Multiple sequence alignment - TraesCS4D01G039900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G039900 chr4D 100.000 3236 0 0 1 3236 17768021 17764786 0.000000 5976.0
1 TraesCS4D01G039900 chr4B 88.463 2869 177 62 410 3184 29675249 29672441 0.000000 3323.0
2 TraesCS4D01G039900 chr4A 88.136 2613 155 77 410 2901 583164188 583161610 0.000000 2964.0
3 TraesCS4D01G039900 chr4A 100.000 31 0 0 531 561 583164032 583164062 0.000125 58.4
4 TraesCS4D01G039900 chr3D 100.000 28 0 0 455 482 48069289 48069316 0.006000 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G039900 chr4D 17764786 17768021 3235 True 5976 5976 100.000 1 3236 1 chr4D.!!$R1 3235
1 TraesCS4D01G039900 chr4B 29672441 29675249 2808 True 3323 3323 88.463 410 3184 1 chr4B.!!$R1 2774
2 TraesCS4D01G039900 chr4A 583161610 583164188 2578 True 2964 2964 88.136 410 2901 1 chr4A.!!$R1 2491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.034767 TAGACCGTCGACCACCAGAT 60.035 55.0 10.58 0.0 0.0 2.90 F
331 332 0.036875 GCTAGGTGTGGCTTGTTCCT 59.963 55.0 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 1157 0.668535 TCCATATGTCGACCTGAGCG 59.331 55.0 14.12 0.0 0.00 5.03 R
2297 2419 0.892755 CAGTGCAAATGCTGGGTGAT 59.107 50.0 6.97 0.0 42.66 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.822306 ACAACCATGCGTGTAGTCG 58.178 52.632 4.96 0.00 0.00 4.18
26 27 4.957266 CGTGTAGTCGCAGGTCAA 57.043 55.556 0.00 0.00 0.00 3.18
27 28 3.418675 CGTGTAGTCGCAGGTCAAT 57.581 52.632 0.00 0.00 0.00 2.57
28 29 1.710013 CGTGTAGTCGCAGGTCAATT 58.290 50.000 0.00 0.00 0.00 2.32
29 30 2.066262 CGTGTAGTCGCAGGTCAATTT 58.934 47.619 0.00 0.00 0.00 1.82
30 31 2.478894 CGTGTAGTCGCAGGTCAATTTT 59.521 45.455 0.00 0.00 0.00 1.82
31 32 3.059188 CGTGTAGTCGCAGGTCAATTTTT 60.059 43.478 0.00 0.00 0.00 1.94
56 57 7.757941 TTTTGAACAGTCATATGTGAATCCA 57.242 32.000 1.90 0.00 35.80 3.41
57 58 7.757941 TTTGAACAGTCATATGTGAATCCAA 57.242 32.000 1.90 0.00 35.80 3.53
58 59 7.943079 TTGAACAGTCATATGTGAATCCAAT 57.057 32.000 1.90 0.00 35.80 3.16
59 60 7.324354 TGAACAGTCATATGTGAATCCAATG 57.676 36.000 1.90 0.00 35.80 2.82
60 61 6.319405 TGAACAGTCATATGTGAATCCAATGG 59.681 38.462 1.90 0.00 35.80 3.16
61 62 4.581824 ACAGTCATATGTGAATCCAATGGC 59.418 41.667 1.90 0.00 35.80 4.40
62 63 4.022589 CAGTCATATGTGAATCCAATGGCC 60.023 45.833 1.90 0.00 35.80 5.36
63 64 3.890756 GTCATATGTGAATCCAATGGCCA 59.109 43.478 8.56 8.56 35.80 5.36
64 65 4.341806 GTCATATGTGAATCCAATGGCCAA 59.658 41.667 10.96 0.00 35.80 4.52
65 66 4.961099 TCATATGTGAATCCAATGGCCAAA 59.039 37.500 10.96 0.00 0.00 3.28
66 67 5.603395 TCATATGTGAATCCAATGGCCAAAT 59.397 36.000 10.96 0.00 0.00 2.32
67 68 4.847990 ATGTGAATCCAATGGCCAAATT 57.152 36.364 10.96 7.67 0.00 1.82
68 69 3.940319 TGTGAATCCAATGGCCAAATTG 58.060 40.909 10.96 11.30 37.30 2.32
69 70 2.679336 GTGAATCCAATGGCCAAATTGC 59.321 45.455 10.96 0.00 36.42 3.56
70 71 2.572556 TGAATCCAATGGCCAAATTGCT 59.427 40.909 10.96 0.00 36.42 3.91
71 72 3.009253 TGAATCCAATGGCCAAATTGCTT 59.991 39.130 10.96 7.16 36.42 3.91
72 73 3.724732 ATCCAATGGCCAAATTGCTTT 57.275 38.095 10.96 0.00 36.42 3.51
73 74 3.056588 TCCAATGGCCAAATTGCTTTC 57.943 42.857 10.96 0.00 36.42 2.62
74 75 2.638855 TCCAATGGCCAAATTGCTTTCT 59.361 40.909 10.96 0.00 36.42 2.52
75 76 3.072768 TCCAATGGCCAAATTGCTTTCTT 59.927 39.130 10.96 0.00 36.42 2.52
76 77 3.437741 CCAATGGCCAAATTGCTTTCTTC 59.562 43.478 10.96 0.00 36.42 2.87
77 78 4.066490 CAATGGCCAAATTGCTTTCTTCA 58.934 39.130 10.96 0.00 31.19 3.02
78 79 4.563140 ATGGCCAAATTGCTTTCTTCAT 57.437 36.364 10.96 0.00 0.00 2.57
79 80 3.929094 TGGCCAAATTGCTTTCTTCATC 58.071 40.909 0.61 0.00 0.00 2.92
80 81 3.324268 TGGCCAAATTGCTTTCTTCATCA 59.676 39.130 0.61 0.00 0.00 3.07
81 82 4.020039 TGGCCAAATTGCTTTCTTCATCAT 60.020 37.500 0.61 0.00 0.00 2.45
82 83 4.939439 GGCCAAATTGCTTTCTTCATCATT 59.061 37.500 0.00 0.00 0.00 2.57
83 84 5.413523 GGCCAAATTGCTTTCTTCATCATTT 59.586 36.000 0.00 0.00 0.00 2.32
84 85 6.072342 GGCCAAATTGCTTTCTTCATCATTTT 60.072 34.615 0.00 0.00 0.00 1.82
85 86 7.019418 GCCAAATTGCTTTCTTCATCATTTTC 58.981 34.615 0.00 0.00 0.00 2.29
86 87 7.094933 GCCAAATTGCTTTCTTCATCATTTTCT 60.095 33.333 0.00 0.00 0.00 2.52
87 88 8.440833 CCAAATTGCTTTCTTCATCATTTTCTC 58.559 33.333 0.00 0.00 0.00 2.87
88 89 8.440833 CAAATTGCTTTCTTCATCATTTTCTCC 58.559 33.333 0.00 0.00 0.00 3.71
89 90 5.649782 TGCTTTCTTCATCATTTTCTCCC 57.350 39.130 0.00 0.00 0.00 4.30
90 91 5.078949 TGCTTTCTTCATCATTTTCTCCCA 58.921 37.500 0.00 0.00 0.00 4.37
91 92 5.539574 TGCTTTCTTCATCATTTTCTCCCAA 59.460 36.000 0.00 0.00 0.00 4.12
92 93 6.211986 TGCTTTCTTCATCATTTTCTCCCAAT 59.788 34.615 0.00 0.00 0.00 3.16
93 94 6.755607 GCTTTCTTCATCATTTTCTCCCAATC 59.244 38.462 0.00 0.00 0.00 2.67
94 95 6.780457 TTCTTCATCATTTTCTCCCAATCC 57.220 37.500 0.00 0.00 0.00 3.01
95 96 4.883585 TCTTCATCATTTTCTCCCAATCCG 59.116 41.667 0.00 0.00 0.00 4.18
96 97 4.235079 TCATCATTTTCTCCCAATCCGT 57.765 40.909 0.00 0.00 0.00 4.69
97 98 4.199310 TCATCATTTTCTCCCAATCCGTC 58.801 43.478 0.00 0.00 0.00 4.79
98 99 3.712016 TCATTTTCTCCCAATCCGTCA 57.288 42.857 0.00 0.00 0.00 4.35
99 100 3.609853 TCATTTTCTCCCAATCCGTCAG 58.390 45.455 0.00 0.00 0.00 3.51
100 101 3.009033 TCATTTTCTCCCAATCCGTCAGT 59.991 43.478 0.00 0.00 0.00 3.41
101 102 2.472695 TTTCTCCCAATCCGTCAGTG 57.527 50.000 0.00 0.00 0.00 3.66
102 103 1.639722 TTCTCCCAATCCGTCAGTGA 58.360 50.000 0.00 0.00 0.00 3.41
103 104 0.895530 TCTCCCAATCCGTCAGTGAC 59.104 55.000 13.56 13.56 0.00 3.67
104 105 0.108138 CTCCCAATCCGTCAGTGACC 60.108 60.000 17.57 0.38 0.00 4.02
105 106 0.834261 TCCCAATCCGTCAGTGACCA 60.834 55.000 17.57 4.88 0.00 4.02
106 107 0.673644 CCCAATCCGTCAGTGACCAC 60.674 60.000 17.57 0.00 0.00 4.16
107 108 0.673644 CCAATCCGTCAGTGACCACC 60.674 60.000 17.57 0.00 0.00 4.61
108 109 1.014044 CAATCCGTCAGTGACCACCG 61.014 60.000 17.57 5.81 0.00 4.94
109 110 2.167398 AATCCGTCAGTGACCACCGG 62.167 60.000 17.57 14.80 35.78 5.28
112 113 3.936203 GTCAGTGACCACCGGCCA 61.936 66.667 12.54 0.00 0.00 5.36
113 114 3.164977 TCAGTGACCACCGGCCAA 61.165 61.111 0.00 0.00 0.00 4.52
114 115 2.203280 CAGTGACCACCGGCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
115 116 1.603455 CAGTGACCACCGGCCAAAT 60.603 57.895 0.00 0.00 0.00 2.32
116 117 1.303317 AGTGACCACCGGCCAAATC 60.303 57.895 0.00 0.00 0.00 2.17
117 118 2.034999 TGACCACCGGCCAAATCC 59.965 61.111 0.00 0.00 0.00 3.01
118 119 2.355115 GACCACCGGCCAAATCCT 59.645 61.111 0.00 0.00 0.00 3.24
119 120 1.202099 TGACCACCGGCCAAATCCTA 61.202 55.000 0.00 0.00 0.00 2.94
120 121 0.182775 GACCACCGGCCAAATCCTAT 59.817 55.000 0.00 0.00 0.00 2.57
121 122 0.182775 ACCACCGGCCAAATCCTATC 59.817 55.000 0.00 0.00 0.00 2.08
122 123 0.474184 CCACCGGCCAAATCCTATCT 59.526 55.000 0.00 0.00 0.00 1.98
123 124 1.543429 CCACCGGCCAAATCCTATCTC 60.543 57.143 0.00 0.00 0.00 2.75
