00 0.00 0.00 3.07
180 197 3.065306 CCGGTGGTGGCTACTTGA 58.935 61.111 0.00 0.00 0.00 3.02
181 198 1.373435 CCGGTGGTGGCTACTTGAA 59.627 57.895 0.00 0.00 0.00 2.69
182 199 0.250553 CCGGTGGTGGCTACTTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
183 200 1.156736 CGGTGGTGGCTACTTGAAAG 58.843 55.000 0.00 0.00 0.00 2.62
184 201 1.534729 GGTGGTGGCTACTTGAAAGG 58.465 55.000 0.00 0.00 0.00 3.11
185 202 1.073284 GGTGGTGGCTACTTGAAAGGA 59.927 52.381 0.00 0.00 0.00 3.36
186 203 2.427506 GTGGTGGCTACTTGAAAGGAG 58.572 52.381 0.00 0.00 40.10 3.69
187 204 1.351017 TGGTGGCTACTTGAAAGGAGG 59.649 52.381 4.48 0.00 37.46 4.30
188 205 1.340114 GGTGGCTACTTGAAAGGAGGG 60.340 57.143 4.48 0.00 37.46 4.30
189 206 1.628846 GTGGCTACTTGAAAGGAGGGA 59.371 52.381 4.48 0.00 37.46 4.20
190 207 2.239907 GTGGCTACTTGAAAGGAGGGAT 59.760 50.000 4.48 0.00 37.46 3.85
191 208 2.239654 TGGCTACTTGAAAGGAGGGATG 59.760 50.000 4.48 0.00 37.46 3.51
192 209 2.293170 GCTACTTGAAAGGAGGGATGC 58.707 52.381 4.48 0.00 37.46 3.91
193 210 2.555199 CTACTTGAAAGGAGGGATGCG 58.445 52.381 0.00 0.00 33.12 4.73
194 211 0.035056 ACTTGAAAGGAGGGATGCGG 60.035 55.000 0.00 0.00 0.00 5.69
195 212 0.253044 CTTGAAAGGAGGGATGCGGA 59.747 55.000 0.00 0.00 0.00 5.54
196 213 0.253044 TTGAAAGGAGGGATGCGGAG 59.747 55.000 0.00 0.00 0.00 4.63
197 214 0.617535 TGAAAGGAGGGATGCGGAGA 60.618 55.000 0.00 0.00 0.00 3.71
198 215 0.761802 GAAAGGAGGGATGCGGAGAT 59.238 55.000 0.00 0.00 0.00 2.75
199 216 0.761802 AAAGGAGGGATGCGGAGATC 59.238 55.000 0.00 0.00 0.00 2.75
200 217 0.105246 AAGGAGGGATGCGGAGATCT 60.105 55.000 0.00 0.00 0.00 2.75
201 218 0.831288 AGGAGGGATGCGGAGATCTG 60.831 60.000 0.00 0.00 0.00 2.90
202 219 1.118356 GGAGGGATGCGGAGATCTGT 61.118 60.000 0.00 0.00 0.00 3.41
203 220 0.033228 GAGGGATGCGGAGATCTGTG 59.967 60.000 0.00 0.00 0.00 3.66
204 221 0.397675 AGGGATGCGGAGATCTGTGA 60.398 55.000 0.00 0.00 0.00 3.58
205 222 0.033228 GGGATGCGGAGATCTGTGAG 59.967 60.000 0.00 0.00 0.00 3.51
206 223 0.599728 GGATGCGGAGATCTGTGAGC 60.600 60.000 0.00 0.34 0.00 4.26
207 224 0.388659 GATGCGGAGATCTGTGAGCT 59.611 55.000 0.00 0.00 0.00 4.09
208 225 0.829333 ATGCGGAGATCTGTGAGCTT 59.171 50.000 0.00 0.00 0.00 3.74
209 226 0.108472 TGCGGAGATCTGTGAGCTTG 60.108 55.000 0.00 0.00 0.00 4.01
210 227 0.809241 GCGGAGATCTGTGAGCTTGG 60.809 60.000 0.00 0.00 0.00 3.61
211 228 0.534412 CGGAGATCTGTGAGCTTGGT 59.466 55.000 0.00 0.00 0.00 3.67
212 229 1.738365 CGGAGATCTGTGAGCTTGGTG 60.738 57.143 0.00 0.00 0.00 4.17
213 230 1.552337 GGAGATCTGTGAGCTTGGTGA 59.448 52.381 0.00 0.00 0.00 4.02
214 231 2.418471 GGAGATCTGTGAGCTTGGTGAG 60.418 54.545 0.00 0.00 0.00 3.51
215 232 2.495270 GAGATCTGTGAGCTTGGTGAGA 59.505 50.000 0.00 0.00 0.00 3.27
216 233 2.233431 AGATCTGTGAGCTTGGTGAGAC 59.767 50.000 0.00 0.00 0.00 3.36
217 234 1.413118 TCTGTGAGCTTGGTGAGACA 58.587 50.000 0.00 0.00 0.00 3.41
218 235 1.342496 TCTGTGAGCTTGGTGAGACAG 59.658 52.381 0.00 0.00 33.59 3.51
219 236 1.069823 CTGTGAGCTTGGTGAGACAGT 59.930 52.381 0.00 0.00 0.00 3.55
220 237 1.202568 TGTGAGCTTGGTGAGACAGTG 60.203 52.381 0.00 0.00 0.00 3.66
221 238 1.123077 TGAGCTTGGTGAGACAGTGT 58.877 50.000 0.00 0.00 0.00 3.55
222 239 1.486310 TGAGCTTGGTGAGACAGTGTT 59.514 47.619 0.00 0.00 0.00 3.32
223 240 1.869767 GAGCTTGGTGAGACAGTGTTG 59.130 52.381 0.00 0.00 0.00 3.33
224 241 1.210478 AGCTTGGTGAGACAGTGTTGT 59.790 47.619 0.00 0.00 41.18 3.32
225 242 2.017049 GCTTGGTGAGACAGTGTTGTT 58.983 47.619 0.00 0.00 37.76 2.83
226 243 2.223340 GCTTGGTGAGACAGTGTTGTTG 60.223 50.000 0.00 0.00 37.76 3.33
227 244 1.378531 TGGTGAGACAGTGTTGTTGC 58.621 50.000 0.00 0.00 37.76 4.17
228 245 0.304705 GGTGAGACAGTGTTGTTGCG 59.695 55.000 0.00 0.00 37.76 4.85
229 246 1.286501 GTGAGACAGTGTTGTTGCGA 58.713 50.000 0.00 0.00 37.76 5.10
230 247 1.258982 GTGAGACAGTGTTGTTGCGAG 59.741 52.381 0.00 0.00 37.76 5.03
231 248 0.861837 GAGACAGTGTTGTTGCGAGG 59.138 55.000 0.00 0.00 37.76 4.63
232 249 1.160329 AGACAGTGTTGTTGCGAGGC 61.160 55.000 0.00 0.00 37.76 4.70
233 250 1.436195 GACAGTGTTGTTGCGAGGCA 61.436 55.000 0.00 0.00 37.76 4.75
234 251 1.009675 CAGTGTTGTTGCGAGGCAC 60.010 57.895 0.00 0.00 38.71 5.01
235 252 1.451207 AGTGTTGTTGCGAGGCACA 60.451 52.632 0.00 0.00 38.71 4.57
236 253 1.298339 GTGTTGTTGCGAGGCACAC 60.298 57.895 0.00 0.00 38.71 3.82
237 254 1.746991 TGTTGTTGCGAGGCACACA 60.747 52.632 0.00 0.00 38.71 3.72
238 255 1.308783 TGTTGTTGCGAGGCACACAA 61.309 50.000 11.50 11.50 38.71 3.33
239 256 0.865639 GTTGTTGCGAGGCACACAAC 60.866 55.000 21.15 21.15 44.22 3.32
240 257 2.052237 GTTGCGAGGCACACAACG 60.052 61.111 0.27 0.00 38.71 4.10
241 258 2.202946 TTGCGAGGCACACAACGA 60.203 55.556 0.00 0.00 38.71 3.85
242 259 2.530497 TTGCGAGGCACACAACGAC 61.530 57.895 0.00 0.00 38.71 4.34
243 260 2.661866 GCGAGGCACACAACGACT 60.662 61.111 0.00 0.00 0.00 4.18
244 261 2.943345 GCGAGGCACACAACGACTG 61.943 63.158 0.00 0.00 0.00 3.51
245 262 2.939022 GAGGCACACAACGACTGC 59.061 61.111 0.00 0.00 0.00 4.40
246 263 1.595382 GAGGCACACAACGACTGCT 60.595 57.895 0.00 0.00 0.00 4.24
247 264 0.319555 GAGGCACACAACGACTGCTA 60.320 55.000 0.00 0.00 0.00 3.49
248 265 0.600255 AGGCACACAACGACTGCTAC 60.600 55.000 0.00 0.00 0.00 3.58
249 266 1.487231 GCACACAACGACTGCTACG 59.513 57.895 0.00 0.00 0.00 3.51
250 267 0.937699 GCACACAACGACTGCTACGA 60.938 55.000 0.00 0.00 34.70 3.43
251 268 1.053048 CACACAACGACTGCTACGAG 58.947 55.000 0.00 0.00 34.70 4.18
252 269 0.039437 ACACAACGACTGCTACGAGG 60.039 55.000 0.00 0.00 34.70 4.63
253 270 0.240145 CACAACGACTGCTACGAGGA 59.760 55.000 0.00 0.00 34.70 3.71
254 271 1.135373 CACAACGACTGCTACGAGGAT 60.135 52.381 0.00 0.00 34.70 3.24
255 272 1.135373 ACAACGACTGCTACGAGGATG 60.135 52.381 0.00 0.00 34.70 3.51
256 273 1.132453 CAACGACTGCTACGAGGATGA 59.868 52.381 0.00 0.00 34.70 2.92
257 274 0.733729 ACGACTGCTACGAGGATGAC 59.266 55.000 0.00 0.00 34.70 3.06
258 275 0.316278 CGACTGCTACGAGGATGACG 60.316 60.000 0.00 0.00 0.00 4.35
259 276 0.029567 GACTGCTACGAGGATGACGG 59.970 60.000 0.00 0.00 34.93 4.79
260 277 1.299468 CTGCTACGAGGATGACGGC 60.299 63.158 0.00 0.00 34.93 5.68
261 278 2.027751 GCTACGAGGATGACGGCC 59.972 66.667 0.00 0.00 34.93 6.13
262 279 2.782222 GCTACGAGGATGACGGCCA 61.782 63.158 2.24 0.00 34.93 5.36
263 280 1.065928 CTACGAGGATGACGGCCAC 59.934 63.158 2.24 0.00 34.93 5.01
264 281 2.351336 CTACGAGGATGACGGCCACC 62.351 65.000 2.24 0.00 34.93 4.61
