Multiple sequence alignment - TraesCS4D01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G029300 chr4D 100.000 5435 0 0 1 5435 13040119 13045553 0.000000e+00 10037.0
1 TraesCS4D01G029300 chr4D 87.273 110 7 5 5059 5163 13244586 13244479 9.560000e-23 119.0
2 TraesCS4D01G029300 chr4A 96.492 4305 105 15 371 4658 589493429 589497704 0.000000e+00 7071.0
3 TraesCS4D01G029300 chr4A 82.692 260 31 10 4776 5025 589497537 589497792 9.170000e-53 219.0
4 TraesCS4D01G029300 chr4B 94.142 3653 134 33 909 4538 23656980 23660575 0.000000e+00 5487.0
5 TraesCS4D01G029300 chr4B 89.325 459 41 3 459 911 23656494 23656950 2.200000e-158 569.0
6 TraesCS4D01G029300 chr4B 93.578 218 12 2 125 341 23656295 23656511 1.890000e-84 324.0
7 TraesCS4D01G029300 chr4B 85.463 227 21 8 4852 5072 23660577 23660797 5.480000e-55 226.0
8 TraesCS4D01G029300 chr4B 93.220 118 8 0 5209 5326 23660881 23660998 2.010000e-39 174.0
9 TraesCS4D01G029300 chr4B 97.059 34 1 0 5156 5189 23660862 23660895 2.110000e-04 58.4
10 TraesCS4D01G029300 chrUn 93.043 115 7 1 344 458 136395230 136395343 3.370000e-37 167.0
11 TraesCS4D01G029300 chrUn 89.362 94 5 3 5058 5147 50839310 50839402 4.450000e-21 113.0
12 TraesCS4D01G029300 chr3D 92.308 117 7 2 340 456 24569596 24569710 1.210000e-36 165.0
13 TraesCS4D01G029300 chr3D 87.000 100 13 0 5327 5426 170663283 170663184 4.450000e-21 113.0
14 TraesCS4D01G029300 chr3D 84.404 109 17 0 5327 5435 558088832 558088940 2.070000e-19 108.0
15 TraesCS4D01G029300 chr2B 92.373 118 6 3 344 461 134253616 134253730 1.210000e-36 165.0
16 TraesCS4D01G029300 chr7B 92.920 113 7 1 344 456 380073204 380073315 4.360000e-36 163.0
17 TraesCS4D01G029300 chr7B 92.920 113 7 1 344 456 648273616 648273505 4.360000e-36 163.0
18 TraesCS4D01G029300 chr7B 89.423 104 11 0 5327 5430 745228442 745228339 1.230000e-26 132.0
19 TraesCS4D01G029300 chr7B 89.011 91 10 0 5340 5430 745202943 745203033 4.450000e-21 113.0
20 TraesCS4D01G029300 chr3B 92.920 113 7 1 344 456 534159554 534159665 4.360000e-36 163.0
21 TraesCS4D01G029300 chr2D 92.920 113 7 1 340 452 206257899 206257788 4.360000e-36 163.0
22 TraesCS4D01G029300 chr2D 88.172 93 6 4 5059 5147 643169607 643169698 7.450000e-19 106.0
23 TraesCS4D01G029300 chr2D 87.097 93 7 3 5058 5146 532552770 532552679 3.460000e-17 100.0
24 TraesCS4D01G029300 chr6B 89.394 132 8 6 344 474 61212080 61212206 1.570000e-35 161.0
25 TraesCS4D01G029300 chr6B 91.781 73 5 1 5059 5131 712105027 712105098 3.460000e-17 100.0
26 TraesCS4D01G029300 chr3A 88.462 104 12 0 5324 5427 474150306 474150409 5.720000e-25 126.0
27 TraesCS4D01G029300 chr3A 86.792 106 14 0 5325 5430 644782642 644782537 9.560000e-23 119.0
28 TraesCS4D01G029300 chr3A 84.685 111 17 0 5325 5435 698532816 698532706 1.600000e-20 111.0
29 TraesCS4D01G029300 chr3A 86.598 97 7 4 5056 5147 706252807 706252712 9.630000e-18 102.0
30 TraesCS4D01G029300 chr2A 87.736 106 13 0 5325 5430 42478312 42478207 2.060000e-24 124.0
31 TraesCS4D01G029300 chr5D 83.929 112 18 0 5324 5435 54205432 54205321 2.070000e-19 108.0
32 TraesCS4D01G029300 chr6D 86.598 97 7 4 5056 5147 450292090 450291995 9.630000e-18 102.0
33 TraesCS4D01G029300 chr6D 83.654 104 10 6 5065 5163 45967978 45967877 2.080000e-14 91.6
34 TraesCS4D01G029300 chr1D 83.036 112 14 4 5059 5166 214453536 214453426 4.480000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G029300 chr4D 13040119 13045553 5434 False 10037.000000 10037 100.000000 1 5435 1 chr4D.!!$F1 5434
1 TraesCS4D01G029300 chr4A 589493429 589497792 4363 False 3645.000000 7071 89.592000 371 5025 2 chr4A.!!$F1 4654
2 TraesCS4D01G029300 chr4B 23656295 23660998 4703 False 1139.733333 5487 92.131167 125 5326 6 chr4B.!!$F1 5201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 358 0.243907 ATGTGCTTGTAGTCGTCGCT 59.756 50.000 0.00 0.0 0.00 4.93 F
359 361 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.0 0.00 3.02 F
360 362 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.0 0.00 3.08 F
2047 2090 1.136891 ACTCCAGGCAAAACAACAAGC 59.863 47.619 0.00 0.0 0.00 4.01 F
2192 2235 2.475685 CGCATGCTCAGATTCAACACAG 60.476 50.000 17.13 0.0 0.00 3.66 F
3500 3552 3.226777 AGGCTGTACTGCATAGACTAGG 58.773 50.000 23.89 0.0 30.49 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2059 1.985159 TGCCTGGAGTTAATGTCACCT 59.015 47.619 0.00 0.0 0.0 4.00 R
2192 2235 2.296190 CCTTTGCCCTGGTCAAGTTTAC 59.704 50.000 0.00 0.0 0.0 2.01 R
2222 2265 6.831868 TGGTAAAACTATAAAGCATCCTTCCC 59.168 38.462 0.00 0.0 0.0 3.97 R
3709 3768 2.758423 TCGTAAATAGCTGCACTCCTCA 59.242 45.455 1.02 0.0 0.0 3.86 R
4096 4155 6.597280 GCAAGATCAAACATAAGTCTCCTCTT 59.403 38.462 0.00 0.0 0.0 2.85 R
5335 5399 0.033366 GATTTGCAAAGCCCGGTTGT 59.967 50.000 16.51 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.325421 TGTACTACTCCATTCTAAGATCGATC 57.675 38.462 17.91 17.91 0.00 3.69
26 27 8.158132 TGTACTACTCCATTCTAAGATCGATCT 58.842 37.037 22.32 22.32 39.22 2.75
27 28 9.656040 GTACTACTCCATTCTAAGATCGATCTA 57.344 37.037 27.52 13.00 35.76 1.98
31 32 8.514330 ACTCCATTCTAAGATCGATCTATACC 57.486 38.462 27.52 0.00 35.76 2.73
32 33 8.333235 ACTCCATTCTAAGATCGATCTATACCT 58.667 37.037 27.52 14.39 35.76 3.08
33 34 9.839817 CTCCATTCTAAGATCGATCTATACCTA 57.160 37.037 27.52 14.75 35.76 3.08
34 35 9.616156 TCCATTCTAAGATCGATCTATACCTAC 57.384 37.037 27.52 0.00 35.76 3.18
35 36 9.397280 CCATTCTAAGATCGATCTATACCTACA 57.603 37.037 27.52 7.74 35.76 2.74
37 38 9.961264 ATTCTAAGATCGATCTATACCTACACA 57.039 33.333 27.52 5.13 35.76 3.72
38 39 8.774890 TCTAAGATCGATCTATACCTACACAC 57.225 38.462 27.52 0.00 35.76 3.82
39 40 8.373220 TCTAAGATCGATCTATACCTACACACA 58.627 37.037 27.52 0.00 35.76 3.72
40 41 6.804770 AGATCGATCTATACCTACACACAC 57.195 41.667 26.27 0.00 34.85 3.82
41 42 6.296803 AGATCGATCTATACCTACACACACA 58.703 40.000 26.27 0.00 34.85 3.72
42 43 5.746307 TCGATCTATACCTACACACACAC 57.254 43.478 0.00 0.00 0.00 3.82
43 44 5.187687 TCGATCTATACCTACACACACACA 58.812 41.667 0.00 0.00 0.00 3.72
44 45 5.065602 TCGATCTATACCTACACACACACAC 59.934 44.000 0.00 0.00 0.00 3.82
45 46 5.163693 CGATCTATACCTACACACACACACA 60.164 44.000 0.00 0.00 0.00 3.72
46 47 6.459710 CGATCTATACCTACACACACACACAT 60.460 42.308 0.00 0.00 0.00 3.21
47 48 6.203808 TCTATACCTACACACACACACATC 57.796 41.667 0.00 0.00 0.00 3.06
48 49 2.543777 ACCTACACACACACACATCC 57.456 50.000 0.00 0.00 0.00 3.51
49 50 1.765904 ACCTACACACACACACATCCA 59.234 47.619 0.00 0.00 0.00 3.41
50 51 2.171659 ACCTACACACACACACATCCAA 59.828 45.455 0.00 0.00 0.00 3.53
51 52 2.548057 CCTACACACACACACATCCAAC 59.452 50.000 0.00 0.00 0.00 3.77
52 53 2.121291 ACACACACACACATCCAACA 57.879 45.000 0.00 0.00 0.00 3.33
53 54 2.016318 ACACACACACACATCCAACAG 58.984 47.619 0.00 0.00 0.00 3.16
54 55 2.287769 CACACACACACATCCAACAGA 58.712 47.619 0.00 0.00 0.00 3.41
55 56 2.288729 CACACACACACATCCAACAGAG 59.711 50.000 0.00 0.00 0.00 3.35
56 57 2.170397 ACACACACACATCCAACAGAGA 59.830 45.455 0.00 0.00 0.00 3.10
57 58 3.205338 CACACACACATCCAACAGAGAA 58.795 45.455 0.00 0.00 0.00 2.87
58 59 3.002656 CACACACACATCCAACAGAGAAC 59.997 47.826 0.00 0.00 0.00 3.01
59 60 3.205338 CACACACATCCAACAGAGAACA 58.795 45.455 0.00 0.00 0.00 3.18
60 61 3.627123 CACACACATCCAACAGAGAACAA 59.373 43.478 0.00 0.00 0.00 2.83
61 62 3.627577 ACACACATCCAACAGAGAACAAC 59.372 43.478 0.00 0.00 0.00 3.32
62 63 3.879295 CACACATCCAACAGAGAACAACT 59.121 43.478 0.00 0.00 0.00 3.16
63 64 3.879295 ACACATCCAACAGAGAACAACTG 59.121 43.478 0.00 0.00 40.68 3.16
64 65 2.880890 ACATCCAACAGAGAACAACTGC 59.119 45.455 0.00 0.00 38.74 4.40
65 66 2.708216 TCCAACAGAGAACAACTGCA 57.292 45.000 0.00 0.00 38.74 4.41
66 67 2.997980 TCCAACAGAGAACAACTGCAA 58.002 42.857 0.00 0.00 38.74 4.08
67 68 3.554934 TCCAACAGAGAACAACTGCAAT 58.445 40.909 0.00 0.00 38.74 3.56
68 69 3.953612 TCCAACAGAGAACAACTGCAATT 59.046 39.130 0.00 0.00 38.74 2.32
69 70 4.046462 CCAACAGAGAACAACTGCAATTG 58.954 43.478 6.30 6.30 38.74 2.32
70 71 4.202040 CCAACAGAGAACAACTGCAATTGA 60.202 41.667 15.88 0.00 38.74 2.57
71 72 5.508489 CCAACAGAGAACAACTGCAATTGAT 60.508 40.000 15.88 1.76 38.74 2.57
72 73 6.294120 CCAACAGAGAACAACTGCAATTGATA 60.294 38.462 15.88 0.00 38.74 2.15
73 74 6.882610 ACAGAGAACAACTGCAATTGATAA 57.117 33.333 15.88 0.00 38.74 1.75
74 75 6.906659 ACAGAGAACAACTGCAATTGATAAG 58.093 36.000 15.88 5.68 38.74 1.73
75 76 5.798934 CAGAGAACAACTGCAATTGATAAGC 59.201 40.000 15.88 0.07 33.57 3.09
76 77 5.709164 AGAGAACAACTGCAATTGATAAGCT 59.291 36.000 15.88 3.92 33.57 3.74
77 78 5.706916 AGAACAACTGCAATTGATAAGCTG 58.293 37.500 15.88 7.27 33.57 4.24
78 79 5.474532 AGAACAACTGCAATTGATAAGCTGA 59.525 36.000 15.88 0.00 33.57 4.26
79 80 5.051891 ACAACTGCAATTGATAAGCTGAC 57.948 39.130 15.88 0.00 33.57 3.51
