>input_sequence_72201
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------------------------------------------------------------------------------AT
GGGCGGCATTGCTGGTGGTAGATGCCGGATCAGTGGCCTGGCCTTGCTCGTGTGCGCCGTGCTCTTGTCCGCGACG---A
CGATGGCGAACGGCATAAGGACTGGAGCAGCTGATGGCACGGGTGCTCCTGGTCCGGCTGCTGCCGCGGCACAGGCTGCC
ACCCTAGCCGCGGCTCCTCCCGTCGCTGCCGCTGCAATGGCACCACCTTCGGAGCGAGCTGCATTGGAGGATCCGTACAA
GAACAGCAAGAGGAAGGTGCCGAACGGGCCCGATCCGATTCACAATAGGTATTGTTTACTCATCTCATCTCTGGTAGTTC
TTGGCTTCTTGCTTACTTCAATTGTGCTCGTGTTT---------------------------------------------
-------------------------------------------------------TAATTACTTCTCTAGCACAATACCT
CTAACAAAATTACACCTAATTGTACTGTAAAAACTCTCCATAC---------TACAAAGTAGACAAAAATATAACTG---
--------------CAAATGCTAATAATGCAGAATCACA---------TAGCATGCACATACTCAGTTTTTTAGATAAAA
AA---ATGGAAGGACCCTCTGGCTGGTCCCCTGCATCA-------TGTCCATGCAGACTTACCTCGATTCACCGGCTTGT
TTTGCCTCTTGTGTATGTGGCTAACCAAGACCATGATGTGTTTGCTTGCTTTTTCAGGAGAGCCAGATGGGGAGACGCAC
CGGCAAGGAGAGTGTAA---------------------------------------------------------------
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>chr4D_1_TraesCS4D01G029600
CGATGGGTCCTCTTCGATCGGGAAACCCAACTCACTTCTCAAAGCGGCAGAAACCGTAGGGCCCCGGGAGTATCACATGG
TCGCTTTCCATCCCGAATTACACCAGGAACGGAAACCCAAACCCAAAGCCGCCGGCCGGGGAAGAAGCAAAGGGAATGGC
CTACCTCATGACCACCACCTCCGGCCGGCTCCCCTGCTCGATCGCTGATACCACGAGCTTGGCTCACATCACATGTCGCC
GTCGATCGACCAAACCCATATGCGGTGGAATCATTGGAACCATACTCA-CTCACTCGAAGGAGAATCATTCCTTACCAAA
GCAACCATAGTAGAGTATCAATCAATCTGATAGTGCATGCTAAGTGGAGTAGTAGGGCCCTGCATGCATGGC----TAGA
TAATCTACTCTACCCATTTTGGAACCTCCCTGTCTTCCTCGGGCGCGCAGCTAAATTCTGCTATTTATACGTAGGCTGAT
CACGACTAGACCTGCTGTGTCTGTGTCTCTGTGTGTTGCTGATTTCTCTGCTGCTTTTTTCGAGCCAAGCAAACAAAGGG
AAACCAGAGCCTCGCCACATCTCTATCTGCTGTTACCTGTACATCAACGTCAGGGGATC----AAAGCTAAAACTACACC
AGATAGAGACACAAGAACAGATTTCCCATATATATAGATAGA----------TAGAAGACCATACTATTATCGGCAGCTA
GCTAGGACCATAGTATCACACACACTCACACACTCGCTCTCTCTTCTTCCAAATCCCAATCGCCGGCCACTTGTCACTCT
CCTCTGCTCACTGCTC-------CGAACAGAGGAGCTCCAACTCCATCACCTCCTCTTCAGCATCAGG------AGGAGG
AGGAGACGTCGTAGCGCTTGTGCCAAGCGAGCTAGCTAGCTAGGCACGAGAAAATTCAGGCTGTGGTGAACTGATCAGCG
ATCACTGGTCAGTCACCTGATCTAGC----AGCCGGCAG-AAGCAAG-AGAAGTCCAGTCAGTGAGCCAGAGCGAGCCAT
GGGCGGCATTGCTGGTGGTAGATGCCGGATCAGTGGCCTGGCCTTGCTCGTGTGCGCCGTGCTCTTGTCCGCGACG---A
CGATGGCGAACGGCATAAGGACTGGAGCAGCTGATGGCACGGGTGCTCCTGGTCCGGCTGCTGCCGCGGCACAGGCTGCC
ACCCTAGCCGCGGCTCCTCCCGTCGCTGCCGCTGCAATGGCACCACCTTCGGAGCGAGCTGCATTGGAGGATCCGTACAA
GAACAGCAAGAGGAAGGTGCCGAACGGGCCCGATCCGATTCACAATAGGTATTGTTTACTCATCTCATCTCTGGTAGTTC
