Multiple sequence alignment - TraesCS4D01G029600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G029600 chr4D 100.000 2671 0 0 1 2671 13097966 13095296 0.000000e+00 4933.0
1 TraesCS4D01G029600 chr4A 89.911 1348 49 35 1 1321 589471963 589473250 0.000000e+00 1655.0
2 TraesCS4D01G029600 chr4A 87.765 801 25 26 1399 2142 589473386 589474170 0.000000e+00 869.0
3 TraesCS4D01G029600 chr4B 86.947 1379 53 40 1 1357 23706966 23705693 0.000000e+00 1432.0
4 TraesCS4D01G029600 chr4B 90.898 824 35 12 1506 2305 23705544 23704737 0.000000e+00 1070.0
5 TraesCS4D01G029600 chr4B 79.577 142 5 6 2532 2671 23695121 23695002 2.200000e-11 80.5
6 TraesCS4D01G029600 chr7D 91.667 168 13 1 2305 2471 69631425 69631258 5.750000e-57 231.0
7 TraesCS4D01G029600 chr5A 91.124 169 14 1 2303 2471 29067001 29067168 7.440000e-56 228.0
8 TraesCS4D01G029600 chr3B 90.286 175 15 2 2298 2471 237637149 237637322 7.440000e-56 228.0
9 TraesCS4D01G029600 chr6D 91.071 168 13 2 2305 2471 312621828 312621662 2.680000e-55 226.0
10 TraesCS4D01G029600 chr6D 90.964 166 13 2 2307 2471 308594335 308594499 3.460000e-54 222.0
11 TraesCS4D01G029600 chr6D 90.964 166 14 1 2307 2471 455563805 455563640 3.460000e-54 222.0
12 TraesCS4D01G029600 chr2A 89.831 177 16 2 2295 2471 674504728 674504554 2.680000e-55 226.0
13 TraesCS4D01G029600 chr6A 90.964 166 14 1 2307 2471 602451034 602450869 3.460000e-54 222.0
14 TraesCS4D01G029600 chr2D 90.476 168 16 0 2304 2471 546582857 546583024 3.460000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G029600 chr4D 13095296 13097966 2670 True 4933 4933 100.0000 1 2671 1 chr4D.!!$R1 2670
1 TraesCS4D01G029600 chr4A 589471963 589474170 2207 False 1262 1655 88.8380 1 2142 2 chr4A.!!$F1 2141
2 TraesCS4D01G029600 chr4B 23704737 23706966 2229 True 1251 1432 88.9225 1 2305 2 chr4B.!!$R2 2304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.387878 CCTGCTCGATCGCTGATACC 60.388 60.0 11.09 0.00 0.0 2.73 F
501 507 0.390860 AGACCTGCTGTGTCTGTGTC 59.609 55.0 11.90 1.26 41.4 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1137 0.252479 CATCAGCTGCTCCAGTCCTT 59.748 55.0 9.47 0.0 33.43 3.36 R
2419 2656 0.104120 GGAAACAAGTGCGGCCTTTT 59.896 50.0 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 1.153168 ATGGTCGCTTTCCATCCCG 60.153 57.895 0.00 0.00 41.21 5.14
158 159 1.827344 GGGAAGAAGCAAAGGGAATGG 59.173 52.381 0.00 0.00 0.00 3.16
166 167 2.024306 GCAAAGGGAATGGCCTACCTC 61.024 57.143 3.32 0.00 36.63 3.85
202 203 4.292178 CGGCTCCCCTGCTCGATC 62.292 72.222 0.00 0.00 0.00 3.69
203 204 4.292178 GGCTCCCCTGCTCGATCG 62.292 72.222 9.36 9.36 0.00 3.69
204 205 4.959596 GCTCCCCTGCTCGATCGC 62.960 72.222 11.09 0.00 0.00 4.58
205 206 3.222855 CTCCCCTGCTCGATCGCT 61.223 66.667 11.09 0.00 0.00 4.93
211 212 0.387878 CCTGCTCGATCGCTGATACC 60.388 60.000 11.09 0.00 0.00 2.73
285 286 4.536765 GGTGGAATCATTGGAACCATACT 58.463 43.478 0.00 0.00 36.47 2.12
286 287 4.580580 GGTGGAATCATTGGAACCATACTC 59.419 45.833 0.00 0.00 36.47 2.59
287 288 5.192927 GTGGAATCATTGGAACCATACTCA 58.807 41.667 0.00 0.00 36.47 3.41
295 297 2.492088 TGGAACCATACTCACTCACTCG 59.508 50.000 0.00 0.00 0.00 4.18
299 301 2.755655 ACCATACTCACTCACTCGAAGG 59.244 50.000 0.00 0.00 0.00 3.46
301 303 3.066064 CCATACTCACTCACTCGAAGGAG 59.934 52.174 10.54 10.54 46.13 3.69
302 304 2.570415 ACTCACTCACTCGAAGGAGA 57.430 50.000 17.21 1.14 43.27 3.71
304 306 3.426615 ACTCACTCACTCGAAGGAGAAT 58.573 45.455 17.21 0.00 43.27 2.40
305 307 3.442273 ACTCACTCACTCGAAGGAGAATC 59.558 47.826 17.21 0.00 43.27 2.52
306 308 3.421844 TCACTCACTCGAAGGAGAATCA 58.578 45.455 17.21 0.00 43.27 2.57
307 309 4.019858 TCACTCACTCGAAGGAGAATCAT 58.980 43.478 17.21 0.00 43.27 2.45
330 332 5.765576 TCCTTACCAAAGCAACCATAGTA 57.234 39.130 0.00 0.00 0.00 1.82
331 333 5.741011 TCCTTACCAAAGCAACCATAGTAG 58.259 41.667 0.00 0.00 0.00 2.57
500 506 1.615883 CTAGACCTGCTGTGTCTGTGT 59.384 52.381 18.43 0.22 42.80 3.72
501 507 0.390860 AGACCTGCTGTGTCTGTGTC 59.609 55.000 11.90 1.26 41.40 3.67
502 508 0.390860 GACCTGCTGTGTCTGTGTCT 59.609 55.000 5.40 0.00 0.00 3.41
503 509 0.390860 ACCTGCTGTGTCTGTGTCTC 59.609 55.000 0.00 0.00 0.00 3.36
504 510 0.678395 CCTGCTGTGTCTGTGTCTCT 59.322 55.000 0.00 0.00 0.00 3.10
505 511 1.604947 CCTGCTGTGTCTGTGTCTCTG 60.605 57.143 0.00 0.00 0.00 3.35
587 593 1.068281 CGCCACATCTCTATCTGCTGT 59.932 52.381 0.00 0.00 0.00 4.40
588 594 2.482664 CGCCACATCTCTATCTGCTGTT 60.483 50.000 0.00 0.00 0.00 3.16
589 595 3.243535 CGCCACATCTCTATCTGCTGTTA 60.244 47.826 0.00 0.00 0.00 2.41
590 596 4.054671 GCCACATCTCTATCTGCTGTTAC 58.945 47.826 0.00 0.00 0.00 2.50
591 597 4.626042 CCACATCTCTATCTGCTGTTACC 58.374 47.826 0.00 0.00 0.00 2.85
592 598 4.343526 CCACATCTCTATCTGCTGTTACCT 59.656 45.833 0.00 0.00 0.00 3.08
593 599 5.288015 CACATCTCTATCTGCTGTTACCTG 58.712 45.833 0.00 0.00 0.00 4.00
594 600 4.959210 ACATCTCTATCTGCTGTTACCTGT 59.041 41.667 0.00 0.00 0.00 4.00
628 638 5.013704 TCAGGGGATCAAAGCTAAAACTACA 59.986 40.000 0.00 0.00 0.00 2.74
702 722 4.142138 ACCATACTATTATCGGCAGCTAGC 60.142 45.833 6.62 6.62 44.65 3.42
703 723 4.098654 CCATACTATTATCGGCAGCTAGCT 59.901 45.833 12.68 12.68 44.79 3.32
704 724 5.299531 CCATACTATTATCGGCAGCTAGCTA 59.700 44.000 18.86 1.28 44.79 3.32
705 725 4.974368 ACTATTATCGGCAGCTAGCTAG 57.026 45.455 18.86 16.84 44.79 3.42
725 745 4.737855 AGGACCATAGTATCACACACAC 57.262 45.455 0.00 0.00 0.00 3.82
726 746 4.353777 AGGACCATAGTATCACACACACT 58.646 43.478 0.00 0.00 0.00 3.55
727 747 4.402793 AGGACCATAGTATCACACACACTC 59.597 45.833 0.00 0.00 0.00 3.51
728 748 4.159693 GGACCATAGTATCACACACACTCA 59.840 45.833 0.00 0.00 0.00 3.41
729 749 5.073311 ACCATAGTATCACACACACTCAC 57.927 43.478 0.00 0.00 0.00 3.51
730 750 4.526650 ACCATAGTATCACACACACTCACA 59.473 41.667 0.00 0.00 0.00 3.58
736 756 0.923403 CACACACACTCACACACTCG 59.077 55.000 0.00 0.00 0.00 4.18
750 770 1.816224 ACACTCGCTCTCTCTTCTTCC 59.184 52.381 0.00 0.00 0.00 3.46
751 771 1.815613 CACTCGCTCTCTCTTCTTCCA 59.184 52.381 0.00 0.00 0.00 3.53
752 772 2.230025 CACTCGCTCTCTCTTCTTCCAA 59.770 50.000 0.00 0.00 0.00 3.53
753 773 2.894126 ACTCGCTCTCTCTTCTTCCAAA 59.106 45.455 0.00 0.00 0.00 3.28
754 774 3.513515 ACTCGCTCTCTCTTCTTCCAAAT 59.486 43.478 0.00 0.00 0.00 2.32
755 775 4.111916 CTCGCTCTCTCTTCTTCCAAATC 58.888 47.826 0.00 0.00 0.00 2.17
756 776 3.118956 TCGCTCTCTCTTCTTCCAAATCC 60.119 47.826 0.00 0.00 0.00 3.01
863 896 1.764180 GAGGAGGAGACGTCGTAGCG 61.764 65.000 10.46 0.00 37.94 4.26
871 904 3.838795 CGTCGTAGCGCTTGTGCC 61.839 66.667 18.68 0.00 35.36 5.01
899 932 2.222886 CTAGCTAGCTAGGCACGAGAA 58.777 52.381 34.95 9.76 41.58 2.87
935 968 2.200067 GAACTGATCAGCGATCACTGG 58.800 52.381 22.83 9.59 43.11 4.00
980 1019 2.549778 GCAGAAGCAAGAGAAGTCCAGT 60.550 50.000 0.00 0.00 41.58 4.00
981 1020 3.324993 CAGAAGCAAGAGAAGTCCAGTC 58.675 50.000 0.00 0.00 0.00 3.51
982 1021 2.968574 AGAAGCAAGAGAAGTCCAGTCA 59.031 45.455 0.00 0.00 0.00 3.41
983 1022 3.006752 AGAAGCAAGAGAAGTCCAGTCAG 59.993 47.826 0.00 0.00 0.00 3.51
984 1023 2.324541 AGCAAGAGAAGTCCAGTCAGT 58.675 47.619 0.00 0.00 0.00 3.41
985 1024 2.036992 AGCAAGAGAAGTCCAGTCAGTG 59.963 50.000 0.00 0.00 0.00 3.66
986 1025 2.036475 GCAAGAGAAGTCCAGTCAGTGA 59.964 50.000 0.00 0.00 0.00 3.41
987 1026 3.860378 GCAAGAGAAGTCCAGTCAGTGAG 60.860 52.174 0.00 0.00 0.00 3.51
988 1027 1.892474 AGAGAAGTCCAGTCAGTGAGC 59.108 52.381 0.00 0.00 0.00 4.26
1021 1060 2.749839 GCGGCATTGCTGGTGGTA 60.750 61.111 18.77 0.00 35.15 3.25
1075 1114 4.717629 CCGTGCTCTTGTCCGCGA 62.718 66.667 8.23 0.00 37.14 5.87
1104 1146 0.174845 CGAACGGCATAAGGACTGGA 59.825 55.000 0.00 0.00 0.00 3.86
1109 1151 0.817229 GGCATAAGGACTGGAGCAGC 60.817 60.000 0.00 0.00 34.37 5.25
1112 1154 1.483827 CATAAGGACTGGAGCAGCTGA 59.516 52.381 20.43 0.00 34.37 4.26
1314 1356 7.718334 TTGTTTACTCATCTCATCTCTGGTA 57.282 36.000 0.00 0.00 0.00 3.25
1321 1363 6.096705 ACTCATCTCATCTCTGGTAGTTCTTG 59.903 42.308 0.00 0.00 0.00 3.02
1322 1364 5.362143 TCATCTCATCTCTGGTAGTTCTTGG 59.638 44.000 0.00 0.00 0.00 3.61
1323 1365 3.449018 TCTCATCTCTGGTAGTTCTTGGC 59.551 47.826 0.00 0.00 0.00 4.52
1324 1366 3.445008 TCATCTCTGGTAGTTCTTGGCT 58.555 45.455 0.00 0.00 0.00 4.75
1325 1367 3.840666 TCATCTCTGGTAGTTCTTGGCTT 59.159 43.478 0.00 0.00 0.00 4.35
1326 1368 3.963428 TCTCTGGTAGTTCTTGGCTTC 57.037 47.619 0.00 0.00 0.00 3.86
1327 1369 3.511477 TCTCTGGTAGTTCTTGGCTTCT 58.489 45.455 0.00 0.00 0.00 2.85
1328 1370 3.904339 TCTCTGGTAGTTCTTGGCTTCTT 59.096 43.478 0.00 0.00 0.00 2.52
1329 1371 3.999663 CTCTGGTAGTTCTTGGCTTCTTG 59.000 47.826 0.00 0.00 0.00 3.02
1333 1375 4.202419 TGGTAGTTCTTGGCTTCTTGCTTA 60.202 41.667 0.00 0.00 42.39 3.09
1336 1378 4.464947 AGTTCTTGGCTTCTTGCTTACTT 58.535 39.130 0.00 0.00 42.39 2.24