80 81 4.520111 ACAACTGCAATTGATAAGCTGACA 59.480 37.500 15.88 0.00 33.57 3.58
81 82 5.009911 ACAACTGCAATTGATAAGCTGACAA 59.990 36.000 15.88 0.00 33.57 3.18
82 83 5.306532 ACTGCAATTGATAAGCTGACAAG 57.693 39.130 10.34 0.00 0.00 3.16
93 94 1.527034 GCTGACAAGCCACATTCAGA 58.473 50.000 1.64 0.00 44.22 3.27
94 95 1.881973 GCTGACAAGCCACATTCAGAA 59.118 47.619 1.64 0.00 44.22 3.02
95 96 2.095364 GCTGACAAGCCACATTCAGAAG 60.095 50.000 1.64 0.00 44.22 2.85
96 97 2.486982 CTGACAAGCCACATTCAGAAGG 59.513 50.000 0.00 0.00 38.19 3.46
99 100 4.421365 GCCACATTCAGAAGGCCA 57.579 55.556 5.01 0.00 41.25 5.36
100 101 2.187073 GCCACATTCAGAAGGCCAG 58.813 57.895 5.01 0.00 41.25 4.85
101 102 0.610232 GCCACATTCAGAAGGCCAGT 60.610 55.000 5.01 0.00 41.25 4.00
102 103 1.457346 CCACATTCAGAAGGCCAGTC 58.543 55.000 5.01 0.93 0.00 3.51
103 104 1.004044 CCACATTCAGAAGGCCAGTCT 59.996 52.381 5.01 3.91 0.00 3.24
104 105 2.082231 CACATTCAGAAGGCCAGTCTG 58.918 52.381 23.97 23.97 43.28 3.51
105 106 1.093159 CATTCAGAAGGCCAGTCTGC 58.907 55.000 24.75 0.00 41.94 4.26
106 107 0.694771 ATTCAGAAGGCCAGTCTGCA 59.305 50.000 24.75 18.01 41.94 4.41
107 108 0.473755 TTCAGAAGGCCAGTCTGCAA 59.526 50.000 24.75 18.18 41.94 4.08
108 109 0.250467 TCAGAAGGCCAGTCTGCAAC 60.250 55.000 24.75 0.00 41.94 4.17
109 110 0.250640 CAGAAGGCCAGTCTGCAACT 60.251 55.000 20.00 0.00 36.38 3.16
121 122 3.585990 GCAACTGCACACACGCCT 61.586 61.111 0.00 0.00 41.59 5.52
122 123 2.250939 GCAACTGCACACACGCCTA 61.251 57.895 0.00 0.00 41.59 3.93
123 124 1.862123 CAACTGCACACACGCCTAG 59.138 57.895 0.00 0.00 0.00 3.02
132 133 3.062234 GCACACACGCCTAGTTTAATCTC 59.938 47.826 0.00 0.00 0.00 2.75
170 171 6.509418 TTTCTCTGGCGCATTAGTTTATTT 57.491 33.333 10.83 0.00 0.00 1.40
184 185 7.865706 TTAGTTTATTTCCTCAGAGAATGCC 57.134 36.000 0.00 0.00 0.00 4.40
207 208 3.071747 ACTTTCTCGGAAAGAGGCTTTCT 59.928 43.478 24.21 5.29 46.82 2.52
209 210 1.276421 TCTCGGAAAGAGGCTTTCTGG 59.724 52.381 21.89 15.16 46.82 3.86
257 259 7.334421 TCCAGTATTGAGTTCAGCACTTTTATC 59.666 37.037 0.00 0.00 35.01 1.75
259 261 5.904362 ATTGAGTTCAGCACTTTTATCCC 57.096 39.130 0.00 0.00 35.01 3.85
264 266 6.323739 TGAGTTCAGCACTTTTATCCCTTTTT 59.676 34.615 0.00 0.00 35.01 1.94
268 270 3.903714 AGCACTTTTATCCCTTTTTGGCT 59.096 39.130 0.00 0.00 0.00 4.75
292 294 5.574815 TTTGCTTTACTTACGTACGGTTC 57.425 39.130 21.06 0.00 0.00 3.62
311 313 5.623673 CGGTTCATACTGTTGTTTTTAGTGC 59.376 40.000 0.00 0.00 0.00 4.40
313 315 5.699097 TCATACTGTTGTTTTTAGTGCCC 57.301 39.130 0.00 0.00 0.00 5.36
341 343 6.205270 TGCCTACAATATAGCATCACAATGTG 59.795 38.462 7.12 7.12 35.18 3.21
342 344 6.605849 CCTACAATATAGCATCACAATGTGC 58.394 40.000 8.78 0.00 41.57 4.57
349 351 3.837213 GCATCACAATGTGCTTGTAGT 57.163 42.857 8.78 0.00 46.43 2.73
350 352 3.751621 GCATCACAATGTGCTTGTAGTC 58.248 45.455 8.78 0.00 46.43 2.59
351 353 3.725895 GCATCACAATGTGCTTGTAGTCG 60.726 47.826 8.78 0.00 46.43 4.18
352 354 3.106242 TCACAATGTGCTTGTAGTCGT 57.894 42.857 8.78 0.00 46.43 4.34
353 355 3.057019 TCACAATGTGCTTGTAGTCGTC 58.943 45.455 8.78 0.00 46.43 4.20
354 356 2.058798 ACAATGTGCTTGTAGTCGTCG 58.941 47.619 0.00 0.00 46.30 5.12
355 357 1.068474 AATGTGCTTGTAGTCGTCGC 58.932 50.000 0.00 0.00 0.00 5.19
356 358 0.243907 ATGTGCTTGTAGTCGTCGCT 59.756 50.000 0.00 0.00 0.00 4.93
357 359 0.876399 TGTGCTTGTAGTCGTCGCTA 59.124 50.000 0.00 0.00 0.00 4.26
358 360 1.135774 TGTGCTTGTAGTCGTCGCTAG 60.136 52.381 0.00 0.00 0.00 3.42
359 361 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
360 362 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
361 363 1.667724 GCTTGTAGTCGTCGCTAGGTA 59.332 52.381 0.00 0.00 0.00 3.08
362 364 2.286301 GCTTGTAGTCGTCGCTAGGTAG 60.286 54.545 0.00 0.00 0.00 3.18
363 365 2.680312 TGTAGTCGTCGCTAGGTAGT 57.320 50.000 0.00 0.00 0.00 2.73
364 366 2.544685 TGTAGTCGTCGCTAGGTAGTC 58.455 52.381 0.00 0.00 0.00 2.59
365 367 2.167281 TGTAGTCGTCGCTAGGTAGTCT 59.833 50.000 0.00 0.00 0.00 3.24
366 368 3.381590 TGTAGTCGTCGCTAGGTAGTCTA 59.618 47.826 0.00 0.00 0.00 2.59
367 369 2.820330 AGTCGTCGCTAGGTAGTCTAC 58.180 52.381 0.95 0.95 0.00 2.59
368 370 1.520590 GTCGTCGCTAGGTAGTCTACG 59.479 57.143 3.92 0.00 0.00 3.51
369 371 1.405463 TCGTCGCTAGGTAGTCTACGA 59.595 52.381 3.92 0.00 32.96 3.43
454 457 5.008811 TCGGAAGTTTTCTCCGCAAAAATAA 59.991 36.000 6.39 0.00 45.66 1.40
617 624 4.500887 GCAGTACATAGCCTATGTTTCCGA 60.501 45.833 21.64 1.52 46.69 4.55
708 715 3.079578 CTGAGTTCTGACATGGCATTGT 58.920 45.455 0.00 0.00 0.00 2.71
1109 1151 4.160252 ACAACCAAAATTCTGAAGCACTGT 59.840 37.500 0.00 0.00 0.00 3.55
1740 1783 2.935740 GCCTGGCTTGGGAAACAGC 61.936 63.158 12.43 0.00 0.00 4.40
1868 1911 6.851222 TGAGAGAGTTTCACAACATCTTTC 57.149 37.500 0.00 0.00 33.54 2.62
1941 1984 5.477637 TGATGCCATCAATTCTCTGTCAAAA 59.522 36.000 4.55 0.00 36.11 2.44
2047 2090 1.136891 ACTCCAGGCAAAACAACAAGC 59.863 47.619 0.00 0.00 0.00 4.01
2192 2235 2.475685 CGCATGCTCAGATTCAACACAG 60.476 50.000 17.13 0.00 0.00 3.66
2563 2606 6.887013 ACTTCTGACTGCATAAATGAGAGAT 58.113 36.000 0.00 0.00 0.00 2.75
2748 2792 8.148807 TCTGTTGTTTCAACGAATCAAGAATA 57.851 30.769 7.87 0.00 33.68 1.75
2855 2899 5.104776 ACTGCTGCTTTGAATCATACTCCTA 60.105 40.000 0.00 0.00 0.00 2.94
3177 3221 7.386059 TGTAGACTCTAATGCAACTTTCATCA 58.614 34.615 0.00 0.00 0.00 3.07
3178 3222 8.043113 TGTAGACTCTAATGCAACTTTCATCAT 58.957 33.333 0.00 0.00 0.00 2.45
3500 3552 3.226777 AGGCTGTACTGCATAGACTAGG 58.773 50.000 23.89 0.00 30.49 3.02
3534 3586 5.414789 TTTGTAGTACATTGCCAGCTCTA 57.585 39.130 3.28 0.00 0.00 2.43
3634 3693 4.320421 GCTAACTCACACATTGCAACATGA 60.320 41.667 16.58 10.20 0.00 3.07
3707 3766 9.260002 CACTTCTTTTAGTATGCCAAAAATGTT 57.740 29.630 0.00 0.00 0.00 2.71
3708 3767 9.260002 ACTTCTTTTAGTATGCCAAAAATGTTG 57.740 29.630 0.00 0.00 0.00 3.33
3709 3768 9.260002 CTTCTTTTAGTATGCCAAAAATGTTGT 57.740 29.630 0.00 0.00 0.00 3.32
4312 4371 0.322816 TCTGGATCCAAACTGGCTGC 60.323 55.000 17.00 0.00 37.47 5.25
4315 4374 0.529378 GGATCCAAACTGGCTGCAAG 59.471 55.000 6.95 1.57 37.47 4.01
4333 4392 6.737254 TGCAAGCTGATGATGACATATATG 57.263 37.500 11.29 11.29 36.82 1.78
4446 4505 6.947258 TGCATGTATGTAGATCAAATTGACG 58.053 36.000 0.00 0.00 0.00 4.35
4450 4509 9.425893 CATGTATGTAGATCAAATTGACGAAAC 57.574 33.333 0.00 0.00 0.00 2.78
4459 4518 8.037758 AGATCAAATTGACGAAACTCAGTCTAT 58.962 33.333 0.00 0.00 38.16 1.98
4460 4519 7.582435 TCAAATTGACGAAACTCAGTCTATC 57.418 36.000 0.00 0.00 38.16 2.08
4461 4520 6.308041 TCAAATTGACGAAACTCAGTCTATCG 59.692 38.462 6.17 6.17 38.16 2.92
4462 4521 3.132629 TGACGAAACTCAGTCTATCGC 57.867 47.619 7.34 2.79 38.16 4.58
4463 4522 2.486592 TGACGAAACTCAGTCTATCGCA 59.513 45.455 7.34 4.80 38.16 5.10
4464 4523 3.057806 TGACGAAACTCAGTCTATCGCAA 60.058 43.478 7.34 0.00 38.16 4.85
4465 4524 3.502920 ACGAAACTCAGTCTATCGCAAG 58.497 45.455 7.34 0.00 37.03 4.01
4466 4525 4.672024 GACGAAACTCAGTCTATCGCAAGA 60.672 45.833 7.34 0.00 41.85 3.02
4467 4526 6.124515 GACGAAACTCAGTCTATCGCAAGAA 61.125 44.000 7.34 0.00 41.33 2.52
4468 4527 8.065383 GACGAAACTCAGTCTATCGCAAGAAC 62.065 46.154 7.34 0.00 41.33 3.01
4538 4597 5.586243 ACAATCTTCAAGCGTATATGCTGTT 59.414 36.000 20.02 2.66 46.60 3.16
4539 4598 5.914085 ATCTTCAAGCGTATATGCTGTTC 57.086 39.130 20.02 0.00 46.60 3.18
4540 4599 5.011090 TCTTCAAGCGTATATGCTGTTCT 57.989 39.130 20.02 1.51 46.60 3.01
4549 4608 5.174398 GCGTATATGCTGTTCTAAGCGTTAA 59.826 40.000 9.78 0.00 46.65 2.01
4550 4609 6.128902 GCGTATATGCTGTTCTAAGCGTTAAT 60.129 38.462 9.78 0.00 46.65 1.40
4551 4610 7.220604 CGTATATGCTGTTCTAAGCGTTAATG 58.779 38.462 0.00 0.00 46.65 1.90
4563 4622 3.638484 AGCGTTAATGTTTGTTGCCTTC 58.362 40.909 0.00 0.00 0.00 3.46
4564 4623 2.403698 GCGTTAATGTTTGTTGCCTTCG 59.596 45.455 0.00 0.00 0.00 3.79
4568 4627 5.516090 GTTAATGTTTGTTGCCTTCGAAGA 58.484 37.500 26.61 4.43 0.00 2.87
4569 4628 4.647424 AATGTTTGTTGCCTTCGAAGAA 57.353 36.364 26.61 10.89 45.90 2.52
4570 4629 3.691049 TGTTTGTTGCCTTCGAAGAAG 57.309 42.857 26.61 11.70 45.90 2.85
4571 4630 3.013921 TGTTTGTTGCCTTCGAAGAAGT 58.986 40.909 26.61 0.00 45.90 3.01
4572 4631 3.181501 TGTTTGTTGCCTTCGAAGAAGTG 60.182 43.478 26.61 10.59 45.90 3.16
4573 4632 0.944386 TGTTGCCTTCGAAGAAGTGC 59.056 50.000 26.61 19.99 45.90 4.40
4657 4718 8.862325 TTATGTCACTTGATACTGGACAATTT 57.138 30.769 0.00 0.00 41.30 1.82
4658 4719 6.801539 TGTCACTTGATACTGGACAATTTC 57.198 37.500 0.00 0.00 35.72 2.17
4659 4720 6.533730 TGTCACTTGATACTGGACAATTTCT 58.466 36.000 0.00 0.00 35.72 2.52
4660 4721 6.427853 TGTCACTTGATACTGGACAATTTCTG 59.572 38.462 0.00 0.00 35.72 3.02
4661 4722 5.412594 TCACTTGATACTGGACAATTTCTGC 59.587 40.000 0.00 0.00 0.00 4.26
4662 4723 4.702131 ACTTGATACTGGACAATTTCTGCC 59.298 41.667 0.00 0.00 0.00 4.85