TTGGCTTCTTGCTTACTTCAATTGTGCTCGTGTTT---------------------------------------------
-------------------------------------------------------TAATTACTTCTCTAGCACAATACCT
CTAACAAAATTACACCTAATTGTACTGTAAAAACTCTCCATAC---------TACAAAGTAGACAAAAATATAACTG---
--------------CAAATGCTAATAATGCAGAATCACA---------TAGCATGCACATACTCAGTTTTTTAGATAAAA
AA---ATGGAAGGACCCTCTGGCTGGTCCCCTGCATCA-------TGTCCATGCAGACTTACCTCGATTCACCGGCTTGT
TTTGCCTCTTGTGTATGTGGCTAACCAAGACCATGATGTGTTTGCTTGCTTTTTCAGGAGAGCCAGATGGGGAGACGCAC
CGGCAAGGAGAGTGTAAGGCA-------------TCACGTAAACCGTGGATCAATGTTGAGAGGCTCGGCGAGC-----G
AGCACACAAACATTGAGGTGGAATGGAAGGTTCCATGGCTAAGAGCCATGCATGCATATGGTGGTGCTCATGATGGTGGA
-GGGCAGTTATATAGTTACAAGTATTCATTCATGTATTAGTAGTAGTAGTAGATACAGAGGGGTAGAGGAAGATGCATGG
TGCACACTCCATGGCACCGTGGTTGCTTTGGTCAAAGTGCTGCTTTGTTCTCCTCTCTTGATGAGGTTTTGTTCTTTTCC
TTTTTCTTCTTTGGAGGAGGGGTTAATGGTGTTAAAAGGAGCAGTCCA-------------------------ACTTACT
T--CTCATTCACACAGAGTAAAGCTCAAAGATTCTTGGCATGCACA----GATTCTACTTCATTCTATTAGCTTTCATTC
TTCCCGATGATCTCTTTAATAATGGACCGTATGTTTGCATGCTTTCAAAGGACTCAAACGACTAGTGAGCAACTCTAATA
AGCTGCAGCCATCAAGCTGTAAGGATCAAAATATCATATTTTTTATGAGTTGTATGAGAAATAAGGGAAGCAGGATGTAA
ATTTACAGCCAGCTGCAGCATGAATCCAAGATCATTGTGAACAGTGTACGGTGGGTCATATCTCTACTCCTATAAAAATC
TGAGTTGGTGATGATGGTGTGCCTGCCATCTATCACCAATTGCCGTCGGATCTGAATTTGACGCATACAAAGCAAACTGT
TGCAGTTTTGCAAGAAAAAGGCCGCACTTGTTTCCATATTTACAAACAACTCCTTGTCTCTCACAATTGTTCCCACTCCC
ACCACAATATAGCTTTAATGTGACTGACCCAAGCCTCTGCACACACTTACATTTGAGTACTGCTAGTAACAACCATCAAC
GATCAATCATACTCCGGGATTCCACTGTGGAAGTGCAGTGCAGGGCTACGGAGGCCAGGAGAACGTACGTGTAGGTGACG
TTCTTGTCACGCAGAAACCAGAGCAGG
>chr4A_1
CGATGGGTCCTCTTCGATCGGGAAACCCAACTCACTACTCAAAGCGGCAGAAACCGTAGGGCCCCGGGAGTATCACATGG
TCGCTTTCCATCCCAAATTA-ACCAGGAACGGAAACCCAAACCCAAAGCCGCCGGCCGGGGAAGAAGCAAAGGGAATGAC
CTACCTGATGACCACCACCTCCGGCCGGCTCCCCTGCTCGCTGATACGAGCTTG--GCTTCCCTCACATCACATGTCGCC
GTCGATCGACCAAACCCATATGCGGTGGAATCATTGGAACCATACCATACTCGCTCCAAGAATCA----TCCTTGCTAAA
GCAACCATAGT--AGTATCAATCAATCTGATAGTGCATGCTAAGTGGAGCAGTAGGGCCCTGCATGCATGGCTAGATAGA
TAATCTACTCTACCCAGTTTGGAACCTCCCTGTCCTCCTCGGGCGCGCAGCTGAATTCTGCTATTTATACGTAGGCTGAT
CACGACTAGACCTGCTGTGTCTG--------TGTGTTGCTGATTTCTCTGCTGCTTTTTTCGAGCCAAGCA-ACAAAGGG
AAACCAGAGCCACGCCACATCTCTATCTGCTGC-------ACATCAACGTCAGGGGATCGATCAAAGCTAAAACTACGCC
AGATAGAGACACAAGAACAGATTTCCCATATATATATGTACACCAGATAGAGTAGAAGACCATACTATTATCGGCAGCTA
G----GACCATAGTATCACACACT------CACTCACTCTCTCTTCTTC-------CAATCGCCGGCCACTTGTCACTCT
CCTCTGCTCACTGCTC-------CGAACAGAGGAGCTCCAACTCCATCACCTCCTCTTCAGCAC---------CAGGCGG