124 125 0.765510 ACCGGCCAAATCCTATCTCC 59.234 55.000 0.00 0.00 0.00 3.71
125 126 0.764890 CCGGCCAAATCCTATCTCCA 59.235 55.000 2.24 0.00 0.00 3.86
126 127 1.142870 CCGGCCAAATCCTATCTCCAA 59.857 52.381 2.24 0.00 0.00 3.53
127 128 2.222027 CGGCCAAATCCTATCTCCAAC 58.778 52.381 2.24 0.00 0.00 3.77
128 129 2.222027 GGCCAAATCCTATCTCCAACG 58.778 52.381 0.00 0.00 0.00 4.10
129 130 1.604278 GCCAAATCCTATCTCCAACGC 59.396 52.381 0.00 0.00 0.00 4.84
130 131 2.222027 CCAAATCCTATCTCCAACGCC 58.778 52.381 0.00 0.00 0.00 5.68
131 132 2.222027 CAAATCCTATCTCCAACGCCC 58.778 52.381 0.00 0.00 0.00 6.13
132 133 1.507140 AATCCTATCTCCAACGCCCA 58.493 50.000 0.00 0.00 0.00 5.36
133 134 0.759346 ATCCTATCTCCAACGCCCAC 59.241 55.000 0.00 0.00 0.00 4.61
135 136 1.227263 CTATCTCCAACGCCCACGG 60.227 63.158 0.00 0.00 46.04 4.94
136 137 1.956629 CTATCTCCAACGCCCACGGT 61.957 60.000 0.00 0.00 46.04 4.83
137 138 1.546589 TATCTCCAACGCCCACGGTT 61.547 55.000 0.00 0.00 46.04 4.44
138 139 3.353836 CTCCAACGCCCACGGTTG 61.354 66.667 0.00 0.00 46.04 3.77
139 140 4.939368 TCCAACGCCCACGGTTGG 62.939 66.667 15.66 15.66 44.62 3.77
147 148 3.499737 CCACGGTTGGCGATGCTC 61.500 66.667 0.00 0.00 35.56 4.26
148 149 3.499737 CACGGTTGGCGATGCTCC 61.500 66.667 0.00 0.00 0.00 4.70
149 150 4.778143 ACGGTTGGCGATGCTCCC 62.778 66.667 0.00 0.00 0.00 4.30
158 159 4.222847 GATGCTCCCGGGACCGTC 62.223 72.222 22.63 21.01 37.81 4.79
159 160 4.779733 ATGCTCCCGGGACCGTCT 62.780 66.667 22.63 0.00 37.81 4.18
161 162 2.757099 GCTCCCGGGACCGTCTTA 60.757 66.667 22.63 0.00 37.81 2.10
162 163 3.073742 GCTCCCGGGACCGTCTTAC 62.074 68.421 22.63 0.00 37.81 2.34
163 164 2.362889 TCCCGGGACCGTCTTACC 60.363 66.667 22.63 0.00 37.81 2.85
164 165 3.830192 CCCGGGACCGTCTTACCG 61.830 72.222 18.48 7.51 45.57 4.02
165 166 4.503314 CCGGGACCGTCTTACCGC 62.503 72.222 10.17 0.00 44.70 5.68
166 167 4.503314 CGGGACCGTCTTACCGCC 62.503 72.222 1.86 0.00 39.85 6.13
167 168 4.152964 GGGACCGTCTTACCGCCC 62.153 72.222 0.00 0.00 0.00 6.13
168 169 4.152964 GGACCGTCTTACCGCCCC 62.153 72.222 0.00 0.00 0.00 5.80
169 170 4.503314 GACCGTCTTACCGCCCCG 62.503 72.222 0.00 0.00 0.00 5.73
171 172 4.503314 CCGTCTTACCGCCCCGTC 62.503 72.222 0.00 0.00 0.00 4.79
172 173 4.503314 CGTCTTACCGCCCCGTCC 62.503 72.222 0.00 0.00 0.00 4.79
173 174 3.073101 GTCTTACCGCCCCGTCCT 61.073 66.667 0.00 0.00 0.00 3.85
174 175 2.757099 TCTTACCGCCCCGTCCTC 60.757 66.667 0.00 0.00 0.00 3.71
175 176 3.846430 CTTACCGCCCCGTCCTCC 61.846 72.222 0.00 0.00 0.00 4.30
184 185 4.444081 CCGTCCTCCCCTCGACCT 62.444 72.222 0.00 0.00 0.00 3.85
185 186 2.829458 CGTCCTCCCCTCGACCTC 60.829 72.222 0.00 0.00 0.00 3.85
186 187 2.442458 GTCCTCCCCTCGACCTCC 60.442 72.222 0.00 0.00 0.00 4.30
187 188 3.752167 TCCTCCCCTCGACCTCCC 61.752 72.222 0.00 0.00 0.00 4.30
188 189 4.862823 CCTCCCCTCGACCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
189 190 4.862823 CTCCCCTCGACCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
210 211 4.166011 GTCGTGCTTGCCGCCATC 62.166 66.667 0.00 0.00 38.05 3.51
224 225 3.958860 CATCCCCGGCCATCCCTC 61.959 72.222 2.24 0.00 0.00 4.30
225 226 4.192997 ATCCCCGGCCATCCCTCT 62.193 66.667 2.24 0.00 0.00 3.69
226 227 2.801640 ATCCCCGGCCATCCCTCTA 61.802 63.158 2.24 0.00 0.00 2.43
227 228 2.755439 ATCCCCGGCCATCCCTCTAG 62.755 65.000 2.24 0.00 0.00 2.43
228 229 2.201490 CCCGGCCATCCCTCTAGA 59.799 66.667 2.24 0.00 0.00 2.43
229 230 2.210711 CCCGGCCATCCCTCTAGAC 61.211 68.421 2.24 0.00 0.00 2.59
230 231 2.210711 CCGGCCATCCCTCTAGACC 61.211 68.421 2.24 0.00 0.00 3.85
231 232 2.565645 CGGCCATCCCTCTAGACCG 61.566 68.421 2.24 1.81 0.00 4.79
232 233 1.457831 GGCCATCCCTCTAGACCGT 60.458 63.158 0.00 0.00 0.00 4.83
233 234 1.465200 GGCCATCCCTCTAGACCGTC 61.465 65.000 0.00 0.00 0.00 4.79
234 235 1.797211 GCCATCCCTCTAGACCGTCG 61.797 65.000 0.00 0.00 0.00 5.12
235 236 0.179026 CCATCCCTCTAGACCGTCGA 60.179 60.000 0.00 0.00 0.00 4.20
236 237 0.945813 CATCCCTCTAGACCGTCGAC 59.054 60.000 5.18 5.18 0.00 4.20
237 238 0.179023 ATCCCTCTAGACCGTCGACC 60.179 60.000 10.58 0.00 0.00 4.79
238 239 1.077930 CCCTCTAGACCGTCGACCA 60.078 63.158 10.58 0.00 0.00 4.02
239 240 1.375098 CCCTCTAGACCGTCGACCAC 61.375 65.000 10.58 1.51 0.00 4.16
240 241 1.375098 CCTCTAGACCGTCGACCACC 61.375 65.000 10.58 0.00 0.00 4.61
241 242 0.675837 CTCTAGACCGTCGACCACCA 60.676 60.000 10.58 0.00 0.00 4.17
242 243 0.675837 TCTAGACCGTCGACCACCAG 60.676 60.000 10.58 1.37 0.00 4.00
243 244 0.675837 CTAGACCGTCGACCACCAGA 60.676 60.000 10.58 0.00 0.00 3.86
244 245 0.034767 TAGACCGTCGACCACCAGAT 60.035 55.000 10.58 0.00 0.00 2.90
245 246 0.898789 AGACCGTCGACCACCAGATT 60.899 55.000 10.58 0.00 0.00 2.40
246 247 0.736325 GACCGTCGACCACCAGATTG 60.736 60.000 10.58 0.00 0.00 2.67
247 248 1.183030 ACCGTCGACCACCAGATTGA 61.183 55.000 10.58 0.00 0.00 2.57
248 249 0.175760 CCGTCGACCACCAGATTGAT 59.824 55.000 10.58 0.00 0.00 2.57
249 250 1.405526 CCGTCGACCACCAGATTGATT 60.406 52.381 10.58 0.00 0.00 2.57
250 251 1.927174 CGTCGACCACCAGATTGATTC 59.073 52.381 10.58 0.00 0.00 2.52
251 252 2.280628 GTCGACCACCAGATTGATTCC 58.719 52.381 3.51 0.00 0.00 3.01
252 253 1.209504 TCGACCACCAGATTGATTCCC 59.790 52.381 0.00 0.00 0.00 3.97
253 254 1.668419 GACCACCAGATTGATTCCCG 58.332 55.000 0.00 0.00 0.00 5.14
254 255 0.255890 ACCACCAGATTGATTCCCGG 59.744 55.000 0.00 0.00 0.00 5.73
255 256 1.103398 CCACCAGATTGATTCCCGGC 61.103 60.000 0.00 0.00 0.00 6.13
256 257 1.153168 ACCAGATTGATTCCCGGCG 60.153 57.895 0.00 0.00 0.00 6.46
257 258 2.546494 CCAGATTGATTCCCGGCGC 61.546 63.158 0.00 0.00 0.00 6.53
258 259 1.819208 CAGATTGATTCCCGGCGCA 60.819 57.895 10.83 0.00 0.00 6.09
259 260 1.819632 AGATTGATTCCCGGCGCAC 60.820 57.895 10.83 0.00 0.00 5.34
260 261 2.828549 ATTGATTCCCGGCGCACC 60.829 61.111 10.83 0.00 0.00 5.01
282 283 3.334891 CCCCCACCCGAACCATCA 61.335 66.667 0.00 0.00 0.00 3.07
283 284 2.760477 CCCCACCCGAACCATCAA 59.240 61.111 0.00 0.00 0.00 2.57
284 285 1.677633 CCCCACCCGAACCATCAAC 60.678 63.158 0.00 0.00 0.00 3.18
285 286 1.378762 CCCACCCGAACCATCAACT 59.621 57.895 0.00 0.00 0.00 3.16
286 287 0.251165 CCCACCCGAACCATCAACTT 60.251 55.000 0.00 0.00 0.00 2.66
287 288 1.616159 CCACCCGAACCATCAACTTT 58.384 50.000 0.00 0.00 0.00 2.66
288 289 1.960689 CCACCCGAACCATCAACTTTT 59.039 47.619 0.00 0.00 0.00 2.27
289 290 2.030274 CCACCCGAACCATCAACTTTTC 60.030 50.000 0.00 0.00 0.00 2.29
290 291 1.877443 ACCCGAACCATCAACTTTTCG 59.123 47.619 0.00 0.00 40.39 3.46
291 292 2.147958 CCCGAACCATCAACTTTTCGA 58.852 47.619 4.24 0.00 42.72 3.71
292 293 2.095919 CCCGAACCATCAACTTTTCGAC 60.096 50.000 4.24 0.00 42.72 4.20
293 294 2.806244 CCGAACCATCAACTTTTCGACT 59.194 45.455 4.24 0.00 42.72 4.18
294 295 3.120649 CCGAACCATCAACTTTTCGACTC 60.121 47.826 4.24 0.00 42.72 3.36