4663 4724 3.620488 TGATACTGGACAATTTCTGCCC 58.380 45.455 0.00 0.00 0.00 5.36
4664 4725 3.010027 TGATACTGGACAATTTCTGCCCA 59.990 43.478 0.00 0.00 34.72 5.36
4665 4726 2.610438 ACTGGACAATTTCTGCCCAT 57.390 45.000 0.00 0.00 36.89 4.00
4666 4727 2.173519 ACTGGACAATTTCTGCCCATG 58.826 47.619 0.00 0.00 36.89 3.66
4667 4728 2.225091 ACTGGACAATTTCTGCCCATGA 60.225 45.455 0.00 0.00 36.89 3.07
4668 4729 2.426024 CTGGACAATTTCTGCCCATGAG 59.574 50.000 0.00 0.00 36.89 2.90
4669 4730 1.753073 GGACAATTTCTGCCCATGAGG 59.247 52.381 0.00 0.00 39.47 3.86
4670 4731 2.621407 GGACAATTTCTGCCCATGAGGA 60.621 50.000 0.00 0.00 38.24 3.71
4671 4732 3.091545 GACAATTTCTGCCCATGAGGAA 58.908 45.455 0.00 0.00 38.24 3.36
4672 4733 3.703052 GACAATTTCTGCCCATGAGGAAT 59.297 43.478 0.00 0.00 38.24 3.01
4673 4734 4.098894 ACAATTTCTGCCCATGAGGAATT 58.901 39.130 0.00 0.00 38.24 2.17
4674 4735 4.533311 ACAATTTCTGCCCATGAGGAATTT 59.467 37.500 0.00 0.00 38.24 1.82
4675 4736 5.721000 ACAATTTCTGCCCATGAGGAATTTA 59.279 36.000 0.00 0.00 38.24 1.40
4676 4737 6.213195 ACAATTTCTGCCCATGAGGAATTTAA 59.787 34.615 0.00 0.00 38.24 1.52
4677 4738 6.872585 ATTTCTGCCCATGAGGAATTTAAA 57.127 33.333 0.00 0.00 38.24 1.52
4678 4739 5.920193 TTCTGCCCATGAGGAATTTAAAG 57.080 39.130 0.00 0.00 38.24 1.85
4679 4740 4.934356 TCTGCCCATGAGGAATTTAAAGT 58.066 39.130 0.00 0.00 38.24 2.66
4680 4741 6.073447 TCTGCCCATGAGGAATTTAAAGTA 57.927 37.500 0.00 0.00 38.24 2.24
4681 4742 6.122277 TCTGCCCATGAGGAATTTAAAGTAG 58.878 40.000 0.00 0.00 38.24 2.57
4682 4743 6.069673 TCTGCCCATGAGGAATTTAAAGTAGA 60.070 38.462 0.00 0.00 38.24 2.59
4683 4744 6.489603 TGCCCATGAGGAATTTAAAGTAGAA 58.510 36.000 0.00 0.00 38.24 2.10
4684 4745 7.125391 TGCCCATGAGGAATTTAAAGTAGAAT 58.875 34.615 0.00 0.00 38.24 2.40
4685 4746 7.619302 TGCCCATGAGGAATTTAAAGTAGAATT 59.381 33.333 0.00 0.00 38.24 2.17
4686 4747 8.138074 GCCCATGAGGAATTTAAAGTAGAATTC 58.862 37.037 0.00 0.00 40.07 2.17
4687 4748 9.413734 CCCATGAGGAATTTAAAGTAGAATTCT 57.586 33.333 13.56 13.56 40.43 2.40
4697 4758 9.668497 ATTTAAAGTAGAATTCTTTACCGAGCT 57.332 29.630 14.36 0.00 37.19 4.09
4698 4759 8.699283 TTAAAGTAGAATTCTTTACCGAGCTC 57.301 34.615 14.36 2.73 37.19 4.09
4699 4760 6.532988 AAGTAGAATTCTTTACCGAGCTCT 57.467 37.500 14.36 0.00 0.00 4.09
4700 4761 6.139048 AGTAGAATTCTTTACCGAGCTCTC 57.861 41.667 14.36 0.00 0.00 3.20
4701 4762 5.889289 AGTAGAATTCTTTACCGAGCTCTCT 59.111 40.000 14.36 6.12 0.00 3.10
4702 4763 5.004922 AGAATTCTTTACCGAGCTCTCTG 57.995 43.478 12.85 2.63 0.00 3.35
4703 4764 4.707448 AGAATTCTTTACCGAGCTCTCTGA 59.293 41.667 12.85 0.00 0.00 3.27
4704 4765 5.362430 AGAATTCTTTACCGAGCTCTCTGAT 59.638 40.000 12.85 0.00 0.00 2.90
4705 4766 5.606348 ATTCTTTACCGAGCTCTCTGATT 57.394 39.130 12.85 0.00 0.00 2.57
4706 4767 5.407407 TTCTTTACCGAGCTCTCTGATTT 57.593 39.130 12.85 0.00 0.00 2.17
4707 4768 5.407407 TCTTTACCGAGCTCTCTGATTTT 57.593 39.130 12.85 0.00 0.00 1.82
4708 4769 5.794894 TCTTTACCGAGCTCTCTGATTTTT 58.205 37.500 12.85 0.00 0.00 1.94
4709 4770 5.639506 TCTTTACCGAGCTCTCTGATTTTTG 59.360 40.000 12.85 0.00 0.00 2.44
4710 4771 3.409026 ACCGAGCTCTCTGATTTTTGT 57.591 42.857 12.85 0.00 0.00 2.83
4711 4772 4.537135 ACCGAGCTCTCTGATTTTTGTA 57.463 40.909 12.85 0.00 0.00 2.41
4712 4773 4.894784 ACCGAGCTCTCTGATTTTTGTAA 58.105 39.130 12.85 0.00 0.00 2.41
4713 4774 4.691216 ACCGAGCTCTCTGATTTTTGTAAC 59.309 41.667 12.85 0.00 0.00 2.50
4714 4775 4.690748 CCGAGCTCTCTGATTTTTGTAACA 59.309 41.667 12.85 0.00 0.00 2.41
4715 4776 5.179368 CCGAGCTCTCTGATTTTTGTAACAA 59.821 40.000 12.85 0.00 0.00 2.83
4716 4777 6.128172 CCGAGCTCTCTGATTTTTGTAACAAT 60.128 38.462 12.85 0.00 0.00 2.71
4717 4778 7.064609 CCGAGCTCTCTGATTTTTGTAACAATA 59.935 37.037 12.85 0.00 0.00 1.90
4718 4779 8.607459 CGAGCTCTCTGATTTTTGTAACAATAT 58.393 33.333 12.85 0.00 0.00 1.28
4748 4809 5.534914 CCATATATGGGAGGGGATTTCAA 57.465 43.478 22.31 0.00 44.31 2.69
4749 4810 6.096164 CCATATATGGGAGGGGATTTCAAT 57.904 41.667 22.31 0.00 44.31 2.57
4750 4811 7.224765 CCATATATGGGAGGGGATTTCAATA 57.775 40.000 22.31 0.00 44.31 1.90
4751 4812 7.829869 CCATATATGGGAGGGGATTTCAATAT 58.170 38.462 22.31 0.00 44.31 1.28
4752 4813 8.291745 CCATATATGGGAGGGGATTTCAATATT 58.708 37.037 22.31 0.00 44.31 1.28
4753 4814 9.359653 CATATATGGGAGGGGATTTCAATATTC 57.640 37.037 4.68 0.00 0.00 1.75
4754 4815 4.469469 TGGGAGGGGATTTCAATATTCC 57.531 45.455 0.00 0.00 0.00 3.01
4755 4816 3.796694 TGGGAGGGGATTTCAATATTCCA 59.203 43.478 0.00 0.00 0.00 3.53
4756 4817 4.233989 TGGGAGGGGATTTCAATATTCCAA 59.766 41.667 0.00 0.00 0.00 3.53
4757 4818 4.835056 GGGAGGGGATTTCAATATTCCAAG 59.165 45.833 0.00 0.00 0.00 3.61
4758 4819 5.400189 GGGAGGGGATTTCAATATTCCAAGA 60.400 44.000 0.00 0.00 0.00 3.02
4759 4820 5.536538 GGAGGGGATTTCAATATTCCAAGAC 59.463 44.000 0.00 0.00 0.00 3.01
4760 4821 6.091076 AGGGGATTTCAATATTCCAAGACA 57.909 37.500 0.00 0.00 0.00 3.41
4761 4822 6.686544 AGGGGATTTCAATATTCCAAGACAT 58.313 36.000 0.00 0.00 0.00 3.06
4762 4823 6.552350 AGGGGATTTCAATATTCCAAGACATG 59.448 38.462 0.00 0.00 0.00 3.21
4763 4824 6.218746 GGGATTTCAATATTCCAAGACATGC 58.781 40.000 0.00 0.00 0.00 4.06
4764 4825 6.041296 GGGATTTCAATATTCCAAGACATGCT 59.959 38.462 0.00 0.00 0.00 3.79
4765 4826 6.921857 GGATTTCAATATTCCAAGACATGCTG 59.078 38.462 0.00 0.00 0.00 4.41
4766 4827 5.840243 TTCAATATTCCAAGACATGCTGG 57.160 39.130 0.00 0.00 0.00 4.85
4767 4828 4.858850 TCAATATTCCAAGACATGCTGGT 58.141 39.130 8.49 0.00 0.00 4.00
4768 4829 4.641541 TCAATATTCCAAGACATGCTGGTG 59.358 41.667 8.49 1.31 0.00 4.17
4769 4830 2.885135 ATTCCAAGACATGCTGGTGA 57.115 45.000 8.49 1.42 0.00 4.02
4770 4831 2.655090 TTCCAAGACATGCTGGTGAA 57.345 45.000 8.49 0.00 0.00 3.18
4771 4832 2.189594 TCCAAGACATGCTGGTGAAG 57.810 50.000 8.49 0.00 0.00 3.02
4772 4833 1.699083 TCCAAGACATGCTGGTGAAGA 59.301 47.619 8.49 0.00 0.00 2.87
4773 4834 2.106338 TCCAAGACATGCTGGTGAAGAA 59.894 45.455 8.49 0.00 0.00 2.52
4774 4835 2.886523 CCAAGACATGCTGGTGAAGAAA 59.113 45.455 0.00 0.00 0.00 2.52
4775 4836 3.318839 CCAAGACATGCTGGTGAAGAAAA 59.681 43.478 0.00 0.00 0.00 2.29
4776 4837 4.293415 CAAGACATGCTGGTGAAGAAAAC 58.707 43.478 0.00 0.00 0.00 2.43
4777 4838 3.554934 AGACATGCTGGTGAAGAAAACA 58.445 40.909 0.00 0.00 0.00 2.83
4778 4839 3.953612 AGACATGCTGGTGAAGAAAACAA 59.046 39.130 0.00 0.00 0.00 2.83
4779 4840 4.037208 AGACATGCTGGTGAAGAAAACAAG 59.963 41.667 0.00 0.00 0.00 3.16
4780 4841 3.068590 ACATGCTGGTGAAGAAAACAAGG 59.931 43.478 0.00 0.00 0.00 3.61
4781 4842 1.408702 TGCTGGTGAAGAAAACAAGGC 59.591 47.619 0.00 0.00 0.00 4.35
4782 4843 1.683385 GCTGGTGAAGAAAACAAGGCT 59.317 47.619 0.00 0.00 0.00 4.58
4783 4844 2.544486 GCTGGTGAAGAAAACAAGGCTG 60.544 50.000 0.00 0.00 0.00 4.85
4784 4845 2.951642 CTGGTGAAGAAAACAAGGCTGA 59.048 45.455 0.00 0.00 0.00 4.26
4785 4846 2.951642 TGGTGAAGAAAACAAGGCTGAG 59.048 45.455 0.00 0.00 0.00 3.35
4786 4847 2.952310 GGTGAAGAAAACAAGGCTGAGT 59.048 45.455 0.00 0.00 0.00 3.41
4787 4848 3.381590 GGTGAAGAAAACAAGGCTGAGTT 59.618 43.478 0.00 0.00 0.00 3.01
4788 4849 4.142160 GGTGAAGAAAACAAGGCTGAGTTT 60.142 41.667 11.28 11.28 39.46 2.66
4790 4851 5.869344 GTGAAGAAAACAAGGCTGAGTTTTT 59.131 36.000 23.44 13.92 45.09 1.94
4817 4878 6.048073 TGAACAATCTTTCAGCGTATATGC 57.952 37.500 9.00 9.00 31.68 3.14
4829 4890 3.675225 AGCGTATATGCTGTAATCAAGCG 59.325 43.478 18.70 0.00 45.28 4.68
4830 4891 3.181530 GCGTATATGCTGTAATCAAGCGG 60.182 47.826 9.78 0.00 0.00 5.52
4831 4892 3.987868 CGTATATGCTGTAATCAAGCGGT 59.012 43.478 0.00 0.00 0.00 5.68
4832 4893 4.143326 CGTATATGCTGTAATCAAGCGGTG 60.143 45.833 0.00 0.00 0.00 4.94
4833 4894 0.734889 ATGCTGTAATCAAGCGGTGC 59.265 50.000 0.00 0.00 0.00 5.01
4834 4895 0.321564 TGCTGTAATCAAGCGGTGCT 60.322 50.000 0.00 0.00 42.56 4.40
4835 4896 0.097674 GCTGTAATCAAGCGGTGCTG 59.902 55.000 0.00 0.00 39.62 4.41
4836 4897 1.442769 CTGTAATCAAGCGGTGCTGT 58.557 50.000 0.00 0.00 39.62 4.40
4837 4898 1.806542 CTGTAATCAAGCGGTGCTGTT 59.193 47.619 0.00 0.00 39.62 3.16
4838 4899 1.535028 TGTAATCAAGCGGTGCTGTTG 59.465 47.619 0.00 0.00 39.62 3.33
4839 4900 0.521291 TAATCAAGCGGTGCTGTTGC 59.479 50.000 0.00 0.00 39.62 4.17
4840 4901 2.146073 AATCAAGCGGTGCTGTTGCC 62.146 55.000 0.00 0.00 39.62 4.52
4841 4902 3.289834 CAAGCGGTGCTGTTGCCT 61.290 61.111 0.00 0.00 39.62 4.75
4842 4903 2.519302 AAGCGGTGCTGTTGCCTT 60.519 55.556 0.00 0.00 39.62 4.35
4843 4904 2.127232 AAGCGGTGCTGTTGCCTTT 61.127 52.632 0.00 0.00 39.62 3.11
4844 4905 2.354074 AAGCGGTGCTGTTGCCTTTG 62.354 55.000 0.00 0.00 39.62 2.77
4845 4906 2.844451 GCGGTGCTGTTGCCTTTGA 61.844 57.895 0.00 0.00 38.71 2.69
4846 4907 1.732917 CGGTGCTGTTGCCTTTGAA 59.267 52.632 0.00 0.00 38.71 2.69
4847 4908 0.318107 CGGTGCTGTTGCCTTTGAAG 60.318 55.000 0.00 0.00 38.71 3.02