AGGAGACGTCGTGGTACTTGTGCGAAGCAAGCTAGCTAGCTAGGCACGAGAGAATTCAGGCTGTGGTGAACTGATCACTG
ATCACTGATCAGTCACCTGATCTAGCTTGCAGCCCGCAG-AAGCAAGAAGAAGTCCAGC--------CAGAGCGAGCCAT
GGGCGGCATTGCTGCTGGTCGATGCCGGATCAGTGGCCTGGCCTTGCTCGTCTGCGCCGTGCTCTTGTCGG---CG---A
CGATGGCGAACGGCATCAGGACTGGGGCAGTTGGTGGCACGGGTGCTCCTGGTCCGGCTGCTGCCGCGGCACAGGCTGCC
ACCCTAGCTGCGGCTCCTCCCGTCGCTGCCGCTGCAACGACGCCACCTTCGGAGGGAGCTGCATTGGAGGATCCATACAA
GAACAGCAAGAGGAAGGTGCCGAACGGGCCCGATCCGATTCACAATCGGTATTG-TTACTCGTGTCATCTCTGGTCGTTC
TTT--------CTTCCTAAAACTGCGCTCGTGCTTAGTTTACTTCTCTAGTAGACTAGTGCTACCTCTGTACCAGATTTG
AACTGCAAAAACGTCTTATATTTTGATACGAAGAAAGTATAGAACTTCTAACGTATAACCACACT---------------
-------------------TTGTACTGTAAAAACTCTCCATAC---------TACAAAGTAGACAAAAATATAACTG---
--------------CTAATGCTAATAATGCAGAGCCATA---------TAGCATGCACCTACTCAGTTATTTAGATAAAA
AAAATATGGAAGGATCCTCTGGCTGGTCCCCTGCATCAAGCATCATGGCCATGCAGACTTACCTCGATTCACCGGCTTGT
TTTGCCTCTTGTGCATGTGGCTAACCAAAACCATGATGTGTTTGCTT----TTTCAGGAGAGCCAGATGGGGAGACGCAC
CGGCAAGGAGAGTGTAAGGCAGGACAGG-AGCAATCACGAAAACCGTCGATCAATGCTGAGAGGCTCAACGAGCGAGCAG
AGCACACAAACATTGAGGTGGAATGGAAGGTTCCATGGCTAAGAGCCATGCATGCATGTGGTGGTGCTCATGATGGTGGA
-GGGCAGTTATATAGTTATAAGTATTCATTCATGTATTAG------TAGTAGATACAGAGGGGTAGAGGAAGATGCATGG
TGCACACTCCATGGCACCGTGGTTGCTTTGGCCAAAGTGCT---TTGTTCTCCTCTCTTGATGATGTTTTGTTCTTTTTC
TTTTTCTTCTTTGGAGGAGGGGTTAATGGTGTTAAAAGGAGCACTCCAACTCCAAGCTGAGCCTGCTATCACTACTCACT
TCACTCA--CACAGAGAGTAAAGCTCAAAGATTCCTGGCATGCACATTTCGATTCTACTCCTA-CTATTAGCTTTCAGTC
TTCCCGATGATGTTTAATAAT-TGGGCCGTATGTTTGCATGCTTTCAAAGGACTCAAA----------------------
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>chr4B_1
CGATGGGTCCTCTTCGATCGGGAAACCCAACTCACTACTCAAAGCGGCAGAAGCCGTAGGGCCCCGGGAGTATCACATGG
TCGCTTTCCGTCCCAAATTACACCAGGAACGGAAACCCAAACCCAAAGCCGCCGGAG-----------------------
-TACCTGATGACCACCACCTCCGGCCGGCTCCCCTGCTCGCC----GATACGACGAGCTAGGCTCACATCACATGTCGCC
GTCGA----CCAAACCCATATGCGGTGGAATCATTCGAGCCATG-----CTCACTCTAAGAATCA----TCCTTACCAAA
GCAACCATAGT-----ATCAAACAGTCTGATAGTGCATGCTAAGTGGAGTAGTAGGCCCCTGCATGCATGGCTAGATAGA
TAATCTACTCTACCCATTTTGGAACCTCCCTGTCTTCCTCGGGCGCGCAGCTAAATTCTGCTATTTATACGTAGGCTGAT
CACGACTAGACCTGCTGCGTCTGTG-----------TGCTGATTTCTCTGCTGCTTTTTTCGAGCCAAGCA-ACAAAGGG
AAACCAGAGCCTCGCCACATCTCTATCTGCTGC-------ACATCAACGTCAGGGGATCGATCAAAGCTAAAACTACGCC
AGATAGAGACACAAGAACAGATTTCCCATATATATATGTAGA----------TAGAAGACCATAGTACTATCGGCAGCTA
G----GACCATAGTATCACACACA------CACTCACTCTCTCTTCTTC-------CAATCGCCGGCCACTTGTCACTCT
CCTCTGCTCACTGCTCCCAAGGTCGAACAGAGGAGCTCCAACTCCATCACCTCCTCTTCAGCATCAGGAGGGGCAGGAGG
AGGAGACGCCGTAGCACTTCTGCGAAGCAAGCTAGTTAGCTGGGCACGAGAGAATTCAGGCTGTGGTGAACTGATCAGCG
