Multiple sequence alignment - TraesCS4D01G039100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G039100 chr4D 100.000 3248 0 0 1 3248 16796531 16799778 0.000000e+00 5999
1 TraesCS4D01G039100 chr4A 87.838 1110 78 26 828 1903 583759378 583758292 0.000000e+00 1249
2 TraesCS4D01G039100 chr4A 87.875 800 51 25 2472 3248 583757623 583756847 0.000000e+00 898
3 TraesCS4D01G039100 chr4A 89.976 419 34 4 2032 2442 583758121 583757703 4.770000e-148 534
4 TraesCS4D01G039100 chr4A 86.119 353 16 17 1 325 583760230 583759883 1.850000e-92 350
5 TraesCS4D01G039100 chr4B 86.375 778 49 23 399 1161 28714686 28715421 0.000000e+00 797
6 TraesCS4D01G039100 chr4B 88.433 683 40 23 2572 3248 28716809 28717458 0.000000e+00 787
7 TraesCS4D01G039100 chr4B 88.293 615 37 14 1305 1897 28715567 28716168 0.000000e+00 704
8 TraesCS4D01G039100 chr4B 92.411 448 30 3 2032 2475 28716345 28716792 1.270000e-178 636
9 TraesCS4D01G039100 chr4B 93.705 413 11 8 1 400 28714245 28714655 3.580000e-169 604
10 TraesCS4D01G039100 chr2A 98.020 101 2 0 3148 3248 12281434 12281334 3.330000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G039100 chr4D 16796531 16799778 3247 False 5999.00 5999 100.0000 1 3248 1 chr4D.!!$F1 3247
1 TraesCS4D01G039100 chr4A 583756847 583760230 3383 True 757.75 1249 87.9520 1 3248 4 chr4A.!!$R1 3247
2 TraesCS4D01G039100 chr4B 28714245 28717458 3213 False 705.60 797 89.8434 1 3248 5 chr4B.!!$F1 3247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 979 0.243907 GTAGGCTCAGCGACACTTCA 59.756 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 2849 0.253044 TCATCAGTAGCTGGTTGGGC 59.747 55.0 0.0 0.0 31.51 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 106 1.075536 AGAAACGGAATGGCTCCCTTT 59.924 47.619 0.00 0.00 41.87 3.11
155 162 2.284190 GCTGTATCTGCTTCCCTGTTC 58.716 52.381 0.00 0.00 0.00 3.18
407 504 9.137459 TCAAATGTACCCTTGTGAAAAATTCTA 57.863 29.630 0.00 0.00 0.00 2.10
412 509 9.757227 TGTACCCTTGTGAAAAATTCTAATTTG 57.243 29.630 1.61 0.00 38.53 2.32
422 519 9.171877 TGAAAAATTCTAATTTGTTTGGCAACT 57.828 25.926 0.00 0.00 38.53 3.16
507 607 4.024133 GGCGGAAAAACAAATTTGATGCTT 60.024 37.500 24.64 9.98 0.00 3.91
523 623 6.774354 TGATGCTTCAAAAAGATTTTCTGC 57.226 33.333 0.00 0.00 34.14 4.26
589 689 9.512435 CTCCAAGAATGTGATTTCATCATTAAC 57.488 33.333 7.75 0.00 42.04 2.01
627 729 9.852091 TGCAAAAGAATTAGCAATTTTTGTTTT 57.148 22.222 9.03 0.00 36.50 2.43
680 784 5.852282 ACTTTTTGGGATATTGGGATTCG 57.148 39.130 0.00 0.00 0.00 3.34
796 915 4.442753 GGCAAAACCCTTTCACAATTGAGA 60.443 41.667 13.59 7.01 31.71 3.27
822 941 3.399330 CCGAAACTCTGAGTGGCTTTTA 58.601 45.455 11.71 0.00 0.00 1.52
823 942 3.433615 CCGAAACTCTGAGTGGCTTTTAG 59.566 47.826 11.71 2.05 0.00 1.85
849 979 0.243907 GTAGGCTCAGCGACACTTCA 59.756 55.000 0.00 0.00 0.00 3.02
883 1013 0.978907 AAAATCAAGCCCAAGCCCAG 59.021 50.000 0.00 0.00 41.25 4.45
890 1020 4.403502 CCCAAGCCCAGGCCCAAT 62.404 66.667 4.70 0.00 43.17 3.16
891 1021 2.689175 CCAAGCCCAGGCCCAATA 59.311 61.111 4.70 0.00 43.17 1.90
956 1096 4.883759 TCTATCCTGGACAGAAGATTCCA 58.116 43.478 1.28 0.00 39.72 3.53
1008 1148 1.580845 GCACAGCAGAAATGGCGACT 61.581 55.000 0.00 0.00 36.08 4.18
1128 1271 2.286502 GCCCTCTTCCTCCCCCTT 60.287 66.667 0.00 0.00 0.00 3.95
1145 1288 2.124507 CTTCCCTCCCCTTTCGTGCA 62.125 60.000 0.00 0.00 0.00 4.57
1146 1289 2.359975 CCCTCCCCTTTCGTGCAC 60.360 66.667 6.82 6.82 0.00 4.57
1147 1290 2.742372 CCTCCCCTTTCGTGCACG 60.742 66.667 32.76 32.76 41.45 5.34
1176 1319 0.840288 TGGGAAGGAGCTAGTGCCAA 60.840 55.000 2.00 0.00 40.80 4.52