4848 4909 0.746659 GGTGCTGTTGCCTTTGAAGT 59.253 50.000 0.00 0.00 38.71 3.01
4849 4910 1.536709 GGTGCTGTTGCCTTTGAAGTG 60.537 52.381 0.00 0.00 38.71 3.16
4850 4911 0.102844 TGCTGTTGCCTTTGAAGTGC 59.897 50.000 0.00 0.00 38.71 4.40
4851 4912 0.102844 GCTGTTGCCTTTGAAGTGCA 59.897 50.000 3.74 3.74 32.79 4.57
4852 4913 1.843992 CTGTTGCCTTTGAAGTGCAC 58.156 50.000 9.40 9.40 33.84 4.57
4853 4914 1.134753 CTGTTGCCTTTGAAGTGCACA 59.865 47.619 21.04 0.00 33.84 4.57
4854 4915 1.134753 TGTTGCCTTTGAAGTGCACAG 59.865 47.619 21.04 6.90 33.84 3.66
4855 4916 0.746063 TTGCCTTTGAAGTGCACAGG 59.254 50.000 21.04 17.22 45.46 4.00
4857 4918 1.283793 CCTTTGAAGTGCACAGGCG 59.716 57.895 21.04 1.81 45.35 5.52
4858 4919 1.447317 CCTTTGAAGTGCACAGGCGT 61.447 55.000 21.04 0.00 45.35 5.68
4859 4920 1.225855 CTTTGAAGTGCACAGGCGTA 58.774 50.000 21.04 0.00 45.35 4.42
4860 4921 1.601903 CTTTGAAGTGCACAGGCGTAA 59.398 47.619 21.04 4.45 45.35 3.18
4861 4922 1.225855 TTGAAGTGCACAGGCGTAAG 58.774 50.000 21.04 0.00 45.35 2.34
4862 4923 0.602638 TGAAGTGCACAGGCGTAAGG 60.603 55.000 21.04 0.00 45.35 2.69
4875 4936 3.658351 GCGTAAGGCTTGTTGATACAG 57.342 47.619 10.69 0.00 39.11 2.74
4876 4937 3.259064 GCGTAAGGCTTGTTGATACAGA 58.741 45.455 10.69 0.00 39.11 3.41
4877 4938 3.062234 GCGTAAGGCTTGTTGATACAGAC 59.938 47.826 10.69 0.00 39.11 3.51
4878 4939 3.303495 CGTAAGGCTTGTTGATACAGACG 59.697 47.826 10.69 3.68 35.28 4.18
4879 4940 1.726853 AGGCTTGTTGATACAGACGC 58.273 50.000 0.00 0.00 35.28 5.19
4880 4941 1.001974 AGGCTTGTTGATACAGACGCA 59.998 47.619 0.00 0.00 35.28 5.24
4881 4942 1.804151 GGCTTGTTGATACAGACGCAA 59.196 47.619 0.00 0.00 35.28 4.85
4882 4943 2.412847 GGCTTGTTGATACAGACGCAAC 60.413 50.000 0.00 0.00 41.57 4.17
4887 4948 5.431420 TGTTGATACAGACGCAACATTTT 57.569 34.783 0.00 0.00 44.73 1.82
4888 4949 5.826586 TGTTGATACAGACGCAACATTTTT 58.173 33.333 0.00 0.00 44.73 1.94
4914 4975 8.447924 TCGGGTCTGATATACTAGTAATATGC 57.552 38.462 6.70 0.00 0.00 3.14
4954 5015 9.072294 ACAATTTTCTTCTTTGAAACAGTAACG 57.928 29.630 0.00 0.00 35.91 3.18
4957 5018 8.663771 TTTTCTTCTTTGAAACAGTAACGAAC 57.336 30.769 0.00 0.00 35.91 3.95
4979 5040 1.039233 GTGCTGGGGTGGGATTGATG 61.039 60.000 0.00 0.00 0.00 3.07
5001 5062 5.192927 TGGTAGAAATTTGATCATTCCGCT 58.807 37.500 0.00 0.00 0.00 5.52
5016 5077 5.691305 TCATTCCGCTTTGAGATTTGTTTTG 59.309 36.000 0.00 0.00 0.00 2.44
5017 5078 4.647424 TCCGCTTTGAGATTTGTTTTGT 57.353 36.364 0.00 0.00 0.00 2.83
5042 5103 2.904434 ACCGGTGAAAACAGTAGGAGAT 59.096 45.455 6.12 0.00 0.00 2.75
5063 5127 4.848562 TGCTCCCACTATTGTATACTCG 57.151 45.455 4.17 0.00 0.00 4.18
5072 5136 0.659427 TTGTATACTCGCTCCGTCCG 59.341 55.000 4.17 0.00 0.00 4.79
5073 5137 1.162181 TGTATACTCGCTCCGTCCGG 61.162 60.000 4.17 0.00 0.00 5.14
5074 5138 0.882042 GTATACTCGCTCCGTCCGGA 60.882 60.000 0.00 0.00 42.90 5.14
5076 5140 0.822532 ATACTCGCTCCGTCCGGAAT 60.823 55.000 5.23 0.00 44.66 3.01
5079 5143 0.594284 CTCGCTCCGTCCGGAATTAC 60.594 60.000 5.23 0.00 44.66 1.89
5080 5144 1.033746 TCGCTCCGTCCGGAATTACT 61.034 55.000 5.23 0.00 44.66 2.24
5081 5145 0.179119 CGCTCCGTCCGGAATTACTT 60.179 55.000 5.23 0.00 44.66 2.24
5083 5147 1.405121 GCTCCGTCCGGAATTACTTGT 60.405 52.381 5.23 0.00 44.66 3.16
5084 5148 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5085 5149 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5086 5150 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
5087 5151 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
5088 5152 0.458889 TCCGGAATTACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46
5089 5153 0.458889 CCGGAATTACTTGTCGCGGA 60.459 55.000 6.13 0.00 32.57 5.54
5090 5154 1.352114 CGGAATTACTTGTCGCGGAA 58.648 50.000 6.13 0.00 0.00 4.30
5091 5155 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
5092 5156 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
5093 5157 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
5094 5158 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
5096 5160 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
5097 5161 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
5098 5162 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
5099 5163 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
5100 5164 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
5102 5166 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
5104 5168 4.202172 TGTCGCGGAAATGGATGTATCTAA 60.202 41.667 6.13 0.00 0.00 2.10
5105 5169 4.748102 GTCGCGGAAATGGATGTATCTAAA 59.252 41.667 6.13 0.00 0.00 1.85
5106 5170 5.408604 GTCGCGGAAATGGATGTATCTAAAT 59.591 40.000 6.13 0.00 0.00 1.40
5107 5171 5.408299 TCGCGGAAATGGATGTATCTAAATG 59.592 40.000 6.13 0.00 0.00 2.32
5108 5172 5.179368 CGCGGAAATGGATGTATCTAAATGT 59.821 40.000 0.00 0.00 0.00 2.71
5110 5174 7.064609 CGCGGAAATGGATGTATCTAAATGTAT 59.935 37.037 0.00 0.00 0.00 2.29
5111 5175 8.730680 GCGGAAATGGATGTATCTAAATGTATT 58.269 33.333 0.00 0.00 0.00 1.89
5189 5253 8.451908 AAATTAGCAGAGTATTTACATGTCCC 57.548 34.615 0.00 0.00 0.00 4.46
5190 5254 4.060038 AGCAGAGTATTTACATGTCCCG 57.940 45.455 0.00 0.00 0.00 5.14
5191 5255 3.451178 AGCAGAGTATTTACATGTCCCGT 59.549 43.478 0.00 0.00 0.00 5.28
5192 5256 3.555956 GCAGAGTATTTACATGTCCCGTG 59.444 47.826 0.00 0.00 0.00 4.94
5193 5257 3.555956 CAGAGTATTTACATGTCCCGTGC 59.444 47.826 0.00 0.00 0.00 5.34
5194 5258 3.196901 AGAGTATTTACATGTCCCGTGCA 59.803 43.478 0.00 0.00 0.00 4.57
5195 5259 3.936453 GAGTATTTACATGTCCCGTGCAA 59.064 43.478 0.00 0.00 0.00 4.08
5196 5260 4.328536 AGTATTTACATGTCCCGTGCAAA 58.671 39.130 0.00 0.00 0.00 3.68
5197 5261 4.762765 AGTATTTACATGTCCCGTGCAAAA 59.237 37.500 0.00 0.00 0.00 2.44
5198 5262 4.592485 ATTTACATGTCCCGTGCAAAAA 57.408 36.364 0.00 0.00 0.00 1.94
5257 5321 5.724854 ACAGGAGGCTAACAGGAAACTATAA 59.275 40.000 0.00 0.00 40.21 0.98
5261 5325 6.542735 GGAGGCTAACAGGAAACTATAAAAGG 59.457 42.308 0.00 0.00 40.21 3.11
5297 5361 6.218746 ACAAAGAAGAGATGAAATTGCCAAC 58.781 36.000 0.00 0.00 0.00 3.77
5326 5390 4.997395 CAGCAAGCTCTGGTTTTACTCTAA 59.003 41.667 0.00 0.00 31.85 2.10
5327 5391 5.121454 CAGCAAGCTCTGGTTTTACTCTAAG 59.879 44.000 0.00 0.00 31.85 2.18
5328 5392 5.012148 AGCAAGCTCTGGTTTTACTCTAAGA 59.988 40.000 0.00 0.00 28.96 2.10
5329 5393 5.350091 GCAAGCTCTGGTTTTACTCTAAGAG 59.650 44.000 0.00 0.00 35.37 2.85
5344 5408 4.126524 GAGCATCTACAACCGGGC 57.873 61.111 6.32 0.00 0.00 6.13
5345 5409 1.522569 GAGCATCTACAACCGGGCT 59.477 57.895 6.32 0.81 0.00 5.19
5346 5410 0.107654 GAGCATCTACAACCGGGCTT 60.108 55.000 6.32 0.00 0.00 4.35
5347 5411 0.328258 AGCATCTACAACCGGGCTTT 59.672 50.000 6.32 0.00 0.00 3.51
5348 5412 0.451783 GCATCTACAACCGGGCTTTG 59.548 55.000 6.32 3.70 0.00 2.77
5349 5413 0.451783 CATCTACAACCGGGCTTTGC 59.548 55.000 6.32 0.00 0.00 3.68
5350 5414 0.037590 ATCTACAACCGGGCTTTGCA 59.962 50.000 6.32 0.00 0.00 4.08
5351 5415 0.179015 TCTACAACCGGGCTTTGCAA 60.179 50.000 6.32 0.00 0.00 4.08
5352 5416 0.671251 CTACAACCGGGCTTTGCAAA 59.329 50.000 12.14 12.14 0.00 3.68
5353 5417 1.272212 CTACAACCGGGCTTTGCAAAT 59.728 47.619 13.23 0.00 0.00 2.32
5354 5418 0.033366 ACAACCGGGCTTTGCAAATC 59.967 50.000 13.23 8.56 0.00 2.17
5355 5419 0.670239 CAACCGGGCTTTGCAAATCC 60.670 55.000 21.33 21.33 0.00 3.01
5356 5420 2.153547 AACCGGGCTTTGCAAATCCG 62.154 55.000 30.79 30.79 40.32 4.18
5357 5421 2.181525 CGGGCTTTGCAAATCCGG 59.818 61.111 30.41 26.12 37.35 5.14
5358 5422 2.125552 GGGCTTTGCAAATCCGGC 60.126 61.111 22.27 17.67 0.00 6.13
5359 5423 2.125552 GGCTTTGCAAATCCGGCC 60.126 61.111 20.41 20.41 0.00 6.13
5360 5424 2.125552 GCTTTGCAAATCCGGCCC 60.126 61.111 13.23 0.00 0.00 5.80
5361 5425 2.578664 CTTTGCAAATCCGGCCCC 59.421 61.111 13.23 0.00 0.00 5.80
5362 5426 1.984026 CTTTGCAAATCCGGCCCCT 60.984 57.895 13.23 0.00 0.00 4.79
5363 5427 1.948721 CTTTGCAAATCCGGCCCCTC 61.949 60.000 13.23 0.00 0.00 4.30
5364 5428 2.721803 TTTGCAAATCCGGCCCCTCA 62.722 55.000 8.05 0.00 0.00 3.86
5365 5429 2.362375 GCAAATCCGGCCCCTCAA 60.362 61.111 0.00 0.00 0.00 3.02
5366 5430 1.981853 GCAAATCCGGCCCCTCAAA 60.982 57.895 0.00 0.00 0.00 2.69
5367 5431 1.890174 CAAATCCGGCCCCTCAAAC 59.110 57.895 0.00 0.00 0.00 2.93
5368 5432 1.677633 AAATCCGGCCCCTCAAACG 60.678 57.895 0.00 0.00 0.00 3.60
5369 5433 2.420466 AAATCCGGCCCCTCAAACGT 62.420 55.000 0.00 0.00 0.00 3.99
5370 5434 2.814913 AATCCGGCCCCTCAAACGTC 62.815 60.000 0.00 0.00 0.00 4.34
5376 5440 4.367023 CCCTCAAACGTCCGCGGA 62.367 66.667 27.28 27.28 43.45 5.54
5377 5441 3.110178 CCTCAAACGTCCGCGGAC 61.110 66.667 41.75 41.75 43.45 4.79
5407 5471 2.430921 GTCCGCAGACAGTGACCG 60.431 66.667 0.00 0.00 42.99 4.79
5408 5472 3.680786 TCCGCAGACAGTGACCGG 61.681 66.667 0.00 0.00 40.25 5.28
5409 5473 3.991051 CCGCAGACAGTGACCGGT 61.991 66.667 6.92 6.92 34.56 5.28