AT-------CAGTCGCCTGATCTAGC----GGCCGGAGGAAAGCAAG-AGAAGTCCGGG--------CAGAGCGAGCCAT
GGGCGGCATTGCTGGTGGTCGATGCCGGATCAGTGGGCTGGCCCTGCTCGTCTGCGCGGTGCTCTTGTCGG---CGGCGA
CGATGGCGAAAGGCATCAGGACTGGGGCAGTTGGTGGCATGGGTGCTCCTGGTCCGGCTGCTGCCGCGGCACAGGCTGCC
ACCCTAGTCGCGGCTCCTCCCGTCGCCGCTGCCGCCACGGCACCGCCTTCGGAGCGAGCTGCATTGGAGGATCCATACAA
GAACAGCAAGAGGAAGGTGCCGAACGGGCCCGATCCGATTCACAATAGGTATTG-TTACTCATCTCATCTCTGGTTGTTC
TTC--------CTTCCTCCAATTGTGCTCGTGTTT---------------------------------------------
-------------------------------------------------------TAACCACACC---------------
-------------------TTGTACTGTAAAAACTATCAATACTACTACAAATACAAAGTAGACAAAAAAAAAAATAACT
GCAGTACCCACAACCAAGTGCTAATAATTTAGAACAATATACTGTAACTAGCATGCACATACTCAGGTTACCCTTTGGAT
-A---ATGGAAGGATCCTCTGGCTGGTCCCCTGCATCA-------TGGCCACGCAAACTTACCTCGATTCACCGGTTTGT
TTTGCCTCT-GTGCATGTGGCTAACCATGATGTTCTTGC--TTGCTT----TTTCAGGAGAGCCAGATGGGGAGACGCAC
CGGCAAGGAGAGTGTAAGGCAGGACAGGGAGCAATCACGTAGACCGTAGATCAATGTTGAGAGGCTCGGCGAGCGAGCAG
AGCACACGAACATTGAGGTGGAATGGAAGGTTCCATGGCTAAGAGCCATGCATGCATATGGTGGTGCTCATGATGGTCAA
GGGGCAGTTATATAGTTATAAGTATTCATTCATGTATTAG------TAGTAGATACAGAGGGGTAGAGGAAGATGCATGG
TGCACACTCCATGGCACCGTGGTTGCTTTGGTCAAAGTGCTGCTTTGTTCTCCTCTCTTGATGAGGTTTTGTTCTTTTTC
TTTTTCTTCTTTGGAGGAGGGGTTAATGGTGTTAAAAGGAGCACTCCAACT---------------------TACTCACT
T--CTCA--TTCACAGAGTAAAGCTCAAAGATTCTTCGCATGCATA----GATTCTACTTCACCGAAGTAGCTTTCATTC
TTCCCAATGATCTCTTTAATAATGGACCGTATGTTTGCATGCTTTCAAAGGACTCAAAGGACTAGTGAGCAAGTCTAATG
AGCTGCAGCCAGCAAGCTGTAAGGATCAAAATGTCATATTTTTTATGAGTTGTATGAGAAAGAAGGAAAGCAGGATGTAA
ATTTACAACCGGCTGCAGCATGAATCCAAGAATTATTGTGAAAGTGTATGATGGGTCATAT-------------------
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>SNPs
------------------------------------S-------------------------------------------
--------------S---------------------------------------------------------------S-
------S---------------------------------S-SSSS-----S----------------------------
---------------------------------------------SSS--------S---S-SS-SSSS-----------
-----------SS-------------------------------------------------------------------
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-------------------------SSSSSS----------------------------------------S--------
--------------------------------SSSSSSSS-------------------------------------S--
------------------------------------SS------------------------------------------
-SSSS-------------------SSSSSS-----S-------------SSSSSSS------------------------