265 282 4.530857 CGAGGATGACGGCCACCC 62.531 72.222 2.24 0.00 0.00 4.61
266 283 3.399181 GAGGATGACGGCCACCCA 61.399 66.667 2.24 0.00 0.00 4.51
267 284 2.933287 AGGATGACGGCCACCCAA 60.933 61.111 2.24 0.00 0.00 4.12
268 285 2.270874 GAGGATGACGGCCACCCAAT 62.271 60.000 2.24 0.00 0.00 3.16
269 286 1.379843 GGATGACGGCCACCCAATT 60.380 57.895 2.24 0.00 0.00 2.32
270 287 1.384222 GGATGACGGCCACCCAATTC 61.384 60.000 2.24 0.00 0.00 2.17
271 288 0.679640 GATGACGGCCACCCAATTCA 60.680 55.000 2.24 0.00 0.00 2.57
272 289 0.033208 ATGACGGCCACCCAATTCAT 60.033 50.000 2.24 0.00 0.00 2.57
273 290 0.621082 TGACGGCCACCCAATTCATA 59.379 50.000 2.24 0.00 0.00 2.15
274 291 1.308998 GACGGCCACCCAATTCATAG 58.691 55.000 2.24 0.00 0.00 2.23
275 292 0.106719 ACGGCCACCCAATTCATAGG 60.107 55.000 2.24 0.00 0.00 2.57
276 293 0.106719 CGGCCACCCAATTCATAGGT 60.107 55.000 2.24 0.00 0.00 3.08
281 298 3.508744 CACCCAATTCATAGGTGTTGC 57.491 47.619 0.18 0.00 44.95 4.17
282 299 2.824936 CACCCAATTCATAGGTGTTGCA 59.175 45.455 0.18 0.00 44.95 4.08
283 300 3.257873 CACCCAATTCATAGGTGTTGCAA 59.742 43.478 0.00 0.00 44.95 4.08
284 301 4.081531 CACCCAATTCATAGGTGTTGCAAT 60.082 41.667 0.59 0.00 44.95 3.56
285 302 4.531732 ACCCAATTCATAGGTGTTGCAATT 59.468 37.500 0.59 0.00 30.97 2.32
286 303 4.871557 CCCAATTCATAGGTGTTGCAATTG 59.128 41.667 0.59 0.00 33.08 2.32
287 304 4.871557 CCAATTCATAGGTGTTGCAATTGG 59.128 41.667 0.59 4.52 42.19 3.16
288 305 4.741321 ATTCATAGGTGTTGCAATTGGG 57.259 40.909 0.59 0.00 0.00 4.12
289 306 3.448093 TCATAGGTGTTGCAATTGGGA 57.552 42.857 0.59 0.00 0.00 4.37
290 307 3.979911 TCATAGGTGTTGCAATTGGGAT 58.020 40.909 0.59 0.00 0.00 3.85
291 308 4.352009 TCATAGGTGTTGCAATTGGGATT 58.648 39.130 0.59 0.00 0.00 3.01
292 309 4.776837 TCATAGGTGTTGCAATTGGGATTT 59.223 37.500 0.59 0.00 0.00 2.17
293 310 3.405823 AGGTGTTGCAATTGGGATTTG 57.594 42.857 0.59 0.00 0.00 2.32
294 311 2.971330 AGGTGTTGCAATTGGGATTTGA 59.029 40.909 0.59 0.00 0.00 2.69
295 312 3.583966 AGGTGTTGCAATTGGGATTTGAT 59.416 39.130 0.59 0.00 0.00 2.57
296 313 3.685756 GGTGTTGCAATTGGGATTTGATG 59.314 43.478 0.59 0.00 0.00 3.07
297 314 3.685756 GTGTTGCAATTGGGATTTGATGG 59.314 43.478 0.59 0.00 0.00 3.51
298 315 3.581770 TGTTGCAATTGGGATTTGATGGA 59.418 39.130 0.59 0.00 0.00 3.41
299 316 4.225492 TGTTGCAATTGGGATTTGATGGAT 59.775 37.500 0.59 0.00 0.00 3.41
300 317 5.187687 GTTGCAATTGGGATTTGATGGATT 58.812 37.500 0.59 0.00 0.00 3.01
301 318 4.771903 TGCAATTGGGATTTGATGGATTG 58.228 39.130 7.72 0.00 0.00 2.67
302 319 3.562557 GCAATTGGGATTTGATGGATTGC 59.437 43.478 7.72 0.00 40.42 3.56
303 320 4.771903 CAATTGGGATTTGATGGATTGCA 58.228 39.130 0.00 0.00 0.00 4.08
304 321 5.186942 CAATTGGGATTTGATGGATTGCAA 58.813 37.500 0.00 0.00 0.00 4.08
305 322 5.640158 ATTGGGATTTGATGGATTGCAAT 57.360 34.783 12.83 12.83 0.00 3.56
306 323 4.409718 TGGGATTTGATGGATTGCAATG 57.590 40.909 18.59 0.00 0.00 2.82
307 324 3.775866 TGGGATTTGATGGATTGCAATGT 59.224 39.130 18.59 2.18 0.00 2.71
308 325 4.141892 TGGGATTTGATGGATTGCAATGTC 60.142 41.667 18.59 12.25 0.00 3.06
309 326 4.046462 GGATTTGATGGATTGCAATGTCG 58.954 43.478 18.59 0.00 0.00 4.35
310 327 4.202040 GGATTTGATGGATTGCAATGTCGA 60.202 41.667 18.59 9.04 0.00 4.20
311 328 4.987408 TTTGATGGATTGCAATGTCGAT 57.013 36.364 18.59 6.98 0.00 3.59
312 329 3.974871 TGATGGATTGCAATGTCGATG 57.025 42.857 18.59 0.00 0.00 3.84
313 330 3.543665 TGATGGATTGCAATGTCGATGA 58.456 40.909 18.59 0.00 0.00 2.92
314 331 4.139038 TGATGGATTGCAATGTCGATGAT 58.861 39.130 18.59 0.00 0.00 2.45
315 332 3.974871 TGGATTGCAATGTCGATGATG 57.025 42.857 18.59 0.00 0.00 3.07
316 333 2.033675 TGGATTGCAATGTCGATGATGC 59.966 45.455 18.59 11.05 39.22 3.91
317 334 2.292569 GGATTGCAATGTCGATGATGCT 59.707 45.455 18.59 0.00 39.49 3.79
318 335 3.243301 GGATTGCAATGTCGATGATGCTT 60.243 43.478 18.59 7.53 39.49 3.91
319 336 3.409851 TTGCAATGTCGATGATGCTTC 57.590 42.857 16.66 0.00 39.49 3.86
320 337 2.635714 TGCAATGTCGATGATGCTTCT 58.364 42.857 16.66 0.00 39.49 2.85
321 338 2.353579 TGCAATGTCGATGATGCTTCTG 59.646 45.455 16.66 0.00 39.49 3.02
322 339 2.610833 GCAATGTCGATGATGCTTCTGA 59.389 45.455 10.78 0.00 35.93 3.27
323 340 3.064408 GCAATGTCGATGATGCTTCTGAA 59.936 43.478 10.78 0.00 35.93 3.02
324 341 4.437794 GCAATGTCGATGATGCTTCTGAAA 60.438 41.667 10.78 0.00 35.93 2.69
325 342 4.871993 ATGTCGATGATGCTTCTGAAAC 57.128 40.909 0.88 0.00 0.00 2.78
326 343 3.663025 TGTCGATGATGCTTCTGAAACA 58.337 40.909 0.88 0.00 0.00 2.83
327 344 4.256110 TGTCGATGATGCTTCTGAAACAT 58.744 39.130 6.01 6.01 0.00 2.71
328 345 4.093850 TGTCGATGATGCTTCTGAAACATG 59.906 41.667 10.76 0.00 0.00 3.21
329 346 3.624410 TCGATGATGCTTCTGAAACATGG 59.376 43.478 10.76 6.61 0.00 3.66
330 347 3.376234 CGATGATGCTTCTGAAACATGGT 59.624 43.478 10.76 0.10 0.00 3.55
331 348 4.495349 CGATGATGCTTCTGAAACATGGTC 60.495 45.833 10.76 7.64 0.00 4.02
332 349 3.753815 TGATGCTTCTGAAACATGGTCA 58.246 40.909 10.76 1.88 0.00 4.02
333 350 3.754850 TGATGCTTCTGAAACATGGTCAG 59.245 43.478 18.11 18.11 43.28 3.51
334 351 3.213206 TGCTTCTGAAACATGGTCAGT 57.787 42.857 21.46 0.00 42.63 3.41
335 352 2.880268 TGCTTCTGAAACATGGTCAGTG 59.120 45.455 21.46 17.35 42.63 3.66
336 353 2.880890 GCTTCTGAAACATGGTCAGTGT 59.119 45.455 21.46 0.00 42.63 3.55
337 354 3.316308 GCTTCTGAAACATGGTCAGTGTT 59.684 43.478 21.46 0.00 42.63 3.32
338 355 4.790766 GCTTCTGAAACATGGTCAGTGTTG 60.791 45.833 21.46 13.78 42.63 3.33
339 356 2.618241 TCTGAAACATGGTCAGTGTTGC 59.382 45.455 21.46 0.00 42.63 4.17
340 357 2.358582 CTGAAACATGGTCAGTGTTGCA 59.641 45.455 16.64 0.27 41.60 4.08
341 358 2.757314 TGAAACATGGTCAGTGTTGCAA 59.243 40.909 0.00 0.00 41.07 4.08
342 359 3.384146 TGAAACATGGTCAGTGTTGCAAT 59.616 39.130 0.59 0.00 41.07 3.56
343 360 3.374220 AACATGGTCAGTGTTGCAATG 57.626 42.857 0.59 0.00 38.31 2.82
344 361 2.585330 ACATGGTCAGTGTTGCAATGA 58.415 42.857 0.59 0.00 36.10 2.57
345 362 2.957680 ACATGGTCAGTGTTGCAATGAA 59.042 40.909 0.59 0.00 40.09 2.57
346 363 3.384146 ACATGGTCAGTGTTGCAATGAAA 59.616 39.130 0.59 0.00 40.09 2.69
347 364 3.713858 TGGTCAGTGTTGCAATGAAAG 57.286 42.857 0.59 0.00 40.09 2.62
348 365 3.286353 TGGTCAGTGTTGCAATGAAAGA 58.714 40.909 0.59 0.00 40.09 2.52
349 366 3.316029 TGGTCAGTGTTGCAATGAAAGAG 59.684 43.478 0.59 0.00 40.09 2.85
350 367 3.565482 GGTCAGTGTTGCAATGAAAGAGA 59.435 43.478 0.59 0.00 40.09 3.10
351 368 4.531332 GTCAGTGTTGCAATGAAAGAGAC 58.469 43.478 0.59 1.72 40.09 3.36