1357 1499 6.503524 ACTTCAATTGTGCTCGTGTTTTAAT 58.496 32.000 5.13 0.00 0.00 1.40
1358 1500 6.978080 ACTTCAATTGTGCTCGTGTTTTAATT 59.022 30.769 5.13 0.00 0.00 1.40
1361 1503 7.644490 TCAATTGTGCTCGTGTTTTAATTACT 58.356 30.769 5.13 0.00 0.00 2.24
1362 1504 8.132362 TCAATTGTGCTCGTGTTTTAATTACTT 58.868 29.630 5.13 0.00 0.00 2.24
1364 1506 6.854496 TGTGCTCGTGTTTTAATTACTTCT 57.146 33.333 0.00 0.00 0.00 2.85
1365 1507 6.884187 TGTGCTCGTGTTTTAATTACTTCTC 58.116 36.000 0.00 0.00 0.00 2.87
1366 1508 6.704493 TGTGCTCGTGTTTTAATTACTTCTCT 59.296 34.615 0.00 0.00 0.00 3.10
1367 1509 7.868922 TGTGCTCGTGTTTTAATTACTTCTCTA 59.131 33.333 0.00 0.00 0.00 2.43
1368 1510 8.373992 GTGCTCGTGTTTTAATTACTTCTCTAG 58.626 37.037 0.00 0.00 0.00 2.43
1369 1511 7.063074 TGCTCGTGTTTTAATTACTTCTCTAGC 59.937 37.037 0.00 0.00 0.00 3.42
1370 1512 7.063074 GCTCGTGTTTTAATTACTTCTCTAGCA 59.937 37.037 0.00 0.00 0.00 3.49
1371 1513 8.236084 TCGTGTTTTAATTACTTCTCTAGCAC 57.764 34.615 0.00 0.00 0.00 4.40
1372 1514 7.868922 TCGTGTTTTAATTACTTCTCTAGCACA 59.131 33.333 0.00 0.00 0.00 4.57
1373 1515 8.492748 CGTGTTTTAATTACTTCTCTAGCACAA 58.507 33.333 0.00 0.00 0.00 3.33
1380 1522 7.906199 ATTACTTCTCTAGCACAATACCTCT 57.094 36.000 0.00 0.00 0.00 3.69
1381 1523 8.998277 ATTACTTCTCTAGCACAATACCTCTA 57.002 34.615 0.00 0.00 0.00 2.43
1382 1524 8.818622 TTACTTCTCTAGCACAATACCTCTAA 57.181 34.615 0.00 0.00 0.00 2.10
1383 1525 7.102847 ACTTCTCTAGCACAATACCTCTAAC 57.897 40.000 0.00 0.00 0.00 2.34
1384 1526 6.663953 ACTTCTCTAGCACAATACCTCTAACA 59.336 38.462 0.00 0.00 0.00 2.41
1385 1527 7.178628 ACTTCTCTAGCACAATACCTCTAACAA 59.821 37.037 0.00 0.00 0.00 2.83
1386 1528 7.476540 TCTCTAGCACAATACCTCTAACAAA 57.523 36.000 0.00 0.00 0.00 2.83
1387 1529 7.903145 TCTCTAGCACAATACCTCTAACAAAA 58.097 34.615 0.00 0.00 0.00 2.44
1388 1530 8.540388 TCTCTAGCACAATACCTCTAACAAAAT 58.460 33.333 0.00 0.00 0.00 1.82
1389 1531 9.167311 CTCTAGCACAATACCTCTAACAAAATT 57.833 33.333 0.00 0.00 0.00 1.82
1392 1534 8.630054 AGCACAATACCTCTAACAAAATTACA 57.370 30.769 0.00 0.00 0.00 2.41
1393 1535 8.512138 AGCACAATACCTCTAACAAAATTACAC 58.488 33.333 0.00 0.00 0.00 2.90
1394 1536 7.753580 GCACAATACCTCTAACAAAATTACACC 59.246 37.037 0.00 0.00 0.00 4.16
1395 1537 9.010029 CACAATACCTCTAACAAAATTACACCT 57.990 33.333 0.00 0.00 0.00 4.00
1470 1638 6.698329 TGCAAATGCTAATAATGCAGAATCAC 59.302 34.615 6.97 0.00 44.04 3.06
1541 1728 1.611419 CTGGTCCCCTGCATCATGT 59.389 57.895 0.00 0.00 0.00 3.21
1587 1774 1.136891 GGCTTGTTTTGCCTCTTGTGT 59.863 47.619 0.00 0.00 46.38 3.72
1621 1808 3.928727 AGACCATGATGTGTTTGCTTG 57.071 42.857 0.00 0.00 0.00 4.01
1622 1809 2.029649 AGACCATGATGTGTTTGCTTGC 60.030 45.455 0.00 0.00 0.00 4.01
1623 1810 1.965643 ACCATGATGTGTTTGCTTGCT 59.034 42.857 0.00 0.00 0.00 3.91
1624 1811 2.366266 ACCATGATGTGTTTGCTTGCTT 59.634 40.909 0.00 0.00 0.00 3.91
1813 2019 5.306160 TGGTGGAGGGCAGTTATATAGTTAC 59.694 44.000 0.00 0.00 0.00 2.50
1953 2159 7.707104 TCTCTTGATGAGGTTTTGTTCTTTTC 58.293 34.615 0.00 0.00 42.86 2.29
1998 2204 5.336451 GGGTTAATGGTGTTAAAAGGAGCAG 60.336 44.000 0.00 0.00 0.00 4.24
2006 2237 4.338400 GTGTTAAAAGGAGCAGTCCAACTT 59.662 41.667 0.00 0.00 46.80 2.66
2015 2248 4.323104 GGAGCAGTCCAACTTACTTCTCAT 60.323 45.833 5.50 0.00 43.31 2.90
2016 2249 5.234466 AGCAGTCCAACTTACTTCTCATT 57.766 39.130 0.00 0.00 0.00 2.57
2066 2303 3.881688 GGCATGCACAGATTCTACTTCAT 59.118 43.478 21.36 0.00 0.00 2.57
2067 2304 4.337555 GGCATGCACAGATTCTACTTCATT 59.662 41.667 21.36 0.00 0.00 2.57
2142 2379 3.737774 GCATGCTTTCAAAGGACTCAAAC 59.262 43.478 11.37 0.00 0.00 2.93
2156 2393 3.381949 ACTCAAACGACTAGTGAGCAAC 58.618 45.455 0.00 0.00 42.09 4.17
2163 2400 6.754702 AACGACTAGTGAGCAACTCTAATA 57.245 37.500 0.00 0.00 40.56 0.98
2175 2412 3.853355 ACTCTAATAAGCTGCAGCCAT 57.147 42.857 34.39 25.30 43.38 4.40
2196 2433 6.039717 GCCATCAAGCTGTAAGGATCAAAATA 59.960 38.462 0.00 0.00 0.00 1.40
2251 2488 5.888161 AGGGAAGCAGGATGTAAATTTACAG 59.112 40.000 29.25 19.37 45.80 2.74
2275 2512 1.681793 GCTGCAGCATGAATCCAAGAT 59.318 47.619 33.36 0.00 39.69 2.40
2276 2513 2.287668 GCTGCAGCATGAATCCAAGATC 60.288 50.000 33.36 0.00 39.69 2.75
2277 2514 2.949644 CTGCAGCATGAATCCAAGATCA 59.050 45.455 0.00 0.00 39.69 2.92
2278 2515 3.562182 TGCAGCATGAATCCAAGATCAT 58.438 40.909 0.00 0.00 39.69 2.45
2280 2517 4.202111 TGCAGCATGAATCCAAGATCATTG 60.202 41.667 0.00 0.00 39.69 2.82
2281 2518 4.202121 GCAGCATGAATCCAAGATCATTGT 60.202 41.667 0.00 0.00 39.69 2.71
2282 2519 5.281727 CAGCATGAATCCAAGATCATTGTG 58.718 41.667 0.00 0.00 39.69 3.33
2283 2520 5.067283 CAGCATGAATCCAAGATCATTGTGA 59.933 40.000 0.00 0.00 39.69 3.58
2285 2522 5.747197 GCATGAATCCAAGATCATTGTGAAC 59.253 40.000 0.00 0.00 34.12 3.18
2292 2529 5.700832 TCCAAGATCATTGTGAACAGTGTAC 59.299 40.000 0.00 0.00 35.43 2.90
2294 2531 4.245660 AGATCATTGTGAACAGTGTACGG 58.754 43.478 0.00 0.00 35.43 4.02
2305 2542 2.429610 ACAGTGTACGGTGGGTCATATC 59.570 50.000 0.00 0.00 0.00 1.63
2306 2543 2.693591 CAGTGTACGGTGGGTCATATCT 59.306 50.000 0.00 0.00 0.00 1.98
2307 2544 2.957006 AGTGTACGGTGGGTCATATCTC 59.043 50.000 0.00 0.00 0.00 2.75
2308 2545 2.957006 GTGTACGGTGGGTCATATCTCT 59.043 50.000 0.00 0.00 0.00 3.10
2309 2546 4.139786 GTGTACGGTGGGTCATATCTCTA 58.860 47.826 0.00 0.00 0.00 2.43
2310 2547 4.023365 GTGTACGGTGGGTCATATCTCTAC 60.023 50.000 0.00 0.00 0.00 2.59
2311 2548 3.596940 ACGGTGGGTCATATCTCTACT 57.403 47.619 0.00 0.00 0.00 2.57
2312 2549 3.488363 ACGGTGGGTCATATCTCTACTC 58.512 50.000 0.00 0.00 0.00 2.59
2313 2550 2.820787 CGGTGGGTCATATCTCTACTCC 59.179 54.545 0.00 0.00 0.00 3.85
2314 2551 3.498841 CGGTGGGTCATATCTCTACTCCT 60.499 52.174 0.00 0.00 0.00 3.69
2315 2552 4.263374 CGGTGGGTCATATCTCTACTCCTA 60.263 50.000 0.00 0.00 0.00 2.94
2316 2553 5.573914 CGGTGGGTCATATCTCTACTCCTAT 60.574 48.000 0.00 0.00 0.00 2.57
2317 2554 6.352823 CGGTGGGTCATATCTCTACTCCTATA 60.353 46.154 0.00 0.00 0.00 1.31
2318 2555 7.411808 GGTGGGTCATATCTCTACTCCTATAA 58.588 42.308 0.00 0.00 0.00 0.98
2319 2556 7.894364 GGTGGGTCATATCTCTACTCCTATAAA 59.106 40.741 0.00 0.00 0.00 1.40
2320 2557 9.310449 GTGGGTCATATCTCTACTCCTATAAAA 57.690 37.037 0.00 0.00 0.00 1.52
2321 2558 9.892444 TGGGTCATATCTCTACTCCTATAAAAA 57.108 33.333 0.00 0.00 0.00 1.94
2331 2568 9.757227 CTCTACTCCTATAAAAATCTGAGTTGG 57.243 37.037 0.00 0.00 35.01 3.77
2332 2569 9.268282 TCTACTCCTATAAAAATCTGAGTTGGT 57.732 33.333 0.00 0.00 35.01 3.67
2333 2570 9.319143 CTACTCCTATAAAAATCTGAGTTGGTG 57.681 37.037 0.00 0.00 35.01 4.17
2334 2571 7.918076 ACTCCTATAAAAATCTGAGTTGGTGA 58.082 34.615 0.00 0.00 29.20 4.02
2335 2572 8.552296 ACTCCTATAAAAATCTGAGTTGGTGAT 58.448 33.333 0.00 0.00 29.20 3.06
2336 2573 8.737168 TCCTATAAAAATCTGAGTTGGTGATG 57.263 34.615 0.00 0.00 0.00 3.07
2337 2574 8.548025 TCCTATAAAAATCTGAGTTGGTGATGA 58.452 33.333 0.00 0.00 0.00 2.92
2338 2575 9.347240 CCTATAAAAATCTGAGTTGGTGATGAT 57.653 33.333 0.00 0.00 0.00 2.45
2340 2577 5.909621 AAAATCTGAGTTGGTGATGATGG 57.090 39.130 0.00 0.00 0.00 3.51
2341 2578 4.581309 AATCTGAGTTGGTGATGATGGT 57.419 40.909 0.00 0.00 0.00 3.55
2342 2579 3.339253 TCTGAGTTGGTGATGATGGTG 57.661 47.619 0.00 0.00 0.00 4.17
2343 2580 2.639347 TCTGAGTTGGTGATGATGGTGT 59.361 45.455 0.00 0.00 0.00 4.16
2344 2581 2.745821 CTGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
2345 2582 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
2346 2583 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
2347 2584 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
2348 2585 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
2349 2586 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
2350 2587 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
2351 2588 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
2354 2591 3.093555 ATGGTGTGCCTGCCATCT 58.906 55.556 0.00 0.00 41.24 2.90
2355 2592 2.310251 ATGGTGTGCCTGCCATCTA 58.690 52.632 0.00 0.00 41.24 1.98
2356 2593 0.848735 ATGGTGTGCCTGCCATCTAT 59.151 50.000 0.00 0.00 41.24 1.98
2357 2594 0.181114 TGGTGTGCCTGCCATCTATC 59.819 55.000 0.00 0.00 35.27 2.08
2358 2595 0.181114 GGTGTGCCTGCCATCTATCA 59.819 55.000 0.00 0.00 0.00 2.15
2359 2596 1.303309 GTGTGCCTGCCATCTATCAC 58.697 55.000 0.00 0.00 0.00 3.06
2360 2597 0.181114 TGTGCCTGCCATCTATCACC 59.819 55.000 0.00 0.00 0.00 4.02
2361 2598 0.181114 GTGCCTGCCATCTATCACCA 59.819 55.000 0.00 0.00 0.00 4.17
2362 2599 0.918258 TGCCTGCCATCTATCACCAA 59.082 50.000 0.00 0.00 0.00 3.67
2363 2600 1.496001 TGCCTGCCATCTATCACCAAT 59.504 47.619 0.00 0.00 0.00 3.16
2364 2601 2.091720 TGCCTGCCATCTATCACCAATT 60.092 45.455 0.00 0.00 0.00 2.32
2365 2602 2.295349 GCCTGCCATCTATCACCAATTG 59.705 50.000 0.00 0.00 0.00 2.32
2366 2603 2.295349 CCTGCCATCTATCACCAATTGC 59.705 50.000 0.00 0.00 0.00 3.56