295 296 3.421826 CGAACCATCAACTTTTCGACTCG 60.422 47.826 0.00 0.00 42.72 4.18
296 297 1.798813 ACCATCAACTTTTCGACTCGC 59.201 47.619 0.00 0.00 0.00 5.03
297 298 1.128692 CCATCAACTTTTCGACTCGCC 59.871 52.381 0.00 0.00 0.00 5.54
298 299 2.069273 CATCAACTTTTCGACTCGCCT 58.931 47.619 0.00 0.00 0.00 5.52
299 300 1.779569 TCAACTTTTCGACTCGCCTC 58.220 50.000 0.00 0.00 0.00 4.70
300 301 0.435008 CAACTTTTCGACTCGCCTCG 59.565 55.000 0.00 0.00 34.83 4.63
301 302 1.282930 AACTTTTCGACTCGCCTCGC 61.283 55.000 0.00 0.00 33.47 5.03
302 303 2.431942 TTTTCGACTCGCCTCGCC 60.432 61.111 0.00 0.00 33.47 5.54
303 304 4.771356 TTTCGACTCGCCTCGCCG 62.771 66.667 0.00 0.00 33.47 6.46
327 328 2.347490 CCGCTAGGTGTGGCTTGT 59.653 61.111 0.00 0.00 39.73 3.16
328 329 1.302511 CCGCTAGGTGTGGCTTGTT 60.303 57.895 0.00 0.00 39.73 2.83
329 330 1.298859 CCGCTAGGTGTGGCTTGTTC 61.299 60.000 0.00 0.00 39.73 3.18
330 331 1.298859 CGCTAGGTGTGGCTTGTTCC 61.299 60.000 0.00 0.00 0.00 3.62
331 332 0.036875 GCTAGGTGTGGCTTGTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
332 333 1.278127 GCTAGGTGTGGCTTGTTCCTA 59.722 52.381 0.00 0.00 0.00 2.94
333 334 2.678190 GCTAGGTGTGGCTTGTTCCTAG 60.678 54.545 10.94 10.94 45.97 3.02
334 335 0.036875 AGGTGTGGCTTGTTCCTAGC 59.963 55.000 0.00 0.00 37.91 3.42
335 336 0.036875 GGTGTGGCTTGTTCCTAGCT 59.963 55.000 0.00 0.00 38.67 3.32
336 337 1.160137 GTGTGGCTTGTTCCTAGCTG 58.840 55.000 0.00 0.00 38.67 4.24
337 338 1.055849 TGTGGCTTGTTCCTAGCTGA 58.944 50.000 0.00 0.00 38.67 4.26
338 339 1.002430 TGTGGCTTGTTCCTAGCTGAG 59.998 52.381 0.00 0.00 38.67 3.35
340 341 0.615850 GGCTTGTTCCTAGCTGAGGT 59.384 55.000 0.00 0.00 46.76 3.85
341 342 1.406205 GGCTTGTTCCTAGCTGAGGTC 60.406 57.143 0.00 0.00 46.76 3.85
342 343 1.552792 GCTTGTTCCTAGCTGAGGTCT 59.447 52.381 0.00 0.00 46.76 3.85
343 344 2.027653 GCTTGTTCCTAGCTGAGGTCTT 60.028 50.000 0.00 0.00 46.76 3.01
344 345 3.594134 CTTGTTCCTAGCTGAGGTCTTG 58.406 50.000 0.00 0.00 46.76 3.02
345 346 1.276421 TGTTCCTAGCTGAGGTCTTGC 59.724 52.381 0.00 0.00 46.76 4.01
346 347 0.905357 TTCCTAGCTGAGGTCTTGCC 59.095 55.000 0.00 0.00 46.76 4.52
347 348 1.142748 CCTAGCTGAGGTCTTGCCG 59.857 63.158 0.00 0.00 43.70 5.69
348 349 1.142748 CTAGCTGAGGTCTTGCCGG 59.857 63.158 0.00 0.00 43.70 6.13
349 350 1.608717 CTAGCTGAGGTCTTGCCGGT 61.609 60.000 1.90 0.00 43.70 5.28
350 351 1.888436 TAGCTGAGGTCTTGCCGGTG 61.888 60.000 1.90 0.00 43.70 4.94
351 352 2.743718 CTGAGGTCTTGCCGGTGT 59.256 61.111 1.90 0.00 43.70 4.16
352 353 1.374758 CTGAGGTCTTGCCGGTGTC 60.375 63.158 1.90 0.00 43.70 3.67
353 354 2.047179 GAGGTCTTGCCGGTGTCC 60.047 66.667 1.90 1.30 43.70 4.02
354 355 3.607370 GAGGTCTTGCCGGTGTCCC 62.607 68.421 1.90 0.00 43.70 4.46
355 356 4.717313 GGTCTTGCCGGTGTCCCC 62.717 72.222 1.90 0.00 0.00 4.81
356 357 3.948719 GTCTTGCCGGTGTCCCCA 61.949 66.667 1.90 0.00 0.00 4.96
357 358 3.172106 TCTTGCCGGTGTCCCCAA 61.172 61.111 1.90 0.00 0.00 4.12
358 359 2.203422 CTTGCCGGTGTCCCCAAA 60.203 61.111 1.90 0.00 0.00 3.28
359 360 2.519780 TTGCCGGTGTCCCCAAAC 60.520 61.111 1.90 0.00 0.00 2.93
360 361 4.589675 TGCCGGTGTCCCCAAACC 62.590 66.667 1.90 0.00 0.00 3.27
361 362 4.280019 GCCGGTGTCCCCAAACCT 62.280 66.667 1.90 0.00 34.06 3.50
362 363 2.033602 CCGGTGTCCCCAAACCTC 59.966 66.667 0.00 0.00 34.06 3.85
363 364 2.358247 CGGTGTCCCCAAACCTCG 60.358 66.667 0.00 0.00 34.06 4.63
364 365 2.671963 GGTGTCCCCAAACCTCGC 60.672 66.667 0.00 0.00 33.40 5.03
365 366 2.430367 GTGTCCCCAAACCTCGCT 59.570 61.111 0.00 0.00 0.00 4.93
366 367 1.228154 GTGTCCCCAAACCTCGCTT 60.228 57.895 0.00 0.00 0.00 4.68
367 368 1.072505 TGTCCCCAAACCTCGCTTC 59.927 57.895 0.00 0.00 0.00 3.86
368 369 2.033194 GTCCCCAAACCTCGCTTCG 61.033 63.158 0.00 0.00 0.00 3.79
369 370 3.431725 CCCCAAACCTCGCTTCGC 61.432 66.667 0.00 0.00 0.00 4.70
370 371 2.358737 CCCAAACCTCGCTTCGCT 60.359 61.111 0.00 0.00 0.00 4.93
371 372 2.391389 CCCAAACCTCGCTTCGCTC 61.391 63.158 0.00 0.00 0.00 5.03
372 373 2.730672 CCAAACCTCGCTTCGCTCG 61.731 63.158 0.00 0.00 0.00 5.03
373 374 3.112709 AAACCTCGCTTCGCTCGC 61.113 61.111 0.00 0.00 0.00 5.03
396 397 3.780693 CGACGCCGTCATTGATGT 58.219 55.556 18.40 0.00 32.09 3.06
397 398 1.631072 CGACGCCGTCATTGATGTC 59.369 57.895 18.40 3.87 32.09 3.06
398 399 1.631072 GACGCCGTCATTGATGTCG 59.369 57.895 13.23 7.69 38.66 4.35
403 404 2.754648 CGTCATTGATGTCGGTGCT 58.245 52.632 3.28 0.00 36.08 4.40
404 405 0.647410 CGTCATTGATGTCGGTGCTC 59.353 55.000 3.28 0.00 36.08 4.26
405 406 1.009829 GTCATTGATGTCGGTGCTCC 58.990 55.000 0.00 0.00 0.00 4.70
428 429 2.335712 GGTTGCTGCTTCCTTCCCG 61.336 63.158 0.00 0.00 0.00 5.14
464 465 4.007659 TCCTCTTTCAAATTTAGGCGACC 58.992 43.478 0.00 0.00 0.00 4.79
499 500 2.756760 ACTGCAATATGAAGTGCCAAGG 59.243 45.455 0.00 0.00 45.98 3.61
596 602 2.368192 TAGTGGGGGAGCATGGGG 60.368 66.667 0.00 0.00 0.00 4.96
720 728 3.608941 GCAACAGAGCAGCTTCTTTCTTC 60.609 47.826 0.00 0.00 0.00 2.87
724 732 3.814283 CAGAGCAGCTTCTTTCTTCTGTT 59.186 43.478 0.00 0.00 0.00 3.16
727 735 5.468409 AGAGCAGCTTCTTTCTTCTGTTAAC 59.532 40.000 0.00 0.00 0.00 2.01
931 978 4.101585 TCTCTTGCTCACCTCTTTTCTGAA 59.898 41.667 0.00 0.00 0.00 3.02
943 990 4.137543 TCTTTTCTGAACTTGCTTCTCCC 58.862 43.478 0.00 0.00 0.00 4.30
989 1036 1.826385 CCACTTCACATCTTCCCACC 58.174 55.000 0.00 0.00 0.00 4.61
1364 1444 0.250295 AGTGCCGCACAAGAAAGCTA 60.250 50.000 24.97 0.00 36.74 3.32
1366 1446 1.234615 TGCCGCACAAGAAAGCTACC 61.235 55.000 0.00 0.00 0.00 3.18
1367 1447 1.923227 GCCGCACAAGAAAGCTACCC 61.923 60.000 0.00 0.00 0.00 3.69
1368 1448 1.635663 CCGCACAAGAAAGCTACCCG 61.636 60.000 0.00 0.00 0.00 5.28
1369 1449 1.635663 CGCACAAGAAAGCTACCCGG 61.636 60.000 0.00 0.00 0.00 5.73
1371 1451 1.002502 ACAAGAAAGCTACCCGGCC 60.003 57.895 0.00 0.00 0.00 6.13
1373 1453 2.288025 AAGAAAGCTACCCGGCCGA 61.288 57.895 30.73 5.58 0.00 5.54
1746 1841 1.755008 CGAGGAGGAGGTGGAGGTC 60.755 68.421 0.00 0.00 0.00 3.85
1848 1943 2.410262 GCTCGTCATCAACAAGTTCGTG 60.410 50.000 0.00 0.00 0.00 4.35
1875 1976 1.743252 GCCCTTCACCTTCGAGCAG 60.743 63.158 0.00 0.00 0.00 4.24
1878 1979 1.743252 CTTCACCTTCGAGCAGGCC 60.743 63.158 2.92 0.00 37.47 5.19
2046 2159 0.798771 GCGATGACAGTGACGAGGAC 60.799 60.000 0.00 0.00 0.00 3.85
2049 2162 0.805614 ATGACAGTGACGAGGACGAG 59.194 55.000 0.00 0.00 42.66 4.18
2265 2387 3.854459 GCGCTCGCCCGAAGAAAG 61.854 66.667 0.00 0.00 34.56 2.62
2266 2388 3.854459 CGCTCGCCCGAAGAAAGC 61.854 66.667 0.00 0.00 0.00 3.51
2267 2389 2.742372 GCTCGCCCGAAGAAAGCA 60.742 61.111 0.00 0.00 33.21 3.91
2269 2391 1.852067 GCTCGCCCGAAGAAAGCAAA 61.852 55.000 0.00 0.00 33.21 3.68
2270 2392 0.591170 CTCGCCCGAAGAAAGCAAAA 59.409 50.000 0.00 0.00 0.00 2.44
2272 2394 0.663269 CGCCCGAAGAAAGCAAAACC 60.663 55.000 0.00 0.00 0.00 3.27
2275 2397 1.599419 CCCGAAGAAAGCAAAACCACG 60.599 52.381 0.00 0.00 0.00 4.94