1179 1322 1.210478 GGAAGGAGCTAGTGCCAATCA 59.790 52.381 5.91 0.00 40.80 2.57
1183 1326 2.012673 GGAGCTAGTGCCAATCAAGTG 58.987 52.381 0.00 0.00 40.80 3.16
1188 1331 1.443194 GTGCCAATCAAGTGCGCTG 60.443 57.895 9.73 0.00 32.93 5.18
1228 1371 0.510359 CTTGCGTTGTCTGTCTCTGC 59.490 55.000 0.00 0.00 0.00 4.26
1231 1374 1.880601 GCGTTGTCTGTCTCTGCGTG 61.881 60.000 0.00 0.00 0.00 5.34
1236 1381 1.679153 TGTCTGTCTCTGCGTGTGTAA 59.321 47.619 0.00 0.00 0.00 2.41
1239 1384 3.741344 GTCTGTCTCTGCGTGTGTAATTT 59.259 43.478 0.00 0.00 0.00 1.82
1242 1387 4.123506 TGTCTCTGCGTGTGTAATTTCAA 58.876 39.130 0.00 0.00 0.00 2.69
1243 1388 4.572795 TGTCTCTGCGTGTGTAATTTCAAA 59.427 37.500 0.00 0.00 0.00 2.69
1274 1419 0.259938 GGATGCTGGAAGAATGGGGT 59.740 55.000 0.00 0.00 26.21 4.95
1278 1424 0.329596 GCTGGAAGAATGGGGTGAGT 59.670 55.000 0.00 0.00 34.07 3.41
1284 1430 0.251341 AGAATGGGGTGAGTTGGTGC 60.251 55.000 0.00 0.00 0.00 5.01
1287 1433 2.034221 GGGGTGAGTTGGTGCCTC 59.966 66.667 0.00 0.00 0.00 4.70
1295 1441 2.703536 TGAGTTGGTGCCTCTTTCTGTA 59.296 45.455 0.00 0.00 0.00 2.74
1301 1480 4.469657 TGGTGCCTCTTTCTGTAAATGTT 58.530 39.130 0.00 0.00 0.00 2.71
1303 1482 4.518970 GGTGCCTCTTTCTGTAAATGTTCA 59.481 41.667 0.00 0.00 0.00 3.18
1329 1508 5.973565 GCACATTTTGCCTGATAATGTAGTC 59.026 40.000 0.00 0.00 46.63 2.59
1343 1523 8.236586 TGATAATGTAGTCATTTCTTTGCACAC 58.763 33.333 0.00 0.00 43.12 3.82
1348 1528 4.874970 AGTCATTTCTTTGCACACCAATC 58.125 39.130 0.00 0.00 32.49 2.67
1373 1554 8.336235 TCTGAATGTTATAGGGATGGTTCTTTT 58.664 33.333 0.00 0.00 0.00 2.27
1402 1583 7.569599 TTTTCCTCCCTATATATGTCCCTTC 57.430 40.000 0.00 0.00 0.00 3.46
1404 1585 5.590818 TCCTCCCTATATATGTCCCTTCAC 58.409 45.833 0.00 0.00 0.00 3.18
1416 1597 5.042463 TGTCCCTTCACATGTCTTTACAA 57.958 39.130 0.00 0.00 39.58 2.41
1420 1601 6.431234 GTCCCTTCACATGTCTTTACAAAGAT 59.569 38.462 7.62 0.00 45.83 2.40
1423 1604 7.301054 CCTTCACATGTCTTTACAAAGATGAC 58.699 38.462 7.62 0.00 45.83 3.06
1457 1642 5.801531 AGATGTGTGTAGGTGACTGTTTA 57.198 39.130 0.00 0.00 43.88 2.01
1561 1749 2.418197 CCGTATCGGTGGTGTTGAGATT 60.418 50.000 0.00 0.00 42.73 2.40
1574 1762 3.068024 TGTTGAGATTCCAAACCACAAGC 59.932 43.478 0.00 0.00 0.00 4.01
1696 1884 0.684479 CCGAGGAGGAGGTCATCACA 60.684 60.000 0.00 0.00 45.00 3.58
1769 1972 5.869579 TCTGACCCCTTTGCTAATATGATC 58.130 41.667 0.00 0.00 0.00 2.92
1798 2001 7.825681 TCCATTCCATGTTGTTACAATAACAG 58.174 34.615 0.00 3.51 42.05 3.16
1845 2048 4.299485 AGGCTTAGCTAGGACCTGTTTAT 58.701 43.478 14.95 0.00 0.00 1.40
1846 2049 4.722279 AGGCTTAGCTAGGACCTGTTTATT 59.278 41.667 14.95 0.00 0.00 1.40
1847 2050 5.191921 AGGCTTAGCTAGGACCTGTTTATTT 59.808 40.000 14.95 0.00 0.00 1.40
1848 2051 6.386050 AGGCTTAGCTAGGACCTGTTTATTTA 59.614 38.462 14.95 0.00 0.00 1.40
1849 2052 6.482641 GGCTTAGCTAGGACCTGTTTATTTAC 59.517 42.308 7.11 0.00 0.00 2.01
1850 2053 7.273712 GCTTAGCTAGGACCTGTTTATTTACT 58.726 38.462 7.11 0.00 0.00 2.24
1851 2054 7.769507 GCTTAGCTAGGACCTGTTTATTTACTT 59.230 37.037 7.11 0.00 0.00 2.24
1876 2079 7.839680 AGTTCTTCCCACATGTCTTTAAAAT 57.160 32.000 0.00 0.00 0.00 1.82
1879 2082 8.573035 GTTCTTCCCACATGTCTTTAAAATACA 58.427 33.333 0.00 5.72 0.00 2.29
1880 2083 8.106247 TCTTCCCACATGTCTTTAAAATACAC 57.894 34.615 0.00 0.00 0.00 2.90
1900 2103 5.553123 ACACCATTTCACTGTTATAACGGA 58.447 37.500 27.43 14.19 38.65 4.69
1903 2106 7.175990 ACACCATTTCACTGTTATAACGGAAAT 59.824 33.333 27.43 24.90 38.65 2.17
1904 2107 8.026607 CACCATTTCACTGTTATAACGGAAATT 58.973 33.333 27.43 15.60 38.65 1.82
1923 2192 9.180678 CGGAAATTATTAATTCCATGCTGTTAC 57.819 33.333 2.22 0.00 0.00 2.50