5410 5474 2.430921 CGCAGACAGTGACCGGTC 60.431 66.667 28.17 28.17 36.20 4.79
5411 5475 2.734591 GCAGACAGTGACCGGTCA 59.265 61.111 33.23 33.23 38.14 4.02
5419 5483 3.457484 TGACCGGTCACGCCTTAA 58.543 55.556 33.23 8.16 39.22 1.85
5420 5484 1.747145 TGACCGGTCACGCCTTAAA 59.253 52.632 33.23 7.33 39.22 1.52
5421 5485 0.322322 TGACCGGTCACGCCTTAAAT 59.678 50.000 33.23 0.00 39.22 1.40
5422 5486 1.270947 TGACCGGTCACGCCTTAAATT 60.271 47.619 33.23 0.00 39.22 1.82
5423 5487 2.028294 TGACCGGTCACGCCTTAAATTA 60.028 45.455 33.23 5.69 39.22 1.40
5424 5488 2.606272 GACCGGTCACGCCTTAAATTAG 59.394 50.000 29.75 0.00 39.22 1.73
5425 5489 1.329599 CCGGTCACGCCTTAAATTAGC 59.670 52.381 0.00 0.00 39.22 3.09
5426 5490 1.329599 CGGTCACGCCTTAAATTAGCC 59.670 52.381 0.00 0.00 34.25 3.93
5427 5491 2.361789 GGTCACGCCTTAAATTAGCCA 58.638 47.619 0.00 0.00 0.00 4.75
5428 5492 2.096980 GGTCACGCCTTAAATTAGCCAC 59.903 50.000 0.00 0.00 0.00 5.01
5429 5493 3.007635 GTCACGCCTTAAATTAGCCACT 58.992 45.455 0.00 0.00 0.00 4.00
5430 5494 3.439129 GTCACGCCTTAAATTAGCCACTT 59.561 43.478 0.00 0.00 0.00 3.16
5431 5495 4.076394 TCACGCCTTAAATTAGCCACTTT 58.924 39.130 0.00 0.00 0.00 2.66
5432 5496 4.083003 TCACGCCTTAAATTAGCCACTTTG 60.083 41.667 0.00 0.00 0.00 2.77
5433 5497 3.179048 CGCCTTAAATTAGCCACTTTGC 58.821 45.455 0.00 0.00 0.00 3.68
5434 5498 3.366883 CGCCTTAAATTAGCCACTTTGCA 60.367 43.478 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.158132 AGATCGATCTTAGAATGGAGTAGTACA 58.842 37.037 22.32 0.00 31.97 2.90
1 2 8.556213 AGATCGATCTTAGAATGGAGTAGTAC 57.444 38.462 22.32 0.00 31.97 2.73
5 6 9.616156 GGTATAGATCGATCTTAGAATGGAGTA 57.384 37.037 31.55 10.64 38.32 2.59
6 7 8.333235 AGGTATAGATCGATCTTAGAATGGAGT 58.667 37.037 31.55 6.91 38.32 3.85
7 8 8.746052 AGGTATAGATCGATCTTAGAATGGAG 57.254 38.462 31.55 0.00 38.32 3.86
8 9 9.616156 GTAGGTATAGATCGATCTTAGAATGGA 57.384 37.037 31.55 12.63 38.32 3.41
9 10 9.397280 TGTAGGTATAGATCGATCTTAGAATGG 57.603 37.037 31.55 0.00 38.32 3.16
11 12 9.961264 TGTGTAGGTATAGATCGATCTTAGAAT 57.039 33.333 31.55 20.76 38.32 2.40
12 13 9.217278 GTGTGTAGGTATAGATCGATCTTAGAA 57.783 37.037 31.55 15.25 38.32 2.10
13 14 8.373220 TGTGTGTAGGTATAGATCGATCTTAGA 58.627 37.037 31.55 15.62 38.32 2.10
14 15 8.444715 GTGTGTGTAGGTATAGATCGATCTTAG 58.555 40.741 31.55 0.00 38.32 2.18
15 16 7.935210 TGTGTGTGTAGGTATAGATCGATCTTA 59.065 37.037 31.55 19.68 38.32 2.10
16 17 6.771267 TGTGTGTGTAGGTATAGATCGATCTT 59.229 38.462 31.55 20.60 38.32 2.40
17 18 6.205076 GTGTGTGTGTAGGTATAGATCGATCT 59.795 42.308 29.58 29.58 40.86 2.75
18 19 6.017357 TGTGTGTGTGTAGGTATAGATCGATC 60.017 42.308 17.91 17.91 0.00 3.69
19 20 5.826208 TGTGTGTGTGTAGGTATAGATCGAT 59.174 40.000 0.00 0.00 0.00 3.59
20 21 5.065602 GTGTGTGTGTGTAGGTATAGATCGA 59.934 44.000 0.00 0.00 0.00 3.59
21 22 5.163693 TGTGTGTGTGTGTAGGTATAGATCG 60.164 44.000 0.00 0.00 0.00 3.69
22 23 6.203808 TGTGTGTGTGTGTAGGTATAGATC 57.796 41.667 0.00 0.00 0.00 2.75
23 24 6.183360 GGATGTGTGTGTGTGTAGGTATAGAT 60.183 42.308 0.00 0.00 0.00 1.98
24 25 5.126545 GGATGTGTGTGTGTGTAGGTATAGA 59.873 44.000 0.00 0.00 0.00 1.98
25 26 5.105513 TGGATGTGTGTGTGTGTAGGTATAG 60.106 44.000 0.00 0.00 0.00 1.31
26 27 4.773149 TGGATGTGTGTGTGTGTAGGTATA 59.227 41.667 0.00 0.00 0.00 1.47
27 28 3.580895 TGGATGTGTGTGTGTGTAGGTAT 59.419 43.478 0.00 0.00 0.00 2.73
28 29 2.966516 TGGATGTGTGTGTGTGTAGGTA 59.033 45.455 0.00 0.00 0.00 3.08
29 30 1.765904 TGGATGTGTGTGTGTGTAGGT 59.234 47.619 0.00 0.00 0.00 3.08
30 31 2.542020 TGGATGTGTGTGTGTGTAGG 57.458 50.000 0.00 0.00 0.00 3.18
31 32 3.202097 TGTTGGATGTGTGTGTGTGTAG 58.798 45.455 0.00 0.00 0.00 2.74
32 33 3.118592 TCTGTTGGATGTGTGTGTGTGTA 60.119 43.478 0.00 0.00 0.00 2.90
33 34 2.016318 CTGTTGGATGTGTGTGTGTGT 58.984 47.619 0.00 0.00 0.00 3.72
34 35 2.287769 TCTGTTGGATGTGTGTGTGTG 58.712 47.619 0.00 0.00 0.00 3.82
35 36 2.170397 TCTCTGTTGGATGTGTGTGTGT 59.830 45.455 0.00 0.00 0.00 3.72
36 37 2.837498 TCTCTGTTGGATGTGTGTGTG 58.163 47.619 0.00 0.00 0.00 3.82
37 38 3.206150 GTTCTCTGTTGGATGTGTGTGT 58.794 45.455 0.00 0.00 0.00 3.72
38 39 3.205338 TGTTCTCTGTTGGATGTGTGTG 58.795 45.455 0.00 0.00 0.00 3.82
39 40 3.558931 TGTTCTCTGTTGGATGTGTGT 57.441 42.857 0.00 0.00 0.00 3.72
40 41 3.879295 AGTTGTTCTCTGTTGGATGTGTG 59.121 43.478 0.00 0.00 0.00 3.82
41 42 3.879295 CAGTTGTTCTCTGTTGGATGTGT 59.121 43.478 0.00 0.00 0.00 3.72
42 43 3.304257 GCAGTTGTTCTCTGTTGGATGTG 60.304 47.826 0.00 0.00 35.60 3.21
43 44 2.880890 GCAGTTGTTCTCTGTTGGATGT 59.119 45.455 0.00 0.00 35.60 3.06
44 45 2.880268 TGCAGTTGTTCTCTGTTGGATG 59.120 45.455 0.00 0.00 35.60 3.51
45 46 3.213206 TGCAGTTGTTCTCTGTTGGAT 57.787 42.857 0.00 0.00 35.60 3.41
46 47 2.708216 TGCAGTTGTTCTCTGTTGGA 57.292 45.000 0.00 0.00 35.60 3.53
47 48 3.996150 ATTGCAGTTGTTCTCTGTTGG 57.004 42.857 0.00 0.00 35.60 3.77
48 49 4.923893 TCAATTGCAGTTGTTCTCTGTTG 58.076 39.130 19.91 0.00 35.60 3.33
49 50 5.779529 ATCAATTGCAGTTGTTCTCTGTT 57.220 34.783 19.91 0.00 35.60 3.16
50 51 6.569226 GCTTATCAATTGCAGTTGTTCTCTGT 60.569 38.462 19.91 3.87 35.60 3.41
51 52 5.798934 GCTTATCAATTGCAGTTGTTCTCTG 59.201 40.000 19.91 9.10 36.18 3.35
52 53 5.709164 AGCTTATCAATTGCAGTTGTTCTCT 59.291 36.000 19.91 10.11 0.00 3.10
53 54 5.798934 CAGCTTATCAATTGCAGTTGTTCTC 59.201 40.000 19.91 8.32 0.00 2.87
54 55 5.474532 TCAGCTTATCAATTGCAGTTGTTCT 59.525 36.000 19.91 9.86 0.00 3.01
55 56 5.570589 GTCAGCTTATCAATTGCAGTTGTTC 59.429 40.000 19.91 7.44 0.00 3.18
56 57 5.009911 TGTCAGCTTATCAATTGCAGTTGTT 59.990 36.000 19.91 14.80 0.00 2.83
57 58 4.520111 TGTCAGCTTATCAATTGCAGTTGT 59.480 37.500 19.91 10.96 0.00 3.32
58 59 5.050644 TGTCAGCTTATCAATTGCAGTTG 57.949 39.130 15.31 15.31 0.00 3.16
59 60 5.706916 CTTGTCAGCTTATCAATTGCAGTT 58.293 37.500 0.00 0.00 0.00 3.16
60 61 4.380233 GCTTGTCAGCTTATCAATTGCAGT 60.380 41.667 0.00 0.00 43.51 4.40
61 62 4.103357 GCTTGTCAGCTTATCAATTGCAG 58.897 43.478 0.00 0.00 43.51 4.41
62 63 3.119388 GGCTTGTCAGCTTATCAATTGCA 60.119 43.478 0.00 0.00 46.44 4.08
63 64 3.119388 TGGCTTGTCAGCTTATCAATTGC 60.119 43.478 0.00 0.00 46.44 3.56
64 65 4.082625 TGTGGCTTGTCAGCTTATCAATTG 60.083 41.667 0.00 0.00 46.44 2.32
65 66 4.081406 TGTGGCTTGTCAGCTTATCAATT 58.919 39.130 0.00 0.00 46.44 2.32
66 67 3.689347 TGTGGCTTGTCAGCTTATCAAT 58.311 40.909 0.00 0.00 46.44 2.57
67 68 3.138884 TGTGGCTTGTCAGCTTATCAA 57.861 42.857 0.00 0.00 46.44 2.57
68 69 2.857186 TGTGGCTTGTCAGCTTATCA 57.143 45.000 0.00 0.00 46.44 2.15
69 70 3.691118 TGAATGTGGCTTGTCAGCTTATC 59.309 43.478 0.00 0.00 46.44 1.75
70 71 3.689347 TGAATGTGGCTTGTCAGCTTAT 58.311 40.909 0.00 0.00 46.44 1.73
71 72 3.076621 CTGAATGTGGCTTGTCAGCTTA 58.923 45.455 0.00 0.00 46.44 3.09
72 73 1.884579 CTGAATGTGGCTTGTCAGCTT 59.115 47.619 0.00 0.00 46.44 3.74
73 74 1.072806 TCTGAATGTGGCTTGTCAGCT 59.927 47.619 0.00 0.00 46.44 4.24
74 75 1.527034 TCTGAATGTGGCTTGTCAGC 58.473 50.000 0.00 0.00 46.52 4.26
75 76 2.486982 CCTTCTGAATGTGGCTTGTCAG 59.513 50.000 0.00 0.00 39.09 3.51
76 77 2.507484 CCTTCTGAATGTGGCTTGTCA 58.493 47.619 0.00 0.00 0.00 3.58
77 78 1.200948 GCCTTCTGAATGTGGCTTGTC 59.799 52.381 10.85 0.00 41.92 3.18
78 79 1.251251 GCCTTCTGAATGTGGCTTGT 58.749 50.000 10.85 0.00 41.92 3.16
79 80 0.529378 GGCCTTCTGAATGTGGCTTG 59.471 55.000 15.94 0.00 44.36 4.01
80 81 0.112995 TGGCCTTCTGAATGTGGCTT 59.887 50.000 15.94 0.00 44.36 4.35
81 82 0.323178 CTGGCCTTCTGAATGTGGCT 60.323 55.000 15.94 0.00 44.36 4.75
82 83 0.610232 ACTGGCCTTCTGAATGTGGC 60.610 55.000 3.32 9.90 44.22 5.01
83 84 1.004044 AGACTGGCCTTCTGAATGTGG 59.996 52.381 3.32 0.00 0.00 4.17
84 85 2.082231 CAGACTGGCCTTCTGAATGTG 58.918 52.381 23.58 3.01 42.81 3.21
85 86 1.612726 GCAGACTGGCCTTCTGAATGT 60.613 52.381 29.13 6.94 42.81 2.71
86 87 1.093159 GCAGACTGGCCTTCTGAATG 58.907 55.000 29.13 11.58 42.81 2.67
87 88 0.694771 TGCAGACTGGCCTTCTGAAT 59.305 50.000 29.13 0.00 42.81 2.57
88 89 0.473755 TTGCAGACTGGCCTTCTGAA 59.526 50.000 29.13 20.85 42.81 3.02
89 90 0.250467 GTTGCAGACTGGCCTTCTGA 60.250 55.000 29.13 16.31 42.81 3.27
90 91 0.250640 AGTTGCAGACTGGCCTTCTG 60.251 55.000 23.60 23.60 43.01 3.02
91 92 2.149530 AGTTGCAGACTGGCCTTCT 58.850 52.632 3.32 2.41 37.17 2.85
92 93 4.809070 AGTTGCAGACTGGCCTTC 57.191 55.556 3.32 0.00 37.17 3.46
104 105 2.175184 CTAGGCGTGTGTGCAGTTGC 62.175 60.000 0.00 0.00 42.50 4.17
105 106 0.880278 ACTAGGCGTGTGTGCAGTTG 60.880 55.000 0.00 0.00 36.28 3.16
106 107 0.179056 AACTAGGCGTGTGTGCAGTT 60.179 50.000 0.00 0.00 36.28 3.16
107 108 0.179056 AAACTAGGCGTGTGTGCAGT 60.179 50.000 0.00 0.00 36.28 4.40
108 109 1.790755 TAAACTAGGCGTGTGTGCAG 58.209 50.000 0.00 0.00 36.28 4.41
109 110 2.242047 TTAAACTAGGCGTGTGTGCA 57.758 45.000 0.00 0.00 36.28 4.57
110 111 3.000727 AGATTAAACTAGGCGTGTGTGC 58.999 45.455 0.00 0.00 0.00 4.57