2367 2604 2.295349 CTGCCATCTATCACCAATTGCC 59.705 50.000 0.00 0.00 0.00 4.52
2368 2605 1.267806 GCCATCTATCACCAATTGCCG 59.732 52.381 0.00 0.00 0.00 5.69
2369 2606 2.575532 CCATCTATCACCAATTGCCGT 58.424 47.619 0.00 0.00 0.00 5.68
2370 2607 2.549754 CCATCTATCACCAATTGCCGTC 59.450 50.000 0.00 0.00 0.00 4.79
2371 2608 1.934589 TCTATCACCAATTGCCGTCG 58.065 50.000 0.00 0.00 0.00 5.12
2372 2609 0.937304 CTATCACCAATTGCCGTCGG 59.063 55.000 6.99 6.99 0.00 4.79
2373 2610 0.537653 TATCACCAATTGCCGTCGGA 59.462 50.000 17.49 0.00 0.00 4.55
2374 2611 0.107214 ATCACCAATTGCCGTCGGAT 60.107 50.000 17.49 0.00 0.00 4.18
2375 2612 0.742990 TCACCAATTGCCGTCGGATC 60.743 55.000 17.49 0.00 0.00 3.36
2376 2613 0.744414 CACCAATTGCCGTCGGATCT 60.744 55.000 17.49 0.00 0.00 2.75
2377 2614 0.744414 ACCAATTGCCGTCGGATCTG 60.744 55.000 17.49 5.80 0.00 2.90
2378 2615 0.461870 CCAATTGCCGTCGGATCTGA 60.462 55.000 17.49 0.00 0.00 3.27
2379 2616 1.368641 CAATTGCCGTCGGATCTGAA 58.631 50.000 17.49 0.00 0.00 3.02
2380 2617 1.942657 CAATTGCCGTCGGATCTGAAT 59.057 47.619 17.49 1.44 0.00 2.57
2381 2618 2.332063 ATTGCCGTCGGATCTGAATT 57.668 45.000 17.49 0.00 0.00 2.17
2382 2619 2.107950 TTGCCGTCGGATCTGAATTT 57.892 45.000 17.49 0.00 0.00 1.82
2383 2620 1.368641 TGCCGTCGGATCTGAATTTG 58.631 50.000 17.49 0.00 0.00 2.32
2384 2621 1.066502 TGCCGTCGGATCTGAATTTGA 60.067 47.619 17.49 0.00 0.00 2.69
2385 2622 1.327764 GCCGTCGGATCTGAATTTGAC 59.672 52.381 17.49 0.00 0.00 3.18
2386 2623 1.588404 CCGTCGGATCTGAATTTGACG 59.412 52.381 4.91 5.03 46.20 4.35
2387 2624 1.005975 CGTCGGATCTGAATTTGACGC 60.006 52.381 5.62 0.00 41.95 5.19
2388 2625 1.999735 GTCGGATCTGAATTTGACGCA 59.000 47.619 5.62 0.00 0.00 5.24
2389 2626 2.609459 GTCGGATCTGAATTTGACGCAT 59.391 45.455 5.62 0.00 0.00 4.73
2390 2627 3.802139 GTCGGATCTGAATTTGACGCATA 59.198 43.478 5.62 0.00 0.00 3.14
2391 2628 3.802139 TCGGATCTGAATTTGACGCATAC 59.198 43.478 0.39 0.00 0.00 2.39
2392 2629 3.555547 CGGATCTGAATTTGACGCATACA 59.444 43.478 0.00 0.00 0.00 2.29
2393 2630 4.033932 CGGATCTGAATTTGACGCATACAA 59.966 41.667 0.00 0.00 0.00 2.41
2394 2631 5.447144 CGGATCTGAATTTGACGCATACAAA 60.447 40.000 0.00 0.00 40.62 2.83
2395 2632 5.967674 GGATCTGAATTTGACGCATACAAAG 59.032 40.000 0.00 0.00 39.90 2.77
2396 2633 4.722194 TCTGAATTTGACGCATACAAAGC 58.278 39.130 0.00 0.00 39.90 3.51
2397 2634 4.215185 TCTGAATTTGACGCATACAAAGCA 59.785 37.500 0.00 0.00 39.90 3.91
2398 2635 4.864633 TGAATTTGACGCATACAAAGCAA 58.135 34.783 0.00 0.00 39.90 3.91
2399 2636 5.284864 TGAATTTGACGCATACAAAGCAAA 58.715 33.333 0.00 0.00 39.90 3.68
2400 2637 5.174761 TGAATTTGACGCATACAAAGCAAAC 59.825 36.000 0.00 0.00 39.90 2.93
2401 2638 3.980646 TTGACGCATACAAAGCAAACT 57.019 38.095 0.00 0.00 0.00 2.66
2402 2639 3.266541 TGACGCATACAAAGCAAACTG 57.733 42.857 0.00 0.00 0.00 3.16
2403 2640 2.616376 TGACGCATACAAAGCAAACTGT 59.384 40.909 0.00 0.00 0.00 3.55
2404 2641 3.066064 TGACGCATACAAAGCAAACTGTT 59.934 39.130 0.00 0.00 0.00 3.16
2405 2642 3.371168 ACGCATACAAAGCAAACTGTTG 58.629 40.909 0.00 0.00 37.83 3.33
2426 2663 3.950087 CAGTTTTGCAAGAAAAAGGCC 57.050 42.857 0.00 0.00 29.93 5.19
2427 2664 2.284952 CAGTTTTGCAAGAAAAAGGCCG 59.715 45.455 0.00 0.00 29.93 6.13
2428 2665 1.003972 GTTTTGCAAGAAAAAGGCCGC 60.004 47.619 0.00 0.00 29.93 6.53
2429 2666 0.176680 TTTGCAAGAAAAAGGCCGCA 59.823 45.000 0.00 0.00 0.00 5.69
2430 2667 0.529555 TTGCAAGAAAAAGGCCGCAC 60.530 50.000 0.00 0.00 0.00 5.34
2431 2668 1.363807 GCAAGAAAAAGGCCGCACT 59.636 52.632 0.00 0.00 0.00 4.40
2432 2669 0.249447 GCAAGAAAAAGGCCGCACTT 60.249 50.000 0.00 0.00 0.00 3.16
2433 2670 1.490621 CAAGAAAAAGGCCGCACTTG 58.509 50.000 13.37 13.37 0.00 3.16
2434 2671 1.111277 AAGAAAAAGGCCGCACTTGT 58.889 45.000 0.00 0.00 0.00 3.16
2435 2672 1.111277 AGAAAAAGGCCGCACTTGTT 58.889 45.000 0.00 0.00 30.71 2.83
2436 2673 1.480545 AGAAAAAGGCCGCACTTGTTT 59.519 42.857 0.00 0.00 28.24 2.83
2437 2674 1.858458 GAAAAAGGCCGCACTTGTTTC 59.142 47.619 0.00 0.00 28.24 2.78
2438 2675 0.104120 AAAAGGCCGCACTTGTTTCC 59.896 50.000 0.00 0.00 0.00 3.13
2439 2676 1.040339 AAAGGCCGCACTTGTTTCCA 61.040 50.000 0.00 0.00 0.00 3.53
2440 2677 0.827507 AAGGCCGCACTTGTTTCCAT 60.828 50.000 0.00 0.00 0.00 3.41
2441 2678 0.037590 AGGCCGCACTTGTTTCCATA 59.962 50.000 0.00 0.00 0.00 2.74
2442 2679 1.102978 GGCCGCACTTGTTTCCATAT 58.897 50.000 0.00 0.00 0.00 1.78
2443 2680 1.476488 GGCCGCACTTGTTTCCATATT 59.524 47.619 0.00 0.00 0.00 1.28
2444 2681 2.094234 GGCCGCACTTGTTTCCATATTT 60.094 45.455 0.00 0.00 0.00 1.40
2445 2682 3.129638 GGCCGCACTTGTTTCCATATTTA 59.870 43.478 0.00 0.00 0.00 1.40
2446 2683 4.102649 GCCGCACTTGTTTCCATATTTAC 58.897 43.478 0.00 0.00 0.00 2.01
2447 2684 4.380023 GCCGCACTTGTTTCCATATTTACA 60.380 41.667 0.00 0.00 0.00 2.41
2448 2685 5.704888 CCGCACTTGTTTCCATATTTACAA 58.295 37.500 0.00 0.00 0.00 2.41
2449 2686 6.153067 CCGCACTTGTTTCCATATTTACAAA 58.847 36.000 0.00 0.00 30.87 2.83
2450 2687 6.088883 CCGCACTTGTTTCCATATTTACAAAC 59.911 38.462 0.00 0.00 30.87 2.93
2451 2688 6.638873 CGCACTTGTTTCCATATTTACAAACA 59.361 34.615 0.00 0.00 37.04 2.83
2452 2689 7.168302 CGCACTTGTTTCCATATTTACAAACAA 59.832 33.333 8.18 8.18 43.21 2.83
2453 2690 8.272866 GCACTTGTTTCCATATTTACAAACAAC 58.727 33.333 5.02 0.00 41.52 3.32
2454 2691 9.528018 CACTTGTTTCCATATTTACAAACAACT 57.472 29.630 5.02 0.00 41.52 3.16
2455 2692 9.744468 ACTTGTTTCCATATTTACAAACAACTC 57.256 29.630 5.02 0.00 41.52 3.01
2456 2693 9.191995 CTTGTTTCCATATTTACAAACAACTCC 57.808 33.333 5.02 0.00 41.52 3.85
2457 2694 8.472007 TGTTTCCATATTTACAAACAACTCCT 57.528 30.769 0.00 0.00 36.14 3.69
2458 2695 8.919145 TGTTTCCATATTTACAAACAACTCCTT 58.081 29.630 0.00 0.00 36.14 3.36
2459 2696 9.191995 GTTTCCATATTTACAAACAACTCCTTG 57.808 33.333 0.00 0.00 0.00 3.61
2460 2697 8.472007 TTCCATATTTACAAACAACTCCTTGT 57.528 30.769 0.00 0.00 42.81 3.16
2461 2698 8.106247 TCCATATTTACAAACAACTCCTTGTC 57.894 34.615 0.00 0.00 39.88 3.18
2462 2699 7.942341 TCCATATTTACAAACAACTCCTTGTCT 59.058 33.333 0.00 0.00 39.88 3.41
2463 2700 8.237267 CCATATTTACAAACAACTCCTTGTCTC 58.763 37.037 0.00 0.00 39.88 3.36
2464 2701 9.003658 CATATTTACAAACAACTCCTTGTCTCT 57.996 33.333 0.00 0.00 39.88 3.10
2465 2702 6.920569 TTTACAAACAACTCCTTGTCTCTC 57.079 37.500 0.00 0.00 39.88 3.20
2466 2703 4.487714 ACAAACAACTCCTTGTCTCTCA 57.512 40.909 0.00 0.00 39.88 3.27
2467 2704 4.192317 ACAAACAACTCCTTGTCTCTCAC 58.808 43.478 0.00 0.00 39.88 3.51
2468 2705 4.191544 CAAACAACTCCTTGTCTCTCACA 58.808 43.478 0.00 0.00 39.88 3.58
2469 2706 4.487714 AACAACTCCTTGTCTCTCACAA 57.512 40.909 0.00 0.00 43.12 3.33
2470 2707 4.696479 ACAACTCCTTGTCTCTCACAAT 57.304 40.909 0.00 0.00 44.32 2.71
2471 2708 5.041191 ACAACTCCTTGTCTCTCACAATT 57.959 39.130 0.00 0.00 44.32 2.32
2472 2709 4.818546 ACAACTCCTTGTCTCTCACAATTG 59.181 41.667 3.24 3.24 44.32 2.32
2473 2710 4.696479 ACTCCTTGTCTCTCACAATTGT 57.304 40.909 4.92 4.92 44.32 2.71
2474 2711 5.041191 ACTCCTTGTCTCTCACAATTGTT 57.959 39.130 8.77 0.00 44.32 2.83
2475 2712 5.059833 ACTCCTTGTCTCTCACAATTGTTC 58.940 41.667 8.77 0.00 44.32 3.18
2476 2713 4.389374 TCCTTGTCTCTCACAATTGTTCC 58.611 43.478 8.77 0.00 44.32 3.62
2477 2714 3.503748 CCTTGTCTCTCACAATTGTTCCC 59.496 47.826 8.77 0.00 44.32 3.97
2478 2715 3.855255 TGTCTCTCACAATTGTTCCCA 57.145 42.857 8.77 0.00 29.30 4.37
2479 2716 3.476552 TGTCTCTCACAATTGTTCCCAC 58.523 45.455 8.77 3.16 29.30 4.61
2480 2717 3.136443 TGTCTCTCACAATTGTTCCCACT 59.864 43.478 8.77 0.00 29.30 4.00
2481 2718 3.748568 GTCTCTCACAATTGTTCCCACTC 59.251 47.826 8.77 0.00 0.00 3.51
2482 2719 3.077359 CTCTCACAATTGTTCCCACTCC 58.923 50.000 8.77 0.00 0.00 3.85
2483 2720 2.162681 CTCACAATTGTTCCCACTCCC 58.837 52.381 8.77 0.00 0.00 4.30
2484 2721 1.496857 TCACAATTGTTCCCACTCCCA 59.503 47.619 8.77 0.00 0.00 4.37
2485 2722 1.613437 CACAATTGTTCCCACTCCCAC 59.387 52.381 8.77 0.00 0.00 4.61
2486 2723 1.256812 CAATTGTTCCCACTCCCACC 58.743 55.000 0.00 0.00 0.00 4.61
2487 2724 0.856982 AATTGTTCCCACTCCCACCA 59.143 50.000 0.00 0.00 0.00 4.17
2488 2725 0.112412 ATTGTTCCCACTCCCACCAC 59.888 55.000 0.00 0.00 0.00 4.16
2489 2726 1.282653 TTGTTCCCACTCCCACCACA 61.283 55.000 0.00 0.00 0.00 4.17
2490 2727 1.282653 TGTTCCCACTCCCACCACAA 61.283 55.000 0.00 0.00 0.00 3.33
2491 2728 0.112412 GTTCCCACTCCCACCACAAT 59.888 55.000 0.00 0.00 0.00 2.71
2492 2729 1.353022 GTTCCCACTCCCACCACAATA 59.647 52.381 0.00 0.00 0.00 1.90
2493 2730 1.979809 TCCCACTCCCACCACAATAT 58.020 50.000 0.00 0.00 0.00 1.28
2494 2731 3.138123 TCCCACTCCCACCACAATATA 57.862 47.619 0.00 0.00 0.00 0.86
2495 2732 3.045634 TCCCACTCCCACCACAATATAG 58.954 50.000 0.00 0.00 0.00 1.31
2496 2733 2.487265 CCCACTCCCACCACAATATAGC 60.487 54.545 0.00 0.00 0.00 2.97
2497 2734 2.439507 CCACTCCCACCACAATATAGCT 59.560 50.000 0.00 0.00 0.00 3.32