1936 2205 4.090138 TGCTGTTACAATAACAATGCCG 57.910 40.909 9.26 0.00 0.00 5.69
1940 2209 5.676079 GCTGTTACAATAACAATGCCGTCAT 60.676 40.000 3.23 0.00 33.53 3.06
1942 2211 3.781079 ACAATAACAATGCCGTCATGG 57.219 42.857 0.00 0.00 42.50 3.66
1966 2252 8.391699 TGGTATTCTATTAGAGGCTTAGCTAGA 58.608 37.037 3.59 0.00 0.00 2.43
1975 2261 5.181748 AGAGGCTTAGCTAGAACATGTTTG 58.818 41.667 13.36 7.58 0.00 2.93
1986 2272 4.489679 GAACATGTTTGGTTCTCTCCAC 57.510 45.455 13.36 0.00 41.05 4.02
1987 2273 3.576078 ACATGTTTGGTTCTCTCCACA 57.424 42.857 0.00 0.00 37.20 4.17
1992 2278 2.526304 TTGGTTCTCTCCACAGTTCG 57.474 50.000 0.00 0.00 37.20 3.95
1994 2280 2.589720 TGGTTCTCTCCACAGTTCGTA 58.410 47.619 0.00 0.00 31.96 3.43
1996 2282 3.243636 TGGTTCTCTCCACAGTTCGTAAC 60.244 47.826 0.00 0.00 31.96 2.50
1997 2283 3.315418 GTTCTCTCCACAGTTCGTAACC 58.685 50.000 0.00 0.00 0.00 2.85
1998 2284 2.589720 TCTCTCCACAGTTCGTAACCA 58.410 47.619 0.00 0.00 0.00 3.67
1999 2285 3.162666 TCTCTCCACAGTTCGTAACCAT 58.837 45.455 0.00 0.00 0.00 3.55
2000 2286 4.338012 TCTCTCCACAGTTCGTAACCATA 58.662 43.478 0.00 0.00 0.00 2.74
2001 2287 4.954202 TCTCTCCACAGTTCGTAACCATAT 59.046 41.667 0.00 0.00 0.00 1.78
2002 2288 5.421056 TCTCTCCACAGTTCGTAACCATATT 59.579 40.000 0.00 0.00 0.00 1.28
2003 2289 6.045072 TCTCCACAGTTCGTAACCATATTT 57.955 37.500 0.00 0.00 0.00 1.40
2004 2290 5.872617 TCTCCACAGTTCGTAACCATATTTG 59.127 40.000 0.00 0.00 0.00 2.32
2005 2291 5.553123 TCCACAGTTCGTAACCATATTTGT 58.447 37.500 0.00 0.00 0.00 2.83
2006 2292 5.640357 TCCACAGTTCGTAACCATATTTGTC 59.360 40.000 0.00 0.00 0.00 3.18
2007 2293 5.445407 CCACAGTTCGTAACCATATTTGTCG 60.445 44.000 0.00 0.00 0.00 4.35
2008 2294 5.119588 CACAGTTCGTAACCATATTTGTCGT 59.880 40.000 0.00 0.00 0.00 4.34
2009 2295 5.697633 ACAGTTCGTAACCATATTTGTCGTT 59.302 36.000 0.00 0.00 0.00 3.85
2010 2296 6.203338 ACAGTTCGTAACCATATTTGTCGTTT 59.797 34.615 0.00 0.00 0.00 3.60
2011 2297 7.073265 CAGTTCGTAACCATATTTGTCGTTTT 58.927 34.615 0.00 0.00 0.00 2.43
2012 2298 8.222433 CAGTTCGTAACCATATTTGTCGTTTTA 58.778 33.333 0.00 0.00 0.00 1.52
2013 2299 8.223100 AGTTCGTAACCATATTTGTCGTTTTAC 58.777 33.333 0.00 0.00 0.00 2.01
2014 2300 7.887996 TCGTAACCATATTTGTCGTTTTACT 57.112 32.000 0.00 0.00 0.00 2.24
2015 2301 8.978564 TCGTAACCATATTTGTCGTTTTACTA 57.021 30.769 0.00 0.00 0.00 1.82
2016 2302 9.585099 TCGTAACCATATTTGTCGTTTTACTAT 57.415 29.630 0.00 0.00 0.00 2.12
2049 2335 7.231317 TGGTAGCATCTTCAAAAAGAACTGAAT 59.769 33.333 0.00 0.00 44.49 2.57
2051 2337 9.766277 GTAGCATCTTCAAAAAGAACTGAATAG 57.234 33.333 0.00 0.00 44.49 1.73
2054 2340 9.468532 GCATCTTCAAAAAGAACTGAATAGTTT 57.531 29.630 0.00 0.00 46.79 2.66
2057 2343 9.408648 TCTTCAAAAAGAACTGAATAGTTTCCT 57.591 29.630 0.00 0.00 46.79 3.36
2290 2578 2.093711 ACCTCCTGTTTGGTTTTTGTGC 60.094 45.455 0.00 0.00 37.07 4.57
2291 2579 2.093764 CCTCCTGTTTGGTTTTTGTGCA 60.094 45.455 0.00 0.00 37.07 4.57
2308 2596 0.597637 GCACTACATCACGGCGCTAT 60.598 55.000 6.90 0.00 0.00 2.97
2325 2613 2.364324 GCTATCACCATTCGGTACTCCA 59.636 50.000 0.00 0.00 46.94 3.86
2342 2630 4.154942 ACTCCATTTCAAGTTTCCATGCT 58.845 39.130 0.00 0.00 0.00 3.79
2362 2655 3.678806 GCTGTCGTAGATGAATTGTGGGA 60.679 47.826 0.00 0.00 40.67 4.37
2383 2676 2.976692 TATGGTCGGATGCTGCTGCG 62.977 60.000 11.21 3.97 43.34 5.18
2395 2688 4.118093 TGCTGCTGCGAAGTTTATAGTA 57.882 40.909 11.21 0.00 43.34 1.82
2399 2692 5.006746 GCTGCTGCGAAGTTTATAGTAATGT 59.993 40.000 0.00 0.00 0.00 2.71
2464 2788 4.424430 CGCGTTTCGTCCCAAGCG 62.424 66.667 0.00 0.00 41.56 4.68
2466 2790 4.424430 CGTTTCGTCCCAAGCGCG 62.424 66.667 0.00 0.00 0.00 6.86