111 112 3.303495 CGAGATTAAACTAGGCGTGTGTG 59.697 47.826 0.00 0.00 0.00 3.82
112 113 3.057033 ACGAGATTAAACTAGGCGTGTGT 60.057 43.478 0.00 0.00 0.00 3.72
113 114 3.508762 ACGAGATTAAACTAGGCGTGTG 58.491 45.455 0.00 0.00 0.00 3.82
114 115 3.863142 ACGAGATTAAACTAGGCGTGT 57.137 42.857 0.00 0.00 0.00 4.49
115 116 3.239941 CGAACGAGATTAAACTAGGCGTG 59.760 47.826 0.00 0.00 0.00 5.34
116 117 3.432782 CGAACGAGATTAAACTAGGCGT 58.567 45.455 0.00 0.00 0.00 5.68
117 118 2.787680 CCGAACGAGATTAAACTAGGCG 59.212 50.000 0.00 1.89 0.00 5.52
118 119 3.121544 CCCGAACGAGATTAAACTAGGC 58.878 50.000 0.00 0.00 0.00 3.93
119 120 4.382345 ACCCGAACGAGATTAAACTAGG 57.618 45.455 0.00 0.00 0.00 3.02
120 121 5.061808 CACAACCCGAACGAGATTAAACTAG 59.938 44.000 0.00 0.00 0.00 2.57
121 122 4.925054 CACAACCCGAACGAGATTAAACTA 59.075 41.667 0.00 0.00 0.00 2.24
122 123 3.744426 CACAACCCGAACGAGATTAAACT 59.256 43.478 0.00 0.00 0.00 2.66
123 124 3.742369 TCACAACCCGAACGAGATTAAAC 59.258 43.478 0.00 0.00 0.00 2.01
132 133 2.806244 AGAGAAAATCACAACCCGAACG 59.194 45.455 0.00 0.00 0.00 3.95
170 171 2.909006 AGAAAGTGGCATTCTCTGAGGA 59.091 45.455 4.59 0.00 31.61 3.71
184 185 2.464157 AGCCTCTTTCCGAGAAAGTG 57.536 50.000 19.32 17.37 42.62 3.16
194 195 1.538950 CAGCACCAGAAAGCCTCTTTC 59.461 52.381 10.42 10.42 29.07 2.62
209 210 0.606401 TGCCTTTCTAGGTGCAGCAC 60.606 55.000 17.97 17.97 44.00 4.40
292 294 4.522789 AGGGGCACTAAAAACAACAGTATG 59.477 41.667 0.00 0.00 46.00 2.39
311 313 3.788227 TGCTATATTGTAGGCAAGGGG 57.212 47.619 0.00 0.00 38.10 4.79
313 315 5.308014 TGTGATGCTATATTGTAGGCAAGG 58.692 41.667 0.00 0.00 38.10 3.61
341 343 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
342 344 2.935201 ACTACCTAGCGACGACTACAAG 59.065 50.000 0.00 0.00 0.00 3.16
344 346 2.167281 AGACTACCTAGCGACGACTACA 59.833 50.000 0.00 0.00 0.00 2.74
347 349 2.797792 CGTAGACTACCTAGCGACGACT 60.798 54.545 7.05 0.00 33.84 4.18
348 350 1.520590 CGTAGACTACCTAGCGACGAC 59.479 57.143 7.05 0.00 33.84 4.34
349 351 1.405463 TCGTAGACTACCTAGCGACGA 59.595 52.381 7.05 0.00 36.28 4.20
350 352 1.845266 TCGTAGACTACCTAGCGACG 58.155 55.000 7.05 0.00 33.56 5.12
351 353 2.286563 GGTTCGTAGACTACCTAGCGAC 59.713 54.545 7.05 0.00 34.32 5.19
352 354 2.169352 AGGTTCGTAGACTACCTAGCGA 59.831 50.000 7.05 0.00 40.42 4.93
353 355 2.287373 CAGGTTCGTAGACTACCTAGCG 59.713 54.545 7.05 0.00 40.24 4.26
354 356 2.617774 CCAGGTTCGTAGACTACCTAGC 59.382 54.545 7.05 5.14 40.24 3.42
355 357 4.148128 TCCAGGTTCGTAGACTACCTAG 57.852 50.000 7.05 0.00 40.24 3.02
356 358 4.080129 ACATCCAGGTTCGTAGACTACCTA 60.080 45.833 7.05 0.00 40.24 3.08
357 359 3.288964 CATCCAGGTTCGTAGACTACCT 58.711 50.000 7.05 0.00 42.92 3.08
358 360 3.022406 ACATCCAGGTTCGTAGACTACC 58.978 50.000 7.05 0.00 34.32 3.18
359 361 6.388435 AATACATCCAGGTTCGTAGACTAC 57.612 41.667 2.24 2.24 34.32 2.73
360 362 7.414222 AAAATACATCCAGGTTCGTAGACTA 57.586 36.000 0.00 0.00 34.32 2.59
361 363 5.934402 AAATACATCCAGGTTCGTAGACT 57.066 39.130 0.00 0.00 34.32 3.24
362 364 6.980051 AAAAATACATCCAGGTTCGTAGAC 57.020 37.500 0.00 0.00 34.32 2.59
475 478 9.436957 ACTCCAAAAGACATATACAAACTGTAG 57.563 33.333 0.00 0.00 36.14 2.74
617 624 1.070134 TGAGAAAGCACAGTAAGGCGT 59.930 47.619 0.00 0.00 34.54 5.68
726 733 8.000171 AGGAAATCTACTCCTCATCTATCTCT 58.000 38.462 0.00 0.00 39.16 3.10
1008 1050 5.701290 CAGAAGGAAGTAACTCACCGAAATT 59.299 40.000 0.00 0.00 0.00 1.82
1125 1167 9.565213 CCAAGCTATAGACAATTTCAAGAAAAG 57.435 33.333 3.21 0.00 33.56 2.27
1128 1170 6.095440 GCCCAAGCTATAGACAATTTCAAGAA 59.905 38.462 3.21 0.00 35.50 2.52
1200 1243 6.195600 ACATCCTTCCCAACAAGTAGTTTA 57.804 37.500 0.00 0.00 38.74 2.01
1440 1483 4.546570 ACTTTGACGGCATAAGCTTTTTC 58.453 39.130 3.20 0.00 41.70 2.29
1596 1639 5.104610 AGTGCCTGTGATATCTTTCTCATGT 60.105 40.000 3.98 0.00 0.00 3.21
1740 1783 5.356470 GGAAAAAGAGTTCTCTGGATCATGG 59.644 44.000 2.96 0.00 0.00 3.66
1868 1911 9.764363 TTATTCTAGCCACATTAACAGTATCTG 57.236 33.333 0.00 0.00 37.52 2.90
1941 1984 2.485659 TCAAATGATGGCTCCTCTCCT 58.514 47.619 0.00 0.00 0.00 3.69
2016 2059 1.985159 TGCCTGGAGTTAATGTCACCT 59.015 47.619 0.00 0.00 0.00 4.00
2047 2090 4.384056 CCAGGTAAGCTACTTGATGATGG 58.616 47.826 6.91 0.00 37.93 3.51
2192 2235 2.296190 CCTTTGCCCTGGTCAAGTTTAC 59.704 50.000 0.00 0.00 0.00 2.01
2222 2265 6.831868 TGGTAAAACTATAAAGCATCCTTCCC 59.168 38.462 0.00 0.00 0.00 3.97
2563 2606 3.186909 CCTCATCTGTCGCGAACAATAA 58.813 45.455 12.06 0.83 37.45 1.40
3202 3254 5.957771 AACTTAGGCTTCATGGTATCAGA 57.042 39.130 0.00 0.00 0.00 3.27
3500 3552 5.744666 TGTACTACAAAAAGACACAAGCC 57.255 39.130 0.00 0.00 0.00 4.35
3534 3586 8.145316 TGTTTGTATTAACTTCGCAGTTTAGT 57.855 30.769 5.61 0.00 40.66 2.24
3707 3766 3.676049 CGTAAATAGCTGCACTCCTCACA 60.676 47.826 1.02 0.00 0.00 3.58
3708 3767 2.860735 CGTAAATAGCTGCACTCCTCAC 59.139 50.000 1.02 0.00 0.00 3.51
3709 3768 2.758423 TCGTAAATAGCTGCACTCCTCA 59.242 45.455 1.02 0.00 0.00 3.86
4096 4155 6.597280 GCAAGATCAAACATAAGTCTCCTCTT 59.403 38.462 0.00 0.00 0.00 2.85
4312 4371 5.220605 CCGCATATATGTCATCATCAGCTTG 60.221 44.000 14.14 0.00 35.70 4.01
4315 4374 4.033702 CACCGCATATATGTCATCATCAGC 59.966 45.833 14.14 0.00 35.70 4.26
4316 4375 4.569564 CCACCGCATATATGTCATCATCAG 59.430 45.833 14.14 0.00 35.70 2.90
4319 4378 3.877559 CCCACCGCATATATGTCATCAT 58.122 45.455 14.14 0.00 38.00 2.45
4354 4413 3.866651 AGAGGTCAGCATGTAACATGAC 58.133 45.455 0.00 6.86 41.03 3.06
4446 4505 4.923871 TGTTCTTGCGATAGACTGAGTTTC 59.076 41.667 0.00 0.00 39.76 2.78
4450 4509 3.728221 CGATGTTCTTGCGATAGACTGAG 59.272 47.826 0.00 0.00 39.76 3.35
4459 4518 1.507562 TTCTTGCGATGTTCTTGCGA 58.492 45.000 0.00 0.00 37.02 5.10
4460 4519 2.236690 CTTTCTTGCGATGTTCTTGCG 58.763 47.619 0.00 0.00 37.02 4.85
4461 4520 3.273919 ACTTTCTTGCGATGTTCTTGC 57.726 42.857 0.00 0.00 34.52 4.01
4462 4521 5.050091 ACTGTACTTTCTTGCGATGTTCTTG 60.050 40.000 0.00 0.00 0.00 3.02
4463 4522 5.050091 CACTGTACTTTCTTGCGATGTTCTT 60.050 40.000 0.00 0.00 0.00 2.52
4464 4523 4.449068 CACTGTACTTTCTTGCGATGTTCT 59.551 41.667 0.00 0.00 0.00 3.01
4465 4524 4.447724 TCACTGTACTTTCTTGCGATGTTC 59.552 41.667 0.00 0.00 0.00 3.18
4466 4525 4.211374 GTCACTGTACTTTCTTGCGATGTT 59.789 41.667 0.00 0.00 0.00 2.71
4467 4526 3.741344 GTCACTGTACTTTCTTGCGATGT 59.259 43.478 0.00 0.00 0.00 3.06
4468 4527 3.740832 TGTCACTGTACTTTCTTGCGATG 59.259 43.478 0.00 0.00 0.00 3.84
4469 4528 3.990092 TGTCACTGTACTTTCTTGCGAT 58.010 40.909 0.00 0.00 0.00 4.58
4476 4535 5.593010 ACTCAGACTTGTCACTGTACTTTC 58.407 41.667 3.49 0.00 35.84 2.62
4538 4597 4.517453 AGGCAACAAACATTAACGCTTAGA 59.483 37.500 0.00 0.00 41.41 2.10
4539 4598 4.794169 AGGCAACAAACATTAACGCTTAG 58.206 39.130 0.00 0.00 41.41 2.18
4540 4599 4.839668 AGGCAACAAACATTAACGCTTA 57.160 36.364 0.00 0.00 41.41 3.09
4549 4608 3.632145 ACTTCTTCGAAGGCAACAAACAT 59.368 39.130 24.37 0.00 41.41 2.71
4550 4609 3.013921 ACTTCTTCGAAGGCAACAAACA 58.986 40.909 24.37 0.00 41.41 2.83
4551 4610 3.363178 CACTTCTTCGAAGGCAACAAAC 58.637 45.455 24.37 0.00 41.41 2.93
4563 4622 3.369147 CCTTACATCTGTGCACTTCTTCG 59.631 47.826 19.41 4.31 0.00 3.79
4564 4623 3.126000 GCCTTACATCTGTGCACTTCTTC 59.874 47.826 19.41 0.00 0.00 2.87
4568 4627 2.816087 CAAGCCTTACATCTGTGCACTT 59.184 45.455 19.41 0.00 0.00 3.16
4569 4628 2.224621 ACAAGCCTTACATCTGTGCACT 60.225 45.455 19.41 0.00 0.00 4.40
4570 4629 2.154462 ACAAGCCTTACATCTGTGCAC 58.846 47.619 10.75 10.75 0.00 4.57
4571 4630 2.553602 CAACAAGCCTTACATCTGTGCA 59.446 45.455 0.00 0.00 0.00 4.57
4572 4631 2.813754 TCAACAAGCCTTACATCTGTGC 59.186 45.455 0.00 0.00 0.00 4.57
4573 4632 5.643348 TGTATCAACAAGCCTTACATCTGTG 59.357 40.000 0.00 0.00 30.91 3.66
4633 4694 8.321353 AGAAATTGTCCAGTATCAAGTGACATA 58.679 33.333 0.00 0.00 0.00 2.29
4634 4695 7.120285 CAGAAATTGTCCAGTATCAAGTGACAT 59.880 37.037 0.00 0.00 0.00 3.06
4635 4696 6.427853 CAGAAATTGTCCAGTATCAAGTGACA 59.572 38.462 0.00 0.00 0.00 3.58
4636 4697 6.621596 GCAGAAATTGTCCAGTATCAAGTGAC 60.622 42.308 0.00 0.00 0.00 3.67
4637 4698 5.412594 GCAGAAATTGTCCAGTATCAAGTGA 59.587 40.000 0.00 0.00 0.00 3.41
4638 4699 5.392380 GGCAGAAATTGTCCAGTATCAAGTG 60.392 44.000 0.00 0.00 0.00 3.16
4639 4700 4.702131 GGCAGAAATTGTCCAGTATCAAGT 59.298 41.667 0.00 0.00 0.00 3.16
4640 4701 5.240713 GGCAGAAATTGTCCAGTATCAAG 57.759 43.478 0.00 0.00 0.00 3.02
4650 4711 2.726821 TCCTCATGGGCAGAAATTGTC 58.273 47.619 0.00 0.00 34.39 3.18
4651 4712 2.905415 TCCTCATGGGCAGAAATTGT 57.095 45.000 0.00 0.00 34.39 2.71
4652 4713 4.748277 AATTCCTCATGGGCAGAAATTG 57.252 40.909 0.00 0.00 34.39 2.32
4653 4714 6.872585 TTAAATTCCTCATGGGCAGAAATT 57.127 33.333 0.00 0.00 34.39 1.82
4654 4715 6.441604 ACTTTAAATTCCTCATGGGCAGAAAT 59.558 34.615 0.00 0.00 34.39 2.17