352 369 3.248363 TCAGTGTTGCAATGAAAGAGACG 59.752 43.478 0.59 0.00 35.53 4.18
353 370 3.248363 CAGTGTTGCAATGAAAGAGACGA 59.752 43.478 0.59 0.00 30.53 4.20
354 371 3.496130 AGTGTTGCAATGAAAGAGACGAG 59.504 43.478 0.59 0.00 0.00 4.18
355 372 2.807967 TGTTGCAATGAAAGAGACGAGG 59.192 45.455 0.59 0.00 0.00 4.63
356 373 2.099141 TGCAATGAAAGAGACGAGGG 57.901 50.000 0.00 0.00 0.00 4.30
357 374 1.623311 TGCAATGAAAGAGACGAGGGA 59.377 47.619 0.00 0.00 0.00 4.20
358 375 2.038426 TGCAATGAAAGAGACGAGGGAA 59.962 45.455 0.00 0.00 0.00 3.97
359 376 3.074412 GCAATGAAAGAGACGAGGGAAA 58.926 45.455 0.00 0.00 0.00 3.13
360 377 3.120165 GCAATGAAAGAGACGAGGGAAAC 60.120 47.826 0.00 0.00 0.00 2.78
361 378 4.065088 CAATGAAAGAGACGAGGGAAACA 58.935 43.478 0.00 0.00 0.00 2.83
362 379 3.107642 TGAAAGAGACGAGGGAAACAC 57.892 47.619 0.00 0.00 0.00 3.32
363 380 2.698797 TGAAAGAGACGAGGGAAACACT 59.301 45.455 0.00 0.00 0.00 3.55
364 381 2.821991 AAGAGACGAGGGAAACACTG 57.178 50.000 0.00 0.00 0.00 3.66
365 382 0.969894 AGAGACGAGGGAAACACTGG 59.030 55.000 0.00 0.00 0.00 4.00
366 383 0.966920 GAGACGAGGGAAACACTGGA 59.033 55.000 0.00 0.00 0.00 3.86
367 384 0.969894 AGACGAGGGAAACACTGGAG 59.030 55.000 0.00 0.00 0.00 3.86
368 385 0.670854 GACGAGGGAAACACTGGAGC 60.671 60.000 0.00 0.00 0.00 4.70
369 386 1.376037 CGAGGGAAACACTGGAGCC 60.376 63.158 0.00 0.00 0.00 4.70
370 387 1.376037 GAGGGAAACACTGGAGCCG 60.376 63.158 0.00 0.00 0.00 5.52
371 388 3.056328 GGGAAACACTGGAGCCGC 61.056 66.667 0.00 0.00 0.00 6.53
372 389 2.032681 GGAAACACTGGAGCCGCT 59.967 61.111 0.00 0.00 0.00 5.52
373 390 1.600916 GGAAACACTGGAGCCGCTT 60.601 57.895 0.00 0.00 0.00 4.68
374 391 1.576421 GAAACACTGGAGCCGCTTG 59.424 57.895 0.00 0.00 0.00 4.01
375 392 0.884704 GAAACACTGGAGCCGCTTGA 60.885 55.000 0.00 0.00 0.00 3.02
376 393 0.250901 AAACACTGGAGCCGCTTGAT 60.251 50.000 0.00 0.00 0.00 2.57
377 394 0.957395 AACACTGGAGCCGCTTGATG 60.957 55.000 0.00 0.00 0.00 3.07
378 395 2.110967 CACTGGAGCCGCTTGATGG 61.111 63.158 0.00 0.00 0.00 3.51
388 405 2.006888 CCGCTTGATGGATTACAACGT 58.993 47.619 0.00 0.00 0.00 3.99
393 410 4.873827 GCTTGATGGATTACAACGTCCTTA 59.126 41.667 0.00 0.00 35.49 2.69
399 416 7.392113 TGATGGATTACAACGTCCTTAATGTTT 59.608 33.333 0.00 0.00 34.80 2.83
447 465 4.348857 AAAAACGGTCCGACGGAG 57.651 55.556 18.98 9.40 38.39 4.63
448 466 1.741525 AAAAACGGTCCGACGGAGA 59.258 52.632 18.98 0.00 38.39 3.71
449 467 0.319297 AAAAACGGTCCGACGGAGAG 60.319 55.000 18.98 16.46 38.39 3.20
450 468 2.760387 AAAACGGTCCGACGGAGAGC 62.760 60.000 18.98 5.54 38.39 4.09
454 472 4.415332 GTCCGACGGAGAGCGCAA 62.415 66.667 18.98 0.00 29.39 4.85
455 473 4.415332 TCCGACGGAGAGCGCAAC 62.415 66.667 13.88 2.78 0.00 4.17
472 490 2.806608 AACAGGCTCATGTTGCAAAG 57.193 45.000 0.00 0.00 41.76 2.77
473 491 0.316204 ACAGGCTCATGTTGCAAAGC 59.684 50.000 11.60 11.60 0.00 3.51
474 492 0.731514 CAGGCTCATGTTGCAAAGCG 60.732 55.000 13.25 0.02 35.58 4.68
475 493 2.090524 GGCTCATGTTGCAAAGCGC 61.091 57.895 13.25 0.00 42.89 5.92
476 494 2.090524 GCTCATGTTGCAAAGCGCC 61.091 57.895 2.29 0.00 41.33 6.53
477 495 1.286570 CTCATGTTGCAAAGCGCCA 59.713 52.632 2.29 0.00 41.33 5.69
478 496 0.318869 CTCATGTTGCAAAGCGCCAA 60.319 50.000 2.29 0.00 41.33 4.52
479 497 0.318869 TCATGTTGCAAAGCGCCAAG 60.319 50.000 2.29 0.00 41.33 3.61
511 529 2.146073 CTTGTTGCAAAGGAGGGCGG 62.146 60.000 0.00 0.00 0.00 6.13
513 531 2.597217 TTGCAAAGGAGGGCGGTG 60.597 61.111 0.00 0.00 0.00 4.94
527 549 2.710902 CGGTGCCGTGGAGAGATCA 61.711 63.158 1.93 0.00 34.35 2.92
536 558 0.748367 TGGAGAGATCAGACCGGACG 60.748 60.000 9.46 0.00 0.00 4.79
537 559 0.748729 GGAGAGATCAGACCGGACGT 60.749 60.000 9.46 0.00 0.00 4.34
542 564 0.248539 GATCAGACCGGACGTGTAGC 60.249 60.000 9.46 0.00 0.00 3.58
546 568 3.621892 GACCGGACGTGTAGCGCTT 62.622 63.158 18.68 0.00 46.11 4.68
550 572 2.572284 GACGTGTAGCGCTTCCCT 59.428 61.111 18.68 0.00 46.11 4.20
555 578 2.428171 ACGTGTAGCGCTTCCCTAATTA 59.572 45.455 18.68 0.00 46.11 1.40
570 593 9.326413 CTTCCCTAATTATGAGAACACGTTAAT 57.674 33.333 0.00 0.00 0.00 1.40
572 595 9.754382 TCCCTAATTATGAGAACACGTTAATAC 57.246 33.333 0.00 0.00 0.00 1.89
573 596 9.537192 CCCTAATTATGAGAACACGTTAATACA 57.463 33.333 0.00 0.00 0.00 2.29
581 604 5.049167 AGAACACGTTAATACAACCAACGA 58.951 37.500 12.43 0.00 45.92 3.85
582 605 4.713854 ACACGTTAATACAACCAACGAC 57.286 40.909 12.43 0.00 45.92 4.34
584 607 3.424861 CACGTTAATACAACCAACGACGA 59.575 43.478 12.43 0.00 45.92 4.20
585 608 4.047822 ACGTTAATACAACCAACGACGAA 58.952 39.130 12.43 0.00 45.92 3.85
586 609 4.085107 ACGTTAATACAACCAACGACGAAC 60.085 41.667 12.43 0.00 45.92 3.95
587 610 4.663889 CGTTAATACAACCAACGACGAACC 60.664 45.833 0.00 0.00 45.92 3.62
588 611 2.529780 ATACAACCAACGACGAACCA 57.470 45.000 0.00 0.00 0.00 3.67
590 613 0.728542 ACAACCAACGACGAACCAAC 59.271 50.000 0.00 0.00 0.00 3.77
591 614 0.028374 CAACCAACGACGAACCAACC 59.972 55.000 0.00 0.00 0.00 3.77
592 615 0.392729 AACCAACGACGAACCAACCA 60.393 50.000 0.00 0.00 0.00 3.67
593 616 0.812412 ACCAACGACGAACCAACCAG 60.812 55.000 0.00 0.00 0.00 4.00
594 617 0.812412 CCAACGACGAACCAACCAGT 60.812 55.000 0.00 0.00 0.00 4.00
596 619 0.108041 AACGACGAACCAACCAGTGT 60.108 50.000 0.00 0.00 0.00 3.55
597 620 0.108041 ACGACGAACCAACCAGTGTT 60.108 50.000 0.00 0.00 34.14 3.32
613 636 3.009033 CAGTGTTTGGATGGTTAGAGGGA 59.991 47.826 0.00 0.00 0.00 4.20
616 639 3.009033 TGTTTGGATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
617 640 2.642171 TGGATGGTTAGAGGGACTGT 57.358 50.000 0.00 0.00 41.55 3.55
618 641 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
621 644 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
622 645 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
623 646 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
624 647 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
634 657 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
635 658 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
636 659 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
637 660 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
647 670 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
648 671 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
649 672 0.036875 CCACCAGGGTTCAAGTCCTC 59.963 60.000 0.00 0.00 0.00 3.71
652 675 1.059913 CCAGGGTTCAAGTCCTCTGT 58.940 55.000 0.00 0.00 0.00 3.41
654 677 2.551071 CCAGGGTTCAAGTCCTCTGTTC 60.551 54.545 0.00 0.00 0.00 3.18