2485 2828 2.160285 GCGAATGTTTTCTTTTGTCGCG 60.160 45.455 0.00 0.00 34.54 5.87
2486 2829 2.400408 CGAATGTTTTCTTTTGTCGCGG 59.600 45.455 6.13 0.00 0.00 6.46
2487 2830 1.766069 ATGTTTTCTTTTGTCGCGGC 58.234 45.000 2.29 2.29 0.00 6.53
2508 2851 4.465413 GCTTGATGCAAAGACGCC 57.535 55.556 2.23 0.00 42.31 5.68
2514 2858 1.523154 GATGCAAAGACGCCCAACCA 61.523 55.000 0.00 0.00 0.00 3.67
2520 2864 1.481056 AAGACGCCCAACCAGCTACT 61.481 55.000 0.00 0.00 0.00 2.57
2539 2883 5.221541 GCTACTGATGACTGGGTTAGCTTAT 60.222 44.000 0.00 0.00 0.00 1.73
2540 2884 5.700402 ACTGATGACTGGGTTAGCTTATT 57.300 39.130 0.00 0.00 0.00 1.40
2541 2885 6.067217 ACTGATGACTGGGTTAGCTTATTT 57.933 37.500 0.00 0.00 0.00 1.40
2542 2886 5.882557 ACTGATGACTGGGTTAGCTTATTTG 59.117 40.000 0.00 0.00 0.00 2.32
2543 2887 6.061022 TGATGACTGGGTTAGCTTATTTGA 57.939 37.500 0.00 0.00 0.00 2.69
2546 2890 5.001232 TGACTGGGTTAGCTTATTTGACAC 58.999 41.667 0.00 0.00 0.00 3.67
2547 2891 4.332828 ACTGGGTTAGCTTATTTGACACC 58.667 43.478 0.00 0.00 0.00 4.16
2551 2895 3.126343 GGTTAGCTTATTTGACACCGGTG 59.874 47.826 32.83 32.83 0.00 4.94
2552 2896 1.165270 AGCTTATTTGACACCGGTGC 58.835 50.000 34.26 25.37 0.00 5.01
2554 2898 1.539827 GCTTATTTGACACCGGTGCTT 59.460 47.619 34.26 16.70 0.00 3.91
2555 2899 2.414161 GCTTATTTGACACCGGTGCTTC 60.414 50.000 34.26 24.51 0.00 3.86
2556 2900 1.434555 TATTTGACACCGGTGCTTCG 58.565 50.000 34.26 11.24 0.00 3.79
2558 2902 1.155424 TTTGACACCGGTGCTTCGAC 61.155 55.000 34.26 17.73 0.00 4.20
2559 2903 2.028484 GACACCGGTGCTTCGACA 59.972 61.111 34.26 0.00 0.00 4.35
2560 2904 1.593209 GACACCGGTGCTTCGACAA 60.593 57.895 34.26 0.00 0.00 3.18
2561 2905 1.153329 ACACCGGTGCTTCGACAAA 60.153 52.632 34.26 0.00 0.00 2.83
2567 2911 1.265635 CGGTGCTTCGACAAATTTCCA 59.734 47.619 0.00 0.00 0.00 3.53
2627 2971 1.471327 GCAAGCTAGACAGAGGAGCTG 60.471 57.143 0.00 0.00 45.74 4.24
2634 2978 3.385469 CAGAGGAGCTGCAGTGGA 58.615 61.111 16.64 0.00 37.90 4.02
2641 2985 2.047844 GCTGCAGTGGAAGCTCGA 60.048 61.111 16.64 0.00 42.94 4.04
2646 2990 2.799412 CTGCAGTGGAAGCTCGATAATC 59.201 50.000 5.25 0.00 0.00 1.75
2673 3019 5.009010 ACTGTCAGGTTTGATTGCTAGTTTG 59.991 40.000 4.53 0.00 35.39 2.93
2678 3024 4.459337 AGGTTTGATTGCTAGTTTGCTACC 59.541 41.667 0.00 0.00 0.00 3.18
2679 3025 4.217550 GGTTTGATTGCTAGTTTGCTACCA 59.782 41.667 0.00 0.00 0.00 3.25
2680 3026 5.393962 GTTTGATTGCTAGTTTGCTACCAG 58.606 41.667 0.00 0.00 0.00 4.00
2682 3028 5.102953 TGATTGCTAGTTTGCTACCAGAT 57.897 39.130 0.00 0.00 0.00 2.90
2683 3029 6.233905 TGATTGCTAGTTTGCTACCAGATA 57.766 37.500 0.00 0.00 0.00 1.98
2684 3030 6.283694 TGATTGCTAGTTTGCTACCAGATAG 58.716 40.000 0.00 0.00 0.00 2.08
2685 3031 5.677319 TTGCTAGTTTGCTACCAGATAGT 57.323 39.130 0.00 0.00 32.90 2.12
2687 3033 6.145338 TGCTAGTTTGCTACCAGATAGTAC 57.855 41.667 0.00 0.00 32.90 2.73
2689 3035 6.153851 TGCTAGTTTGCTACCAGATAGTACAA 59.846 38.462 0.00 0.00 32.90 2.41
2691 3037 7.711339 GCTAGTTTGCTACCAGATAGTACAAAT 59.289 37.037 0.00 0.00 31.85 2.32
2692 3038 9.601217 CTAGTTTGCTACCAGATAGTACAAATT 57.399 33.333 0.00 0.00 31.85 1.82
2694 3040 9.379791 AGTTTGCTACCAGATAGTACAAATTAC 57.620 33.333 0.00 0.00 31.85 1.89
2695 3041 9.158233 GTTTGCTACCAGATAGTACAAATTACA 57.842 33.333 0.00 0.00 31.85 2.41
2696 3042 8.942338 TTGCTACCAGATAGTACAAATTACAG 57.058 34.615 0.00 0.00 32.90 2.74
2697 3043 8.074613 TGCTACCAGATAGTACAAATTACAGT 57.925 34.615 0.00 0.00 32.90 3.55
2700 3046 9.737427 CTACCAGATAGTACAAATTACAGTCAG 57.263 37.037 0.00 0.00 0.00 3.51
2727 3078 1.727880 CATGCAAAAATCCAAGGCACG 59.272 47.619 0.00 0.00 37.30 5.34