4655 4716 5.779771 ACTTTAAATTCCTCATGGGCAGAAA 59.220 36.000 0.00 0.00 34.39 2.52
4656 4717 5.332743 ACTTTAAATTCCTCATGGGCAGAA 58.667 37.500 0.00 0.00 34.39 3.02
4657 4718 4.934356 ACTTTAAATTCCTCATGGGCAGA 58.066 39.130 0.00 0.00 34.39 4.26
4658 4719 6.122277 TCTACTTTAAATTCCTCATGGGCAG 58.878 40.000 0.00 0.00 34.39 4.85
4659 4720 6.073447 TCTACTTTAAATTCCTCATGGGCA 57.927 37.500 0.00 0.00 34.39 5.36
4660 4721 7.588497 ATTCTACTTTAAATTCCTCATGGGC 57.412 36.000 0.00 0.00 34.39 5.36
4661 4722 9.413734 AGAATTCTACTTTAAATTCCTCATGGG 57.586 33.333 6.06 0.00 40.95 4.00
4671 4732 9.668497 AGCTCGGTAAAGAATTCTACTTTAAAT 57.332 29.630 8.75 0.00 40.11 1.40
4672 4733 9.148104 GAGCTCGGTAAAGAATTCTACTTTAAA 57.852 33.333 8.75 0.00 40.11 1.52
4673 4734 8.529476 AGAGCTCGGTAAAGAATTCTACTTTAA 58.471 33.333 8.75 0.00 40.11 1.52
4674 4735 8.064336 AGAGCTCGGTAAAGAATTCTACTTTA 57.936 34.615 8.75 1.10 38.34 1.85
4675 4736 6.937392 AGAGCTCGGTAAAGAATTCTACTTT 58.063 36.000 8.75 2.14 40.13 2.66
4676 4737 6.378848 AGAGAGCTCGGTAAAGAATTCTACTT 59.621 38.462 8.75 2.90 34.09 2.24
4677 4738 5.889289 AGAGAGCTCGGTAAAGAATTCTACT 59.111 40.000 8.75 1.73 34.09 2.57
4678 4739 5.974751 CAGAGAGCTCGGTAAAGAATTCTAC 59.025 44.000 8.75 4.01 34.09 2.59
4679 4740 5.886474 TCAGAGAGCTCGGTAAAGAATTCTA 59.114 40.000 8.75 0.00 34.09 2.10
4680 4741 4.707448 TCAGAGAGCTCGGTAAAGAATTCT 59.293 41.667 8.37 0.88 34.09 2.40
4681 4742 5.000012 TCAGAGAGCTCGGTAAAGAATTC 58.000 43.478 8.37 0.00 34.09 2.17
4682 4743 5.606348 ATCAGAGAGCTCGGTAAAGAATT 57.394 39.130 8.37 0.00 34.09 2.17
4683 4744 5.606348 AATCAGAGAGCTCGGTAAAGAAT 57.394 39.130 8.37 0.00 34.09 2.40
4684 4745 5.407407 AAATCAGAGAGCTCGGTAAAGAA 57.593 39.130 8.37 0.00 34.09 2.52
4685 4746 5.407407 AAAATCAGAGAGCTCGGTAAAGA 57.593 39.130 8.37 2.60 34.09 2.52
4686 4747 5.409826 ACAAAAATCAGAGAGCTCGGTAAAG 59.590 40.000 8.37 0.00 34.09 1.85
4687 4748 5.305585 ACAAAAATCAGAGAGCTCGGTAAA 58.694 37.500 8.37 0.00 34.09 2.01
4688 4749 4.894784 ACAAAAATCAGAGAGCTCGGTAA 58.105 39.130 8.37 0.00 34.09 2.85
4689 4750 4.537135 ACAAAAATCAGAGAGCTCGGTA 57.463 40.909 8.37 0.00 34.09 4.02
4690 4751 3.409026 ACAAAAATCAGAGAGCTCGGT 57.591 42.857 8.37 0.00 34.09 4.69
4691 4752 4.690748 TGTTACAAAAATCAGAGAGCTCGG 59.309 41.667 8.37 2.24 34.09 4.63
4692 4753 5.845985 TGTTACAAAAATCAGAGAGCTCG 57.154 39.130 8.37 0.00 34.09 5.03
4727 4788 9.359653 GAATATTGAAATCCCCTCCCATATATG 57.640 37.037 5.68 5.68 0.00 1.78
4728 4789 8.514504 GGAATATTGAAATCCCCTCCCATATAT 58.485 37.037 0.00 0.00 0.00 0.86
4729 4790 7.467192 TGGAATATTGAAATCCCCTCCCATATA 59.533 37.037 0.00 0.00 32.01 0.86
4730 4791 6.280165 TGGAATATTGAAATCCCCTCCCATAT 59.720 38.462 0.00 0.00 32.01 1.78
4731 4792 5.619152 TGGAATATTGAAATCCCCTCCCATA 59.381 40.000 0.00 0.00 32.01 2.74
4732 4793 4.423275 TGGAATATTGAAATCCCCTCCCAT 59.577 41.667 0.00 0.00 32.01 4.00
4733 4794 3.796694 TGGAATATTGAAATCCCCTCCCA 59.203 43.478 0.00 0.00 32.01 4.37
4734 4795 4.469469 TGGAATATTGAAATCCCCTCCC 57.531 45.455 0.00 0.00 32.01 4.30
4735 4796 5.536538 GTCTTGGAATATTGAAATCCCCTCC 59.463 44.000 0.00 0.00 32.01 4.30
4736 4797 6.129179 TGTCTTGGAATATTGAAATCCCCTC 58.871 40.000 0.00 0.00 32.01 4.30
4737 4798 6.091076 TGTCTTGGAATATTGAAATCCCCT 57.909 37.500 0.00 0.00 32.01 4.79
4738 4799 6.739565 GCATGTCTTGGAATATTGAAATCCCC 60.740 42.308 0.00 0.00 32.01 4.81
4739 4800 6.041296 AGCATGTCTTGGAATATTGAAATCCC 59.959 38.462 0.00 0.00 32.01 3.85
4740 4801 6.921857 CAGCATGTCTTGGAATATTGAAATCC 59.078 38.462 0.00 0.00 0.00 3.01
4741 4802 6.921857 CCAGCATGTCTTGGAATATTGAAATC 59.078 38.462 7.10 0.00 0.00 2.17
4742 4803 6.381994 ACCAGCATGTCTTGGAATATTGAAAT 59.618 34.615 16.59 0.00 0.00 2.17
4743 4804 5.716228 ACCAGCATGTCTTGGAATATTGAAA 59.284 36.000 16.59 0.00 0.00 2.69
4744 4805 5.125900 CACCAGCATGTCTTGGAATATTGAA 59.874 40.000 16.59 0.00 0.00 2.69
4745 4806 4.641541 CACCAGCATGTCTTGGAATATTGA 59.358 41.667 16.59 0.00 0.00 2.57
4746 4807 4.641541 TCACCAGCATGTCTTGGAATATTG 59.358 41.667 16.59 6.99 0.00 1.90
4747 4808 4.858850 TCACCAGCATGTCTTGGAATATT 58.141 39.130 16.59 0.00 0.00 1.28
4748 4809 4.508551 TCACCAGCATGTCTTGGAATAT 57.491 40.909 16.59 0.00 0.00 1.28
4749 4810 3.998913 TCACCAGCATGTCTTGGAATA 57.001 42.857 16.59 2.87 0.00 1.75
4750 4811 2.885135 TCACCAGCATGTCTTGGAAT 57.115 45.000 16.59 0.00 0.00 3.01
4751 4812 2.106338 TCTTCACCAGCATGTCTTGGAA 59.894 45.455 16.59 5.80 0.00 3.53
4752 4813 1.699083 TCTTCACCAGCATGTCTTGGA 59.301 47.619 16.59 0.00 0.00 3.53
4753 4814 2.189594 TCTTCACCAGCATGTCTTGG 57.810 50.000 10.33 10.33 0.00 3.61
4754 4815 4.202040 TGTTTTCTTCACCAGCATGTCTTG 60.202 41.667 0.00 0.00 0.00 3.02
4755 4816 3.953612 TGTTTTCTTCACCAGCATGTCTT 59.046 39.130 0.00 0.00 0.00 3.01
4756 4817 3.554934 TGTTTTCTTCACCAGCATGTCT 58.445 40.909 0.00 0.00 0.00 3.41
4757 4818 3.988379 TGTTTTCTTCACCAGCATGTC 57.012 42.857 0.00 0.00 0.00 3.06
4758 4819 3.068590 CCTTGTTTTCTTCACCAGCATGT 59.931 43.478 0.00 0.00 0.00 3.21
4759 4820 3.645884 CCTTGTTTTCTTCACCAGCATG 58.354 45.455 0.00 0.00 0.00 4.06
4760 4821 2.036346 GCCTTGTTTTCTTCACCAGCAT 59.964 45.455 0.00 0.00 0.00 3.79
4761 4822 1.408702 GCCTTGTTTTCTTCACCAGCA 59.591 47.619 0.00 0.00 0.00 4.41
4762 4823 1.683385 AGCCTTGTTTTCTTCACCAGC 59.317 47.619 0.00 0.00 0.00 4.85
4763 4824 2.951642 TCAGCCTTGTTTTCTTCACCAG 59.048 45.455 0.00 0.00 0.00 4.00
4764 4825 2.951642 CTCAGCCTTGTTTTCTTCACCA 59.048 45.455 0.00 0.00 0.00 4.17
4765 4826 2.952310 ACTCAGCCTTGTTTTCTTCACC 59.048 45.455 0.00 0.00 0.00 4.02
4766 4827 4.639135 AACTCAGCCTTGTTTTCTTCAC 57.361 40.909 0.00 0.00 0.00 3.18
4767 4828 5.659440 AAAACTCAGCCTTGTTTTCTTCA 57.341 34.783 5.75 0.00 40.89 3.02
4791 4852 8.282592 GCATATACGCTGAAAGATTGTTCATAA 58.717 33.333 0.00 0.00 36.92 1.90
4792 4853 7.657354 AGCATATACGCTGAAAGATTGTTCATA 59.343 33.333 0.00 0.00 41.85 2.15
4793 4854 6.484643 AGCATATACGCTGAAAGATTGTTCAT 59.515 34.615 0.00 0.00 41.85 2.57
4794 4855 5.817296 AGCATATACGCTGAAAGATTGTTCA 59.183 36.000 0.00 0.00 41.85 3.18
4795 4856 6.292389 AGCATATACGCTGAAAGATTGTTC 57.708 37.500 0.00 0.00 41.85 3.18
4807 4868 3.675225 CGCTTGATTACAGCATATACGCT 59.325 43.478 0.00 0.00 45.21 5.07
4808 4869 3.181530 CCGCTTGATTACAGCATATACGC 60.182 47.826 0.00 0.00 0.00 4.42
4809 4870 3.987868 ACCGCTTGATTACAGCATATACG 59.012 43.478 0.00 0.00 0.00 3.06
4810 4871 4.377431 GCACCGCTTGATTACAGCATATAC 60.377 45.833 0.00 0.00 0.00 1.47
4811 4872 3.745975 GCACCGCTTGATTACAGCATATA 59.254 43.478 0.00 0.00 0.00 0.86
4812 4873 2.549754 GCACCGCTTGATTACAGCATAT 59.450 45.455 0.00 0.00 0.00 1.78
4813 4874 1.939934 GCACCGCTTGATTACAGCATA 59.060 47.619 0.00 0.00 0.00 3.14
4814 4875 0.734889 GCACCGCTTGATTACAGCAT 59.265 50.000 0.00 0.00 0.00 3.79
4815 4876 0.321564 AGCACCGCTTGATTACAGCA 60.322 50.000 0.00 0.00 33.89 4.41
4816 4877 0.097674 CAGCACCGCTTGATTACAGC 59.902 55.000 0.00 0.00 36.40 4.40
4817 4878 1.442769 ACAGCACCGCTTGATTACAG 58.557 50.000 0.00 0.00 36.40 2.74
4818 4879 1.535028 CAACAGCACCGCTTGATTACA 59.465 47.619 0.00 0.00 36.40 2.41
4819 4880 1.729149 GCAACAGCACCGCTTGATTAC 60.729 52.381 0.00 0.00 36.40 1.89
4820 4881 0.521291 GCAACAGCACCGCTTGATTA 59.479 50.000 0.00 0.00 36.40 1.75
4821 4882 1.286880 GCAACAGCACCGCTTGATT 59.713 52.632 0.00 0.00 36.40 2.57
4822 4883 2.629656 GGCAACAGCACCGCTTGAT 61.630 57.895 0.00 0.00 36.40 2.57
4823 4884 3.286751 GGCAACAGCACCGCTTGA 61.287 61.111 0.00 0.00 36.40 3.02
4824 4885 2.354074 AAAGGCAACAGCACCGCTTG 62.354 55.000 0.00 0.00 36.40 4.01
4825 4886 2.127232 AAAGGCAACAGCACCGCTT 61.127 52.632 0.00 0.00 36.40 4.68
4826 4887 2.519302 AAAGGCAACAGCACCGCT 60.519 55.556 0.00 0.00 40.77 5.52
4827 4888 2.348605 TTCAAAGGCAACAGCACCGC 62.349 55.000 0.00 0.00 41.41 5.68
4828 4889 0.318107 CTTCAAAGGCAACAGCACCG 60.318 55.000 0.00 0.00 41.41 4.94
4829 4890 0.746659 ACTTCAAAGGCAACAGCACC 59.253 50.000 0.00 0.00 41.41 5.01
4830 4891 1.843992 CACTTCAAAGGCAACAGCAC 58.156 50.000 0.00 0.00 41.41 4.40
4831 4892 0.102844 GCACTTCAAAGGCAACAGCA 59.897 50.000 0.00 0.00 41.41 4.41
4832 4893 0.102844 TGCACTTCAAAGGCAACAGC 59.897 50.000 4.19 0.00 41.41 4.40
4833 4894 1.134753 TGTGCACTTCAAAGGCAACAG 59.865 47.619 19.41 0.00 35.20 3.16
4834 4895 1.134753 CTGTGCACTTCAAAGGCAACA 59.865 47.619 19.41 0.00 35.20 3.33
4835 4896 1.536709 CCTGTGCACTTCAAAGGCAAC 60.537 52.381 19.41 0.00 43.00 4.17
4836 4897 0.746063 CCTGTGCACTTCAAAGGCAA 59.254 50.000 19.41 0.00 43.00 4.52
4837 4898 2.417978 CCTGTGCACTTCAAAGGCA 58.582 52.632 19.41 0.00 43.00 4.75
4840 4901 1.225855 TACGCCTGTGCACTTCAAAG 58.774 50.000 19.41 6.26 37.32 2.77
4841 4902 1.601903 CTTACGCCTGTGCACTTCAAA 59.398 47.619 19.41 4.30 37.32 2.69
4842 4903 1.225855 CTTACGCCTGTGCACTTCAA 58.774 50.000 19.41 0.00 37.32 2.69