655 678 1.344763 AGGGTTCAAGTCCTCTGTTCG 59.655 52.381 0.00 0.00 0.00 3.95
656 679 1.070289 GGGTTCAAGTCCTCTGTTCGT 59.930 52.381 0.00 0.00 0.00 3.85
657 680 2.298163 GGGTTCAAGTCCTCTGTTCGTA 59.702 50.000 0.00 0.00 0.00 3.43
659 682 4.374399 GGTTCAAGTCCTCTGTTCGTAAA 58.626 43.478 0.00 0.00 0.00 2.01
660 683 4.995487 GGTTCAAGTCCTCTGTTCGTAAAT 59.005 41.667 0.00 0.00 0.00 1.40
662 685 6.090493 GGTTCAAGTCCTCTGTTCGTAAATAC 59.910 42.308 0.00 0.00 0.00 1.89
663 686 6.585695 TCAAGTCCTCTGTTCGTAAATACT 57.414 37.500 0.00 0.00 0.00 2.12
664 687 6.989659 TCAAGTCCTCTGTTCGTAAATACTT 58.010 36.000 0.00 0.00 0.00 2.24
665 688 6.866770 TCAAGTCCTCTGTTCGTAAATACTTG 59.133 38.462 0.00 0.00 41.50 3.16
666 689 6.342338 AGTCCTCTGTTCGTAAATACTTGT 57.658 37.500 0.00 0.00 0.00 3.16
668 691 6.645415 AGTCCTCTGTTCGTAAATACTTGTTG 59.355 38.462 0.00 0.00 0.00 3.33
672 717 7.041644 CCTCTGTTCGTAAATACTTGTTGGAAA 60.042 37.037 0.00 0.00 0.00 3.13
676 721 9.239002 TGTTCGTAAATACTTGTTGGAAAAATG 57.761 29.630 0.00 0.00 0.00 2.32
754 935 3.007182 ACAAGTATTTTCGGACGAGGGAA 59.993 43.478 0.00 0.00 0.00 3.97
756 937 2.830321 AGTATTTTCGGACGAGGGAAGT 59.170 45.455 0.00 0.00 0.00 3.01
757 938 4.019174 AGTATTTTCGGACGAGGGAAGTA 58.981 43.478 0.00 0.00 0.00 2.24
771 952 4.848357 AGGGAAGTACAACCAATGATGAG 58.152 43.478 9.85 0.00 0.00 2.90
775 956 1.064060 GTACAACCAATGATGAGCGGC 59.936 52.381 0.00 0.00 0.00 6.53
781 962 0.591659 CAATGATGAGCGGCTGGATG 59.408 55.000 7.50 0.00 0.00 3.51
783 964 0.691332 ATGATGAGCGGCTGGATGAT 59.309 50.000 7.50 0.00 0.00 2.45
784 965 0.471191 TGATGAGCGGCTGGATGATT 59.529 50.000 7.50 0.00 0.00 2.57
807 988 2.581354 CCTTCCTCTGCCGGACTG 59.419 66.667 5.05 0.34 31.44 3.51
849 1038 1.737363 GCTTCACTTCCGAATCGAGCT 60.737 52.381 3.36 0.00 0.00 4.09
851 1040 1.173913 TCACTTCCGAATCGAGCTCA 58.826 50.000 15.40 1.08 0.00 4.26
895 1084 3.523564 ACCTTCCTGCTATAAAAGGAGCA 59.476 43.478 6.98 0.00 46.24 4.26
909 1098 3.537206 GAGCACCAGACCCGCAAGT 62.537 63.158 0.00 0.00 0.00 3.16
912 1101 1.736645 CACCAGACCCGCAAGTACG 60.737 63.158 0.00 0.00 0.00 3.67
918 1107 2.200170 GACCCGCAAGTACGTACCGT 62.200 60.000 21.80 7.88 44.35 4.83
967 1156 0.992695 GGCCCTAGACCCTGTTCTTT 59.007 55.000 0.00 0.00 0.00 2.52
975 1164 1.172812 ACCCTGTTCTTTTCCGCAGC 61.173 55.000 0.00 0.00 0.00 5.25
1536 1782 2.172372 CGAGGAGGACGACGACGAT 61.172 63.158 15.32 0.00 42.66 3.73
1539 1785 0.675837 AGGAGGACGACGACGATGAA 60.676 55.000 15.32 0.00 42.66 2.57
1629 1882 2.917227 TCGTCCCTGCTGCTGTCA 60.917 61.111 0.00 0.00 0.00 3.58
1678 1931 2.033602 TCACGGAGGAGCACGAGA 59.966 61.111 0.00 0.00 0.00 4.04
1933 2189 0.460109 GCCCGATTGGATTGCAAACC 60.460 55.000 18.32 18.32 37.49 3.27
1942 2198 3.760738 TGGATTGCAAACCTGTGATGTA 58.239 40.909 24.33 0.92 0.00 2.29
1944 2200 4.586421 TGGATTGCAAACCTGTGATGTAAA 59.414 37.500 24.33 0.00 0.00 2.01
1946 2202 5.577945 GGATTGCAAACCTGTGATGTAAATG 59.422 40.000 17.92 0.00 0.00 2.32
1947 2203 5.781210 TTGCAAACCTGTGATGTAAATGA 57.219 34.783 0.00 0.00 0.00 2.57
1959 2215 7.604549 TGTGATGTAAATGATGATTGCAAACT 58.395 30.769 1.71 0.00 0.00 2.66
1962 2229 8.525316 TGATGTAAATGATGATTGCAAACTCTT 58.475 29.630 1.71 0.00 0.00 2.85
1967 2234 6.822667 ATGATGATTGCAAACTCTTGTGTA 57.177 33.333 1.71 0.00 34.79 2.90
2097 2384 7.303634 ACAATAGCCGAAGTAAATGTTAGTG 57.696 36.000 0.00 0.00 0.00 2.74
2103 2390 6.313905 AGCCGAAGTAAATGTTAGTGAAGATG 59.686 38.462 0.00 0.00 0.00 2.90
2118 2405 3.681417 TGAAGATGTGTTGATCTCTTGCG 59.319 43.478 0.00 0.00 31.07 4.85
2120 2407 3.519579 AGATGTGTTGATCTCTTGCGAG 58.480 45.455 0.00 0.00 38.67 5.03
2149 2436 7.621633 GCATGTGATGATCTTGATCTGTTATCG 60.622 40.741 11.31 0.00 0.00 2.92
2172 2459 9.716507 ATCGAAATCATAAGAATTTGTTTACCG 57.283 29.630 0.00 0.00 0.00 4.02
2173 2460 8.723311 TCGAAATCATAAGAATTTGTTTACCGT 58.277 29.630 0.00 0.00 0.00 4.83
2189 2476 6.368791 TGTTTACCGTTTTCTCTGATGATGAG 59.631 38.462 0.00 0.00 0.00 2.90
2190 2477 3.866651 ACCGTTTTCTCTGATGATGAGG 58.133 45.455 0.00 0.00 32.78 3.86
2192 2479 3.264947 CGTTTTCTCTGATGATGAGGCA 58.735 45.455 0.00 0.00 32.78 4.75
2194 2481 4.154737 CGTTTTCTCTGATGATGAGGCAAA 59.845 41.667 0.00 0.00 32.78 3.68
2195 2482 5.163683 CGTTTTCTCTGATGATGAGGCAAAT 60.164 40.000 0.00 0.00 32.78 2.32
2196 2483 6.264088 GTTTTCTCTGATGATGAGGCAAATC 58.736 40.000 0.00 0.00 32.78 2.17
2197 2484 4.765813 TCTCTGATGATGAGGCAAATCA 57.234 40.909 4.82 4.82 38.37 2.57
2198 2485 4.449131 TCTCTGATGATGAGGCAAATCAC 58.551 43.478 4.49 1.37 36.89 3.06
2199 2486 4.163649 TCTCTGATGATGAGGCAAATCACT 59.836 41.667 4.49 0.00 36.89 3.41
2200 2487 5.364735 TCTCTGATGATGAGGCAAATCACTA 59.635 40.000 4.49 0.00 36.89 2.74
2201 2488 5.608449 TCTGATGATGAGGCAAATCACTAG 58.392 41.667 4.49 6.42 36.89 2.57
2202 2489 5.364735 TCTGATGATGAGGCAAATCACTAGA 59.635 40.000 0.00 8.20 36.89 2.43
2203 2490 5.993055 TGATGATGAGGCAAATCACTAGAA 58.007 37.500 0.00 0.00 36.89 2.10
2204 2491 6.598503 TGATGATGAGGCAAATCACTAGAAT 58.401 36.000 0.00 0.00 36.89 2.40
2205 2492 7.738847 TGATGATGAGGCAAATCACTAGAATA 58.261 34.615 0.00 0.00 36.89 1.75
2206 2493 7.658982 TGATGATGAGGCAAATCACTAGAATAC 59.341 37.037 0.00 0.00 36.89 1.89
2210 2497 6.472016 TGAGGCAAATCACTAGAATACACAA 58.528 36.000 0.00 0.00 0.00 3.33
2230 2517 4.082408 ACAACTGGCAAGAATGTGATGATG 60.082 41.667 0.00 0.00 0.00 3.07
2244 2808 4.277423 TGTGATGATGATGTGATGGATTGC 59.723 41.667 0.00 0.00 0.00 3.56
2527 3092 5.779241 TCAAGAAAGTAGAATCCCCACAT 57.221 39.130 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.176798 AGATGAGTGTCTAGAGGGAGGG 59.823 54.545 0.00 0.00 0.00 4.30
9 10 4.023279 CGAATGAGATGAGTGTCTAGAGGG 60.023 50.000 0.00 0.00 0.00 4.30
15 16 2.428890 GGGACGAATGAGATGAGTGTCT 59.571 50.000 0.00 0.00 0.00 3.41
16 17 2.166459 TGGGACGAATGAGATGAGTGTC 59.834 50.000 0.00 0.00 0.00 3.67
53 54 1.672030 CGATGGCAGCAGTGGTCAA 60.672 57.895 2.73 0.00 0.00 3.18
66 70 1.007964 CGAGGCTGTAGCTCGATGG 60.008 63.158 15.64 0.00 41.04 3.51
85 89 2.319032 CTCTTTGCATCGCGCGAG 59.681 61.111 36.99 27.54 46.97 5.03
106 110 1.177401 GGCAAAGAGTCCATGGTTCC 58.823 55.000 12.58 0.98 0.00 3.62
130 147 3.818787 CACAAGCTGCCCCGATGC 61.819 66.667 0.00 0.00 0.00 3.91
135 152 3.818787 CGCATCACAAGCTGCCCC 61.819 66.667 0.00 0.00 33.44 5.80
173 190 2.555199 CGCATCCCTCCTTTCAAGTAG 58.445 52.381 0.00 0.00 0.00 2.57
174 191 1.209504 CCGCATCCCTCCTTTCAAGTA 59.790 52.381 0.00 0.00 0.00 2.24