2761 3112 3.266477 TTTGGGATGAATTTGGGGTCA 57.734 42.857 0.00 0.00 0.00 4.02
2762 3113 2.230130 TGGGATGAATTTGGGGTCAC 57.770 50.000 0.00 0.00 0.00 3.67
2763 3114 1.272985 TGGGATGAATTTGGGGTCACC 60.273 52.381 0.00 0.00 40.81 4.02
2764 3115 1.007118 GGGATGAATTTGGGGTCACCT 59.993 52.381 0.00 0.00 41.11 4.00
2766 3117 3.309556 GGGATGAATTTGGGGTCACCTAA 60.310 47.826 0.00 0.00 41.11 2.69
2796 3148 5.929697 TTTGTGCAAGTTCAGACATCTAG 57.070 39.130 0.00 0.00 0.00 2.43
2797 3149 4.607293 TGTGCAAGTTCAGACATCTAGT 57.393 40.909 0.00 0.00 0.00 2.57
2798 3150 5.722021 TGTGCAAGTTCAGACATCTAGTA 57.278 39.130 0.00 0.00 0.00 1.82
2827 3179 3.961477 TTTGACCGACAATGTGAGTTG 57.039 42.857 0.00 0.00 38.36 3.16
2926 3296 3.446873 TGCAACAGTCACACAAAAATCCT 59.553 39.130 0.00 0.00 0.00 3.24
2937 3308 2.043115 ACAAAAATCCTTCCCTCCCTCC 59.957 50.000 0.00 0.00 0.00 4.30
3015 3386 2.646175 CCGCCTCCTCGTCTTCCAA 61.646 63.158 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 7.415206 GCCATTCCGTTTCTTACATCTTTACAT 60.415 37.037 0.00 0.00 0.00 2.29
101 106 8.389603 CCTTTTTATTGCGTAATACCGACTTTA 58.610 33.333 5.37 0.00 0.00 1.85
155 162 2.979813 GCAACGGTAACTGCAATTTCAG 59.020 45.455 3.36 3.36 37.67 3.02
375 440 3.438087 CACAAGGGTACATTTGAGCTCTG 59.562 47.826 16.19 7.62 0.00 3.35
376 441 3.327757 TCACAAGGGTACATTTGAGCTCT 59.672 43.478 16.19 0.00 0.00 4.09
407 504 7.335422 TCAACAATGTTAGTTGCCAAACAAATT 59.665 29.630 0.00 0.00 44.50 1.82
412 509 6.843069 ATTCAACAATGTTAGTTGCCAAAC 57.157 33.333 0.00 0.00 44.50 2.93
480 577 5.263968 TCAAATTTGTTTTTCCGCCTACA 57.736 34.783 17.47 0.00 0.00 2.74
481 578 5.389411 GCATCAAATTTGTTTTTCCGCCTAC 60.389 40.000 17.47 0.00 0.00 3.18
483 580 3.498018 GCATCAAATTTGTTTTTCCGCCT 59.502 39.130 17.47 0.00 0.00 5.52
484 581 3.498018 AGCATCAAATTTGTTTTTCCGCC 59.502 39.130 17.47 0.00 0.00 6.13
486 583 6.284475 TGAAGCATCAAATTTGTTTTTCCG 57.716 33.333 17.47 0.00 30.99 4.30
507 607 7.556733 AAATGCTTGCAGAAAATCTTTTTGA 57.443 28.000 0.87 0.00 0.00 2.69
536 636 5.411053 CCGGGCAAAAATAACAAATCAACAT 59.589 36.000 0.00 0.00 0.00 2.71
654 757 9.073475 CGAATCCCAATATCCCAAAAAGTAATA 57.927 33.333 0.00 0.00 0.00 0.98
659 762 5.852282 ACGAATCCCAATATCCCAAAAAG 57.148 39.130 0.00 0.00 0.00 2.27
665 768 3.260884 TCTGCTACGAATCCCAATATCCC 59.739 47.826 0.00 0.00 0.00 3.85
670 774 2.092968 TGCTTCTGCTACGAATCCCAAT 60.093 45.455 0.00 0.00 40.48 3.16
673 777 2.246719 ATGCTTCTGCTACGAATCCC 57.753 50.000 0.00 0.00 40.48 3.85
675 779 4.784710 GCTCAAATGCTTCTGCTACGAATC 60.785 45.833 0.00 0.00 40.48 2.52
676 780 3.064545 GCTCAAATGCTTCTGCTACGAAT 59.935 43.478 0.00 0.00 40.48 3.34
781 900 2.160417 GGCTCGTCTCAATTGTGAAAGG 59.840 50.000 11.57 5.25 31.88 3.11
783 902 1.798223 CGGCTCGTCTCAATTGTGAAA 59.202 47.619 11.57 3.31 31.88 2.69
796 915 0.039074 CACTCAGAGTTTCGGCTCGT 60.039 55.000 0.00 0.00 40.26 4.18
883 1013 2.203209 CTGCTCCGGTATTGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
890 1020 2.759973 CTGGAGGCTGCTCCGGTA 60.760 66.667 7.74 0.00 46.18 4.02
956 1096 3.276846 GCGCGTGTGTTTCCCACT 61.277 61.111 8.43 0.00 44.81 4.00
987 1127 1.154093 CGCCATTTCTGCTGTGCTG 60.154 57.895 0.00 0.00 0.00 4.41
991 1131 0.322975 AGAGTCGCCATTTCTGCTGT 59.677 50.000 0.00 0.00 0.00 4.40
1008 1148 1.758514 GCCGGAGACCATGGAGAGA 60.759 63.158 21.47 0.00 0.00 3.10
1128 1271 2.528127 TGCACGAAAGGGGAGGGA 60.528 61.111 0.00 0.00 32.68 4.20
1145 1288 2.524887 TTCCCAAGGGGTCGTCGT 60.525 61.111 5.08 0.00 44.74 4.34
1146 1289 2.264794 CTTCCCAAGGGGTCGTCG 59.735 66.667 5.08 0.00 44.74 5.12
1147 1290 2.669240 CCTTCCCAAGGGGTCGTC 59.331 66.667 5.08 0.00 45.27 4.20