2498 2735 3.117888 CCACTCCCACCACAATATAGCTT 60.118 47.826 0.00 0.00 0.00 3.74
2499 2736 4.526970 CACTCCCACCACAATATAGCTTT 58.473 43.478 0.00 0.00 0.00 3.51
2500 2737 5.397447 CCACTCCCACCACAATATAGCTTTA 60.397 44.000 0.00 0.00 0.00 1.85
2501 2738 6.119536 CACTCCCACCACAATATAGCTTTAA 58.880 40.000 0.00 0.00 0.00 1.52
2502 2739 6.772716 CACTCCCACCACAATATAGCTTTAAT 59.227 38.462 0.00 0.00 0.00 1.40
2503 2740 6.772716 ACTCCCACCACAATATAGCTTTAATG 59.227 38.462 0.00 0.00 0.00 1.90
2504 2741 6.668645 TCCCACCACAATATAGCTTTAATGT 58.331 36.000 0.00 0.00 0.00 2.71
2505 2742 6.545666 TCCCACCACAATATAGCTTTAATGTG 59.454 38.462 19.68 19.68 38.25 3.21
2506 2743 6.545666 CCCACCACAATATAGCTTTAATGTGA 59.454 38.462 25.20 0.00 40.32 3.58
2507 2744 7.417612 CCACCACAATATAGCTTTAATGTGAC 58.582 38.462 25.20 0.00 40.32 3.67
2508 2745 7.283127 CCACCACAATATAGCTTTAATGTGACT 59.717 37.037 25.20 12.49 40.32 3.41
2509 2746 8.124823 CACCACAATATAGCTTTAATGTGACTG 58.875 37.037 25.20 17.89 40.32 3.51
2510 2747 8.046708 ACCACAATATAGCTTTAATGTGACTGA 58.953 33.333 25.20 0.00 40.32 3.41
2511 2748 8.338259 CCACAATATAGCTTTAATGTGACTGAC 58.662 37.037 25.20 0.00 40.32 3.51
2512 2749 8.338259 CACAATATAGCTTTAATGTGACTGACC 58.662 37.037 21.22 0.00 40.32 4.02
2513 2750 7.499232 ACAATATAGCTTTAATGTGACTGACCC 59.501 37.037 4.33 0.00 0.00 4.46
2514 2751 3.788227 AGCTTTAATGTGACTGACCCA 57.212 42.857 0.00 0.00 0.00 4.51
2515 2752 4.098914 AGCTTTAATGTGACTGACCCAA 57.901 40.909 0.00 0.00 0.00 4.12
2516 2753 4.074970 AGCTTTAATGTGACTGACCCAAG 58.925 43.478 0.00 0.00 0.00 3.61
2517 2754 3.366374 GCTTTAATGTGACTGACCCAAGC 60.366 47.826 0.00 0.00 0.00 4.01
2518 2755 2.489938 TAATGTGACTGACCCAAGCC 57.510 50.000 0.00 0.00 0.00 4.35
2519 2756 0.773644 AATGTGACTGACCCAAGCCT 59.226 50.000 0.00 0.00 0.00 4.58
2520 2757 0.326264 ATGTGACTGACCCAAGCCTC 59.674 55.000 0.00 0.00 0.00 4.70
2521 2758 0.764369 TGTGACTGACCCAAGCCTCT 60.764 55.000 0.00 0.00 0.00 3.69
2522 2759 0.321122 GTGACTGACCCAAGCCTCTG 60.321 60.000 0.00 0.00 0.00 3.35
2523 2760 1.376553 GACTGACCCAAGCCTCTGC 60.377 63.158 0.00 0.00 37.95 4.26
2524 2761 2.116983 GACTGACCCAAGCCTCTGCA 62.117 60.000 0.00 0.00 41.13 4.41
2525 2762 1.673665 CTGACCCAAGCCTCTGCAC 60.674 63.158 0.00 0.00 41.13 4.57
2526 2763 2.401699 CTGACCCAAGCCTCTGCACA 62.402 60.000 0.00 0.00 41.13 4.57
2527 2764 1.968540 GACCCAAGCCTCTGCACAC 60.969 63.158 0.00 0.00 41.13 3.82
2528 2765 2.113774 CCCAAGCCTCTGCACACA 59.886 61.111 0.00 0.00 41.13 3.72
2529 2766 2.263741 CCCAAGCCTCTGCACACAC 61.264 63.158 0.00 0.00 41.13 3.82
2530 2767 1.228063 CCAAGCCTCTGCACACACT 60.228 57.895 0.00 0.00 41.13 3.55
2531 2768 0.820891 CCAAGCCTCTGCACACACTT 60.821 55.000 0.00 0.00 41.13 3.16
2532 2769 1.543208 CCAAGCCTCTGCACACACTTA 60.543 52.381 0.00 0.00 41.13 2.24
2533 2770 1.532868 CAAGCCTCTGCACACACTTAC 59.467 52.381 0.00 0.00 41.13 2.34
2534 2771 0.758734 AGCCTCTGCACACACTTACA 59.241 50.000 0.00 0.00 41.13 2.41
2535 2772 1.349026 AGCCTCTGCACACACTTACAT 59.651 47.619 0.00 0.00 41.13 2.29
2536 2773 2.154462 GCCTCTGCACACACTTACATT 58.846 47.619 0.00 0.00 37.47 2.71
2537 2774 2.554032 GCCTCTGCACACACTTACATTT 59.446 45.455 0.00 0.00 37.47 2.32
2538 2775 3.610114 GCCTCTGCACACACTTACATTTG 60.610 47.826 0.00 0.00 37.47 2.32
2539 2776 3.814842 CCTCTGCACACACTTACATTTGA 59.185 43.478 0.00 0.00 0.00 2.69
2540 2777 4.083643 CCTCTGCACACACTTACATTTGAG 60.084 45.833 0.00 0.00 0.00 3.02
2541 2778 4.450976 TCTGCACACACTTACATTTGAGT 58.549 39.130 0.00 0.00 0.00 3.41
2542 2779 5.606505 TCTGCACACACTTACATTTGAGTA 58.393 37.500 0.00 0.00 0.00 2.59
2543 2780 5.465390 TCTGCACACACTTACATTTGAGTAC 59.535 40.000 0.00 0.00 0.00 2.73
2544 2781 5.364778 TGCACACACTTACATTTGAGTACT 58.635 37.500 0.00 0.00 0.00 2.73
2545 2782 5.236263 TGCACACACTTACATTTGAGTACTG 59.764 40.000 0.00 0.00 0.00 2.74
2546 2783 5.679906 CACACACTTACATTTGAGTACTGC 58.320 41.667 0.00 0.00 0.00 4.40
2547 2784 5.466728 CACACACTTACATTTGAGTACTGCT 59.533 40.000 0.00 0.00 0.00 4.24
2548 2785 6.645003 CACACACTTACATTTGAGTACTGCTA 59.355 38.462 0.00 0.00 0.00 3.49
2549 2786 6.868864 ACACACTTACATTTGAGTACTGCTAG 59.131 38.462 0.00 0.00 0.00 3.42
2550 2787 6.868864 CACACTTACATTTGAGTACTGCTAGT 59.131 38.462 0.00 0.00 0.00 2.57
2551 2788 8.027189 CACACTTACATTTGAGTACTGCTAGTA 58.973 37.037 0.00 0.00 0.00 1.82
2552 2789 8.582437 ACACTTACATTTGAGTACTGCTAGTAA 58.418 33.333 0.00 2.58 31.62 2.24
2553 2790 8.861101 CACTTACATTTGAGTACTGCTAGTAAC 58.139 37.037 0.00 0.00 31.62 2.50
2554 2791 8.582437 ACTTACATTTGAGTACTGCTAGTAACA 58.418 33.333 0.00 0.00 31.62 2.41
2555 2792 9.419297 CTTACATTTGAGTACTGCTAGTAACAA 57.581 33.333 0.00 0.00 31.62 2.83
2556 2793 7.653767 ACATTTGAGTACTGCTAGTAACAAC 57.346 36.000 0.00 0.00 32.91 3.32
2557 2794 6.649557 ACATTTGAGTACTGCTAGTAACAACC 59.350 38.462 0.00 0.00 32.91 3.77
2558 2795 5.794726 TTGAGTACTGCTAGTAACAACCA 57.205 39.130 0.00 0.00 31.62 3.67
2559 2796 5.995565 TGAGTACTGCTAGTAACAACCAT 57.004 39.130 0.00 0.00 31.62 3.55
2560 2797 5.962433 TGAGTACTGCTAGTAACAACCATC 58.038 41.667 0.00 0.00 31.62 3.51
2561 2798 5.479027 TGAGTACTGCTAGTAACAACCATCA 59.521 40.000 0.00 0.00 31.62 3.07
2562 2799 6.014925 TGAGTACTGCTAGTAACAACCATCAA 60.015 38.462 0.00 0.00 31.62 2.57
2563 2800 6.164176 AGTACTGCTAGTAACAACCATCAAC 58.836 40.000 0.00 0.00 31.62 3.18
2564 2801 3.994392 ACTGCTAGTAACAACCATCAACG 59.006 43.478 0.00 0.00 0.00 4.10
2565 2802 4.242475 CTGCTAGTAACAACCATCAACGA 58.758 43.478 0.00 0.00 0.00 3.85
2566 2803 4.827692 TGCTAGTAACAACCATCAACGAT 58.172 39.130 0.00 0.00 0.00 3.73
2567 2804 4.868171 TGCTAGTAACAACCATCAACGATC 59.132 41.667 0.00 0.00 0.00 3.69
2568 2805 4.868171 GCTAGTAACAACCATCAACGATCA 59.132 41.667 0.00 0.00 0.00 2.92
2569 2806 5.350365 GCTAGTAACAACCATCAACGATCAA 59.650 40.000 0.00 0.00 0.00 2.57
2570 2807 6.037172 GCTAGTAACAACCATCAACGATCAAT 59.963 38.462 0.00 0.00 0.00 2.57
2571 2808 6.422776 AGTAACAACCATCAACGATCAATC 57.577 37.500 0.00 0.00 0.00 2.67
2572 2809 5.937540 AGTAACAACCATCAACGATCAATCA 59.062 36.000 0.00 0.00 0.00 2.57
2573 2810 5.902613 AACAACCATCAACGATCAATCAT 57.097 34.783 0.00 0.00 0.00 2.45
2574 2811 7.768582 AGTAACAACCATCAACGATCAATCATA 59.231 33.333 0.00 0.00 0.00 2.15
2575 2812 6.363577 ACAACCATCAACGATCAATCATAC 57.636 37.500 0.00 0.00 0.00 2.39
2576 2813 6.115446 ACAACCATCAACGATCAATCATACT 58.885 36.000 0.00 0.00 0.00 2.12
2577 2814 6.258727 ACAACCATCAACGATCAATCATACTC 59.741 38.462 0.00 0.00 0.00 2.59
2578 2815 5.300752 ACCATCAACGATCAATCATACTCC 58.699 41.667 0.00 0.00 0.00 3.85
2579 2816 4.386954 CCATCAACGATCAATCATACTCCG 59.613 45.833 0.00 0.00 0.00 4.63
2580 2817 3.977427 TCAACGATCAATCATACTCCGG 58.023 45.455 0.00 0.00 0.00 5.14
2581 2818 3.059884 CAACGATCAATCATACTCCGGG 58.940 50.000 0.00 0.00 0.00 5.73
2582 2819 2.594131 ACGATCAATCATACTCCGGGA 58.406 47.619 0.00 0.00 0.00 5.14
2583 2820 3.165875 ACGATCAATCATACTCCGGGAT 58.834 45.455 0.00 0.00 0.00 3.85
2584 2821 3.578716 ACGATCAATCATACTCCGGGATT 59.421 43.478 0.00 0.00 0.00 3.01
2585 2822 4.177026 CGATCAATCATACTCCGGGATTC 58.823 47.826 0.00 0.00 0.00 2.52
2586 2823 4.508662 GATCAATCATACTCCGGGATTCC 58.491 47.826 0.00 0.00 0.00 3.01
2587 2824 3.313791 TCAATCATACTCCGGGATTCCA 58.686 45.455 0.00 0.00 0.00 3.53
2588 2825 3.071023 TCAATCATACTCCGGGATTCCAC 59.929 47.826 0.00 0.00 0.00 4.02
2589 2826 2.471815 TCATACTCCGGGATTCCACT 57.528 50.000 0.00 0.00 0.00 4.00
2590 2827 2.039418 TCATACTCCGGGATTCCACTG 58.961 52.381 0.00 0.00 0.00 3.66
2591 2828 1.762957 CATACTCCGGGATTCCACTGT 59.237 52.381 0.00 0.62 0.00 3.55
2592 2829 1.191535 TACTCCGGGATTCCACTGTG 58.808 55.000 0.00 0.00 0.00 3.66
2593 2830 1.221840 CTCCGGGATTCCACTGTGG 59.778 63.158 20.86 20.86 39.43 4.17
2594 2831 1.229368 TCCGGGATTCCACTGTGGA 60.229 57.895 25.12 25.12 46.61 4.02
2604 2841 4.147701 ACTGTGGAAGTGCAGTGC 57.852 55.556 8.58 8.58 43.45 4.40
2605 2842 1.224315 ACTGTGGAAGTGCAGTGCA 59.776 52.632 15.37 15.37 43.45 4.57
2606 2843 0.816825 ACTGTGGAAGTGCAGTGCAG 60.817 55.000 20.42 6.62 43.45 4.41
2607 2844 1.512996 CTGTGGAAGTGCAGTGCAGG 61.513 60.000 20.42 0.00 40.08 4.85
2608 2845 2.113774 TGGAAGTGCAGTGCAGGG 59.886 61.111 20.42 0.00 40.08 4.45
2609 2846 3.368571 GGAAGTGCAGTGCAGGGC 61.369 66.667 20.42 7.12 40.08 5.19
2610 2847 2.282040 GAAGTGCAGTGCAGGGCT 60.282 61.111 20.42 9.70 40.08 5.19
2611 2848 1.003355 GAAGTGCAGTGCAGGGCTA 60.003 57.895 20.42 0.00 40.08 3.93
2612 2849 1.301677 GAAGTGCAGTGCAGGGCTAC 61.302 60.000 20.42 5.44 40.08 3.58
2613 2850 3.121030 GTGCAGTGCAGGGCTACG 61.121 66.667 20.42 0.00 40.08 3.51
2614 2851 4.393155 TGCAGTGCAGGGCTACGG 62.393 66.667 15.37 0.00 33.32 4.02
2615 2852 4.082523 GCAGTGCAGGGCTACGGA 62.083 66.667 11.09 0.00 0.00 4.69
2616 2853 2.185350 CAGTGCAGGGCTACGGAG 59.815 66.667 0.00 0.00 0.00 4.63