2276 2398 1.332375 CCGAAGAAAGCAAAACCACGA 59.668 47.619 0.00 0.00 0.00 4.35
2277 2399 2.602217 CCGAAGAAAGCAAAACCACGAG 60.602 50.000 0.00 0.00 0.00 4.18
2278 2400 2.286833 CGAAGAAAGCAAAACCACGAGA 59.713 45.455 0.00 0.00 0.00 4.04
2279 2401 3.618698 GAAGAAAGCAAAACCACGAGAC 58.381 45.455 0.00 0.00 0.00 3.36
2280 2402 2.639065 AGAAAGCAAAACCACGAGACA 58.361 42.857 0.00 0.00 0.00 3.41
2283 2405 2.844122 AGCAAAACCACGAGACAAAC 57.156 45.000 0.00 0.00 0.00 2.93
2301 2423 5.531634 ACAAACACATGTCCAATCAATCAC 58.468 37.500 0.00 0.00 0.00 3.06
2302 2424 4.789012 AACACATGTCCAATCAATCACC 57.211 40.909 0.00 0.00 0.00 4.02
2341 2463 1.014352 AATGCGATAGTTCGGTTGCC 58.986 50.000 0.00 0.00 45.59 4.52
2342 2464 0.107897 ATGCGATAGTTCGGTTGCCA 60.108 50.000 0.00 0.00 45.59 4.92
2389 2540 2.564947 CCCAGATAGTTAGCCTAGCCAG 59.435 54.545 0.00 0.00 32.25 4.85
2396 2547 2.090719 AGTTAGCCTAGCCAGTGGGATA 60.091 50.000 12.15 0.00 35.59 2.59
2397 2548 2.704065 GTTAGCCTAGCCAGTGGGATAA 59.296 50.000 12.15 0.30 35.44 1.75
2398 2549 2.124560 AGCCTAGCCAGTGGGATAAT 57.875 50.000 12.15 0.00 33.94 1.28
2399 2550 3.275848 AGCCTAGCCAGTGGGATAATA 57.724 47.619 12.15 0.00 33.94 0.98
2401 2552 3.328050 AGCCTAGCCAGTGGGATAATAAC 59.672 47.826 12.15 0.00 33.94 1.89
2402 2553 3.559384 GCCTAGCCAGTGGGATAATAACC 60.559 52.174 12.15 0.00 33.94 2.85
2403 2554 3.910627 CCTAGCCAGTGGGATAATAACCT 59.089 47.826 12.15 0.00 33.94 3.50
2404 2555 4.020128 CCTAGCCAGTGGGATAATAACCTC 60.020 50.000 12.15 0.00 33.94 3.85
2405 2556 3.393687 AGCCAGTGGGATAATAACCTCA 58.606 45.455 12.15 0.00 35.59 3.86
2653 2816 7.066284 AACAGATTGTTGGCTGTATAACAGATC 59.934 37.037 11.14 4.14 42.95 2.75
2715 2888 4.148825 GATGAGGTCGTGCCGCCT 62.149 66.667 9.16 9.16 43.70 5.52
2716 2889 2.758327 ATGAGGTCGTGCCGCCTA 60.758 61.111 9.30 2.61 43.70 3.93
2758 2934 0.376152 GAGAAGATCGTGACGGCGTA 59.624 55.000 14.74 0.00 0.00 4.42
2759 2935 0.098376 AGAAGATCGTGACGGCGTAC 59.902 55.000 14.74 10.91 0.00 3.67
2795 2975 2.272678 TCGACGTGCTTTGAGACAAAA 58.727 42.857 0.00 0.00 0.00 2.44
2818 2998 0.531974 GACATAGGGGATGCGCGAAA 60.532 55.000 12.10 0.00 39.39 3.46
2895 3078 3.003478 GGAACGGTTAGATGCGCG 58.997 61.111 0.00 0.00 0.00 6.86
2924 3111 0.108709 TTTTGCCGCCTCATGCATTC 60.109 50.000 0.00 0.00 41.33 2.67
2932 3119 1.813092 GCCTCATGCATTCCTCGATGT 60.813 52.381 0.00 0.00 40.77 3.06
2937 3124 1.026182 TGCATTCCTCGATGTGTGCC 61.026 55.000 13.76 2.43 0.00 5.01
2943 3130 1.176527 CCTCGATGTGTGCCCATTTT 58.823 50.000 0.00 0.00 0.00 1.82
2946 3133 0.887247 CGATGTGTGCCCATTTTCCA 59.113 50.000 0.00 0.00 0.00 3.53
2947 3134 1.135315 CGATGTGTGCCCATTTTCCAG 60.135 52.381 0.00 0.00 0.00 3.86
2948 3135 2.170166 GATGTGTGCCCATTTTCCAGA 58.830 47.619 0.00 0.00 0.00 3.86
2998 3185 3.132160 TCGCCAAAAGTACGAAACATCA 58.868 40.909 0.00 0.00 31.97 3.07
3002 3189 6.092944 TCGCCAAAAGTACGAAACATCATAAT 59.907 34.615 0.00 0.00 31.97 1.28
3003 3190 7.278203 TCGCCAAAAGTACGAAACATCATAATA 59.722 33.333 0.00 0.00 31.97 0.98
3004 3191 7.906010 CGCCAAAAGTACGAAACATCATAATAA 59.094 33.333 0.00 0.00 0.00 1.40
3005 3192 9.562583 GCCAAAAGTACGAAACATCATAATAAA 57.437 29.630 0.00 0.00 0.00 1.40
3046 3233 2.015587 GATGTCTCGTTCCTAGACCGT 58.984 52.381 0.00 0.00 42.24 4.83
3050 3237 1.081892 CTCGTTCCTAGACCGTCGAA 58.918 55.000 0.00 0.00 0.00 3.71
3051 3238 1.669779 CTCGTTCCTAGACCGTCGAAT 59.330 52.381 0.00 0.00 0.00 3.34
3055 3242 1.386533 TCCTAGACCGTCGAATGACC 58.613 55.000 0.00 0.00 42.37 4.02
3065 3252 1.216977 CGAATGACCAGTACCGCCA 59.783 57.895 0.00 0.00 0.00 5.69
3067 3254 1.742411 CGAATGACCAGTACCGCCATT 60.742 52.381 0.00 0.00 0.00 3.16
3080 3267 1.359848 CGCCATTAGAACGAGCTTGT 58.640 50.000 0.00 0.00 0.00 3.16
3086 3273 2.232756 TAGAACGAGCTTGTGCACAA 57.767 45.000 29.36 29.36 42.74 3.33
3108 3295 2.463553 CGATAAGTCGCTACACCGAA 57.536 50.000 0.00 0.00 41.49 4.30
3127 3315 0.610687 AGAGTGTCTAGTTGCTGCCC 59.389 55.000 0.00 0.00 0.00 5.36
3130 3318 1.005037 TGTCTAGTTGCTGCCCACG 60.005 57.895 0.00 0.00 0.00 4.94
3131 3319 1.004918 GTCTAGTTGCTGCCCACGT 60.005 57.895 0.00 0.00 0.00 4.49
3132 3320 0.602905 GTCTAGTTGCTGCCCACGTT 60.603 55.000 0.00 0.00 0.00 3.99
3134 3322 0.602638 CTAGTTGCTGCCCACGTTCA 60.603 55.000 0.00 0.00 0.00 3.18
3135 3323 0.036164 TAGTTGCTGCCCACGTTCAT 59.964 50.000 0.00 0.00 0.00 2.57
3136 3324 1.081242 GTTGCTGCCCACGTTCATG 60.081 57.895 0.00 0.00 0.00 3.07
3137 3325 2.918345 TTGCTGCCCACGTTCATGC 61.918 57.895 0.00 0.00 0.00 4.06
3139 3327 1.745115 GCTGCCCACGTTCATGCTA 60.745 57.895 0.00 0.00 0.00 3.49
3140 3328 1.097547 GCTGCCCACGTTCATGCTAT 61.098 55.000 0.00 0.00 0.00 2.97
3141 3329 0.940126 CTGCCCACGTTCATGCTATC 59.060 55.000 0.00 0.00 0.00 2.08
3142 3330 0.809636 TGCCCACGTTCATGCTATCG 60.810 55.000 0.00 0.00 0.00 2.92
3156 3351 3.451526 TGCTATCGAGAATGCAAGTCTG 58.548 45.455 7.94 2.09 43.97 3.51
3164 3359 4.631377 CGAGAATGCAAGTCTGATTTACCA 59.369 41.667 7.94 0.00 43.97 3.25
3165 3360 5.122239 CGAGAATGCAAGTCTGATTTACCAA 59.878 40.000 7.94 0.00 43.97 3.67
3169 3364 3.763360 TGCAAGTCTGATTTACCAATGGG 59.237 43.478 3.55 0.00 41.29 4.00
3199 3394 8.785184 AAATCTAGTACTAACTAAGGGCATCT 57.215 34.615 3.76 0.00 37.75 2.90
3200 3395 8.411991 AATCTAGTACTAACTAAGGGCATCTC 57.588 38.462 3.76 0.00 37.75 2.75
3201 3396 7.151694 TCTAGTACTAACTAAGGGCATCTCT 57.848 40.000 3.76 0.00 37.75 3.10
3202 3397 8.272659 TCTAGTACTAACTAAGGGCATCTCTA 57.727 38.462 3.76 0.00 37.75 2.43
3203 3398 8.377034 TCTAGTACTAACTAAGGGCATCTCTAG 58.623 40.741 3.76 0.00 37.75 2.43
3204 3399 5.771165 AGTACTAACTAAGGGCATCTCTAGC 59.229 44.000 0.00 0.00 32.84 3.42
3205 3400 7.198074 AGTACTAACTAAGGGCATCTCTAGCC 61.198 46.154 0.00 0.00 42.22 3.93
3211 3406 3.523806 GGCATCTCTAGCCGATTCC 57.476 57.895 0.00 0.00 43.15 3.01
3212 3407 0.972883 GGCATCTCTAGCCGATTCCT 59.027 55.000 0.00 0.00 43.15 3.36
3213 3408 1.346068 GGCATCTCTAGCCGATTCCTT 59.654 52.381 0.00 0.00 43.15 3.36
3214 3409 2.563179 GGCATCTCTAGCCGATTCCTTA 59.437 50.000 0.00 0.00 43.15 2.69
3215 3410 3.006967 GGCATCTCTAGCCGATTCCTTAA 59.993 47.826 0.00 0.00 43.15 1.85
3216 3411 4.503296 GGCATCTCTAGCCGATTCCTTAAA 60.503 45.833 0.00 0.00 43.15 1.52
3217 3412 5.057149 GCATCTCTAGCCGATTCCTTAAAA 58.943 41.667 0.00 0.00 0.00 1.52
3218 3413 5.178438 GCATCTCTAGCCGATTCCTTAAAAG 59.822 44.000 0.00 0.00 0.00 2.27
3219 3414 5.934402 TCTCTAGCCGATTCCTTAAAAGT 57.066 39.130 0.00 0.00 0.00 2.66
3220 3415 6.295719 TCTCTAGCCGATTCCTTAAAAGTT 57.704 37.500 0.00 0.00 0.00 2.66
3221 3416 7.414222 TCTCTAGCCGATTCCTTAAAAGTTA 57.586 36.000 0.00 0.00 0.00 2.24
3222 3417 7.844009 TCTCTAGCCGATTCCTTAAAAGTTAA 58.156 34.615 0.00 0.00 0.00 2.01
3223 3418 7.980099 TCTCTAGCCGATTCCTTAAAAGTTAAG 59.020 37.037 1.50 1.50 0.00 1.85
3224 3419 7.046033 TCTAGCCGATTCCTTAAAAGTTAAGG 58.954 38.462 17.25 17.25 44.11 2.69