175 192 0.035056 CCGCATCCCTCCTTTCAAGT 60.035 55.000 0.00 0.00 0.00 3.16
176 193 0.253044 TCCGCATCCCTCCTTTCAAG 59.747 55.000 0.00 0.00 0.00 3.02
177 194 0.253044 CTCCGCATCCCTCCTTTCAA 59.747 55.000 0.00 0.00 0.00 2.69
178 195 0.617535 TCTCCGCATCCCTCCTTTCA 60.618 55.000 0.00 0.00 0.00 2.69
179 196 0.761802 ATCTCCGCATCCCTCCTTTC 59.238 55.000 0.00 0.00 0.00 2.62
180 197 0.761802 GATCTCCGCATCCCTCCTTT 59.238 55.000 0.00 0.00 0.00 3.11
181 198 0.105246 AGATCTCCGCATCCCTCCTT 60.105 55.000 0.00 0.00 0.00 3.36
182 199 0.831288 CAGATCTCCGCATCCCTCCT 60.831 60.000 0.00 0.00 0.00 3.69
183 200 1.118356 ACAGATCTCCGCATCCCTCC 61.118 60.000 0.00 0.00 0.00 4.30
184 201 0.033228 CACAGATCTCCGCATCCCTC 59.967 60.000 0.00 0.00 0.00 4.30
185 202 0.397675 TCACAGATCTCCGCATCCCT 60.398 55.000 0.00 0.00 0.00 4.20
186 203 0.033228 CTCACAGATCTCCGCATCCC 59.967 60.000 0.00 0.00 0.00 3.85
187 204 0.599728 GCTCACAGATCTCCGCATCC 60.600 60.000 0.00 0.00 0.00 3.51
188 205 0.388659 AGCTCACAGATCTCCGCATC 59.611 55.000 0.00 0.00 0.00 3.91
189 206 0.829333 AAGCTCACAGATCTCCGCAT 59.171 50.000 0.00 0.00 0.00 4.73
190 207 0.108472 CAAGCTCACAGATCTCCGCA 60.108 55.000 0.00 0.00 0.00 5.69
191 208 0.809241 CCAAGCTCACAGATCTCCGC 60.809 60.000 0.00 0.00 0.00 5.54
192 209 0.534412 ACCAAGCTCACAGATCTCCG 59.466 55.000 0.00 0.00 0.00 4.63
193 210 1.552337 TCACCAAGCTCACAGATCTCC 59.448 52.381 0.00 0.00 0.00 3.71
194 211 2.495270 TCTCACCAAGCTCACAGATCTC 59.505 50.000 0.00 0.00 0.00 2.75
195 212 2.233431 GTCTCACCAAGCTCACAGATCT 59.767 50.000 0.00 0.00 0.00 2.75
196 213 2.028658 TGTCTCACCAAGCTCACAGATC 60.029 50.000 0.00 0.00 0.00 2.75
197 214 1.973515 TGTCTCACCAAGCTCACAGAT 59.026 47.619 0.00 0.00 0.00 2.90
198 215 1.342496 CTGTCTCACCAAGCTCACAGA 59.658 52.381 0.00 0.00 31.91 3.41
199 216 1.069823 ACTGTCTCACCAAGCTCACAG 59.930 52.381 0.00 0.00 34.86 3.66
200 217 1.123077 ACTGTCTCACCAAGCTCACA 58.877 50.000 0.00 0.00 0.00 3.58
201 218 1.202580 ACACTGTCTCACCAAGCTCAC 60.203 52.381 0.00 0.00 0.00 3.51
202 219 1.123077 ACACTGTCTCACCAAGCTCA 58.877 50.000 0.00 0.00 0.00 4.26
203 220 1.869767 CAACACTGTCTCACCAAGCTC 59.130 52.381 0.00 0.00 0.00 4.09
204 221 1.210478 ACAACACTGTCTCACCAAGCT 59.790 47.619 0.00 0.00 0.00 3.74
205 222 1.668419 ACAACACTGTCTCACCAAGC 58.332 50.000 0.00 0.00 0.00 4.01
206 223 2.223340 GCAACAACACTGTCTCACCAAG 60.223 50.000 0.00 0.00 33.45 3.61
207 224 1.742831 GCAACAACACTGTCTCACCAA 59.257 47.619 0.00 0.00 33.45 3.67
208 225 1.378531 GCAACAACACTGTCTCACCA 58.621 50.000 0.00 0.00 33.45 4.17
209 226 0.304705 CGCAACAACACTGTCTCACC 59.695 55.000 0.00 0.00 33.45 4.02
210 227 1.258982 CTCGCAACAACACTGTCTCAC 59.741 52.381 0.00 0.00 33.45 3.51
211 228 1.570813 CTCGCAACAACACTGTCTCA 58.429 50.000 0.00 0.00 33.45 3.27
212 229 0.861837 CCTCGCAACAACACTGTCTC 59.138 55.000 0.00 0.00 33.45 3.36
213 230 1.160329 GCCTCGCAACAACACTGTCT 61.160 55.000 0.00 0.00 33.45 3.41
214 231 1.279840 GCCTCGCAACAACACTGTC 59.720 57.895 0.00 0.00 33.45 3.51
215 232 1.451207 TGCCTCGCAACAACACTGT 60.451 52.632 0.00 0.00 34.76 3.55
216 233 1.009675 GTGCCTCGCAACAACACTG 60.010 57.895 0.00 0.00 41.47 3.66
217 234 1.451207 TGTGCCTCGCAACAACACT 60.451 52.632 0.00 0.00 41.47 3.55
218 235 1.298339 GTGTGCCTCGCAACAACAC 60.298 57.895 0.00 0.00 41.47 3.32
219 236 1.308783 TTGTGTGCCTCGCAACAACA 61.309 50.000 9.01 3.35 41.47 3.33
220 237 1.431440 TTGTGTGCCTCGCAACAAC 59.569 52.632 9.01 1.30 41.47 3.32
221 238 3.911137 TTGTGTGCCTCGCAACAA 58.089 50.000 9.01 9.01 41.47 2.83
224 241 2.202946 TCGTTGTGTGCCTCGCAA 60.203 55.556 1.73 1.73 41.47 4.85
225 242 2.964925 GTCGTTGTGTGCCTCGCA 60.965 61.111 0.00 0.00 35.60 5.10
226 243 2.661866 AGTCGTTGTGTGCCTCGC 60.662 61.111 0.00 0.00 0.00 5.03
227 244 2.943345 GCAGTCGTTGTGTGCCTCG 61.943 63.158 0.00 0.00 0.00 4.63
228 245 0.319555 TAGCAGTCGTTGTGTGCCTC 60.320 55.000 0.00 0.00 37.98 4.70
229 246 0.600255 GTAGCAGTCGTTGTGTGCCT 60.600 55.000 0.00 0.00 37.98 4.75
230 247 1.860078 GTAGCAGTCGTTGTGTGCC 59.140 57.895 0.00 0.00 37.98 5.01
231 248 0.937699 TCGTAGCAGTCGTTGTGTGC 60.938 55.000 0.00 0.00 37.48 4.57
232 249 1.053048 CTCGTAGCAGTCGTTGTGTG 58.947 55.000 0.00 0.00 0.00 3.82
233 250 0.039437 CCTCGTAGCAGTCGTTGTGT 60.039 55.000 0.00 0.00 0.00 3.72
234 251 0.240145 TCCTCGTAGCAGTCGTTGTG 59.760 55.000 0.00 0.00 0.00 3.33
235 252 1.135373 CATCCTCGTAGCAGTCGTTGT 60.135 52.381 0.00 0.00 0.00 3.32
236 253 1.132453 TCATCCTCGTAGCAGTCGTTG 59.868 52.381 0.00 0.00 0.00 4.10
237 254 1.132643 GTCATCCTCGTAGCAGTCGTT 59.867 52.381 0.00 0.00 0.00 3.85
238 255 0.733729 GTCATCCTCGTAGCAGTCGT 59.266 55.000 0.00 0.00 0.00 4.34
239 256 0.316278 CGTCATCCTCGTAGCAGTCG 60.316 60.000 0.00 0.00 0.00 4.18
240 257 0.029567 CCGTCATCCTCGTAGCAGTC 59.970 60.000 0.00 0.00 0.00 3.51
241 258 2.005960 GCCGTCATCCTCGTAGCAGT 62.006 60.000 0.00 0.00 0.00 4.40
242 259 1.299468 GCCGTCATCCTCGTAGCAG 60.299 63.158 0.00 0.00 0.00 4.24
243 260 2.782222 GGCCGTCATCCTCGTAGCA 61.782 63.158 0.00 0.00 0.00 3.49
244 261 2.027751 GGCCGTCATCCTCGTAGC 59.972 66.667 0.00 0.00 0.00 3.58
245 262 1.065928 GTGGCCGTCATCCTCGTAG 59.934 63.158 0.00 0.00 0.00 3.51
246 263 2.420568 GGTGGCCGTCATCCTCGTA 61.421 63.158 0.00 0.00 0.00 3.43
247 264 3.771160 GGTGGCCGTCATCCTCGT 61.771 66.667 0.00 0.00 0.00 4.18
248 265 4.530857 GGGTGGCCGTCATCCTCG 62.531 72.222 0.00 0.00 43.38 4.63
249 266 2.270874 ATTGGGTGGCCGTCATCCTC 62.271 60.000 3.42 0.00 46.85 3.71
250 267 1.863155 AATTGGGTGGCCGTCATCCT 61.863 55.000 3.42 0.00 46.85 3.24
251 268 1.379843 AATTGGGTGGCCGTCATCC 60.380 57.895 0.00 0.00 46.91 3.51
252 269 0.679640 TGAATTGGGTGGCCGTCATC 60.680 55.000 0.00 0.00 0.00 2.92
253 270 0.033208 ATGAATTGGGTGGCCGTCAT 60.033 50.000 0.00 0.00 0.00 3.06
254 271 0.621082 TATGAATTGGGTGGCCGTCA 59.379 50.000 0.00 0.00 0.00 4.35
255 272 1.308998 CTATGAATTGGGTGGCCGTC 58.691 55.000 0.00 0.00 0.00 4.79
256 273 0.106719 CCTATGAATTGGGTGGCCGT 60.107 55.000 0.00 0.00 0.00 5.68
257 274 0.106719 ACCTATGAATTGGGTGGCCG 60.107 55.000 0.00 0.00 31.48 6.13
258 275 1.402787 CACCTATGAATTGGGTGGCC 58.597 55.000 0.00 0.00 44.63 5.36
262 279 3.168035 TGCAACACCTATGAATTGGGT 57.832 42.857 0.00 0.00 0.00 4.51
263 280 4.741321 ATTGCAACACCTATGAATTGGG 57.259 40.909 0.00 0.00 0.00 4.12
264 281 4.871557 CCAATTGCAACACCTATGAATTGG 59.128 41.667 0.00 3.87 41.87 3.16
265 282 4.871557 CCCAATTGCAACACCTATGAATTG 59.128 41.667 0.00 0.00 32.85 2.32