2617 2854 3.077556 AGTGCAGGGCTACGGAGG 61.078 66.667 0.00 0.00 0.00 4.30
2625 2862 2.442272 GCTACGGAGGCCAGGAGA 60.442 66.667 5.01 0.00 0.00 3.71
2626 2863 2.058595 GCTACGGAGGCCAGGAGAA 61.059 63.158 5.01 0.00 0.00 2.87
2627 2864 1.817209 CTACGGAGGCCAGGAGAAC 59.183 63.158 5.01 0.00 0.00 3.01
2628 2865 2.005960 CTACGGAGGCCAGGAGAACG 62.006 65.000 5.01 0.49 0.00 3.95
2629 2866 2.776370 TACGGAGGCCAGGAGAACGT 62.776 60.000 5.01 7.04 36.93 3.99
2630 2867 2.050350 CGGAGGCCAGGAGAACGTA 61.050 63.158 5.01 0.00 0.00 3.57
2631 2868 1.516423 GGAGGCCAGGAGAACGTAC 59.484 63.158 5.01 0.00 0.00 3.67
2632 2869 1.139095 GAGGCCAGGAGAACGTACG 59.861 63.158 15.01 15.01 0.00 3.67
2633 2870 1.593296 GAGGCCAGGAGAACGTACGT 61.593 60.000 16.72 16.72 0.00 3.57
2634 2871 1.445582 GGCCAGGAGAACGTACGTG 60.446 63.158 23.57 8.52 0.00 4.49
2635 2872 1.288127 GCCAGGAGAACGTACGTGT 59.712 57.895 23.57 12.74 0.00 4.49
2636 2873 0.523072 GCCAGGAGAACGTACGTGTA 59.477 55.000 23.57 0.00 0.00 2.90
2637 2874 1.467035 GCCAGGAGAACGTACGTGTAG 60.467 57.143 23.57 8.89 0.00 2.74
2638 2875 1.131883 CCAGGAGAACGTACGTGTAGG 59.868 57.143 23.57 13.96 0.00 3.18
2639 2876 1.808945 CAGGAGAACGTACGTGTAGGT 59.191 52.381 23.57 5.27 35.90 3.08
2640 2877 1.808945 AGGAGAACGTACGTGTAGGTG 59.191 52.381 23.57 0.00 34.77 4.00
2641 2878 1.806542 GGAGAACGTACGTGTAGGTGA 59.193 52.381 23.57 0.00 34.77 4.02
2642 2879 2.413371 GGAGAACGTACGTGTAGGTGAC 60.413 54.545 23.57 7.69 34.77 3.67
2643 2880 1.195448 AGAACGTACGTGTAGGTGACG 59.805 52.381 23.57 0.00 42.62 4.35
2650 2887 2.129823 CGTGTAGGTGACGTTCTTGT 57.870 50.000 0.00 0.00 32.06 3.16
2651 2888 2.049228 CGTGTAGGTGACGTTCTTGTC 58.951 52.381 0.00 0.00 39.37 3.18
2652 2889 2.542205 CGTGTAGGTGACGTTCTTGTCA 60.542 50.000 0.00 0.00 46.15 3.58
2656 2893 4.816990 TGACGTTCTTGTCACGCA 57.183 50.000 0.00 0.00 43.62 5.24
2657 2894 2.588731 TGACGTTCTTGTCACGCAG 58.411 52.632 0.00 0.00 43.62 5.18
2658 2895 0.101579 TGACGTTCTTGTCACGCAGA 59.898 50.000 0.00 0.00 43.62 4.26
2659 2896 1.205657 GACGTTCTTGTCACGCAGAA 58.794 50.000 0.00 0.00 41.53 3.02
2660 2897 1.591158 GACGTTCTTGTCACGCAGAAA 59.409 47.619 0.00 0.00 41.53 2.52
2661 2898 1.326548 ACGTTCTTGTCACGCAGAAAC 59.673 47.619 0.00 0.00 41.53 2.78
2662 2899 1.332904 CGTTCTTGTCACGCAGAAACC 60.333 52.381 0.00 0.00 0.00 3.27
2663 2900 1.668751 GTTCTTGTCACGCAGAAACCA 59.331 47.619 0.00 0.00 0.00 3.67
2664 2901 1.581934 TCTTGTCACGCAGAAACCAG 58.418 50.000 0.00 0.00 0.00 4.00
2665 2902 1.138069 TCTTGTCACGCAGAAACCAGA 59.862 47.619 0.00 0.00 0.00 3.86
2666 2903 1.528586 CTTGTCACGCAGAAACCAGAG 59.471 52.381 0.00 0.00 0.00 3.35
2667 2904 0.880278 TGTCACGCAGAAACCAGAGC 60.880 55.000 0.00 0.00 0.00 4.09
2668 2905 0.880278 GTCACGCAGAAACCAGAGCA 60.880 55.000 0.00 0.00 0.00 4.26
2669 2906 0.601046 TCACGCAGAAACCAGAGCAG 60.601 55.000 0.00 0.00 0.00 4.24
2670 2907 1.302033 ACGCAGAAACCAGAGCAGG 60.302 57.895 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.227999 CGGTTTCTGCCGCTTTGAGA 61.228 55.000 0.00 0.00 45.47 3.27
94 95 3.189910 GGTTTCCGTTCCTGGTGTAATTC 59.810 47.826 0.00 0.00 0.00 2.17
158 159 0.107654 GTGGTGGTCATGAGGTAGGC 60.108 60.000 0.00 0.00 0.00 3.93
200 201 0.747255 AAGCTCGTGGTATCAGCGAT 59.253 50.000 0.00 0.00 38.26 4.58
202 203 1.148157 CCAAGCTCGTGGTATCAGCG 61.148 60.000 0.00 0.00 38.26 5.18
203 204 1.432270 GCCAAGCTCGTGGTATCAGC 61.432 60.000 6.32 0.00 41.12 4.26
204 205 0.176680 AGCCAAGCTCGTGGTATCAG 59.823 55.000 6.32 0.00 41.12 2.90
205 206 0.175760 GAGCCAAGCTCGTGGTATCA 59.824 55.000 6.32 0.00 45.85 2.15
285 286 3.421844 TGATTCTCCTTCGAGTGAGTGA 58.578 45.455 11.60 4.65 37.40 3.41
286 287 3.857549 TGATTCTCCTTCGAGTGAGTG 57.142 47.619 11.60 0.00 37.40 3.51
287 288 4.142049 GGAATGATTCTCCTTCGAGTGAGT 60.142 45.833 5.03 0.00 37.40 3.41
299 301 6.325596 GTTGCTTTGGTAAGGAATGATTCTC 58.674 40.000 5.03 0.00 42.56 2.87
301 303 5.047377 TGGTTGCTTTGGTAAGGAATGATTC 60.047 40.000 0.00 0.00 42.56 2.52
302 304 4.837860 TGGTTGCTTTGGTAAGGAATGATT 59.162 37.500 0.00 0.00 42.56 2.57
304 306 3.838565 TGGTTGCTTTGGTAAGGAATGA 58.161 40.909 0.00 0.00 42.56 2.57
305 307 4.806640 ATGGTTGCTTTGGTAAGGAATG 57.193 40.909 0.00 0.00 42.56 2.67
306 308 5.580022 ACTATGGTTGCTTTGGTAAGGAAT 58.420 37.500 0.00 0.00 42.56 3.01
307 309 4.993028 ACTATGGTTGCTTTGGTAAGGAA 58.007 39.130 0.00 0.00 39.09 3.36
330 332 7.960262 TGCACTATCAGATTGATTGATACTCT 58.040 34.615 7.35 0.00 38.26 3.24
331 333 8.657729 CATGCACTATCAGATTGATTGATACTC 58.342 37.037 7.35 0.00 38.26 2.59
500 506 4.060900 GAGAAATCAGCAACACACAGAGA 58.939 43.478 0.00 0.00 0.00 3.10
501 507 4.063689 AGAGAAATCAGCAACACACAGAG 58.936 43.478 0.00 0.00 0.00 3.35
502 508 3.811497 CAGAGAAATCAGCAACACACAGA 59.189 43.478 0.00 0.00 0.00 3.41
503 509 3.608707 GCAGAGAAATCAGCAACACACAG 60.609 47.826 0.00 0.00 0.00 3.66
504 510 2.291465 GCAGAGAAATCAGCAACACACA 59.709 45.455 0.00 0.00 0.00 3.72
505 511 2.551459 AGCAGAGAAATCAGCAACACAC 59.449 45.455 0.00 0.00 0.00 3.82
546 552 1.217942 AGGCTCTGGTTTCCCTTTGTT 59.782 47.619 0.00 0.00 0.00 2.83
587 593 3.056393 CCCTGACGTTGATGTACAGGTAA 60.056 47.826 14.11 0.00 44.33 2.85
588 594 2.494471 CCCTGACGTTGATGTACAGGTA 59.506 50.000 14.11 0.00 44.33 3.08
589 595 1.275291 CCCTGACGTTGATGTACAGGT 59.725 52.381 14.11 0.00 44.33 4.00
590 596 1.405526 CCCCTGACGTTGATGTACAGG 60.406 57.143 9.62 9.62 45.09 4.00
591 597 1.548719 TCCCCTGACGTTGATGTACAG 59.451 52.381 0.33 0.00 0.00 2.74
592 598 1.634960 TCCCCTGACGTTGATGTACA 58.365 50.000 0.00 0.00 0.00 2.90
593 599 2.167693 TGATCCCCTGACGTTGATGTAC 59.832 50.000 0.00 0.00 0.00 2.90
594 600 2.462723 TGATCCCCTGACGTTGATGTA 58.537 47.619 0.00 0.00 0.00 2.29
628 638 5.080337 TCTGTTCTTGTGTCTCTATCTGGT 58.920 41.667 0.00 0.00 0.00 4.00
702 722 5.594725 AGTGTGTGTGATACTATGGTCCTAG 59.405 44.000 0.00 0.00 0.00 3.02
703 723 5.516044 AGTGTGTGTGATACTATGGTCCTA 58.484 41.667 0.00 0.00 0.00 2.94
704 724 4.353777 AGTGTGTGTGATACTATGGTCCT 58.646 43.478 0.00 0.00 0.00 3.85
705 725 4.159693 TGAGTGTGTGTGATACTATGGTCC 59.840 45.833 0.00 0.00 0.00 4.46
725 745 1.164411 AGAGAGAGCGAGTGTGTGAG 58.836 55.000 0.00 0.00 0.00 3.51
726 746 1.537638 GAAGAGAGAGCGAGTGTGTGA 59.462 52.381 0.00 0.00 0.00 3.58
727 747 1.539388 AGAAGAGAGAGCGAGTGTGTG 59.461 52.381 0.00 0.00 0.00 3.82
728 748 1.904287 AGAAGAGAGAGCGAGTGTGT 58.096 50.000 0.00 0.00 0.00 3.72
729 749 2.415357 GGAAGAAGAGAGAGCGAGTGTG 60.415 54.545 0.00 0.00 0.00 3.82
730 750 1.816224 GGAAGAAGAGAGAGCGAGTGT 59.184 52.381 0.00 0.00 0.00 3.55
736 756 3.054802 TGGGATTTGGAAGAAGAGAGAGC 60.055 47.826 0.00 0.00 0.00 4.09
750 770 2.412937 GCCGGCGATTGGGATTTG 59.587 61.111 12.58 0.00 0.00 2.32
751 771 2.833121 GGCCGGCGATTGGGATTT 60.833 61.111 22.54 0.00 0.00 2.17
752 772 4.122149 TGGCCGGCGATTGGGATT 62.122 61.111 22.54 0.00 0.00 3.01
753 773 4.875713 GTGGCCGGCGATTGGGAT 62.876 66.667 22.54 0.00 0.00 3.85
756 776 3.814268 CAAGTGGCCGGCGATTGG 61.814 66.667 22.54 7.25 0.00 3.16
899 932 2.624838 CAGTTCACCACAGCCTGAATTT 59.375 45.455 0.00 0.00 0.00 1.82
980 1019 2.999485 GCTCGCTCTGGCTCACTGA 61.999 63.158 0.00 0.00 36.09 3.41
981 1020 2.508887 GCTCGCTCTGGCTCACTG 60.509 66.667 0.00 0.00 36.09 3.66
982 1021 3.768922 GGCTCGCTCTGGCTCACT 61.769 66.667 0.00 0.00 36.09 3.41
983 1022 3.382803 ATGGCTCGCTCTGGCTCAC 62.383 63.158 0.00 0.00 36.09 3.51
984 1023 3.079478 ATGGCTCGCTCTGGCTCA 61.079 61.111 0.00 0.00 36.09 4.26
985 1024 2.588314 CATGGCTCGCTCTGGCTC 60.588 66.667 0.00 0.00 36.09 4.70
986 1025 4.172512 CCATGGCTCGCTCTGGCT 62.173 66.667 0.00 0.00 36.09 4.75
1053 1092 4.077188 GACAAGAGCACGGCGCAC 62.077 66.667 10.83 0.00 46.13 5.34
1073 1112 3.594827 CGTTCGCCATCGTCGTCG 61.595 66.667 0.00 0.00 36.96 5.12
1074 1113 3.245315 CCGTTCGCCATCGTCGTC 61.245 66.667 0.00 0.00 36.96 4.20
1095 1137 0.252479 CATCAGCTGCTCCAGTCCTT 59.748 55.000 9.47 0.00 33.43 3.36
1104 1146 4.790962 CCCGTGCCATCAGCTGCT 62.791 66.667 9.47 0.00 44.23 4.24
1233 1275 3.748568 CCTTCCTCTTGCTGTTCTTGTAC 59.251 47.826 0.00 0.00 0.00 2.90
1293 1335 7.836685 AGAACTACCAGAGATGAGATGAGTAAA 59.163 37.037 0.00 0.00 0.00 2.01
1322 1364 4.383948 GCACAATTGAAGTAAGCAAGAAGC 59.616 41.667 13.59 0.00 46.19 3.86
1323 1365 5.766222 AGCACAATTGAAGTAAGCAAGAAG 58.234 37.500 13.59 0.00 0.00 2.85
1324 1366 5.560760 CGAGCACAATTGAAGTAAGCAAGAA 60.561 40.000 13.59 0.00 0.00 2.52
1325 1367 4.083855 CGAGCACAATTGAAGTAAGCAAGA 60.084 41.667 13.59 0.00 0.00 3.02
1326 1368 4.153986 CGAGCACAATTGAAGTAAGCAAG 58.846 43.478 13.59 1.51 0.00 4.01
1327 1369 3.563808 ACGAGCACAATTGAAGTAAGCAA 59.436 39.130 13.59 0.00 0.00 3.91
1328 1370 3.058983 CACGAGCACAATTGAAGTAAGCA 60.059 43.478 13.59 0.00 0.00 3.91
1329 1371 3.058914 ACACGAGCACAATTGAAGTAAGC 60.059 43.478 13.59 6.11 0.00 3.09