3225 3420 4.948004 AGCCGATTCCTTAAAAGTTAAGGG 59.052 41.667 21.18 9.93 43.21 3.95
3226 3421 4.945543 GCCGATTCCTTAAAAGTTAAGGGA 59.054 41.667 21.18 15.92 43.21 4.20
3227 3422 5.066117 GCCGATTCCTTAAAAGTTAAGGGAG 59.934 44.000 21.18 12.53 43.21 4.30
3228 3423 6.178324 CCGATTCCTTAAAAGTTAAGGGAGT 58.822 40.000 21.18 11.07 43.21 3.85
3229 3424 7.333323 CCGATTCCTTAAAAGTTAAGGGAGTA 58.667 38.462 21.18 9.32 43.21 2.59
3230 3425 7.825761 CCGATTCCTTAAAAGTTAAGGGAGTAA 59.174 37.037 21.18 11.83 43.21 2.24
3231 3426 9.223099 CGATTCCTTAAAAGTTAAGGGAGTAAA 57.777 33.333 21.18 11.55 43.21 2.01
3234 3429 8.696043 TCCTTAAAAGTTAAGGGAGTAAAACC 57.304 34.615 21.18 0.00 43.21 3.27
3235 3430 8.505246 TCCTTAAAAGTTAAGGGAGTAAAACCT 58.495 33.333 21.18 0.00 43.21 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.822306 CGACTACACGCATGGTTGT 58.178 52.632 0.00 0.00 0.00 3.32
9 10 1.710013 AATTGACCTGCGACTACACG 58.290 50.000 0.00 0.00 0.00 4.49
10 11 4.483476 AAAAATTGACCTGCGACTACAC 57.517 40.909 0.00 0.00 0.00 2.90
31 32 8.175925 TGGATTCACATATGACTGTTCAAAAA 57.824 30.769 10.38 0.00 34.61 1.94
32 33 7.757941 TGGATTCACATATGACTGTTCAAAA 57.242 32.000 10.38 0.00 34.61 2.44
33 34 7.757941 TTGGATTCACATATGACTGTTCAAA 57.242 32.000 10.38 0.00 34.61 2.69
34 35 7.148035 CCATTGGATTCACATATGACTGTTCAA 60.148 37.037 10.38 7.55 34.61 2.69
35 36 6.319405 CCATTGGATTCACATATGACTGTTCA 59.681 38.462 10.38 0.00 33.38 3.18
36 37 6.732154 CCATTGGATTCACATATGACTGTTC 58.268 40.000 10.38 0.99 33.38 3.18
37 38 5.068198 GCCATTGGATTCACATATGACTGTT 59.932 40.000 10.38 0.00 33.38 3.16
38 39 4.581824 GCCATTGGATTCACATATGACTGT 59.418 41.667 10.38 0.00 33.38 3.55
39 40 4.022589 GGCCATTGGATTCACATATGACTG 60.023 45.833 10.38 0.00 33.38 3.51
40 41 4.147321 GGCCATTGGATTCACATATGACT 58.853 43.478 10.38 0.00 33.38 3.41
41 42 3.890756 TGGCCATTGGATTCACATATGAC 59.109 43.478 10.38 0.00 33.38 3.06
42 43 4.181799 TGGCCATTGGATTCACATATGA 57.818 40.909 10.38 0.00 0.00 2.15
43 44 4.940905 TTGGCCATTGGATTCACATATG 57.059 40.909 6.09 0.00 0.00 1.78
44 45 6.292923 CAATTTGGCCATTGGATTCACATAT 58.707 36.000 6.09 0.00 31.43 1.78
45 46 5.672503 CAATTTGGCCATTGGATTCACATA 58.327 37.500 6.09 0.00 31.43 2.29
46 47 4.519213 CAATTTGGCCATTGGATTCACAT 58.481 39.130 6.09 0.00 31.43 3.21
47 48 3.869140 GCAATTTGGCCATTGGATTCACA 60.869 43.478 18.49 0.00 35.07 3.58
48 49 2.679336 GCAATTTGGCCATTGGATTCAC 59.321 45.455 18.49 0.00 35.07 3.18
49 50 2.572556 AGCAATTTGGCCATTGGATTCA 59.427 40.909 18.49 0.00 35.07 2.57
50 51 3.271055 AGCAATTTGGCCATTGGATTC 57.729 42.857 18.49 4.26 35.07 2.52
51 52 3.724732 AAGCAATTTGGCCATTGGATT 57.275 38.095 18.49 9.17 35.07 3.01
52 53 3.264964 AGAAAGCAATTTGGCCATTGGAT 59.735 39.130 18.49 3.80 35.07 3.41
53 54 2.638855 AGAAAGCAATTTGGCCATTGGA 59.361 40.909 18.49 0.00 35.07 3.53
54 55 3.062122 AGAAAGCAATTTGGCCATTGG 57.938 42.857 18.49 0.00 35.07 3.16
55 56 4.066490 TGAAGAAAGCAATTTGGCCATTG 58.934 39.130 6.09 10.96 37.23 2.82
56 57 4.354893 TGAAGAAAGCAATTTGGCCATT 57.645 36.364 6.09 0.00 0.00 3.16
57 58 4.020039 TGATGAAGAAAGCAATTTGGCCAT 60.020 37.500 6.09 0.00 0.00 4.40
58 59 3.324268 TGATGAAGAAAGCAATTTGGCCA 59.676 39.130 0.00 0.00 0.00 5.36
59 60 3.929094 TGATGAAGAAAGCAATTTGGCC 58.071 40.909 0.00 0.00 0.00 5.36
60 61 6.490566 AAATGATGAAGAAAGCAATTTGGC 57.509 33.333 0.00 0.00 0.00 4.52
61 62 8.319143 AGAAAATGATGAAGAAAGCAATTTGG 57.681 30.769 0.00 0.00 0.00 3.28
62 63 8.440833 GGAGAAAATGATGAAGAAAGCAATTTG 58.559 33.333 0.00 0.00 0.00 2.32
63 64 7.605309 GGGAGAAAATGATGAAGAAAGCAATTT 59.395 33.333 0.00 0.00 0.00 1.82
64 65 7.101700 GGGAGAAAATGATGAAGAAAGCAATT 58.898 34.615 0.00 0.00 0.00 2.32
65 66 6.211986 TGGGAGAAAATGATGAAGAAAGCAAT 59.788 34.615 0.00 0.00 0.00 3.56
66 67 5.539574 TGGGAGAAAATGATGAAGAAAGCAA 59.460 36.000 0.00 0.00 0.00 3.91
67 68 5.078949 TGGGAGAAAATGATGAAGAAAGCA 58.921 37.500 0.00 0.00 0.00 3.91
68 69 5.649782 TGGGAGAAAATGATGAAGAAAGC 57.350 39.130 0.00 0.00 0.00 3.51
69 70 7.263496 GGATTGGGAGAAAATGATGAAGAAAG 58.737 38.462 0.00 0.00 0.00 2.62
70 71 6.127647 CGGATTGGGAGAAAATGATGAAGAAA 60.128 38.462 0.00 0.00 0.00 2.52
71 72 5.357878 CGGATTGGGAGAAAATGATGAAGAA 59.642 40.000 0.00 0.00 0.00 2.52
72 73 4.883585 CGGATTGGGAGAAAATGATGAAGA 59.116 41.667 0.00 0.00 0.00 2.87
73 74 4.641989 ACGGATTGGGAGAAAATGATGAAG 59.358 41.667 0.00 0.00 0.00 3.02
74 75 4.599041 ACGGATTGGGAGAAAATGATGAA 58.401 39.130 0.00 0.00 0.00 2.57
75 76 4.199310 GACGGATTGGGAGAAAATGATGA 58.801 43.478 0.00 0.00 0.00 2.92
76 77 3.947196 TGACGGATTGGGAGAAAATGATG 59.053 43.478 0.00 0.00 0.00 3.07
77 78 4.202441 CTGACGGATTGGGAGAAAATGAT 58.798 43.478 0.00 0.00 0.00 2.45
78 79 3.009033 ACTGACGGATTGGGAGAAAATGA 59.991 43.478 0.00 0.00 0.00 2.57
79 80 3.127548 CACTGACGGATTGGGAGAAAATG 59.872 47.826 0.00 0.00 0.00 2.32
80 81 3.009033 TCACTGACGGATTGGGAGAAAAT 59.991 43.478 0.00 0.00 0.00 1.82
81 82 2.370519 TCACTGACGGATTGGGAGAAAA 59.629 45.455 0.00 0.00 0.00 2.29
82 83 1.974957 TCACTGACGGATTGGGAGAAA 59.025 47.619 0.00 0.00 0.00 2.52
83 84 1.275291 GTCACTGACGGATTGGGAGAA 59.725 52.381 0.00 0.00 0.00 2.87
84 85 0.895530 GTCACTGACGGATTGGGAGA 59.104 55.000 0.00 0.00 0.00 3.71
85 86 0.108138 GGTCACTGACGGATTGGGAG 60.108 60.000 3.04 0.00 32.65 4.30
86 87 0.834261 TGGTCACTGACGGATTGGGA 60.834 55.000 3.04 0.00 32.65 4.37
87 88 0.673644 GTGGTCACTGACGGATTGGG 60.674 60.000 3.04 0.00 32.65 4.12
88 89 0.673644 GGTGGTCACTGACGGATTGG 60.674 60.000 3.04 0.00 32.65 3.16
89 90 1.014044 CGGTGGTCACTGACGGATTG 61.014 60.000 3.99 0.00 40.06 2.67
90 91 1.292223 CGGTGGTCACTGACGGATT 59.708 57.895 3.99 0.00 40.06 3.01
91 92 2.970639 CGGTGGTCACTGACGGAT 59.029 61.111 3.99 0.00 40.06 4.18
95 96 2.951475 TTTGGCCGGTGGTCACTGAC 62.951 60.000 11.18 0.00 36.87 3.51
96 97 2.063015 ATTTGGCCGGTGGTCACTGA 62.063 55.000 11.18 0.00 36.87 3.41
97 98 1.586154 GATTTGGCCGGTGGTCACTG 61.586 60.000 1.90 3.08 36.87 3.66
98 99 1.303317 GATTTGGCCGGTGGTCACT 60.303 57.895 1.90 0.00 36.87 3.41
99 100 2.340328 GGATTTGGCCGGTGGTCAC 61.340 63.158 1.90 0.00 36.87 3.67
100 101 1.202099 TAGGATTTGGCCGGTGGTCA 61.202 55.000 1.90 0.00 34.47 4.02
101 102 0.182775 ATAGGATTTGGCCGGTGGTC 59.817 55.000 1.90 0.00 0.00 4.02
102 103 0.182775 GATAGGATTTGGCCGGTGGT 59.817 55.000 1.90 0.00 0.00 4.16
103 104 0.474184 AGATAGGATTTGGCCGGTGG 59.526 55.000 1.90 0.00 0.00 4.61
104 105 1.543429 GGAGATAGGATTTGGCCGGTG 60.543 57.143 1.90 0.00 0.00 4.94
105 106 0.765510 GGAGATAGGATTTGGCCGGT 59.234 55.000 1.90 0.00 0.00 5.28
106 107 0.764890 TGGAGATAGGATTTGGCCGG 59.235 55.000 0.00 0.00 0.00 6.13
107 108 2.222027 GTTGGAGATAGGATTTGGCCG 58.778 52.381 0.00 0.00 0.00 6.13
108 109 2.222027 CGTTGGAGATAGGATTTGGCC 58.778 52.381 0.00 0.00 0.00 5.36
109 110 1.604278 GCGTTGGAGATAGGATTTGGC 59.396 52.381 0.00 0.00 0.00 4.52
110 111 2.222027 GGCGTTGGAGATAGGATTTGG 58.778 52.381 0.00 0.00 0.00 3.28