1176 1319 0.460987 GACCTAGCAGCGCACTTGAT 60.461 55.000 11.47 0.00 0.00 2.57
1179 1322 1.216710 GAGACCTAGCAGCGCACTT 59.783 57.895 11.47 0.00 0.00 3.16
1188 1331 2.202623 CGTGTGCCGAGACCTAGC 60.203 66.667 0.00 0.00 39.56 3.42
1228 1371 6.417635 GGGCATATCATTTGAAATTACACACG 59.582 38.462 0.00 0.00 0.00 4.49
1231 1374 5.920273 CCGGGCATATCATTTGAAATTACAC 59.080 40.000 0.00 0.00 0.00 2.90
1236 1381 3.843422 TCCCGGGCATATCATTTGAAAT 58.157 40.909 18.49 0.00 0.00 2.17
1239 1384 2.794103 CATCCCGGGCATATCATTTGA 58.206 47.619 18.49 0.00 0.00 2.69
1242 1387 0.700564 AGCATCCCGGGCATATCATT 59.299 50.000 18.49 0.00 0.00 2.57
1243 1388 0.034767 CAGCATCCCGGGCATATCAT 60.035 55.000 18.49 0.00 0.00 2.45
1274 1419 1.490490 ACAGAAAGAGGCACCAACTCA 59.510 47.619 0.00 0.00 37.43 3.41
1278 1424 4.469657 ACATTTACAGAAAGAGGCACCAA 58.530 39.130 0.00 0.00 0.00 3.67
1284 1430 6.145535 GTGCTTGAACATTTACAGAAAGAGG 58.854 40.000 0.00 0.00 0.00 3.69
1287 1433 7.935338 AATGTGCTTGAACATTTACAGAAAG 57.065 32.000 1.31 0.00 46.19 2.62
1329 1508 4.873817 TCAGATTGGTGTGCAAAGAAATG 58.126 39.130 0.00 0.00 0.00 2.32
1343 1523 6.546484 ACCATCCCTATAACATTCAGATTGG 58.454 40.000 0.00 0.00 0.00 3.16
1348 1528 8.525290 AAAAGAACCATCCCTATAACATTCAG 57.475 34.615 0.00 0.00 0.00 3.02
1383 1564 6.441924 ACATGTGAAGGGACATATATAGGGAG 59.558 42.308 0.00 0.00 34.69 4.30
1386 1567 7.487822 AGACATGTGAAGGGACATATATAGG 57.512 40.000 1.15 0.00 34.69 2.57
1402 1583 6.808008 AGGTCATCTTTGTAAAGACATGTG 57.192 37.500 1.15 4.67 46.80 3.21
1404 1585 7.874940 TGAAAGGTCATCTTTGTAAAGACATG 58.125 34.615 9.07 5.61 46.80 3.21
1416 1597 8.489489 ACACATCTACATATGAAAGGTCATCTT 58.511 33.333 10.38 0.00 43.69 2.40
1420 1601 6.946340 ACACACATCTACATATGAAAGGTCA 58.054 36.000 10.38 0.00 38.41 4.02
1423 1604 7.439356 CACCTACACACATCTACATATGAAAGG 59.561 40.741 10.38 0.00 0.00 3.11
1457 1642 9.617523 AAAACAGAAGAATCAATCAAAACCATT 57.382 25.926 0.00 0.00 0.00 3.16
1561 1749 1.826054 CACCCGCTTGTGGTTTGGA 60.826 57.895 0.00 0.00 32.46 3.53
1574 1762 2.490217 CAGCGAGTACTCCACCCG 59.510 66.667 17.23 6.92 0.00 5.28
1798 2001 1.502231 AGAATGTATCATGACGGCGC 58.498 50.000 6.90 0.00 0.00 6.53
1845 2048 7.074653 AGACATGTGGGAAGAACTAAGTAAA 57.925 36.000 1.15 0.00 0.00 2.01
1846 2049 6.681729 AGACATGTGGGAAGAACTAAGTAA 57.318 37.500 1.15 0.00 0.00 2.24
1847 2050 6.681729 AAGACATGTGGGAAGAACTAAGTA 57.318 37.500 1.15 0.00 0.00 2.24
1848 2051 5.568620 AAGACATGTGGGAAGAACTAAGT 57.431 39.130 1.15 0.00 0.00 2.24
1849 2052 7.979444 TTAAAGACATGTGGGAAGAACTAAG 57.021 36.000 1.15 0.00 0.00 2.18
1850 2053 8.754991 TTTTAAAGACATGTGGGAAGAACTAA 57.245 30.769 1.15 0.00 0.00 2.24
1851 2054 8.934023 ATTTTAAAGACATGTGGGAAGAACTA 57.066 30.769 1.15 0.00 0.00 2.24
1852 2055 7.839680 ATTTTAAAGACATGTGGGAAGAACT 57.160 32.000 1.15 0.00 0.00 3.01
1866 2069 9.744468 AACAGTGAAATGGTGTATTTTAAAGAC 57.256 29.630 0.00 0.00 39.06 3.01
1876 2079 6.699366 TCCGTTATAACAGTGAAATGGTGTA 58.301 36.000 15.67 0.00 31.28 2.90
1879 2082 7.696992 ATTTCCGTTATAACAGTGAAATGGT 57.303 32.000 23.36 10.97 32.78 3.55
1897 2100 9.180678 GTAACAGCATGGAATTAATAATTTCCG 57.819 33.333 1.85 0.00 43.62 4.30
1908 2177 7.278424 GCATTGTTATTGTAACAGCATGGAATT 59.722 33.333 12.69 0.00 43.62 2.17
1911 2180 5.394005 GGCATTGTTATTGTAACAGCATGGA 60.394 40.000 12.88 0.00 43.62 3.41
1917 2186 5.289917 TGACGGCATTGTTATTGTAACAG 57.710 39.130 0.00 0.00 0.00 3.16
1923 2192 3.781079 ACCATGACGGCATTGTTATTG 57.219 42.857 0.00 0.00 39.03 1.90
1924 2193 5.827797 AGAATACCATGACGGCATTGTTATT 59.172 36.000 13.91 10.43 39.03 1.40
1930 2199 7.004555 TCTAATAGAATACCATGACGGCATT 57.995 36.000 0.00 0.00 39.03 3.56