266 283 4.776837 TCCCAATTGCAACACCTATGAATT 59.223 37.500 0.00 0.00 0.00 2.17
267 284 4.352009 TCCCAATTGCAACACCTATGAAT 58.648 39.130 0.00 0.00 0.00 2.57
268 285 3.772387 TCCCAATTGCAACACCTATGAA 58.228 40.909 0.00 0.00 0.00 2.57
269 286 3.448093 TCCCAATTGCAACACCTATGA 57.552 42.857 0.00 0.00 0.00 2.15
270 287 4.741321 AATCCCAATTGCAACACCTATG 57.259 40.909 0.00 0.00 0.00 2.23
271 288 4.776837 TCAAATCCCAATTGCAACACCTAT 59.223 37.500 0.00 0.00 0.00 2.57
272 289 4.155709 TCAAATCCCAATTGCAACACCTA 58.844 39.130 0.00 0.00 0.00 3.08
273 290 2.971330 TCAAATCCCAATTGCAACACCT 59.029 40.909 0.00 0.00 0.00 4.00
274 291 3.399440 TCAAATCCCAATTGCAACACC 57.601 42.857 0.00 0.00 0.00 4.16
275 292 3.685756 CCATCAAATCCCAATTGCAACAC 59.314 43.478 0.00 0.00 0.00 3.32
276 293 3.581770 TCCATCAAATCCCAATTGCAACA 59.418 39.130 0.00 0.00 0.00 3.33
277 294 4.205065 TCCATCAAATCCCAATTGCAAC 57.795 40.909 0.00 0.00 0.00 4.17
278 295 5.186942 CAATCCATCAAATCCCAATTGCAA 58.813 37.500 0.00 0.00 0.00 4.08
279 296 4.771903 CAATCCATCAAATCCCAATTGCA 58.228 39.130 0.00 0.00 0.00 4.08
280 297 3.562557 GCAATCCATCAAATCCCAATTGC 59.437 43.478 0.00 0.00 40.23 3.56
281 298 4.771903 TGCAATCCATCAAATCCCAATTG 58.228 39.130 0.00 0.00 0.00 2.32
282 299 5.438698 TTGCAATCCATCAAATCCCAATT 57.561 34.783 0.00 0.00 0.00 2.32
283 300 5.104277 ACATTGCAATCCATCAAATCCCAAT 60.104 36.000 9.53 0.00 0.00 3.16
284 301 4.225492 ACATTGCAATCCATCAAATCCCAA 59.775 37.500 9.53 0.00 0.00 4.12
285 302 3.775866 ACATTGCAATCCATCAAATCCCA 59.224 39.130 9.53 0.00 0.00 4.37
286 303 4.374399 GACATTGCAATCCATCAAATCCC 58.626 43.478 9.53 0.00 0.00 3.85
287 304 4.046462 CGACATTGCAATCCATCAAATCC 58.954 43.478 9.53 0.00 0.00 3.01
288 305 4.923893 TCGACATTGCAATCCATCAAATC 58.076 39.130 9.53 0.00 0.00 2.17
289 306 4.987408 TCGACATTGCAATCCATCAAAT 57.013 36.364 9.53 0.00 0.00 2.32
290 307 4.398673 TCATCGACATTGCAATCCATCAAA 59.601 37.500 9.53 0.00 0.00 2.69
291 308 3.946558 TCATCGACATTGCAATCCATCAA 59.053 39.130 9.53 0.00 0.00 2.57
292 309 3.543665 TCATCGACATTGCAATCCATCA 58.456 40.909 9.53 0.26 0.00 3.07
293 310 4.473199 CATCATCGACATTGCAATCCATC 58.527 43.478 9.53 6.86 0.00 3.51
294 311 3.305131 GCATCATCGACATTGCAATCCAT 60.305 43.478 9.53 0.00 35.22 3.41
295 312 2.033675 GCATCATCGACATTGCAATCCA 59.966 45.455 9.53 0.00 35.22 3.41
296 313 2.292569 AGCATCATCGACATTGCAATCC 59.707 45.455 9.53 3.61 37.56 3.01
297 314 3.620929 AGCATCATCGACATTGCAATC 57.379 42.857 9.53 0.00 37.56 2.67
298 315 3.630769 AGAAGCATCATCGACATTGCAAT 59.369 39.130 5.99 5.99 37.56 3.56
299 316 3.011818 AGAAGCATCATCGACATTGCAA 58.988 40.909 15.18 0.00 37.56 4.08
300 317 2.353579 CAGAAGCATCATCGACATTGCA 59.646 45.455 15.18 0.00 37.56 4.08
301 318 2.610833 TCAGAAGCATCATCGACATTGC 59.389 45.455 7.09 7.09 35.34 3.56
302 319 4.870221 TTCAGAAGCATCATCGACATTG 57.130 40.909 0.00 0.00 0.00 2.82
303 320 4.696877 TGTTTCAGAAGCATCATCGACATT 59.303 37.500 0.00 0.00 0.00 2.71
304 321 4.256110 TGTTTCAGAAGCATCATCGACAT 58.744 39.130 0.00 0.00 0.00 3.06
305 322 3.663025 TGTTTCAGAAGCATCATCGACA 58.337 40.909 0.00 0.00 0.00 4.35
306 323 4.495349 CCATGTTTCAGAAGCATCATCGAC 60.495 45.833 9.42 0.00 0.00 4.20
307 324 3.624410 CCATGTTTCAGAAGCATCATCGA 59.376 43.478 9.42 0.00 0.00 3.59
308 325 3.376234 ACCATGTTTCAGAAGCATCATCG 59.624 43.478 9.42 0.00 0.00 3.84
309 326 4.397103 TGACCATGTTTCAGAAGCATCATC 59.603 41.667 9.42 10.25 0.00 2.92
310 327 4.338012 TGACCATGTTTCAGAAGCATCAT 58.662 39.130 9.42 1.43 0.00 2.45
311 328 3.753815 TGACCATGTTTCAGAAGCATCA 58.246 40.909 9.42 3.93 0.00 3.07
312 329 3.755378 ACTGACCATGTTTCAGAAGCATC 59.245 43.478 22.30 1.41 42.81 3.91
313 330 3.504906 CACTGACCATGTTTCAGAAGCAT 59.495 43.478 22.30 6.67 42.81 3.79
314 331 2.880268 CACTGACCATGTTTCAGAAGCA 59.120 45.455 22.30 1.71 42.81 3.91
315 332 2.880890 ACACTGACCATGTTTCAGAAGC 59.119 45.455 22.30 0.00 42.81 3.86
316 333 4.790766 GCAACACTGACCATGTTTCAGAAG 60.791 45.833 22.30 16.96 42.81 2.85
317 334 3.066621 GCAACACTGACCATGTTTCAGAA 59.933 43.478 22.30 0.00 42.81 3.02
318 335 2.618241 GCAACACTGACCATGTTTCAGA 59.382 45.455 22.30 0.00 42.81 3.27
319 336 2.358582 TGCAACACTGACCATGTTTCAG 59.641 45.455 16.43 16.43 45.21 3.02
320 337 2.373224 TGCAACACTGACCATGTTTCA 58.627 42.857 0.00 0.00 38.22 2.69
321 338 3.435105 TTGCAACACTGACCATGTTTC 57.565 42.857 0.00 0.00 38.22 2.78
322 339 3.384146 TCATTGCAACACTGACCATGTTT 59.616 39.130 0.00 0.00 38.22 2.83
323 340 2.957680 TCATTGCAACACTGACCATGTT 59.042 40.909 0.00 0.00 40.95 2.71
324 341 2.585330 TCATTGCAACACTGACCATGT 58.415 42.857 0.00 0.00 0.00 3.21
325 342 3.646611 TTCATTGCAACACTGACCATG 57.353 42.857 0.00 0.00 0.00 3.66
326 343 3.890756 TCTTTCATTGCAACACTGACCAT 59.109 39.130 0.00 0.00 0.00 3.55
327 344 3.286353 TCTTTCATTGCAACACTGACCA 58.714 40.909 0.00 0.00 0.00 4.02
328 345 3.565482 TCTCTTTCATTGCAACACTGACC 59.435 43.478 0.00 0.00 0.00 4.02
329 346 4.531332 GTCTCTTTCATTGCAACACTGAC 58.469 43.478 0.00 0.80 0.00 3.51
330 347 3.248363 CGTCTCTTTCATTGCAACACTGA 59.752 43.478 0.00 0.00 0.00 3.41
331 348 3.248363 TCGTCTCTTTCATTGCAACACTG 59.752 43.478 0.00 0.00 0.00 3.66
332 349 3.466836 TCGTCTCTTTCATTGCAACACT 58.533 40.909 0.00 0.00 0.00 3.55
333 350 3.364366 CCTCGTCTCTTTCATTGCAACAC 60.364 47.826 0.00 0.00 0.00 3.32
334 351 2.807967 CCTCGTCTCTTTCATTGCAACA 59.192 45.455 0.00 0.00 0.00 3.33
335 352 2.160417 CCCTCGTCTCTTTCATTGCAAC 59.840 50.000 0.00 0.00 0.00 4.17
336 353 2.038426 TCCCTCGTCTCTTTCATTGCAA 59.962 45.455 0.00 0.00 0.00 4.08
337 354 1.623311 TCCCTCGTCTCTTTCATTGCA 59.377 47.619 0.00 0.00 0.00 4.08
338 355 2.386661 TCCCTCGTCTCTTTCATTGC 57.613 50.000 0.00 0.00 0.00 3.56
339 356 4.065088 TGTTTCCCTCGTCTCTTTCATTG 58.935 43.478 0.00 0.00 0.00 2.82
340 357 4.065789 GTGTTTCCCTCGTCTCTTTCATT 58.934 43.478 0.00 0.00 0.00 2.57
341 358 3.325135 AGTGTTTCCCTCGTCTCTTTCAT 59.675 43.478 0.00 0.00 0.00 2.57
342 359 2.698797 AGTGTTTCCCTCGTCTCTTTCA 59.301 45.455 0.00 0.00 0.00 2.69
343 360 3.060602 CAGTGTTTCCCTCGTCTCTTTC 58.939 50.000 0.00 0.00 0.00 2.62
344 361 2.224305 CCAGTGTTTCCCTCGTCTCTTT 60.224 50.000 0.00 0.00 0.00 2.52
345 362 1.344763 CCAGTGTTTCCCTCGTCTCTT 59.655 52.381 0.00 0.00 0.00 2.85
346 363 0.969894 CCAGTGTTTCCCTCGTCTCT 59.030 55.000 0.00 0.00 0.00 3.10
347 364 0.966920 TCCAGTGTTTCCCTCGTCTC 59.033 55.000 0.00 0.00 0.00 3.36
348 365 0.969894 CTCCAGTGTTTCCCTCGTCT 59.030 55.000 0.00 0.00 0.00 4.18
349 366 0.670854 GCTCCAGTGTTTCCCTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