111 112 2.222027 GGGCGTTGGAGATAGGATTTG 58.778 52.381 0.00 0.00 0.00 2.32
112 113 1.843851 TGGGCGTTGGAGATAGGATTT 59.156 47.619 0.00 0.00 0.00 2.17
113 114 1.141053 GTGGGCGTTGGAGATAGGATT 59.859 52.381 0.00 0.00 0.00 3.01
114 115 0.759346 GTGGGCGTTGGAGATAGGAT 59.241 55.000 0.00 0.00 0.00 3.24
115 116 1.672854 CGTGGGCGTTGGAGATAGGA 61.673 60.000 0.00 0.00 0.00 2.94
116 117 1.227263 CGTGGGCGTTGGAGATAGG 60.227 63.158 0.00 0.00 0.00 2.57
117 118 1.227263 CCGTGGGCGTTGGAGATAG 60.227 63.158 0.00 0.00 36.15 2.08
118 119 1.546589 AACCGTGGGCGTTGGAGATA 61.547 55.000 0.00 0.00 36.15 1.98
119 120 2.890766 AACCGTGGGCGTTGGAGAT 61.891 57.895 0.00 0.00 36.15 2.75
120 121 3.552384 AACCGTGGGCGTTGGAGA 61.552 61.111 0.00 0.00 36.15 3.71
121 122 3.353836 CAACCGTGGGCGTTGGAG 61.354 66.667 0.00 0.00 36.15 3.86
122 123 4.939368 CCAACCGTGGGCGTTGGA 62.939 66.667 14.57 0.00 44.33 3.53
131 132 3.499737 GGAGCATCGCCAACCGTG 61.500 66.667 0.00 0.00 38.35 4.94
132 133 4.778143 GGGAGCATCGCCAACCGT 62.778 66.667 0.00 0.00 43.06 4.83
141 142 4.222847 GACGGTCCCGGGAGCATC 62.223 72.222 42.72 37.14 44.69 3.91
142 143 2.866523 TAAGACGGTCCCGGGAGCAT 62.867 60.000 42.72 34.94 44.69 3.79
143 144 3.588817 TAAGACGGTCCCGGGAGCA 62.589 63.158 42.72 26.24 44.69 4.26
144 145 2.757099 TAAGACGGTCCCGGGAGC 60.757 66.667 37.69 37.69 44.69 4.70
145 146 2.421399 GGTAAGACGGTCCCGGGAG 61.421 68.421 27.72 16.80 44.69 4.30
146 147 2.362889 GGTAAGACGGTCCCGGGA 60.363 66.667 22.63 22.63 44.69 5.14
147 148 3.830192 CGGTAAGACGGTCCCGGG 61.830 72.222 16.85 16.85 44.69 5.73
148 149 4.503314 GCGGTAAGACGGTCCCGG 62.503 72.222 20.65 0.00 44.69 5.73
149 150 4.503314 GGCGGTAAGACGGTCCCG 62.503 72.222 16.73 16.73 46.03 5.14
150 151 4.152964 GGGCGGTAAGACGGTCCC 62.153 72.222 4.14 0.00 37.24 4.46
151 152 4.152964 GGGGCGGTAAGACGGTCC 62.153 72.222 4.14 0.00 41.80 4.46
152 153 4.503314 CGGGGCGGTAAGACGGTC 62.503 72.222 0.00 0.00 0.00 4.79
154 155 4.503314 GACGGGGCGGTAAGACGG 62.503 72.222 0.00 0.00 0.00 4.79
155 156 4.503314 GGACGGGGCGGTAAGACG 62.503 72.222 0.00 0.00 0.00 4.18
156 157 3.073101 AGGACGGGGCGGTAAGAC 61.073 66.667 0.00 0.00 0.00 3.01
157 158 2.757099 GAGGACGGGGCGGTAAGA 60.757 66.667 0.00 0.00 0.00 2.10
158 159 3.846430 GGAGGACGGGGCGGTAAG 61.846 72.222 0.00 0.00 0.00 2.34
167 168 4.444081 AGGTCGAGGGGAGGACGG 62.444 72.222 0.00 0.00 33.99 4.79
168 169 2.829458 GAGGTCGAGGGGAGGACG 60.829 72.222 0.00 0.00 33.99 4.79
169 170 2.442458 GGAGGTCGAGGGGAGGAC 60.442 72.222 0.00 0.00 0.00 3.85
170 171 3.752167 GGGAGGTCGAGGGGAGGA 61.752 72.222 0.00 0.00 0.00 3.71
171 172 4.862823 GGGGAGGTCGAGGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
172 173 4.862823 GGGGGAGGTCGAGGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
207 208 3.958860 GAGGGATGGCCGGGGATG 61.959 72.222 2.18 0.00 33.83 3.51
208 209 2.755439 CTAGAGGGATGGCCGGGGAT 62.755 65.000 2.18 0.00 33.83 3.85
209 210 3.444417 TAGAGGGATGGCCGGGGA 61.444 66.667 2.18 0.00 33.83 4.81
210 211 2.925170 CTAGAGGGATGGCCGGGG 60.925 72.222 2.18 0.00 33.83 5.73
211 212 2.201490 TCTAGAGGGATGGCCGGG 59.799 66.667 2.18 0.00 33.83 5.73
212 213 2.210711 GGTCTAGAGGGATGGCCGG 61.211 68.421 0.00 0.00 33.83 6.13
213 214 2.565645 CGGTCTAGAGGGATGGCCG 61.566 68.421 0.00 0.00 33.83 6.13
214 215 1.457831 ACGGTCTAGAGGGATGGCC 60.458 63.158 0.00 0.00 0.00 5.36
215 216 1.797211 CGACGGTCTAGAGGGATGGC 61.797 65.000 6.57 0.00 0.00 4.40
216 217 0.179026 TCGACGGTCTAGAGGGATGG 60.179 60.000 6.57 0.00 0.00 3.51
217 218 0.945813 GTCGACGGTCTAGAGGGATG 59.054 60.000 0.00 0.00 0.00 3.51
218 219 0.179023 GGTCGACGGTCTAGAGGGAT 60.179 60.000 9.92 0.00 0.00 3.85
219 220 1.222936 GGTCGACGGTCTAGAGGGA 59.777 63.158 9.92 0.00 0.00 4.20
220 221 1.077930 TGGTCGACGGTCTAGAGGG 60.078 63.158 9.92 0.00 0.00 4.30
221 222 1.375098 GGTGGTCGACGGTCTAGAGG 61.375 65.000 9.92 0.00 0.00 3.69
222 223 0.675837 TGGTGGTCGACGGTCTAGAG 60.676 60.000 9.92 0.00 0.00 2.43
223 224 0.675837 CTGGTGGTCGACGGTCTAGA 60.676 60.000 9.92 0.00 0.00 2.43
224 225 0.675837 TCTGGTGGTCGACGGTCTAG 60.676 60.000 9.92 9.46 0.00 2.43
225 226 0.034767 ATCTGGTGGTCGACGGTCTA 60.035 55.000 9.92 0.00 0.00 2.59
226 227 0.898789 AATCTGGTGGTCGACGGTCT 60.899 55.000 9.92 0.00 0.00 3.85
227 228 0.736325 CAATCTGGTGGTCGACGGTC 60.736 60.000 9.92 0.00 0.00 4.79
228 229 1.183030 TCAATCTGGTGGTCGACGGT 61.183 55.000 9.92 0.00 0.00 4.83
229 230 0.175760 ATCAATCTGGTGGTCGACGG 59.824 55.000 9.92 0.00 0.00 4.79
230 231 1.927174 GAATCAATCTGGTGGTCGACG 59.073 52.381 9.92 0.00 0.00 5.12
231 232 2.280628 GGAATCAATCTGGTGGTCGAC 58.719 52.381 7.13 7.13 0.00 4.20
232 233 1.209504 GGGAATCAATCTGGTGGTCGA 59.790 52.381 0.00 0.00 0.00 4.20
233 234 1.668419 GGGAATCAATCTGGTGGTCG 58.332 55.000 0.00 0.00 0.00 4.79
234 235 1.668419 CGGGAATCAATCTGGTGGTC 58.332 55.000 0.00 0.00 0.00 4.02
235 236 0.255890 CCGGGAATCAATCTGGTGGT 59.744 55.000 0.00 0.00 0.00 4.16
236 237 1.103398 GCCGGGAATCAATCTGGTGG 61.103 60.000 2.18 0.00 0.00 4.61
237 238 1.439353 CGCCGGGAATCAATCTGGTG 61.439 60.000 2.18 0.00 0.00 4.17
238 239 1.153168 CGCCGGGAATCAATCTGGT 60.153 57.895 2.18 0.00 0.00 4.00
239 240 2.546494 GCGCCGGGAATCAATCTGG 61.546 63.158 2.18 0.00 0.00 3.86
240 241 1.819208 TGCGCCGGGAATCAATCTG 60.819 57.895 4.18 0.00 0.00 2.90
241 242 1.819632 GTGCGCCGGGAATCAATCT 60.820 57.895 4.18 0.00 0.00 2.40
242 243 2.715624 GTGCGCCGGGAATCAATC 59.284 61.111 4.18 0.00 0.00 2.67
243 244 2.828549 GGTGCGCCGGGAATCAAT 60.829 61.111 4.18 0.00 0.00 2.57
265 266 2.913117 TTGATGGTTCGGGTGGGGG 61.913 63.158 0.00 0.00 0.00 5.40
266 267 1.677633 GTTGATGGTTCGGGTGGGG 60.678 63.158 0.00 0.00 0.00 4.96
267 268 0.251165 AAGTTGATGGTTCGGGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
268 269 1.616159 AAAGTTGATGGTTCGGGTGG 58.384 50.000 0.00 0.00 0.00 4.61
269 270 2.350388 CGAAAAGTTGATGGTTCGGGTG 60.350 50.000 0.00 0.00 39.27 4.61
270 271 1.877443 CGAAAAGTTGATGGTTCGGGT 59.123 47.619 0.00 0.00 39.27 5.28
271 272 2.095919 GTCGAAAAGTTGATGGTTCGGG 60.096 50.000 6.76 0.00 42.32 5.14
272 273 2.806244 AGTCGAAAAGTTGATGGTTCGG 59.194 45.455 6.76 0.00 42.32 4.30
273 274 3.421826 CGAGTCGAAAAGTTGATGGTTCG 60.422 47.826 6.73 1.12 43.17 3.95
274 275 3.664537 GCGAGTCGAAAAGTTGATGGTTC 60.665 47.826 18.61 0.00 0.00 3.62
275 276 2.223377 GCGAGTCGAAAAGTTGATGGTT 59.777 45.455 18.61 0.00 0.00 3.67
276 277 1.798813 GCGAGTCGAAAAGTTGATGGT 59.201 47.619 18.61 0.00 0.00 3.55
277 278 1.128692 GGCGAGTCGAAAAGTTGATGG 59.871 52.381 18.61 0.00 0.00 3.51
278 279 2.069273 AGGCGAGTCGAAAAGTTGATG 58.931 47.619 18.61 0.00 0.00 3.07
279 280 2.338500 GAGGCGAGTCGAAAAGTTGAT 58.662 47.619 18.61 0.00 0.00 2.57
280 281 1.779569 GAGGCGAGTCGAAAAGTTGA 58.220 50.000 18.61 0.00 0.00 3.18
281 282 0.435008 CGAGGCGAGTCGAAAAGTTG 59.565 55.000 18.61 0.00 42.85 3.16