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---------------S-------S----S----------------------S----------------------------
-------S--------------------------------------------------SSSSSSSSS-------------
-------------------S-------------------------------S-----------------S-SSS------
----------------S--------S----S--S----------------------------------------------
-------------------------------------S------------------------------------S-----
------------------------------------------------------S--------------------S----
--SSSSSSSSS---S--S--------------------------------------------------------------
----------------------------------------------------------SS--SS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
----------------------------------S--S------------------------------------------
--------------S--------------------------------S--------------------------------
-------------S---------------------------------SSSS-----------------------------
-----------------------------------------------S--------------------------------
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------------------S---------------------SSSSSS----------------------------------
------------------------------------------------------------------------------S-
-------------------------------------------S--------------------------------S---
-------SS-----------------------------------------------------SS----------------
----------------------------------------------------------S-------------S------S
-----------S--------------------S----------------------------S----S-------------
-------S--S--------------------SSSS-SSSS-S------S-S----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_212
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--------------------------------CCTGCTCGATCGCTGATACC----------------------------
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>reverse_1137
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----------------AAGGACTGGAGCAGCTGATG--------------------------------------------
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>forward_507
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-------AGACCTGCTGTGTCTGTGTC-----------------------------------------------------
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>reverse_2656
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---------------AAAAGGCCGCACTTGTTTCC---------------------------------------------
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