350 367 1.371558 GCTCCAGTGTTTCCCTCGT 59.628 57.895 0.00 0.00 0.00 4.18
351 368 1.376037 GGCTCCAGTGTTTCCCTCG 60.376 63.158 0.00 0.00 0.00 4.63
352 369 1.376037 CGGCTCCAGTGTTTCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
353 370 2.750350 CGGCTCCAGTGTTTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
354 371 3.056328 GCGGCTCCAGTGTTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
355 372 1.600916 AAGCGGCTCCAGTGTTTCC 60.601 57.895 1.45 0.00 0.00 3.13
356 373 0.884704 TCAAGCGGCTCCAGTGTTTC 60.885 55.000 1.45 0.00 0.00 2.78
357 374 0.250901 ATCAAGCGGCTCCAGTGTTT 60.251 50.000 1.45 0.00 0.00 2.83
358 375 0.957395 CATCAAGCGGCTCCAGTGTT 60.957 55.000 1.45 0.00 0.00 3.32
359 376 1.376424 CATCAAGCGGCTCCAGTGT 60.376 57.895 1.45 0.00 0.00 3.55
360 377 2.110967 CCATCAAGCGGCTCCAGTG 61.111 63.158 1.45 0.00 0.00 3.66
361 378 1.630126 ATCCATCAAGCGGCTCCAGT 61.630 55.000 1.45 0.00 0.00 4.00
362 379 0.465097 AATCCATCAAGCGGCTCCAG 60.465 55.000 1.45 0.00 0.00 3.86
363 380 0.836606 TAATCCATCAAGCGGCTCCA 59.163 50.000 1.45 0.00 0.00 3.86
364 381 1.230324 GTAATCCATCAAGCGGCTCC 58.770 55.000 1.45 0.00 0.00 4.70
365 382 1.953559 TGTAATCCATCAAGCGGCTC 58.046 50.000 1.45 0.00 0.00 4.70
366 383 2.017049 GTTGTAATCCATCAAGCGGCT 58.983 47.619 0.00 0.00 0.00 5.52
367 384 1.268032 CGTTGTAATCCATCAAGCGGC 60.268 52.381 0.00 0.00 0.00 6.53
368 385 2.006888 ACGTTGTAATCCATCAAGCGG 58.993 47.619 0.00 0.00 0.00 5.52
369 386 2.030457 GGACGTTGTAATCCATCAAGCG 59.970 50.000 0.00 0.00 34.87 4.68
370 387 3.270877 AGGACGTTGTAATCCATCAAGC 58.729 45.455 0.00 0.00 37.47 4.01
371 388 6.978343 TTAAGGACGTTGTAATCCATCAAG 57.022 37.500 0.00 0.00 37.47 3.02
372 389 6.882140 ACATTAAGGACGTTGTAATCCATCAA 59.118 34.615 0.00 0.00 37.47 2.57
373 390 6.411376 ACATTAAGGACGTTGTAATCCATCA 58.589 36.000 0.00 0.00 37.47 3.07
374 391 6.920569 ACATTAAGGACGTTGTAATCCATC 57.079 37.500 0.00 0.00 37.47 3.51
375 392 7.610305 AGAAACATTAAGGACGTTGTAATCCAT 59.390 33.333 0.00 0.00 37.47 3.41
376 393 6.938030 AGAAACATTAAGGACGTTGTAATCCA 59.062 34.615 0.00 0.00 37.47 3.41
377 394 7.118680 TCAGAAACATTAAGGACGTTGTAATCC 59.881 37.037 0.00 0.00 34.98 3.01
378 395 8.025243 TCAGAAACATTAAGGACGTTGTAATC 57.975 34.615 0.00 0.00 0.00 1.75
432 450 2.960170 CTCTCCGTCGGACCGTTT 59.040 61.111 10.71 0.00 0.00 3.60
433 451 3.745803 GCTCTCCGTCGGACCGTT 61.746 66.667 10.71 0.00 0.00 4.44
439 457 4.717629 TGTTGCGCTCTCCGTCGG 62.718 66.667 9.73 4.39 39.71 4.79
448 466 1.859427 CAACATGAGCCTGTTGCGCT 61.859 55.000 9.73 0.00 46.63 5.92
449 467 1.443194 CAACATGAGCCTGTTGCGC 60.443 57.895 0.00 0.00 46.63 6.09
450 468 4.853507 CAACATGAGCCTGTTGCG 57.146 55.556 0.00 0.00 46.63 4.85
454 472 0.316204 GCTTTGCAACATGAGCCTGT 59.684 50.000 9.29 0.00 0.00 4.00
455 473 0.731514 CGCTTTGCAACATGAGCCTG 60.732 55.000 13.76 0.00 0.00 4.85
474 492 2.202349 GATCGTGTTGCGCTTGGC 60.202 61.111 9.73 0.00 41.07 4.52
475 493 1.577328 AAGGATCGTGTTGCGCTTGG 61.577 55.000 9.73 0.00 41.07 3.61
476 494 0.453282 CAAGGATCGTGTTGCGCTTG 60.453 55.000 9.73 0.00 41.07 4.01
477 495 0.884704 ACAAGGATCGTGTTGCGCTT 60.885 50.000 9.73 0.00 41.07 4.68
478 496 0.884704 AACAAGGATCGTGTTGCGCT 60.885 50.000 9.73 0.00 37.80 5.92
479 497 0.725784 CAACAAGGATCGTGTTGCGC 60.726 55.000 21.18 0.00 46.63 6.09
480 498 3.366392 CAACAAGGATCGTGTTGCG 57.634 52.632 21.18 6.10 46.63 4.85
490 508 0.827507 GCCCTCCTTTGCAACAAGGA 60.828 55.000 17.11 17.11 42.55 3.36
511 529 0.179124 GTCTGATCTCTCCACGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
513 531 1.439644 GGTCTGATCTCTCCACGGC 59.560 63.158 0.00 0.00 0.00 5.68
527 549 4.112341 GCGCTACACGTCCGGTCT 62.112 66.667 0.00 0.00 46.11 3.85
536 558 4.628074 TCATAATTAGGGAAGCGCTACAC 58.372 43.478 12.05 5.38 0.00 2.90
537 559 4.587262 TCTCATAATTAGGGAAGCGCTACA 59.413 41.667 12.05 0.00 0.00 2.74
542 564 4.209288 CGTGTTCTCATAATTAGGGAAGCG 59.791 45.833 0.00 4.75 0.00 4.68
546 568 9.754382 GTATTAACGTGTTCTCATAATTAGGGA 57.246 33.333 0.00 0.00 0.00 4.20
555 578 6.347079 CGTTGGTTGTATTAACGTGTTCTCAT 60.347 38.462 0.00 0.00 41.43 2.90
570 593 1.932511 GTTGGTTCGTCGTTGGTTGTA 59.067 47.619 0.00 0.00 0.00 2.41
571 594 0.728542 GTTGGTTCGTCGTTGGTTGT 59.271 50.000 0.00 0.00 0.00 3.32
572 595 0.028374 GGTTGGTTCGTCGTTGGTTG 59.972 55.000 0.00 0.00 0.00 3.77
573 596 0.392729 TGGTTGGTTCGTCGTTGGTT 60.393 50.000 0.00 0.00 0.00 3.67
575 598 0.812412 ACTGGTTGGTTCGTCGTTGG 60.812 55.000 0.00 0.00 0.00 3.77
580 603 1.064952 CCAAACACTGGTTGGTTCGTC 59.935 52.381 16.77 0.00 40.78 4.20
581 604 1.099689 CCAAACACTGGTTGGTTCGT 58.900 50.000 16.77 0.00 40.78 3.85
582 605 1.384525 TCCAAACACTGGTTGGTTCG 58.615 50.000 22.78 0.62 46.51 3.95
591 614 3.009033 TCCCTCTAACCATCCAAACACTG 59.991 47.826 0.00 0.00 0.00 3.66
592 615 3.009143 GTCCCTCTAACCATCCAAACACT 59.991 47.826 0.00 0.00 0.00 3.55
593 616 3.009143 AGTCCCTCTAACCATCCAAACAC 59.991 47.826 0.00 0.00 0.00 3.32
594 617 3.009033 CAGTCCCTCTAACCATCCAAACA 59.991 47.826 0.00 0.00 0.00 2.83
596 619 3.009033 CACAGTCCCTCTAACCATCCAAA 59.991 47.826 0.00 0.00 0.00 3.28
597 620 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
600 623 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
601 624 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
603 626 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
630 653 0.036875 GAGGACTTGAACCCTGGTGG 59.963 60.000 0.00 0.00 41.37 4.61
631 654 1.059913 AGAGGACTTGAACCCTGGTG 58.940 55.000 0.00 0.00 31.84 4.17
632 655 1.059913 CAGAGGACTTGAACCCTGGT 58.940 55.000 0.00 0.00 31.84 4.00
634 657 2.772287 GAACAGAGGACTTGAACCCTG 58.228 52.381 0.00 0.00 34.39 4.45
635 658 1.344763 CGAACAGAGGACTTGAACCCT 59.655 52.381 0.00 0.00 35.02 4.34
636 659 1.070289 ACGAACAGAGGACTTGAACCC 59.930 52.381 0.00 0.00 0.00 4.11
637 660 2.528041 ACGAACAGAGGACTTGAACC 57.472 50.000 0.00 0.00 0.00 3.62
638 661 6.867293 AGTATTTACGAACAGAGGACTTGAAC 59.133 38.462 0.00 0.00 0.00 3.18
640 663 6.585695 AGTATTTACGAACAGAGGACTTGA 57.414 37.500 0.00 0.00 0.00 3.02
641 664 6.645415 ACAAGTATTTACGAACAGAGGACTTG 59.355 38.462 8.88 8.88 44.23 3.16
644 667 6.128634 CCAACAAGTATTTACGAACAGAGGAC 60.129 42.308 0.00 0.00 0.00 3.85
645 668 5.929992 CCAACAAGTATTTACGAACAGAGGA 59.070 40.000 0.00 0.00 0.00 3.71
647 670 7.416154 TTCCAACAAGTATTTACGAACAGAG 57.584 36.000 0.00 0.00 0.00 3.35
648 671 7.789273 TTTCCAACAAGTATTTACGAACAGA 57.211 32.000 0.00 0.00 0.00 3.41