1333 1375 4.370364 AAAACACGAGCACAATTGAAGT 57.630 36.364 13.59 1.60 0.00 3.01
1336 1378 7.644490 AGTAATTAAAACACGAGCACAATTGA 58.356 30.769 13.59 0.00 0.00 2.57
1357 1499 8.684520 GTTAGAGGTATTGTGCTAGAGAAGTAA 58.315 37.037 0.00 0.00 0.00 2.24
1358 1500 7.832685 TGTTAGAGGTATTGTGCTAGAGAAGTA 59.167 37.037 0.00 0.00 0.00 2.24
1361 1503 7.476540 TTGTTAGAGGTATTGTGCTAGAGAA 57.523 36.000 0.00 0.00 0.00 2.87
1362 1504 7.476540 TTTGTTAGAGGTATTGTGCTAGAGA 57.523 36.000 0.00 0.00 0.00 3.10
1366 1508 9.727859 TGTAATTTTGTTAGAGGTATTGTGCTA 57.272 29.630 0.00 0.00 0.00 3.49
1367 1509 8.512138 GTGTAATTTTGTTAGAGGTATTGTGCT 58.488 33.333 0.00 0.00 0.00 4.40
1368 1510 7.753580 GGTGTAATTTTGTTAGAGGTATTGTGC 59.246 37.037 0.00 0.00 0.00 4.57
1369 1511 9.010029 AGGTGTAATTTTGTTAGAGGTATTGTG 57.990 33.333 0.00 0.00 0.00 3.33
1375 1517 9.582648 ACAATTAGGTGTAATTTTGTTAGAGGT 57.417 29.630 0.00 0.00 36.83 3.85
1390 1532 9.269453 GAGAGTTTTTACAGTACAATTAGGTGT 57.731 33.333 0.00 0.00 35.43 4.16
1391 1533 8.718734 GGAGAGTTTTTACAGTACAATTAGGTG 58.281 37.037 0.00 0.00 0.00 4.00
1392 1534 8.434392 TGGAGAGTTTTTACAGTACAATTAGGT 58.566 33.333 0.00 0.00 0.00 3.08
1393 1535 8.842358 TGGAGAGTTTTTACAGTACAATTAGG 57.158 34.615 0.00 0.00 0.00 2.69
1467 1635 4.141869 ACTGAGTATGTGCATGCTATGTGA 60.142 41.667 20.33 0.00 33.86 3.58
1470 1638 5.746307 AAACTGAGTATGTGCATGCTATG 57.254 39.130 20.33 4.11 33.86 2.23
1541 1728 1.847328 TCGAGGTAAGTCTGCATGGA 58.153 50.000 0.00 0.00 0.00 3.41
1587 1774 3.521531 TCATGGTCTTGGTTAGCCACATA 59.478 43.478 0.00 0.00 46.01 2.29
1621 1808 2.191128 TCTGGCTCTCCTGAAAAAGC 57.809 50.000 0.00 0.00 37.38 3.51
1622 1809 3.015327 CCATCTGGCTCTCCTGAAAAAG 58.985 50.000 0.00 0.00 42.50 2.27
1623 1810 2.291153 CCCATCTGGCTCTCCTGAAAAA 60.291 50.000 0.00 0.00 42.50 1.94
1624 1811 1.283029 CCCATCTGGCTCTCCTGAAAA 59.717 52.381 0.00 0.00 42.50 2.29
1688 1888 2.208431 CGAGCCTCTCAACATTGATCC 58.792 52.381 0.00 0.00 36.46 3.36
1835 2041 8.460213 TCTACCCCTCTGTATCTACTACTACTA 58.540 40.741 0.00 0.00 0.00 1.82
1836 2042 7.312181 TCTACCCCTCTGTATCTACTACTACT 58.688 42.308 0.00 0.00 0.00 2.57
1837 2043 7.310609 CCTCTACCCCTCTGTATCTACTACTAC 60.311 48.148 0.00 0.00 0.00 2.73
1838 2044 6.730038 CCTCTACCCCTCTGTATCTACTACTA 59.270 46.154 0.00 0.00 0.00 1.82
1839 2045 5.548836 CCTCTACCCCTCTGTATCTACTACT 59.451 48.000 0.00 0.00 0.00 2.57
1840 2046 5.547276 TCCTCTACCCCTCTGTATCTACTAC 59.453 48.000 0.00 0.00 0.00 2.73
1953 2159 3.829026 CCCTCCTCCAAAGAAGAAAAAGG 59.171 47.826 0.00 0.00 0.00 3.11
1998 2204 5.758296 TGTGTGAATGAGAAGTAAGTTGGAC 59.242 40.000 0.00 0.00 0.00 4.02
2006 2237 6.868864 GCTTTACTCTGTGTGAATGAGAAGTA 59.131 38.462 0.00 0.00 0.00 2.24
2015 2248 5.670485 TCTTTGAGCTTTACTCTGTGTGAA 58.330 37.500 0.00 0.00 46.41 3.18
2016 2249 5.276461 TCTTTGAGCTTTACTCTGTGTGA 57.724 39.130 0.00 0.00 46.41 3.58
2066 2303 6.884832 TCGGGAAGAATGAAAGCTAATAGAA 58.115 36.000 0.00 0.00 0.00 2.10
2067 2304 6.479972 TCGGGAAGAATGAAAGCTAATAGA 57.520 37.500 0.00 0.00 0.00 1.98
2142 2379 5.683743 GCTTATTAGAGTTGCTCACTAGTCG 59.316 44.000 0.00 0.00 35.01 4.18
2156 2393 3.736720 TGATGGCTGCAGCTTATTAGAG 58.263 45.455 35.82 0.00 41.70 2.43
2163 2400 1.304217 AGCTTGATGGCTGCAGCTT 60.304 52.632 35.82 24.36 41.43 3.74
2175 2412 8.985315 ATGATATTTTGATCCTTACAGCTTGA 57.015 30.769 0.00 0.00 0.00 3.02
2225 2462 7.406916 TGTAAATTTACATCCTGCTTCCCTTA 58.593 34.615 23.91 0.00 38.64 2.69
2230 2467 5.125417 TGGCTGTAAATTTACATCCTGCTTC 59.875 40.000 34.35 21.30 45.53 3.86
2251 2488 1.065928 GATTCATGCTGCAGCTGGC 59.934 57.895 36.61 19.95 42.66 4.85
2254 2491 1.103803 CTTGGATTCATGCTGCAGCT 58.896 50.000 36.61 20.88 42.66 4.24
2275 2512 3.127589 CACCGTACACTGTTCACAATGA 58.872 45.455 0.00 0.00 0.00 2.57
2276 2513 2.223144 CCACCGTACACTGTTCACAATG 59.777 50.000 0.00 0.00 0.00 2.82
2277 2514 2.489971 CCACCGTACACTGTTCACAAT 58.510 47.619 0.00 0.00 0.00 2.71
2278 2515 1.473610 CCCACCGTACACTGTTCACAA 60.474 52.381 0.00 0.00 0.00 3.33
2280 2517 0.105408 ACCCACCGTACACTGTTCAC 59.895 55.000 0.00 0.00 0.00 3.18
2281 2518 0.390124 GACCCACCGTACACTGTTCA 59.610 55.000 0.00 0.00 0.00 3.18
2282 2519 0.390124 TGACCCACCGTACACTGTTC 59.610 55.000 0.00 0.00 0.00 3.18
2283 2520 1.053424 ATGACCCACCGTACACTGTT 58.947 50.000 0.00 0.00 0.00 3.16
2285 2522 2.693591 AGATATGACCCACCGTACACTG 59.306 50.000 0.00 0.00 0.00 3.66
2292 2529 2.820787 GGAGTAGAGATATGACCCACCG 59.179 54.545 0.00 0.00 0.00 4.94
2294 2531 8.880991 TTTATAGGAGTAGAGATATGACCCAC 57.119 38.462 0.00 0.00 0.00 4.61
2305 2542 9.757227 CCAACTCAGATTTTTATAGGAGTAGAG 57.243 37.037 0.00 0.00 34.75 2.43
2306 2543 9.268282 ACCAACTCAGATTTTTATAGGAGTAGA 57.732 33.333 0.00 0.00 34.75 2.59
2307 2544 9.319143 CACCAACTCAGATTTTTATAGGAGTAG 57.681 37.037 0.00 0.00 34.75 2.57
2308 2545 9.042450 TCACCAACTCAGATTTTTATAGGAGTA 57.958 33.333 0.00 0.00 34.75 2.59
2309 2546 7.918076 TCACCAACTCAGATTTTTATAGGAGT 58.082 34.615 0.00 0.00 37.21 3.85
2310 2547 8.834465 CATCACCAACTCAGATTTTTATAGGAG 58.166 37.037 0.00 0.00 0.00 3.69
2311 2548 8.548025 TCATCACCAACTCAGATTTTTATAGGA 58.452 33.333 0.00 0.00 0.00 2.94
2312 2549 8.737168 TCATCACCAACTCAGATTTTTATAGG 57.263 34.615 0.00 0.00 0.00 2.57
2314 2551 9.123902 CCATCATCACCAACTCAGATTTTTATA 57.876 33.333 0.00 0.00 0.00 0.98
2315 2552 7.616935 ACCATCATCACCAACTCAGATTTTTAT 59.383 33.333 0.00 0.00 0.00 1.40
2316 2553 6.947733 ACCATCATCACCAACTCAGATTTTTA 59.052 34.615 0.00 0.00 0.00 1.52
2317 2554 5.776716 ACCATCATCACCAACTCAGATTTTT 59.223 36.000 0.00 0.00 0.00 1.94
2318 2555 5.184479 CACCATCATCACCAACTCAGATTTT 59.816 40.000 0.00 0.00 0.00 1.82
2319 2556 4.703575 CACCATCATCACCAACTCAGATTT 59.296 41.667 0.00 0.00 0.00 2.17
2320 2557 4.263639 ACACCATCATCACCAACTCAGATT 60.264 41.667 0.00 0.00 0.00 2.40
2321 2558 3.265221 ACACCATCATCACCAACTCAGAT 59.735 43.478 0.00 0.00 0.00 2.90
2322 2559 2.639347 ACACCATCATCACCAACTCAGA 59.361 45.455 0.00 0.00 0.00 3.27
2323 2560 2.745821 CACACCATCATCACCAACTCAG 59.254 50.000 0.00 0.00 0.00 3.35
2324 2561 2.781923 CACACCATCATCACCAACTCA 58.218 47.619 0.00 0.00 0.00 3.41
2325 2562 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
2326 2563 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
2327 2564 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
2328 2565 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
2329 2566 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
2330 2567 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
2331 2568 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
2332 2569 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
2333 2570 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
2334 2571 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
2335 2572 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
2338 2575 0.181114 GATAGATGGCAGGCACACCA 59.819 55.000 0.00 0.00 41.01 4.17
2339 2576 0.181114 TGATAGATGGCAGGCACACC 59.819 55.000 0.00 0.00 0.00 4.16
2340 2577 1.303309 GTGATAGATGGCAGGCACAC 58.697 55.000 0.00 0.00 0.00 3.82
2341 2578 0.181114 GGTGATAGATGGCAGGCACA 59.819 55.000 0.00 0.00 0.00 4.57
2342 2579 0.181114 TGGTGATAGATGGCAGGCAC 59.819 55.000 0.00 0.00 0.00 5.01
2343 2580 0.918258 TTGGTGATAGATGGCAGGCA 59.082 50.000 0.00 0.00 0.00 4.75
2344 2581 2.283145 ATTGGTGATAGATGGCAGGC 57.717 50.000 0.00 0.00 0.00 4.85
2345 2582 2.295349 GCAATTGGTGATAGATGGCAGG 59.705 50.000 7.72 0.00 0.00 4.85
2346 2583 2.295349 GGCAATTGGTGATAGATGGCAG 59.705 50.000 7.72 0.00 33.98 4.85
2347 2584 2.309613 GGCAATTGGTGATAGATGGCA 58.690 47.619 7.72 0.00 33.98 4.92
2348 2585 1.267806 CGGCAATTGGTGATAGATGGC 59.732 52.381 7.72 0.00 0.00 4.40
2349 2586 2.549754 GACGGCAATTGGTGATAGATGG 59.450 50.000 7.72 0.00 0.00 3.51
2350 2587 2.221749 CGACGGCAATTGGTGATAGATG 59.778 50.000 7.72 0.00 0.00 2.90
2351 2588 2.483876 CGACGGCAATTGGTGATAGAT 58.516 47.619 7.72 0.00 0.00 1.98
2352 2589 1.472552 CCGACGGCAATTGGTGATAGA 60.473 52.381 7.72 0.00 0.00 1.98
2353 2590 0.937304 CCGACGGCAATTGGTGATAG 59.063 55.000 7.72 0.00 0.00 2.08
2354 2591 0.537653 TCCGACGGCAATTGGTGATA 59.462 50.000 9.66 0.00 0.00 2.15
2355 2592 0.107214 ATCCGACGGCAATTGGTGAT 60.107 50.000 9.66 0.00 0.00 3.06
2356 2593 0.742990 GATCCGACGGCAATTGGTGA 60.743 55.000 9.66 0.00 0.00 4.02
2357 2594 0.744414 AGATCCGACGGCAATTGGTG 60.744 55.000 9.66 0.00 0.00 4.17
2358 2595 0.744414 CAGATCCGACGGCAATTGGT 60.744 55.000 9.66 0.00 0.00 3.67
2359 2596 0.461870 TCAGATCCGACGGCAATTGG 60.462 55.000 9.66 0.00 0.00 3.16
2360 2597 1.368641 TTCAGATCCGACGGCAATTG 58.631 50.000 9.66 0.00 0.00 2.32
2361 2598 2.332063 ATTCAGATCCGACGGCAATT 57.668 45.000 9.66 0.00 0.00 2.32
2362 2599 2.332063 AATTCAGATCCGACGGCAAT 57.668 45.000 9.66 0.00 0.00 3.56
2363 2600 1.737236 CAAATTCAGATCCGACGGCAA 59.263 47.619 9.66 0.00 0.00 4.52