282 283 1.282930 GCGAGGCGAGTCGAAAAGTT 61.283 55.000 18.61 0.00 42.85 2.66
283 284 1.733399 GCGAGGCGAGTCGAAAAGT 60.733 57.895 18.61 0.00 42.85 2.66
284 285 2.445438 GGCGAGGCGAGTCGAAAAG 61.445 63.158 18.61 5.44 42.85 2.27
285 286 2.431942 GGCGAGGCGAGTCGAAAA 60.432 61.111 18.61 0.00 42.85 2.29
286 287 4.771356 CGGCGAGGCGAGTCGAAA 62.771 66.667 18.61 0.00 42.85 3.46
303 304 0.317479 CCACACCTAGCGGTATAGCC 59.683 60.000 0.00 0.00 43.24 3.93
304 305 0.319641 GCCACACCTAGCGGTATAGC 60.320 60.000 0.00 0.00 43.24 2.97
305 306 1.329256 AGCCACACCTAGCGGTATAG 58.671 55.000 0.00 0.00 43.24 1.31
306 307 1.411246 CAAGCCACACCTAGCGGTATA 59.589 52.381 0.00 0.00 43.24 1.47
307 308 0.178068 CAAGCCACACCTAGCGGTAT 59.822 55.000 0.00 0.00 43.24 2.73
308 309 1.189524 ACAAGCCACACCTAGCGGTA 61.190 55.000 0.00 0.00 43.24 4.02
310 311 1.298859 GAACAAGCCACACCTAGCGG 61.299 60.000 0.00 0.00 0.00 5.52
311 312 1.298859 GGAACAAGCCACACCTAGCG 61.299 60.000 0.00 0.00 0.00 4.26
312 313 0.036875 AGGAACAAGCCACACCTAGC 59.963 55.000 0.00 0.00 0.00 3.42
313 314 3.252974 CTAGGAACAAGCCACACCTAG 57.747 52.381 0.00 0.00 42.33 3.02
314 315 1.278127 GCTAGGAACAAGCCACACCTA 59.722 52.381 0.00 0.00 33.73 3.08
315 316 0.036875 GCTAGGAACAAGCCACACCT 59.963 55.000 0.00 0.00 33.73 4.00
316 317 0.036875 AGCTAGGAACAAGCCACACC 59.963 55.000 0.00 0.00 41.02 4.16
317 318 1.160137 CAGCTAGGAACAAGCCACAC 58.840 55.000 0.00 0.00 41.02 3.82
318 319 1.002430 CTCAGCTAGGAACAAGCCACA 59.998 52.381 0.00 0.00 41.02 4.17
319 320 1.731720 CTCAGCTAGGAACAAGCCAC 58.268 55.000 0.00 0.00 41.02 5.01
330 331 1.142748 CCGGCAAGACCTCAGCTAG 59.857 63.158 0.00 0.00 35.61 3.42
331 332 1.609501 ACCGGCAAGACCTCAGCTA 60.610 57.895 0.00 0.00 35.61 3.32
332 333 2.925170 ACCGGCAAGACCTCAGCT 60.925 61.111 0.00 0.00 35.61 4.24
333 334 2.743928 CACCGGCAAGACCTCAGC 60.744 66.667 0.00 0.00 35.61 4.26
334 335 1.374758 GACACCGGCAAGACCTCAG 60.375 63.158 0.00 0.00 35.61 3.35
335 336 2.741092 GACACCGGCAAGACCTCA 59.259 61.111 0.00 0.00 35.61 3.86
336 337 2.047179 GGACACCGGCAAGACCTC 60.047 66.667 0.00 0.00 35.61 3.85
337 338 3.637273 GGGACACCGGCAAGACCT 61.637 66.667 0.00 0.00 35.61 3.85
338 339 4.717313 GGGGACACCGGCAAGACC 62.717 72.222 0.00 1.18 37.78 3.85
339 340 2.969300 TTTGGGGACACCGGCAAGAC 62.969 60.000 0.00 0.00 44.64 3.01
340 341 2.758207 TTTGGGGACACCGGCAAGA 61.758 57.895 0.00 0.00 44.64 3.02
341 342 2.203422 TTTGGGGACACCGGCAAG 60.203 61.111 0.00 0.00 44.64 4.01
342 343 2.519780 GTTTGGGGACACCGGCAA 60.520 61.111 0.00 0.00 44.64 4.52
343 344 4.589675 GGTTTGGGGACACCGGCA 62.590 66.667 0.00 0.00 44.64 5.69
344 345 4.280019 AGGTTTGGGGACACCGGC 62.280 66.667 0.00 0.00 44.64 6.13
345 346 2.033602 GAGGTTTGGGGACACCGG 59.966 66.667 0.00 0.00 44.64 5.28
346 347 2.358247 CGAGGTTTGGGGACACCG 60.358 66.667 0.00 0.00 44.64 4.94
347 348 2.671963 GCGAGGTTTGGGGACACC 60.672 66.667 0.00 0.00 42.67 4.16
348 349 1.228154 AAGCGAGGTTTGGGGACAC 60.228 57.895 0.00 0.00 42.67 3.67
349 350 1.072505 GAAGCGAGGTTTGGGGACA 59.927 57.895 0.00 0.00 39.83 4.02
350 351 2.033194 CGAAGCGAGGTTTGGGGAC 61.033 63.158 0.00 0.00 0.00 4.46
351 352 2.345991 CGAAGCGAGGTTTGGGGA 59.654 61.111 0.00 0.00 0.00 4.81
379 380 1.631072 GACATCAATGACGGCGTCG 59.369 57.895 31.90 19.59 43.02 5.12
380 381 1.631072 CGACATCAATGACGGCGTC 59.369 57.895 31.68 31.68 41.04 5.19
381 382 3.780693 CGACATCAATGACGGCGT 58.219 55.556 14.65 14.65 41.04 5.68
385 386 0.647410 GAGCACCGACATCAATGACG 59.353 55.000 7.69 7.69 43.53 4.35
386 387 1.009829 GGAGCACCGACATCAATGAC 58.990 55.000 0.00 0.00 0.00 3.06
387 388 3.458872 GGAGCACCGACATCAATGA 57.541 52.632 0.00 0.00 0.00 2.57
403 404 4.927782 AAGCAGCAACCACGCGGA 62.928 61.111 12.47 0.00 36.85 5.54
404 405 4.389576 GAAGCAGCAACCACGCGG 62.390 66.667 12.47 0.00 36.85 6.46
405 406 4.389576 GGAAGCAGCAACCACGCG 62.390 66.667 3.53 3.53 36.85 6.01
406 407 2.463675 GAAGGAAGCAGCAACCACGC 62.464 60.000 9.95 0.00 0.00 5.34
407 408 1.576421 GAAGGAAGCAGCAACCACG 59.424 57.895 9.95 0.00 0.00 4.94
408 409 1.527433 GGGAAGGAAGCAGCAACCAC 61.527 60.000 9.95 4.36 0.00 4.16
409 410 1.228552 GGGAAGGAAGCAGCAACCA 60.229 57.895 9.95 0.00 0.00 3.67
410 411 2.335712 CGGGAAGGAAGCAGCAACC 61.336 63.158 0.00 0.00 0.00 3.77
411 412 0.321298 TACGGGAAGGAAGCAGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
412 413 0.036388 CTACGGGAAGGAAGCAGCAA 60.036 55.000 0.00 0.00 0.00 3.91
415 416 2.799917 CGATTCTACGGGAAGGAAGCAG 60.800 54.545 0.00 0.00 37.36 4.24
428 429 4.202161 TGAAAGAGGATCAGCCGATTCTAC 60.202 45.833 0.00 0.00 37.63 2.59
437 438 5.586339 GCCTAAATTTGAAAGAGGATCAGC 58.414 41.667 7.94 0.00 37.82 4.26
491 492 3.658757 TGCTAAAATTCACCTTGGCAC 57.341 42.857 0.00 0.00 34.55 5.01
499 500 7.638134 TGGCATTTTCTTTTGCTAAAATTCAC 58.362 30.769 0.00 0.00 38.88 3.18
546 547 3.684788 CCACCATACTCTGTTTTCCTTCG 59.315 47.826 0.00 0.00 0.00 3.79
720 728 5.239306 TGGCTGATCTTCTTGTTGTTAACAG 59.761 40.000 8.56 0.00 43.27 3.16
724 732 4.756642 CACTGGCTGATCTTCTTGTTGTTA 59.243 41.667 0.00 0.00 0.00 2.41
727 735 3.405831 TCACTGGCTGATCTTCTTGTTG 58.594 45.455 0.00 0.00 0.00 3.33
879 921 2.690778 GCGGTGCATTTCTCGGCTT 61.691 57.895 0.00 0.00 33.49 4.35
881 923 2.855728 CTTGCGGTGCATTTCTCGGC 62.856 60.000 0.00 0.00 38.76 5.54
882 924 1.135315 CTTGCGGTGCATTTCTCGG 59.865 57.895 0.00 0.00 38.76 4.63
883 925 1.512734 GCTTGCGGTGCATTTCTCG 60.513 57.895 0.00 0.00 38.76 4.04
884 926 1.153958 GGCTTGCGGTGCATTTCTC 60.154 57.895 0.00 0.00 38.76 2.87
885 927 2.964978 GGCTTGCGGTGCATTTCT 59.035 55.556 0.00 0.00 38.76 2.52
886 928 2.504681 CGGCTTGCGGTGCATTTC 60.505 61.111 0.00 0.00 38.76 2.17
931 978 1.151810 TCCCTGGGGAGAAGCAAGT 60.152 57.895 14.00 0.00 39.76 3.16
943 990 2.437359 CGAAAGGCTGCTCCCTGG 60.437 66.667 0.00 0.00 34.80 4.45
1075 1122 2.669569 CACCACCTCCGGCTTGTG 60.670 66.667 0.00 3.50 0.00 3.33
1110 1157 0.668535 TCCATATGTCGACCTGAGCG 59.331 55.000 14.12 0.00 0.00 5.03
1113 1160 2.224281 GGCATTCCATATGTCGACCTGA 60.224 50.000 14.12 0.00 0.00 3.86
1145 1192 3.357079 CCACCTTGCTGTCCACGC 61.357 66.667 0.00 0.00 0.00 5.34
1200 1253 0.965866 TCTTCTGGCTCATCGACCGT 60.966 55.000 0.00 0.00 0.00 4.83
1449 1535 3.527427 TCGCGGCTCGACATGGAT 61.527 61.111 6.13 0.00 43.16 3.41
1467 1553 1.296392 CATCTTCAGACACGGCCCA 59.704 57.895 0.00 0.00 0.00 5.36
1746 1841 1.742880 CATGGTGCCTCTGTCCACG 60.743 63.158 0.00 0.00 33.91 4.94
1833 1928 0.950836 TGCCCACGAACTTGTTGATG 59.049 50.000 0.00 0.00 0.00 3.07
2031 2138 1.235281 CCTCGTCCTCGTCACTGTCA 61.235 60.000 0.00 0.00 38.33 3.58
2114 2233 2.355837 GCGACGTGAACAGGAGCA 60.356 61.111 0.00 0.00 0.00 4.26
2265 2387 2.182014 GTGTTTGTCTCGTGGTTTTGC 58.818 47.619 0.00 0.00 0.00 3.68
2266 2388 3.479505 TGTGTTTGTCTCGTGGTTTTG 57.520 42.857 0.00 0.00 0.00 2.44
2267 2389 3.442273 ACATGTGTTTGTCTCGTGGTTTT 59.558 39.130 0.00 0.00 32.73 2.43