1936 2205 7.762159 GCTAAGCCTCTAATAGAATACCATGAC 59.238 40.741 0.00 0.00 0.00 3.06
1940 2209 8.391699 TCTAGCTAAGCCTCTAATAGAATACCA 58.608 37.037 0.00 0.00 0.00 3.25
1966 2252 3.885297 CTGTGGAGAGAACCAAACATGTT 59.115 43.478 4.92 4.92 41.87 2.71
1975 2261 3.315418 GTTACGAACTGTGGAGAGAACC 58.685 50.000 0.00 0.00 0.00 3.62
1986 2272 5.773239 ACGACAAATATGGTTACGAACTG 57.227 39.130 0.00 0.00 0.00 3.16
1987 2273 6.790285 AAACGACAAATATGGTTACGAACT 57.210 33.333 0.00 0.00 0.00 3.01
2018 2304 9.860898 GTTCTTTTTGAAGATGCTACCAAATAT 57.139 29.630 0.00 0.00 35.01 1.28
2019 2305 9.077885 AGTTCTTTTTGAAGATGCTACCAAATA 57.922 29.630 0.00 0.00 35.01 1.40
2020 2306 7.869429 CAGTTCTTTTTGAAGATGCTACCAAAT 59.131 33.333 0.00 0.00 35.01 2.32
2021 2307 7.068103 TCAGTTCTTTTTGAAGATGCTACCAAA 59.932 33.333 0.00 0.00 35.01 3.28
2022 2308 6.545666 TCAGTTCTTTTTGAAGATGCTACCAA 59.454 34.615 0.00 0.00 35.01 3.67
2023 2309 6.061441 TCAGTTCTTTTTGAAGATGCTACCA 58.939 36.000 0.00 0.00 35.01 3.25
2024 2310 6.560253 TCAGTTCTTTTTGAAGATGCTACC 57.440 37.500 0.00 0.00 35.01 3.18
2025 2311 9.766277 CTATTCAGTTCTTTTTGAAGATGCTAC 57.234 33.333 0.00 0.00 36.81 3.58
2026 2312 9.507329 ACTATTCAGTTCTTTTTGAAGATGCTA 57.493 29.630 0.00 0.00 36.81 3.49
2027 2313 8.401490 ACTATTCAGTTCTTTTTGAAGATGCT 57.599 30.769 0.00 0.00 36.81 3.79
2028 2314 9.468532 AAACTATTCAGTTCTTTTTGAAGATGC 57.531 29.630 0.00 0.00 44.41 3.91
2031 2317 9.408648 AGGAAACTATTCAGTTCTTTTTGAAGA 57.591 29.630 0.00 0.00 44.41 2.87
2032 2318 9.670719 GAGGAAACTATTCAGTTCTTTTTGAAG 57.329 33.333 0.00 0.00 44.41 3.02
2033 2319 9.184523 TGAGGAAACTATTCAGTTCTTTTTGAA 57.815 29.630 0.00 0.00 44.41 2.69
2034 2320 8.746052 TGAGGAAACTATTCAGTTCTTTTTGA 57.254 30.769 0.00 0.00 44.41 2.69
2035 2321 9.971922 ATTGAGGAAACTATTCAGTTCTTTTTG 57.028 29.630 0.00 0.00 44.41 2.44
2040 2326 6.479884 AGCATTGAGGAAACTATTCAGTTCT 58.520 36.000 0.00 0.00 44.41 3.01
2049 2335 7.307751 CGTTTCTGTAAAGCATTGAGGAAACTA 60.308 37.037 17.26 0.00 44.43 2.24
2051 2337 5.625311 CGTTTCTGTAAAGCATTGAGGAAAC 59.375 40.000 13.18 13.18 0.00 2.78
2053 2339 4.215399 CCGTTTCTGTAAAGCATTGAGGAA 59.785 41.667 0.00 0.00 0.00 3.36
2054 2340 3.751175 CCGTTTCTGTAAAGCATTGAGGA 59.249 43.478 0.00 0.00 0.00 3.71
2057 2343 4.576873 TGAACCGTTTCTGTAAAGCATTGA 59.423 37.500 0.00 0.00 32.36 2.57
2088 2376 2.364970 CTCCTTCATCCTCTCAATCGCT 59.635 50.000 0.00 0.00 0.00 4.93
2208 2496 1.014564 CCGACTTCTTCTTGGCGACC 61.015 60.000 0.00 0.00 0.00 4.79
2290 2578 1.269051 TGATAGCGCCGTGATGTAGTG 60.269 52.381 2.29 0.00 0.00 2.74
2291 2579 1.029681 TGATAGCGCCGTGATGTAGT 58.970 50.000 2.29 0.00 0.00 2.73
2325 2613 3.569701 ACGACAGCATGGAAACTTGAAAT 59.430 39.130 0.00 0.00 43.62 2.17
2342 2630 4.545208 TTCCCACAATTCATCTACGACA 57.455 40.909 0.00 0.00 0.00 4.35
2362 2655 1.888215 CAGCAGCATCCGACCATATT 58.112 50.000 0.00 0.00 0.00 1.28
2395 2688 8.209584 AGTGCATATAACAGAAGAGATGACATT 58.790 33.333 0.00 0.00 0.00 2.71
2399 2692 7.352079 TCAGTGCATATAACAGAAGAGATGA 57.648 36.000 0.00 0.00 0.00 2.92
2444 2768 2.887889 CTTGGGACGAAACGCGCAA 61.888 57.895 5.73 0.00 46.04 4.85
2464 2788 2.160285 CGCGACAAAAGAAAACATTCGC 60.160 45.455 0.00 3.09 45.20 4.70
2466 2790 2.153057 GCCGCGACAAAAGAAAACATTC 59.847 45.455 8.23 0.00 0.00 2.67
2506 2849 0.253044 TCATCAGTAGCTGGTTGGGC 59.747 55.000 0.00 0.00 31.51 5.36
2507 2850 1.556911 AGTCATCAGTAGCTGGTTGGG 59.443 52.381 0.00 0.00 31.51 4.12
2508 2851 2.625737 CAGTCATCAGTAGCTGGTTGG 58.374 52.381 0.00 0.00 31.51 3.77
2514 2858 2.432510 GCTAACCCAGTCATCAGTAGCT 59.567 50.000 0.00 0.00 0.00 3.32
2520 2864 5.880332 GTCAAATAAGCTAACCCAGTCATCA 59.120 40.000 0.00 0.00 0.00 3.07