649 672 8.844441 TTTTTCCAACAAGTATTTACGAACAG 57.156 30.769 0.00 0.00 0.00 3.16
726 771 7.354257 CCTCGTCCGAAAATACTTGTTAAAAA 58.646 34.615 0.00 0.00 0.00 1.94
727 772 6.073112 CCCTCGTCCGAAAATACTTGTTAAAA 60.073 38.462 0.00 0.00 0.00 1.52
728 773 5.409214 CCCTCGTCCGAAAATACTTGTTAAA 59.591 40.000 0.00 0.00 0.00 1.52
730 775 4.220382 TCCCTCGTCCGAAAATACTTGTTA 59.780 41.667 0.00 0.00 0.00 2.41
732 777 2.564062 TCCCTCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
733 778 3.241067 TCCCTCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
735 780 2.830321 ACTTCCCTCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
736 781 3.242549 ACTTCCCTCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
737 782 3.763360 TGTACTTCCCTCGTCCGAAAATA 59.237 43.478 0.00 0.00 0.00 1.40
738 783 2.564062 TGTACTTCCCTCGTCCGAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
739 784 1.962807 TGTACTTCCCTCGTCCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
740 785 1.619654 TGTACTTCCCTCGTCCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
741 786 1.270550 GTTGTACTTCCCTCGTCCGAA 59.729 52.381 0.00 0.00 0.00 4.30
742 787 0.883833 GTTGTACTTCCCTCGTCCGA 59.116 55.000 0.00 0.00 0.00 4.55
743 788 0.108945 GGTTGTACTTCCCTCGTCCG 60.109 60.000 0.00 0.00 0.00 4.79
744 789 0.971386 TGGTTGTACTTCCCTCGTCC 59.029 55.000 0.00 0.00 0.00 4.79
746 791 2.635915 TCATTGGTTGTACTTCCCTCGT 59.364 45.455 0.00 0.00 0.00 4.18
749 794 4.848357 CTCATCATTGGTTGTACTTCCCT 58.152 43.478 0.00 0.00 0.00 4.20
750 795 3.378427 GCTCATCATTGGTTGTACTTCCC 59.622 47.826 0.00 0.00 0.00 3.97
754 935 2.632377 CCGCTCATCATTGGTTGTACT 58.368 47.619 0.00 0.00 0.00 2.73
756 937 1.065491 AGCCGCTCATCATTGGTTGTA 60.065 47.619 0.00 0.00 0.00 2.41
757 938 0.322816 AGCCGCTCATCATTGGTTGT 60.323 50.000 0.00 0.00 0.00 3.32
771 952 0.602372 GGAGAGAATCATCCAGCCGC 60.602 60.000 0.33 0.00 37.82 6.53
775 956 3.316501 AGGAAGGGAGAGAATCATCCAG 58.683 50.000 6.81 0.00 37.82 3.86
781 962 1.416030 GGCAGAGGAAGGGAGAGAATC 59.584 57.143 0.00 0.00 0.00 2.52
783 964 0.972983 CGGCAGAGGAAGGGAGAGAA 60.973 60.000 0.00 0.00 0.00 2.87
784 965 1.380515 CGGCAGAGGAAGGGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
807 988 3.004734 CCCCAATACCGAATCAGAATTGC 59.995 47.826 0.00 0.00 0.00 3.56
849 1038 2.481289 TTGAGACGAGAGAGAGCTGA 57.519 50.000 0.00 0.00 0.00 4.26
851 1040 1.939934 CGATTGAGACGAGAGAGAGCT 59.060 52.381 0.00 0.00 0.00 4.09
895 1084 0.895100 TACGTACTTGCGGGTCTGGT 60.895 55.000 0.00 0.00 35.98 4.00
912 1101 1.191647 CTTCACGAGTTTGCACGGTAC 59.808 52.381 0.00 0.00 33.08 3.34
918 1107 1.668751 GTGTTCCTTCACGAGTTTGCA 59.331 47.619 0.00 0.00 0.00 4.08
961 1150 2.561373 CGGGCTGCGGAAAAGAAC 59.439 61.111 0.00 0.00 0.00 3.01
962 1151 3.361977 GCGGGCTGCGGAAAAGAA 61.362 61.111 0.81 0.00 0.00 2.52
995 1184 4.758251 TCACGGCGGCCATGTCTG 62.758 66.667 20.71 3.63 0.00 3.51
1506 1752 1.497223 CCTCCTCGTAGTCGTAGCCG 61.497 65.000 0.00 0.00 38.33 5.52
1507 1753 0.179062 TCCTCCTCGTAGTCGTAGCC 60.179 60.000 0.00 0.00 38.33 3.93
1508 1754 0.936600 GTCCTCCTCGTAGTCGTAGC 59.063 60.000 0.00 0.00 38.33 3.58
1509 1755 1.202348 TCGTCCTCCTCGTAGTCGTAG 60.202 57.143 0.00 0.00 38.33 3.51
1510 1756 0.817654 TCGTCCTCCTCGTAGTCGTA 59.182 55.000 0.00 0.00 38.33 3.43
1511 1757 0.739112 GTCGTCCTCCTCGTAGTCGT 60.739 60.000 0.00 0.00 38.33 4.34
1933 2189 7.758076 AGTTTGCAATCATCATTTACATCACAG 59.242 33.333 10.05 0.00 0.00 3.66
1942 2198 6.518493 ACACAAGAGTTTGCAATCATCATTT 58.482 32.000 10.05 0.00 37.85 2.32
1944 2200 5.717078 ACACAAGAGTTTGCAATCATCAT 57.283 34.783 10.05 0.00 37.85 2.45
1946 2202 6.246420 ACTACACAAGAGTTTGCAATCATC 57.754 37.500 10.05 4.39 37.85 2.92
1947 2203 6.566564 CGAACTACACAAGAGTTTGCAATCAT 60.567 38.462 10.05 0.00 37.27 2.45
1959 2215 2.547218 GCCCTTCACGAACTACACAAGA 60.547 50.000 0.00 0.00 0.00 3.02
1962 2229 1.045407 AGCCCTTCACGAACTACACA 58.955 50.000 0.00 0.00 0.00 3.72
1967 2234 1.166531 GCAACAGCCCTTCACGAACT 61.167 55.000 0.00 0.00 0.00 3.01
2075 2350 8.038944 TCTTCACTAACATTTACTTCGGCTATT 58.961 33.333 0.00 0.00 0.00 1.73
2097 2384 3.928992 TCGCAAGAGATCAACACATCTTC 59.071 43.478 0.00 0.00 45.01 2.87
2118 2405 3.451526 TCAAGATCATCACATGCGTCTC 58.548 45.455 0.00 0.00 0.00 3.36
2120 2407 4.056740 AGATCAAGATCATCACATGCGTC 58.943 43.478 12.21 0.00 40.22 5.19
2122 2409 3.808174 ACAGATCAAGATCATCACATGCG 59.192 43.478 12.21 0.00 40.22 4.73
2169 2456 3.866651 CCTCATCATCAGAGAAAACGGT 58.133 45.455 0.00 0.00 35.09 4.83
2172 2459 5.633830 TTTGCCTCATCATCAGAGAAAAC 57.366 39.130 0.00 0.00 35.09 2.43
2173 2460 5.947566 TGATTTGCCTCATCATCAGAGAAAA 59.052 36.000 0.00 0.00 35.09 2.29
2189 2476 6.403636 CCAGTTGTGTATTCTAGTGATTTGCC 60.404 42.308 0.00 0.00 0.00 4.52
2190 2477 6.546395 CCAGTTGTGTATTCTAGTGATTTGC 58.454 40.000 0.00 0.00 0.00 3.68
2192 2479 6.237901 TGCCAGTTGTGTATTCTAGTGATTT 58.762 36.000 0.00 0.00 0.00 2.17
2194 2481 5.420725 TGCCAGTTGTGTATTCTAGTGAT 57.579 39.130 0.00 0.00 0.00 3.06
2195 2482 4.882842 TGCCAGTTGTGTATTCTAGTGA 57.117 40.909 0.00 0.00 0.00 3.41
2196 2483 5.237815 TCTTGCCAGTTGTGTATTCTAGTG 58.762 41.667 0.00 0.00 0.00 2.74
2197 2484 5.483685 TCTTGCCAGTTGTGTATTCTAGT 57.516 39.130 0.00 0.00 0.00 2.57
2198 2485 6.372659 ACATTCTTGCCAGTTGTGTATTCTAG 59.627 38.462 0.00 0.00 0.00 2.43
2199 2486 6.149308 CACATTCTTGCCAGTTGTGTATTCTA 59.851 38.462 12.35 0.00 33.83 2.10
2200 2487 5.048504 CACATTCTTGCCAGTTGTGTATTCT 60.049 40.000 12.35 0.00 33.83 2.40
2201 2488 5.048782 TCACATTCTTGCCAGTTGTGTATTC 60.049 40.000 16.95 0.00 36.95 1.75
2202 2489 4.826733 TCACATTCTTGCCAGTTGTGTATT 59.173 37.500 16.95 0.00 36.95 1.89
2203 2490 4.397420 TCACATTCTTGCCAGTTGTGTAT 58.603 39.130 16.95 0.00 36.95 2.29
2204 2491 3.814625 TCACATTCTTGCCAGTTGTGTA 58.185 40.909 16.95 7.21 36.95 2.90
2205 2492 2.653726 TCACATTCTTGCCAGTTGTGT 58.346 42.857 16.95 5.55 36.95 3.72
2206 2493 3.253921 TCATCACATTCTTGCCAGTTGTG 59.746 43.478 13.62 13.62 36.95 3.33
2210 2497 3.959293 TCATCATCACATTCTTGCCAGT 58.041 40.909 0.00 0.00 0.00 4.00
2230 2517 3.446310 TGCAATGCAATCCATCACATC 57.554 42.857 5.01 0.00 34.76 3.06
2244 2808 3.551890 GCAGAGAATTCAGCAATGCAATG 59.448 43.478 8.35 0.00 36.02 2.82
2557 3125 9.303116 TCAAAACACCAACTATGTACCATTATT 57.697 29.630 0.00 0.00 0.00 1.40
2565 3133 7.907389 AGATCTCTCAAAACACCAACTATGTA 58.093 34.615 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.