2269 2391 2.612212 GACATGTGTTTGTCTCGTGGTT 59.388 45.455 1.15 0.00 42.22 3.67
2270 2392 2.210116 GACATGTGTTTGTCTCGTGGT 58.790 47.619 1.15 0.00 42.22 4.16
2272 2394 2.209273 TGGACATGTGTTTGTCTCGTG 58.791 47.619 1.15 0.00 44.39 4.35
2275 2397 5.437289 TTGATTGGACATGTGTTTGTCTC 57.563 39.130 1.15 0.00 44.39 3.36
2276 2398 5.535783 TGATTGATTGGACATGTGTTTGTCT 59.464 36.000 1.15 0.00 44.39 3.41
2277 2399 5.630680 GTGATTGATTGGACATGTGTTTGTC 59.369 40.000 1.15 0.00 44.27 3.18
2278 2400 5.509501 GGTGATTGATTGGACATGTGTTTGT 60.510 40.000 1.15 0.00 0.00 2.83
2279 2401 4.925054 GGTGATTGATTGGACATGTGTTTG 59.075 41.667 1.15 0.00 0.00 2.93
2280 2402 4.021192 GGGTGATTGATTGGACATGTGTTT 60.021 41.667 1.15 0.00 0.00 2.83
2283 2405 3.090790 TGGGTGATTGATTGGACATGTG 58.909 45.455 1.15 0.00 0.00 3.21
2290 2412 3.527533 CAAATGCTGGGTGATTGATTGG 58.472 45.455 0.00 0.00 0.00 3.16
2297 2419 0.892755 CAGTGCAAATGCTGGGTGAT 59.107 50.000 6.97 0.00 42.66 3.06
2341 2463 3.203716 GGACGGGAATAGTTTAAGCCTG 58.796 50.000 0.00 0.00 0.00 4.85
2342 2464 2.172082 GGGACGGGAATAGTTTAAGCCT 59.828 50.000 0.00 0.00 0.00 4.58
2389 2540 7.664318 ACGGATTAATTGAGGTTATTATCCCAC 59.336 37.037 0.00 0.00 0.00 4.61
2396 2547 4.583073 GGCCACGGATTAATTGAGGTTATT 59.417 41.667 0.00 0.00 0.00 1.40
2397 2548 4.142038 GGCCACGGATTAATTGAGGTTAT 58.858 43.478 0.00 0.00 0.00 1.89
2398 2549 3.054287 TGGCCACGGATTAATTGAGGTTA 60.054 43.478 0.00 0.00 0.00 2.85
2399 2550 2.291282 TGGCCACGGATTAATTGAGGTT 60.291 45.455 0.00 0.00 0.00 3.50
2401 2552 1.676006 GTGGCCACGGATTAATTGAGG 59.324 52.381 22.49 0.00 0.00 3.86
2402 2553 2.355756 CTGTGGCCACGGATTAATTGAG 59.644 50.000 37.13 17.64 40.06 3.02
2403 2554 2.290641 ACTGTGGCCACGGATTAATTGA 60.291 45.455 44.14 17.46 40.06 2.57
2404 2555 2.091541 ACTGTGGCCACGGATTAATTG 58.908 47.619 44.14 20.57 40.06 2.32
2405 2556 2.091541 CACTGTGGCCACGGATTAATT 58.908 47.619 44.14 22.86 40.06 1.40
2572 2730 1.645034 ATACATCACGAGTGCAGTGC 58.355 50.000 8.58 8.58 39.31 4.40
2573 2731 3.062639 GGAAATACATCACGAGTGCAGTG 59.937 47.826 0.00 0.00 40.71 3.66
2622 2785 9.855021 GTTATACAGCCAACAATCTGTTAATTT 57.145 29.630 0.01 0.00 38.77 1.82
2653 2816 1.865865 AATGGCAAGCCGATACTACG 58.134 50.000 6.60 0.00 39.42 3.51
2658 2821 4.203226 TGTATGAAAATGGCAAGCCGATA 58.797 39.130 6.60 0.00 39.42 2.92
2795 2975 2.041976 CGCATCCCCTATGTCTCGT 58.958 57.895 0.00 0.00 37.93 4.18
2872 3052 0.457166 CATCTAACCGTTCCGCGTGA 60.457 55.000 4.92 0.00 39.32 4.35
2873 3053 1.995991 CATCTAACCGTTCCGCGTG 59.004 57.895 4.92 0.00 39.32 5.34
2875 3055 2.856346 CGCATCTAACCGTTCCGCG 61.856 63.158 0.00 0.00 40.95 6.46
2885 3068 0.387494 TCAACGTCACGCGCATCTAA 60.387 50.000 5.73 0.00 46.11 2.10
2893 3076 1.327292 CGGCAAAATCAACGTCACGC 61.327 55.000 0.00 0.00 0.00 5.34
2895 3078 1.001745 GGCGGCAAAATCAACGTCAC 61.002 55.000 3.07 0.00 0.00 3.67
2924 3111 1.133025 GAAAATGGGCACACATCGAGG 59.867 52.381 0.00 0.00 0.00 4.63
2969 3156 5.927954 TCGTACTTTTGGCGAACTTTTAT 57.072 34.783 0.00 0.00 0.00 1.40
2979 3166 9.562583 TTTATTATGATGTTTCGTACTTTTGGC 57.437 29.630 0.00 0.00 0.00 4.52
3036 3223 1.340308 TGGTCATTCGACGGTCTAGGA 60.340 52.381 6.57 0.00 43.61 2.94
3037 3224 1.065701 CTGGTCATTCGACGGTCTAGG 59.934 57.143 6.57 0.00 43.61 3.02
3046 3233 1.252215 TGGCGGTACTGGTCATTCGA 61.252 55.000 3.34 0.00 0.00 3.71
3050 3237 2.394632 TCTAATGGCGGTACTGGTCAT 58.605 47.619 3.34 1.28 0.00 3.06
3051 3238 1.855295 TCTAATGGCGGTACTGGTCA 58.145 50.000 3.34 0.00 0.00 4.02
3055 3242 2.460918 CTCGTTCTAATGGCGGTACTG 58.539 52.381 0.00 0.00 0.00 2.74
3065 3252 2.766313 TGTGCACAAGCTCGTTCTAAT 58.234 42.857 19.28 0.00 42.74 1.73
3067 3254 2.135139 CTTGTGCACAAGCTCGTTCTA 58.865 47.619 38.56 12.92 45.59 2.10
3091 3278 3.015327 ACTCTTCGGTGTAGCGACTTAT 58.985 45.455 5.59 0.00 0.00 1.73
3092 3279 2.161012 CACTCTTCGGTGTAGCGACTTA 59.839 50.000 5.59 0.00 33.04 2.24
3106 3293 2.342179 GGCAGCAACTAGACACTCTTC 58.658 52.381 0.00 0.00 0.00 2.87
3108 3295 0.610687 GGGCAGCAACTAGACACTCT 59.389 55.000 0.00 0.00 0.00 3.24
3127 3315 3.362401 GCATTCTCGATAGCATGAACGTG 60.362 47.826 0.00 0.00 0.00 4.49
3130 3318 4.272018 ACTTGCATTCTCGATAGCATGAAC 59.728 41.667 15.89 0.00 36.80 3.18
3131 3319 4.445453 ACTTGCATTCTCGATAGCATGAA 58.555 39.130 15.89 3.91 36.80 2.57
3132 3320 4.053983 GACTTGCATTCTCGATAGCATGA 58.946 43.478 15.89 0.00 36.80 3.07
3134 3322 4.056740 CAGACTTGCATTCTCGATAGCAT 58.943 43.478 0.00 0.00 36.80 3.79
3135 3323 3.131046 TCAGACTTGCATTCTCGATAGCA 59.869 43.478 0.00 0.00 34.79 3.49
3136 3324 3.711086 TCAGACTTGCATTCTCGATAGC 58.289 45.455 0.00 0.00 0.00 2.97
3137 3325 6.841443 AAATCAGACTTGCATTCTCGATAG 57.159 37.500 0.00 0.00 0.00 2.08
3139 3327 5.525378 GGTAAATCAGACTTGCATTCTCGAT 59.475 40.000 0.00 0.00 0.00 3.59
3140 3328 4.870426 GGTAAATCAGACTTGCATTCTCGA 59.130 41.667 0.00 0.00 0.00 4.04
3141 3329 4.631377 TGGTAAATCAGACTTGCATTCTCG 59.369 41.667 0.00 0.00 0.00 4.04
3142 3330 6.500684 TTGGTAAATCAGACTTGCATTCTC 57.499 37.500 0.00 0.00 0.00 2.87
3181 3376 5.047872 GGCTAGAGATGCCCTTAGTTAGTAC 60.048 48.000 0.00 0.00 44.32 2.73
3184 3379 4.529109 GGCTAGAGATGCCCTTAGTTAG 57.471 50.000 0.00 0.00 44.32 2.34
3189 3384 6.841418 AGGAATCGGCTAGAGATGCCCTTA 62.841 50.000 17.43 0.00 43.47 2.69
3191 3386 4.767045 AGGAATCGGCTAGAGATGCCCT 62.767 54.545 17.43 14.82 43.47 5.19
3192 3387 2.443634 AGGAATCGGCTAGAGATGCCC 61.444 57.143 17.43 13.38 43.47 5.36
3193 3388 0.972883 AGGAATCGGCTAGAGATGCC 59.027 55.000 14.63 14.63 42.90 4.40
3194 3389 2.829741 AAGGAATCGGCTAGAGATGC 57.170 50.000 0.00 0.00 0.00 3.91
3195 3390 6.284459 ACTTTTAAGGAATCGGCTAGAGATG 58.716 40.000 0.00 0.00 0.00 2.90
3196 3391 6.487299 ACTTTTAAGGAATCGGCTAGAGAT 57.513 37.500 0.00 0.00 0.00 2.75
3197 3392 5.934402 ACTTTTAAGGAATCGGCTAGAGA 57.066 39.130 0.00 0.00 0.00 3.10
3198 3393 7.224949 CCTTAACTTTTAAGGAATCGGCTAGAG 59.775 40.741 16.67 0.00 45.24 2.43
3199 3394 7.046033 CCTTAACTTTTAAGGAATCGGCTAGA 58.954 38.462 16.67 0.00 45.24 2.43
3200 3395 6.260271 CCCTTAACTTTTAAGGAATCGGCTAG 59.740 42.308 21.45 3.00 45.24 3.42
3201 3396 6.070078 TCCCTTAACTTTTAAGGAATCGGCTA 60.070 38.462 21.45 0.21 45.24 3.93
3202 3397 4.948004 CCCTTAACTTTTAAGGAATCGGCT 59.052 41.667 21.45 0.00 45.24 5.52
3203 3398 4.945543 TCCCTTAACTTTTAAGGAATCGGC 59.054 41.667 21.45 0.00 45.24 5.54
3204 3399 6.178324 ACTCCCTTAACTTTTAAGGAATCGG 58.822 40.000 21.45 8.33 45.24 4.18
3205 3400 8.782339 TTACTCCCTTAACTTTTAAGGAATCG 57.218 34.615 21.45 8.62 45.24 3.34
3208 3403 9.135189 GGTTTTACTCCCTTAACTTTTAAGGAA 57.865 33.333 21.45 5.09 45.24 3.36
3209 3404 8.505246 AGGTTTTACTCCCTTAACTTTTAAGGA 58.495 33.333 21.45 10.01 45.24 3.36
3210 3405 8.701908 AGGTTTTACTCCCTTAACTTTTAAGG 57.298 34.615 15.22 15.22 42.78 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.