2530 2874 3.425758 GCACCGGTGTCAAATAAGCTAAC 60.426 47.826 33.92 9.75 0.00 2.34
2539 2883 1.144276 TCGAAGCACCGGTGTCAAA 59.856 52.632 33.92 14.62 0.00 2.69
2540 2884 1.593209 GTCGAAGCACCGGTGTCAA 60.593 57.895 33.92 9.20 0.00 3.18
2541 2885 2.028484 GTCGAAGCACCGGTGTCA 59.972 61.111 33.92 13.40 0.00 3.58
2542 2886 1.155424 TTTGTCGAAGCACCGGTGTC 61.155 55.000 33.92 25.30 0.00 3.67
2543 2887 0.534203 ATTTGTCGAAGCACCGGTGT 60.534 50.000 33.92 17.27 0.00 4.16
2546 2890 1.401018 GGAAATTTGTCGAAGCACCGG 60.401 52.381 0.00 0.00 0.00 5.28
2547 2891 1.265635 TGGAAATTTGTCGAAGCACCG 59.734 47.619 0.00 0.00 0.00 4.94
2551 2895 3.123453 GGCAATTGGAAATTTGTCGAAGC 59.877 43.478 7.72 0.00 0.00 3.86
2552 2896 4.305769 TGGCAATTGGAAATTTGTCGAAG 58.694 39.130 7.72 0.00 30.09 3.79
2554 2898 4.533919 ATGGCAATTGGAAATTTGTCGA 57.466 36.364 7.72 0.00 30.09 4.20
2555 2899 4.669708 GCAATGGCAATTGGAAATTTGTCG 60.670 41.667 15.68 0.00 42.98 4.35
2556 2900 4.725359 GCAATGGCAATTGGAAATTTGTC 58.275 39.130 15.68 0.00 42.98 3.18
2587 2931 6.528014 TTGCAAATAAAATGACTGCACAAG 57.472 33.333 0.00 0.00 42.38 3.16
2603 2947 3.871485 CTCCTCTGTCTAGCTTGCAAAT 58.129 45.455 0.00 0.00 0.00 2.32
2627 2971 2.799412 CAGATTATCGAGCTTCCACTGC 59.201 50.000 0.00 0.00 0.00 4.40
2634 2978 4.991153 TGACAGTCAGATTATCGAGCTT 57.009 40.909 0.00 0.00 0.00 3.74
2646 2990 3.144506 AGCAATCAAACCTGACAGTCAG 58.855 45.455 22.14 22.14 43.91 3.51
2673 3019 8.195436 TGACTGTAATTTGTACTATCTGGTAGC 58.805 37.037 0.00 0.00 33.47 3.58
2678 3024 9.639601 TTGTCTGACTGTAATTTGTACTATCTG 57.360 33.333 9.51 0.00 0.00 2.90
2682 3028 9.990360 TGATTTGTCTGACTGTAATTTGTACTA 57.010 29.630 9.51 0.00 0.00 1.82
2683 3029 8.902540 TGATTTGTCTGACTGTAATTTGTACT 57.097 30.769 9.51 0.00 0.00 2.73
2684 3030 9.546909 CATGATTTGTCTGACTGTAATTTGTAC 57.453 33.333 9.51 0.00 0.00 2.90
2685 3031 8.236586 GCATGATTTGTCTGACTGTAATTTGTA 58.763 33.333 9.51 0.00 0.00 2.41
2687 3033 7.085746 TGCATGATTTGTCTGACTGTAATTTG 58.914 34.615 9.51 8.85 0.00 2.32
2689 3035 6.822667 TGCATGATTTGTCTGACTGTAATT 57.177 33.333 9.51 0.00 0.00 1.40
2691 3037 6.631971 TTTGCATGATTTGTCTGACTGTAA 57.368 33.333 9.51 1.05 0.00 2.41
2692 3038 6.631971 TTTTGCATGATTTGTCTGACTGTA 57.368 33.333 9.51 0.00 0.00 2.74
2693 3039 5.518848 TTTTGCATGATTTGTCTGACTGT 57.481 34.783 9.51 0.00 0.00 3.55
2694 3040 6.090358 GGATTTTTGCATGATTTGTCTGACTG 59.910 38.462 9.51 0.00 0.00 3.51
2695 3041 6.161381 GGATTTTTGCATGATTTGTCTGACT 58.839 36.000 9.51 0.00 0.00 3.41
2696 3042 5.927689 TGGATTTTTGCATGATTTGTCTGAC 59.072 36.000 0.00 0.00 0.00 3.51
2697 3043 6.099159 TGGATTTTTGCATGATTTGTCTGA 57.901 33.333 0.00 0.00 0.00 3.27
2700 3046 5.391203 GCCTTGGATTTTTGCATGATTTGTC 60.391 40.000 0.00 0.00 0.00 3.18
2727 3078 5.863965 TCATCCCAAATTCAAAGGTTTTCC 58.136 37.500 0.00 0.00 41.05 3.13
2761 3112 9.073475 TGAACTTGCACAAAATTACTATTAGGT 57.927 29.630 0.00 0.00 0.00 3.08
2762 3113 9.559958 CTGAACTTGCACAAAATTACTATTAGG 57.440 33.333 0.00 0.00 0.00 2.69
2766 3117 8.165239 TGTCTGAACTTGCACAAAATTACTAT 57.835 30.769 0.00 0.00 0.00 2.12
2796 3148 5.917541 TTGTCGGTCAAATTCAGAAGTAC 57.082 39.130 0.00 0.00 32.64 2.73
2797 3149 5.995282 ACATTGTCGGTCAAATTCAGAAGTA 59.005 36.000 0.00 0.00 39.62 2.24
2798 3150 4.821805 ACATTGTCGGTCAAATTCAGAAGT 59.178 37.500 0.00 0.00 39.62 3.01
2910 3280 4.145052 GAGGGAAGGATTTTTGTGTGACT 58.855 43.478 0.00 0.00 0.00 3.41
2911 3281 3.255888 GGAGGGAAGGATTTTTGTGTGAC 59.744 47.826 0.00 0.00 0.00 3.67
2926 3296 4.089757 CGGGAGGGAGGGAGGGAA 62.090 72.222 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.