2364 2601 1.066502 TCAAATTCAGATCCGACGGCA 60.067 47.619 9.66 0.00 0.00 5.69
2365 2602 1.327764 GTCAAATTCAGATCCGACGGC 59.672 52.381 9.66 0.00 0.00 5.68
2366 2603 1.588404 CGTCAAATTCAGATCCGACGG 59.412 52.381 7.84 7.84 41.75 4.79
2367 2604 1.005975 GCGTCAAATTCAGATCCGACG 60.006 52.381 0.00 0.00 46.59 5.12
2368 2605 1.999735 TGCGTCAAATTCAGATCCGAC 59.000 47.619 0.00 0.00 0.00 4.79
2369 2606 2.378445 TGCGTCAAATTCAGATCCGA 57.622 45.000 0.00 0.00 0.00 4.55
2370 2607 3.555547 TGTATGCGTCAAATTCAGATCCG 59.444 43.478 0.00 0.00 0.00 4.18
2371 2608 5.484173 TTGTATGCGTCAAATTCAGATCC 57.516 39.130 0.00 0.00 0.00 3.36
2372 2609 5.453587 GCTTTGTATGCGTCAAATTCAGATC 59.546 40.000 4.66 0.00 34.88 2.75
2373 2610 5.106197 TGCTTTGTATGCGTCAAATTCAGAT 60.106 36.000 4.66 0.00 34.88 2.90
2374 2611 4.215185 TGCTTTGTATGCGTCAAATTCAGA 59.785 37.500 4.66 0.00 34.88 3.27
2375 2612 4.475028 TGCTTTGTATGCGTCAAATTCAG 58.525 39.130 4.66 0.00 34.88 3.02
2376 2613 4.495911 TGCTTTGTATGCGTCAAATTCA 57.504 36.364 4.66 4.22 34.88 2.57
2377 2614 5.402270 AGTTTGCTTTGTATGCGTCAAATTC 59.598 36.000 4.66 2.40 34.88 2.17
2378 2615 5.175491 CAGTTTGCTTTGTATGCGTCAAATT 59.825 36.000 4.66 0.00 34.88 1.82
2379 2616 4.681025 CAGTTTGCTTTGTATGCGTCAAAT 59.319 37.500 4.66 0.00 34.88 2.32
2380 2617 4.041049 CAGTTTGCTTTGTATGCGTCAAA 58.959 39.130 0.00 0.00 34.34 2.69
2381 2618 3.066064 ACAGTTTGCTTTGTATGCGTCAA 59.934 39.130 0.00 0.00 0.00 3.18
2382 2619 2.616376 ACAGTTTGCTTTGTATGCGTCA 59.384 40.909 0.00 0.00 0.00 4.35
2383 2620 3.268013 ACAGTTTGCTTTGTATGCGTC 57.732 42.857 0.00 0.00 0.00 5.19
2384 2621 3.371168 CAACAGTTTGCTTTGTATGCGT 58.629 40.909 0.00 0.00 0.00 5.24
2404 2641 2.677337 GCCTTTTTCTTGCAAAACTGCA 59.323 40.909 0.00 0.00 43.81 4.41
2405 2642 2.032054 GGCCTTTTTCTTGCAAAACTGC 59.968 45.455 0.00 0.00 0.00 4.40
2406 2643 2.284952 CGGCCTTTTTCTTGCAAAACTG 59.715 45.455 0.00 0.00 0.00 3.16
2407 2644 2.549926 CGGCCTTTTTCTTGCAAAACT 58.450 42.857 0.00 0.00 0.00 2.66
2408 2645 1.003972 GCGGCCTTTTTCTTGCAAAAC 60.004 47.619 0.00 0.00 0.00 2.43
2409 2646 1.294857 GCGGCCTTTTTCTTGCAAAA 58.705 45.000 0.00 0.00 0.00 2.44
2410 2647 0.176680 TGCGGCCTTTTTCTTGCAAA 59.823 45.000 0.00 0.00 0.00 3.68
2411 2648 0.529555 GTGCGGCCTTTTTCTTGCAA 60.530 50.000 0.00 0.00 33.67 4.08
2412 2649 1.067250 GTGCGGCCTTTTTCTTGCA 59.933 52.632 0.00 0.00 0.00 4.08
2413 2650 0.249447 AAGTGCGGCCTTTTTCTTGC 60.249 50.000 0.00 0.00 0.00 4.01
2414 2651 1.202405 ACAAGTGCGGCCTTTTTCTTG 60.202 47.619 0.00 10.74 38.40 3.02
2415 2652 1.111277 ACAAGTGCGGCCTTTTTCTT 58.889 45.000 0.00 0.00 0.00 2.52
2416 2653 1.111277 AACAAGTGCGGCCTTTTTCT 58.889 45.000 0.00 0.00 0.00 2.52
2417 2654 1.858458 GAAACAAGTGCGGCCTTTTTC 59.142 47.619 0.00 9.29 0.00 2.29
2418 2655 1.472552 GGAAACAAGTGCGGCCTTTTT 60.473 47.619 0.00 4.78 0.00 1.94
2419 2656 0.104120 GGAAACAAGTGCGGCCTTTT 59.896 50.000 0.00 0.00 0.00 2.27
2420 2657 1.040339 TGGAAACAAGTGCGGCCTTT 61.040 50.000 0.00 0.00 37.44 3.11
2421 2658 1.454847 TGGAAACAAGTGCGGCCTT 60.455 52.632 0.00 0.00 37.44 4.35
2422 2659 2.194597 TGGAAACAAGTGCGGCCT 59.805 55.556 0.00 0.00 37.44 5.19
2427 2664 8.272866 GTTGTTTGTAAATATGGAAACAAGTGC 58.727 33.333 0.00 0.00 44.64 4.40
2428 2665 9.528018 AGTTGTTTGTAAATATGGAAACAAGTG 57.472 29.630 13.14 0.00 44.46 3.16
2429 2666 9.744468 GAGTTGTTTGTAAATATGGAAACAAGT 57.256 29.630 13.59 13.59 46.83 3.16
2430 2667 9.191995 GGAGTTGTTTGTAAATATGGAAACAAG 57.808 33.333 0.00 0.00 44.64 3.16
2433 2670 9.191995 CAAGGAGTTGTTTGTAAATATGGAAAC 57.808 33.333 0.00 0.00 0.00 2.78
2434 2671 8.919145 ACAAGGAGTTGTTTGTAAATATGGAAA 58.081 29.630 0.00 0.00 45.00 3.13
2435 2672 8.472007 ACAAGGAGTTGTTTGTAAATATGGAA 57.528 30.769 0.00 0.00 45.00 3.53
2453 2690 8.867474 TGGGAACAATTGTGAGAGACAAGGAG 62.867 46.154 12.82 0.00 41.39 3.69
2454 2691 7.160134 TGGGAACAATTGTGAGAGACAAGGA 62.160 44.000 12.82 0.00 41.39 3.36
2455 2692 4.987926 TGGGAACAATTGTGAGAGACAAGG 60.988 45.833 12.82 0.00 41.39 3.61
2456 2693 4.023707 GTGGGAACAATTGTGAGAGACAAG 60.024 45.833 12.82 0.00 46.06 3.16
2457 2694 3.882888 GTGGGAACAATTGTGAGAGACAA 59.117 43.478 12.82 0.00 46.06 3.18
2458 2695 3.136443 AGTGGGAACAATTGTGAGAGACA 59.864 43.478 12.82 3.44 46.06 3.41
2459 2696 3.744660 AGTGGGAACAATTGTGAGAGAC 58.255 45.455 12.82 5.94 46.06 3.36
2460 2697 3.244561 GGAGTGGGAACAATTGTGAGAGA 60.245 47.826 12.82 0.00 46.06 3.10
2461 2698 3.077359 GGAGTGGGAACAATTGTGAGAG 58.923 50.000 12.82 0.00 46.06 3.20
2462 2699 2.224769 GGGAGTGGGAACAATTGTGAGA 60.225 50.000 12.82 0.00 46.06 3.27
2463 2700 2.162681 GGGAGTGGGAACAATTGTGAG 58.837 52.381 12.82 0.00 46.06 3.51
2464 2701 1.496857 TGGGAGTGGGAACAATTGTGA 59.503 47.619 12.82 0.00 46.06 3.58
2465 2702 1.613437 GTGGGAGTGGGAACAATTGTG 59.387 52.381 12.82 0.00 46.06 3.33
2466 2703 1.480498 GGTGGGAGTGGGAACAATTGT 60.480 52.381 4.92 4.92 46.06 2.71
2467 2704 1.256812 GGTGGGAGTGGGAACAATTG 58.743 55.000 3.24 3.24 46.06 2.32
2468 2705 0.856982 TGGTGGGAGTGGGAACAATT 59.143 50.000 0.00 0.00 46.06 2.32
2469 2706 0.112412 GTGGTGGGAGTGGGAACAAT 59.888 55.000 0.00 0.00 46.06 2.71
2470 2707 1.282653 TGTGGTGGGAGTGGGAACAA 61.283 55.000 0.00 0.00 46.06 2.83
2471 2708 1.282653 TTGTGGTGGGAGTGGGAACA 61.283 55.000 0.00 0.00 38.70 3.18
2472 2709 0.112412 ATTGTGGTGGGAGTGGGAAC 59.888 55.000 0.00 0.00 0.00 3.62
2473 2710 1.748732 TATTGTGGTGGGAGTGGGAA 58.251 50.000 0.00 0.00 0.00 3.97
2474 2711 1.979809 ATATTGTGGTGGGAGTGGGA 58.020 50.000 0.00 0.00 0.00 4.37
2475 2712 2.487265 GCTATATTGTGGTGGGAGTGGG 60.487 54.545 0.00 0.00 0.00 4.61
2476 2713 2.439507 AGCTATATTGTGGTGGGAGTGG 59.560 50.000 0.00 0.00 0.00 4.00
2477 2714 3.845781 AGCTATATTGTGGTGGGAGTG 57.154 47.619 0.00 0.00 0.00 3.51
2478 2715 4.862641 AAAGCTATATTGTGGTGGGAGT 57.137 40.909 0.00 0.00 0.00 3.85
2479 2716 6.772716 ACATTAAAGCTATATTGTGGTGGGAG 59.227 38.462 0.00 0.00 0.00 4.30
2480 2717 6.545666 CACATTAAAGCTATATTGTGGTGGGA 59.454 38.462 10.38 0.00 35.24 4.37
2481 2718 6.545666 TCACATTAAAGCTATATTGTGGTGGG 59.454 38.462 15.55 0.00 37.57 4.61
2482 2719 7.283127 AGTCACATTAAAGCTATATTGTGGTGG 59.717 37.037 15.55 0.00 37.57 4.61
2483 2720 8.124823 CAGTCACATTAAAGCTATATTGTGGTG 58.875 37.037 15.55 11.35 37.57 4.17
2484 2721 8.046708 TCAGTCACATTAAAGCTATATTGTGGT 58.953 33.333 15.55 5.42 37.57 4.16
2485 2722 8.338259 GTCAGTCACATTAAAGCTATATTGTGG 58.662 37.037 15.55 4.90 37.57 4.17
2486 2723 8.338259 GGTCAGTCACATTAAAGCTATATTGTG 58.662 37.037 11.50 11.50 37.99 3.33
2487 2724 7.499232 GGGTCAGTCACATTAAAGCTATATTGT 59.501 37.037 0.00 0.00 0.00 2.71
2488 2725 7.498900 TGGGTCAGTCACATTAAAGCTATATTG 59.501 37.037 0.00 0.00 0.00 1.90
2489 2726 7.573710 TGGGTCAGTCACATTAAAGCTATATT 58.426 34.615 0.00 0.00 0.00 1.28
2490 2727 7.136822 TGGGTCAGTCACATTAAAGCTATAT 57.863 36.000 0.00 0.00 0.00 0.86
2491 2728 6.553953 TGGGTCAGTCACATTAAAGCTATA 57.446 37.500 0.00 0.00 0.00 1.31
2492 2729 5.435686 TGGGTCAGTCACATTAAAGCTAT 57.564 39.130 0.00 0.00 0.00 2.97
2493 2730 4.901197 TGGGTCAGTCACATTAAAGCTA 57.099 40.909 0.00 0.00 0.00 3.32
2494 2731 3.788227 TGGGTCAGTCACATTAAAGCT 57.212 42.857 0.00 0.00 0.00 3.74
2495 2732 3.366374 GCTTGGGTCAGTCACATTAAAGC 60.366 47.826 0.00 0.00 0.00 3.51
2496 2733 3.191371 GGCTTGGGTCAGTCACATTAAAG 59.809 47.826 0.00 0.00 0.00 1.85
2497 2734 3.153919 GGCTTGGGTCAGTCACATTAAA 58.846 45.455 0.00 0.00 0.00 1.52
2498 2735 2.375174 AGGCTTGGGTCAGTCACATTAA 59.625 45.455 0.00 0.00 0.00 1.40
2499 2736 1.985159 AGGCTTGGGTCAGTCACATTA 59.015 47.619 0.00 0.00 0.00 1.90
2500 2737 0.773644 AGGCTTGGGTCAGTCACATT 59.226 50.000 0.00 0.00 0.00 2.71
2501 2738 0.326264 GAGGCTTGGGTCAGTCACAT 59.674 55.000 0.00 0.00 0.00 3.21
2502 2739 0.764369 AGAGGCTTGGGTCAGTCACA 60.764 55.000 0.00 0.00 0.00 3.58
2503 2740 0.321122 CAGAGGCTTGGGTCAGTCAC 60.321 60.000 0.00 0.00 0.00 3.67
2504 2741 2.061220 CAGAGGCTTGGGTCAGTCA 58.939 57.895 0.00 0.00 0.00 3.41
2505 2742 1.376553 GCAGAGGCTTGGGTCAGTC 60.377 63.158 0.00 0.00 36.96 3.51
2506 2743 2.149383 TGCAGAGGCTTGGGTCAGT 61.149 57.895 0.00 0.00 41.91 3.41
2507 2744 1.673665 GTGCAGAGGCTTGGGTCAG 60.674 63.158 0.00 0.00 41.91 3.51
2508 2745 2.431683 GTGCAGAGGCTTGGGTCA 59.568 61.111 0.00 0.00 41.91 4.02
2509 2746 1.968540 GTGTGCAGAGGCTTGGGTC 60.969 63.158 0.00 0.00 41.91 4.46
2510 2747 2.113986 GTGTGCAGAGGCTTGGGT 59.886 61.111 0.00 0.00 41.91 4.51
2511 2748 2.113774 TGTGTGCAGAGGCTTGGG 59.886 61.111 0.00 0.00 41.91 4.12
2512 2749 0.820891 AAGTGTGTGCAGAGGCTTGG 60.821 55.000 0.00 0.00 41.91 3.61
2513 2750 1.532868 GTAAGTGTGTGCAGAGGCTTG 59.467 52.381 9.26 0.00 41.91 4.01
2514 2751 1.140852 TGTAAGTGTGTGCAGAGGCTT 59.859 47.619 0.00 0.00 41.91 4.35
2515 2752 0.758734 TGTAAGTGTGTGCAGAGGCT 59.241 50.000 0.00 0.00 41.91 4.58
2516 2753 1.813513 ATGTAAGTGTGTGCAGAGGC 58.186 50.000 0.00 0.00 41.68 4.70
2517 2754 3.814842 TCAAATGTAAGTGTGTGCAGAGG 59.185 43.478 0.00 0.00 0.00 3.69
2518 2755 4.512944 ACTCAAATGTAAGTGTGTGCAGAG 59.487 41.667 0.00 0.00 0.00 3.35
2519 2756 4.450976 ACTCAAATGTAAGTGTGTGCAGA 58.549 39.130 0.00 0.00 0.00 4.26
2520 2757 4.818534 ACTCAAATGTAAGTGTGTGCAG 57.181 40.909 0.00 0.00 0.00 4.41
2521 2758 5.236263 CAGTACTCAAATGTAAGTGTGTGCA 59.764 40.000 0.00 0.00 0.00 4.57
2522 2759 5.679906 CAGTACTCAAATGTAAGTGTGTGC 58.320 41.667 0.00 0.00 0.00 4.57
2523 2760 5.466728 AGCAGTACTCAAATGTAAGTGTGTG 59.533 40.000 0.00 0.00 0.00 3.82
2524 2761 5.611374 AGCAGTACTCAAATGTAAGTGTGT 58.389 37.500 0.00 0.00 0.00 3.72
2525 2762 6.868864 ACTAGCAGTACTCAAATGTAAGTGTG 59.131 38.462 0.00 0.00 0.00 3.82
2526 2763 6.994221 ACTAGCAGTACTCAAATGTAAGTGT 58.006 36.000 0.00 0.00 0.00 3.55
2527 2764 8.861101 GTTACTAGCAGTACTCAAATGTAAGTG 58.139 37.037 0.00 0.00 28.93 3.16
2528 2765 8.582437 TGTTACTAGCAGTACTCAAATGTAAGT 58.418 33.333 0.00 0.00 28.93 2.24
2529 2766 8.981724 TGTTACTAGCAGTACTCAAATGTAAG 57.018 34.615 0.00 0.00 28.93 2.34
2530 2767 9.199982 GTTGTTACTAGCAGTACTCAAATGTAA 57.800 33.333 0.00 0.00 31.56 2.41
2531 2768 7.816031 GGTTGTTACTAGCAGTACTCAAATGTA 59.184 37.037 0.00 0.00 31.56 2.29
2532 2769 6.649557 GGTTGTTACTAGCAGTACTCAAATGT 59.350 38.462 0.00 0.00 31.56 2.71
2533 2770 6.649141 TGGTTGTTACTAGCAGTACTCAAATG 59.351 38.462 0.00 0.00 31.56 2.32
2534 2771 6.765403 TGGTTGTTACTAGCAGTACTCAAAT 58.235 36.000 0.00 0.00 31.56 2.32
2535 2772 6.164417 TGGTTGTTACTAGCAGTACTCAAA 57.836 37.500 0.00 0.00 31.56 2.69
2536 2773 5.794726 TGGTTGTTACTAGCAGTACTCAA 57.205 39.130 0.00 0.00 28.93 3.02
2537 2774 5.479027 TGATGGTTGTTACTAGCAGTACTCA 59.521 40.000 4.96 1.29 28.93 3.41
2538 2775 5.962433 TGATGGTTGTTACTAGCAGTACTC 58.038 41.667 4.96 0.00 28.93 2.59
2539 2776 5.995565 TGATGGTTGTTACTAGCAGTACT 57.004 39.130 4.96 0.00 28.93 2.73
2540 2777 5.061808 CGTTGATGGTTGTTACTAGCAGTAC 59.938 44.000 4.96 2.53 32.62 2.73
2541 2778 5.047872 TCGTTGATGGTTGTTACTAGCAGTA 60.048 40.000 4.96 0.00 32.62 2.74
2542 2779 3.994392 CGTTGATGGTTGTTACTAGCAGT 59.006 43.478 4.96 0.00 32.62 4.40
2543 2780 4.242475 TCGTTGATGGTTGTTACTAGCAG 58.758 43.478 4.96 0.00 32.62 4.24
2544 2781 4.260139 TCGTTGATGGTTGTTACTAGCA 57.740 40.909 0.95 0.95 28.70 3.49
2545 2782 4.868171 TGATCGTTGATGGTTGTTACTAGC 59.132 41.667 0.00 0.00 0.00 3.42
2546 2783 6.961359 TTGATCGTTGATGGTTGTTACTAG 57.039 37.500 0.00 0.00 0.00 2.57
2547 2784 7.100409 TGATTGATCGTTGATGGTTGTTACTA 58.900 34.615 0.00 0.00 0.00 1.82
2548 2785 5.937540 TGATTGATCGTTGATGGTTGTTACT 59.062 36.000 0.00 0.00 0.00 2.24
2549 2786 6.176975 TGATTGATCGTTGATGGTTGTTAC 57.823 37.500 0.00 0.00 0.00 2.50
2550 2787 7.768582 AGTATGATTGATCGTTGATGGTTGTTA 59.231 33.333 0.00 0.00 0.00 2.41
2551 2788 5.902613 ATGATTGATCGTTGATGGTTGTT 57.097 34.783 0.00 0.00 0.00 2.83
2552 2789 6.115446 AGTATGATTGATCGTTGATGGTTGT 58.885 36.000 0.00 0.00 0.00 3.32
2553 2790 6.293081 GGAGTATGATTGATCGTTGATGGTTG 60.293 42.308 0.00 0.00 0.00 3.77
2554 2791 5.760253 GGAGTATGATTGATCGTTGATGGTT 59.240 40.000 0.00 0.00 0.00 3.67
2555 2792 5.300752 GGAGTATGATTGATCGTTGATGGT 58.699 41.667 0.00 0.00 0.00 3.55
2556 2793 4.386954 CGGAGTATGATTGATCGTTGATGG 59.613 45.833 0.00 0.00 0.00 3.51
2557 2794 4.386954 CCGGAGTATGATTGATCGTTGATG 59.613 45.833 0.00 0.00 0.00 3.07
2558 2795 4.560128 CCGGAGTATGATTGATCGTTGAT 58.440 43.478 0.00 0.00 0.00 2.57
2559 2796 3.243737 CCCGGAGTATGATTGATCGTTGA 60.244 47.826 0.73 0.00 0.00 3.18
2560 2797 3.059884 CCCGGAGTATGATTGATCGTTG 58.940 50.000 0.73 0.00 0.00 4.10
2561 2798 2.963101 TCCCGGAGTATGATTGATCGTT 59.037 45.455 0.73 0.00 0.00 3.85
2562 2799 2.594131 TCCCGGAGTATGATTGATCGT 58.406 47.619 0.73 0.00 0.00 3.73
2563 2800 3.876274 ATCCCGGAGTATGATTGATCG 57.124 47.619 0.73 0.00 0.00 3.69
2564 2801 4.020218 TGGAATCCCGGAGTATGATTGATC 60.020 45.833 0.73 0.00 34.29 2.92
2565 2802 3.909995 TGGAATCCCGGAGTATGATTGAT 59.090 43.478 0.73 0.00 34.29 2.57
2566 2803 3.071023 GTGGAATCCCGGAGTATGATTGA 59.929 47.826 0.73 0.00 34.29 2.57
2567 2804 3.071602 AGTGGAATCCCGGAGTATGATTG 59.928 47.826 0.73 0.00 34.29 2.67
2568 2805 3.071602 CAGTGGAATCCCGGAGTATGATT 59.928 47.826 0.73 2.13 34.29 2.57
2569 2806 2.634940 CAGTGGAATCCCGGAGTATGAT 59.365 50.000 0.73 0.00 34.29 2.45
2570 2807 2.039418 CAGTGGAATCCCGGAGTATGA 58.961 52.381 0.73 0.00 34.29 2.15
2571 2808 1.762957 ACAGTGGAATCCCGGAGTATG 59.237 52.381 0.73 0.00 34.29 2.39
2572 2809 1.762957 CACAGTGGAATCCCGGAGTAT 59.237 52.381 0.73 0.00 34.29 2.12
2573 2810 1.191535 CACAGTGGAATCCCGGAGTA 58.808 55.000 0.73 0.00 34.29 2.59
2574 2811 1.553690 CCACAGTGGAATCCCGGAGT 61.554 60.000 15.35 0.00 40.96 3.85
2575 2812 1.221840 CCACAGTGGAATCCCGGAG 59.778 63.158 15.35 0.00 40.96 4.63
2576 2813 1.229368 TCCACAGTGGAATCCCGGA 60.229 57.895 20.84 0.00 45.00 5.14
2577 2814 3.399046 TCCACAGTGGAATCCCGG 58.601 61.111 20.84 0.00 45.00 5.73
2588 2825 1.512996 CCTGCACTGCACTTCCACAG 61.513 60.000 0.00 0.00 39.86 3.66
2589 2826 1.526686 CCTGCACTGCACTTCCACA 60.527 57.895 0.00 0.00 33.79 4.17
2590 2827 2.263741 CCCTGCACTGCACTTCCAC 61.264 63.158 0.00 0.00 33.79 4.02
2591 2828 2.113774 CCCTGCACTGCACTTCCA 59.886 61.111 0.00 0.00 33.79 3.53
2592 2829 2.469465 TAGCCCTGCACTGCACTTCC 62.469 60.000 0.00 0.00 33.79 3.46
2593 2830 1.003355 TAGCCCTGCACTGCACTTC 60.003 57.895 0.00 0.00 33.79 3.01
2594 2831 1.302832 GTAGCCCTGCACTGCACTT 60.303 57.895 0.00 0.00 33.79 3.16
2595 2832 2.348998 GTAGCCCTGCACTGCACT 59.651 61.111 0.00 0.00 33.79 4.40
2596 2833 3.121030 CGTAGCCCTGCACTGCAC 61.121 66.667 0.00 0.00 33.79 4.57
2597 2834 4.393155 CCGTAGCCCTGCACTGCA 62.393 66.667 3.11 3.11 36.92 4.41
2598 2835 4.082523 TCCGTAGCCCTGCACTGC 62.083 66.667 0.00 0.00 0.00 4.40
2599 2836 2.185350 CTCCGTAGCCCTGCACTG 59.815 66.667 0.00 0.00 0.00 3.66
2600 2837 3.077556 CCTCCGTAGCCCTGCACT 61.078 66.667 0.00 0.00 0.00 4.40
2601 2838 4.840005 GCCTCCGTAGCCCTGCAC 62.840 72.222 0.00 0.00 0.00 4.57
2608 2845 2.058595 TTCTCCTGGCCTCCGTAGC 61.059 63.158 3.32 0.00 0.00 3.58
2609 2846 1.817209 GTTCTCCTGGCCTCCGTAG 59.183 63.158 3.32 0.00 0.00 3.51
2610 2847 2.050350 CGTTCTCCTGGCCTCCGTA 61.050 63.158 3.32 0.00 0.00 4.02
2611 2848 2.776370 TACGTTCTCCTGGCCTCCGT 62.776 60.000 3.32 4.31 0.00 4.69
2612 2849 2.050350 TACGTTCTCCTGGCCTCCG 61.050 63.158 3.32 0.00 0.00 4.63
2613 2850 1.516423 GTACGTTCTCCTGGCCTCC 59.484 63.158 3.32 0.00 0.00 4.30
2614 2851 1.139095 CGTACGTTCTCCTGGCCTC 59.861 63.158 7.22 0.00 0.00 4.70
2615 2852 1.605738 ACGTACGTTCTCCTGGCCT 60.606 57.895 16.72 0.00 0.00 5.19
2616 2853 1.445582 CACGTACGTTCTCCTGGCC 60.446 63.158 20.23 0.00 0.00 5.36
2617 2854 0.523072 TACACGTACGTTCTCCTGGC 59.477 55.000 20.23 0.00 0.00 4.85
2618 2855 1.131883 CCTACACGTACGTTCTCCTGG 59.868 57.143 20.23 8.19 0.00 4.45
2619 2856 1.808945 ACCTACACGTACGTTCTCCTG 59.191 52.381 20.23 9.04 0.00 3.86
2620 2857 1.808945 CACCTACACGTACGTTCTCCT 59.191 52.381 20.23 0.00 0.00 3.69
2621 2858 1.806542 TCACCTACACGTACGTTCTCC 59.193 52.381 20.23 0.00 0.00 3.71
2622 2859 2.723010 CGTCACCTACACGTACGTTCTC 60.723 54.545 20.23 2.99 32.41 2.87
2623 2860 1.195448 CGTCACCTACACGTACGTTCT 59.805 52.381 20.23 9.42 32.41 3.01
2624 2861 1.595609 CGTCACCTACACGTACGTTC 58.404 55.000 20.23 1.46 32.41 3.95
2625 2862 3.753774 CGTCACCTACACGTACGTT 57.246 52.632 20.23 12.76 32.41 3.99
2631 2868 2.049228 GACAAGAACGTCACCTACACG 58.951 52.381 0.00 0.00 43.13 4.49
2632 2869 3.088194 TGACAAGAACGTCACCTACAC 57.912 47.619 0.00 0.00 40.94 2.90
2639 2876 0.101579 TCTGCGTGACAAGAACGTCA 59.898 50.000 0.00 0.00 43.54 4.35
2640 2877 1.205657 TTCTGCGTGACAAGAACGTC 58.794 50.000 0.00 0.00 42.93 4.34
2641 2878 1.326548 GTTTCTGCGTGACAAGAACGT 59.673 47.619 0.00 0.00 42.93 3.99
2642 2879 1.332904 GGTTTCTGCGTGACAAGAACG 60.333 52.381 0.00 0.00 43.81 3.95
2643 2880 1.668751 TGGTTTCTGCGTGACAAGAAC 59.331 47.619 0.00 0.00 0.00 3.01
2644 2881 1.939934 CTGGTTTCTGCGTGACAAGAA 59.060 47.619 0.00 0.00 0.00 2.52
2645 2882 1.138069 TCTGGTTTCTGCGTGACAAGA 59.862 47.619 0.00 0.00 0.00 3.02
2646 2883 1.528586 CTCTGGTTTCTGCGTGACAAG 59.471 52.381 0.00 0.00 0.00 3.16
2647 2884 1.581934 CTCTGGTTTCTGCGTGACAA 58.418 50.000 0.00 0.00 0.00 3.18
2648 2885 0.880278 GCTCTGGTTTCTGCGTGACA 60.880 55.000 0.00 0.00 0.00 3.58
2649 2886 0.880278 TGCTCTGGTTTCTGCGTGAC 60.880 55.000 0.00 0.00 0.00 3.67
2650 2887 0.601046 CTGCTCTGGTTTCTGCGTGA 60.601 55.000 0.00 0.00 0.00 4.35
2651 2888 1.572085 CCTGCTCTGGTTTCTGCGTG 61.572 60.000 0.00 0.00 0.00 5.34
2652 2889 1.302033 CCTGCTCTGGTTTCTGCGT 60.302 57.895 0.00 0.00 0.00 5.24
2653 2890 3.571119 CCTGCTCTGGTTTCTGCG 58.429 61.111 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.