4843 4904 0.602638 CCTTACGCCTGTGCACTTCA 60.603 55.000 19.41 0.00 37.32 3.02
4844 4905 1.912371 GCCTTACGCCTGTGCACTTC 61.912 60.000 19.41 5.97 37.32 3.01
4845 4906 1.966451 GCCTTACGCCTGTGCACTT 60.966 57.895 19.41 0.00 37.32 3.16
4846 4907 2.358737 GCCTTACGCCTGTGCACT 60.359 61.111 19.41 0.00 37.32 4.40
4847 4908 1.966451 AAGCCTTACGCCTGTGCAC 60.966 57.895 10.75 10.75 38.78 4.57
4848 4909 1.965930 CAAGCCTTACGCCTGTGCA 60.966 57.895 0.00 0.00 38.78 4.57
4849 4910 1.515521 AACAAGCCTTACGCCTGTGC 61.516 55.000 0.00 0.00 41.43 4.57
4850 4911 0.238289 CAACAAGCCTTACGCCTGTG 59.762 55.000 0.00 0.00 41.43 3.66
4851 4912 0.107831 TCAACAAGCCTTACGCCTGT 59.892 50.000 0.00 0.00 44.26 4.00
4852 4913 1.453155 ATCAACAAGCCTTACGCCTG 58.547 50.000 0.00 0.00 38.78 4.85
4853 4914 2.027561 TGTATCAACAAGCCTTACGCCT 60.028 45.455 0.00 0.00 38.78 5.52
4854 4915 2.351726 CTGTATCAACAAGCCTTACGCC 59.648 50.000 0.00 0.00 38.78 5.68
4855 4916 3.062234 GTCTGTATCAACAAGCCTTACGC 59.938 47.826 0.00 0.00 34.49 4.42
4856 4917 3.303495 CGTCTGTATCAACAAGCCTTACG 59.697 47.826 0.00 0.00 34.49 3.18
4857 4918 3.062234 GCGTCTGTATCAACAAGCCTTAC 59.938 47.826 0.00 0.00 34.49 2.34
4858 4919 3.259064 GCGTCTGTATCAACAAGCCTTA 58.741 45.455 0.00 0.00 34.49 2.69
4859 4920 2.076863 GCGTCTGTATCAACAAGCCTT 58.923 47.619 0.00 0.00 34.49 4.35
4860 4921 1.001974 TGCGTCTGTATCAACAAGCCT 59.998 47.619 0.00 0.00 34.49 4.58
4861 4922 1.438651 TGCGTCTGTATCAACAAGCC 58.561 50.000 0.00 0.00 34.49 4.35
4862 4923 2.223144 TGTTGCGTCTGTATCAACAAGC 59.777 45.455 4.76 0.00 44.62 4.01
4888 4949 8.900781 GCATATTACTAGTATATCAGACCCGAA 58.099 37.037 2.79 0.00 0.00 4.30
4889 4950 7.501559 GGCATATTACTAGTATATCAGACCCGA 59.498 40.741 2.79 0.00 0.00 5.14
4890 4951 7.284716 TGGCATATTACTAGTATATCAGACCCG 59.715 40.741 2.79 0.00 0.00 5.28
4891 4952 8.414778 GTGGCATATTACTAGTATATCAGACCC 58.585 40.741 2.79 0.00 0.00 4.46
4892 4953 9.191479 AGTGGCATATTACTAGTATATCAGACC 57.809 37.037 2.79 1.32 0.00 3.85
4901 4962 9.682465 CCAGTATCTAGTGGCATATTACTAGTA 57.318 37.037 0.00 0.00 44.20 1.82
4902 4963 8.391699 TCCAGTATCTAGTGGCATATTACTAGT 58.608 37.037 0.00 0.00 44.66 2.57
4903 4964 8.679100 GTCCAGTATCTAGTGGCATATTACTAG 58.321 40.741 6.25 10.33 44.66 2.57
4904 4965 8.168058 TGTCCAGTATCTAGTGGCATATTACTA 58.832 37.037 6.25 0.00 44.66 1.82
4905 4966 7.010771 TGTCCAGTATCTAGTGGCATATTACT 58.989 38.462 6.25 0.00 44.66 2.24
4906 4967 7.228314 TGTCCAGTATCTAGTGGCATATTAC 57.772 40.000 6.25 0.32 44.66 1.89
4907 4968 7.849322 TTGTCCAGTATCTAGTGGCATATTA 57.151 36.000 6.25 0.00 44.66 0.98
4908 4969 6.747414 TTGTCCAGTATCTAGTGGCATATT 57.253 37.500 6.25 0.00 44.66 1.28
4909 4970 6.942163 ATTGTCCAGTATCTAGTGGCATAT 57.058 37.500 6.25 0.00 44.66 1.78
4914 4975 8.043710 AGAAGAAAATTGTCCAGTATCTAGTGG 58.956 37.037 4.91 4.91 46.05 4.00
4954 5015 1.978617 CCCACCCCAGCACATGTTC 60.979 63.158 0.00 0.00 0.00 3.18
4957 5018 1.000739 AATCCCACCCCAGCACATG 59.999 57.895 0.00 0.00 0.00 3.21
4979 5040 5.757850 AGCGGAATGATCAAATTTCTACC 57.242 39.130 0.00 0.00 0.00 3.18
5001 5062 7.063544 CACCGGTAAAACAAAACAAATCTCAAA 59.936 33.333 6.87 0.00 0.00 2.69
5016 5077 4.815846 TCCTACTGTTTTCACCGGTAAAAC 59.184 41.667 27.56 27.56 43.77 2.43
5017 5078 5.033589 TCCTACTGTTTTCACCGGTAAAA 57.966 39.130 6.87 1.23 0.00 1.52
5042 5103 3.005472 GCGAGTATACAATAGTGGGAGCA 59.995 47.826 5.50 0.00 0.00 4.26
5052 5113 1.266175 CGGACGGAGCGAGTATACAAT 59.734 52.381 5.50 0.00 0.00 2.71
5055 5116 0.882042 TCCGGACGGAGCGAGTATAC 60.882 60.000 9.76 0.00 39.76 1.47
5063 5127 1.287425 CAAGTAATTCCGGACGGAGC 58.713 55.000 13.64 6.15 46.06 4.70
5072 5136 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
5073 5137 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
5074 5138 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
5076 5140 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
5079 5143 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
5080 5144 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
5081 5145 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
5083 5147 4.594123 TTAGATACATCCATTTCCGCGA 57.406 40.909 8.23 0.00 0.00 5.87
5084 5148 5.179368 ACATTTAGATACATCCATTTCCGCG 59.821 40.000 0.00 0.00 0.00 6.46
5085 5149 6.560253 ACATTTAGATACATCCATTTCCGC 57.440 37.500 0.00 0.00 0.00 5.54
5131 5195 9.081204 CCCATCATCCTGAATTATTTGTCATAA 57.919 33.333 0.00 0.00 0.00 1.90
5132 5196 8.447200 TCCCATCATCCTGAATTATTTGTCATA 58.553 33.333 0.00 0.00 0.00 2.15
5133 5197 7.299896 TCCCATCATCCTGAATTATTTGTCAT 58.700 34.615 0.00 0.00 0.00 3.06
5134 5198 6.671605 TCCCATCATCCTGAATTATTTGTCA 58.328 36.000 0.00 0.00 0.00 3.58
5135 5199 7.587037 TTCCCATCATCCTGAATTATTTGTC 57.413 36.000 0.00 0.00 0.00 3.18
5136 5200 9.833179 ATATTCCCATCATCCTGAATTATTTGT 57.167 29.630 0.00 0.00 0.00 2.83
5145 5209 9.466497 GCTAATTTAATATTCCCATCATCCTGA 57.534 33.333 0.00 0.00 0.00 3.86
5146 5210 9.246670 TGCTAATTTAATATTCCCATCATCCTG 57.753 33.333 0.00 0.00 0.00 3.86
5147 5211 9.471702 CTGCTAATTTAATATTCCCATCATCCT 57.528 33.333 0.00 0.00 0.00 3.24
5148 5212 9.466497 TCTGCTAATTTAATATTCCCATCATCC 57.534 33.333 0.00 0.00 0.00 3.51
5222 5286 2.183679 AGCCTCCTGTACCTCTTTGAG 58.816 52.381 0.00 0.00 0.00 3.02
5234 5298 4.762289 ATAGTTTCCTGTTAGCCTCCTG 57.238 45.455 0.00 0.00 0.00 3.86
5240 5304 9.445878 AACTACCTTTTATAGTTTCCTGTTAGC 57.554 33.333 0.00 0.00 39.34 3.09
5257 5321 7.742767 TCTTCTTTGTAGGCTTAACTACCTTT 58.257 34.615 0.00 0.00 42.04 3.11
5261 5325 8.251721 TCATCTCTTCTTTGTAGGCTTAACTAC 58.748 37.037 0.00 0.00 42.83 2.73
5269 5333 6.032717 GCAATTTCATCTCTTCTTTGTAGGC 58.967 40.000 0.00 0.00 0.00 3.93
5274 5338 6.218019 TGTTGGCAATTTCATCTCTTCTTTG 58.782 36.000 1.92 0.00 0.00 2.77
5297 5361 3.655276 AACCAGAGCTTGCTGAATTTG 57.345 42.857 0.00 0.00 38.14 2.32
5326 5390 0.978146 AGCCCGGTTGTAGATGCTCT 60.978 55.000 0.00 0.00 0.00 4.09
5327 5391 0.107654 AAGCCCGGTTGTAGATGCTC 60.108 55.000 0.00 0.00 0.00 4.26
5328 5392 0.328258 AAAGCCCGGTTGTAGATGCT 59.672 50.000 0.00 0.00 0.00 3.79
5329 5393 0.451783 CAAAGCCCGGTTGTAGATGC 59.548 55.000 0.00 0.00 0.00 3.91
5330 5394 0.451783 GCAAAGCCCGGTTGTAGATG 59.548 55.000 0.00 0.00 0.00 2.90
5331 5395 0.037590 TGCAAAGCCCGGTTGTAGAT 59.962 50.000 0.00 0.00 0.00 1.98
5332 5396 0.179015 TTGCAAAGCCCGGTTGTAGA 60.179 50.000 0.00 0.00 0.00 2.59
5333 5397 0.671251 TTTGCAAAGCCCGGTTGTAG 59.329 50.000 8.05 0.00 0.00 2.74
5334 5398 1.271102 GATTTGCAAAGCCCGGTTGTA 59.729 47.619 16.51 0.00 0.00 2.41
5335 5399 0.033366 GATTTGCAAAGCCCGGTTGT 59.967 50.000 16.51 0.00 0.00 3.32
5336 5400 0.670239 GGATTTGCAAAGCCCGGTTG 60.670 55.000 31.70 0.00 38.50 3.77
5337 5401 1.671166 GGATTTGCAAAGCCCGGTT 59.329 52.632 31.70 7.06 38.50 4.44
5338 5402 2.635443 CGGATTTGCAAAGCCCGGT 61.635 57.895 34.24 10.56 41.30 5.28
5339 5403 2.181525 CGGATTTGCAAAGCCCGG 59.818 61.111 34.24 21.03 41.30 5.73
5340 5404 2.181525 CCGGATTTGCAAAGCCCG 59.818 61.111 34.24 33.03 41.30 6.13
5341 5405 2.125552 GCCGGATTTGCAAAGCCC 60.126 61.111 34.24 25.83 41.30 5.19
5342 5406 2.125552 GGCCGGATTTGCAAAGCC 60.126 61.111 31.90 31.90 40.96 4.35
5343 5407 2.125552 GGGCCGGATTTGCAAAGC 60.126 61.111 18.95 18.95 0.00 3.51
5344 5408 1.948721 GAGGGGCCGGATTTGCAAAG 61.949 60.000 18.19 4.91 0.00 2.77
5345 5409 1.981853 GAGGGGCCGGATTTGCAAA 60.982 57.895 15.44 15.44 0.00 3.68
5346 5410 2.362375 GAGGGGCCGGATTTGCAA 60.362 61.111 5.05 0.00 0.00 4.08
5347 5411 2.721803 TTTGAGGGGCCGGATTTGCA 62.722 55.000 5.05 0.00 0.00 4.08
5348 5412 1.981853 TTTGAGGGGCCGGATTTGC 60.982 57.895 5.05 0.00 0.00 3.68
5349 5413 1.890174 GTTTGAGGGGCCGGATTTG 59.110 57.895 5.05 0.00 0.00 2.32
5350 5414 1.677633 CGTTTGAGGGGCCGGATTT 60.678 57.895 5.05 0.00 0.00 2.17
5351 5415 2.045340 CGTTTGAGGGGCCGGATT 60.045 61.111 5.05 0.00 0.00 3.01
5352 5416 3.325201 GACGTTTGAGGGGCCGGAT 62.325 63.158 5.05 0.00 0.00 4.18
5353 5417 4.011517 GACGTTTGAGGGGCCGGA 62.012 66.667 5.05 0.00 0.00 5.14
5359 5423 4.367023 TCCGCGGACGTTTGAGGG 62.367 66.667 27.28 0.00 37.70 4.30
5360 5424 3.110178 GTCCGCGGACGTTTGAGG 61.110 66.667 39.77 3.67 37.70 3.86
5387 5451 2.016704 GTCACTGTCTGCGGACACG 61.017 63.158 24.54 20.66 46.19 4.49
5388 5452 1.664965 GGTCACTGTCTGCGGACAC 60.665 63.158 24.54 14.27 46.19 3.67
5390 5454 2.430921 CGGTCACTGTCTGCGGAC 60.431 66.667 19.20 19.20 42.42 4.79
5391 5455 3.680786 CCGGTCACTGTCTGCGGA 61.681 66.667 0.00 0.00 29.37 5.54
5392 5456 3.916392 GACCGGTCACTGTCTGCGG 62.916 68.421 29.75 0.00 33.10 5.69
5393 5457 2.430921 GACCGGTCACTGTCTGCG 60.431 66.667 29.75 0.00 0.00 5.18
5394 5458 2.734591 TGACCGGTCACTGTCTGC 59.265 61.111 33.23 5.07 34.14 4.26
5402 5466 0.322322 ATTTAAGGCGTGACCGGTCA 59.678 50.000 33.23 33.23 46.52 4.02
5403 5467 1.445871 AATTTAAGGCGTGACCGGTC 58.554 50.000 28.17 28.17 46.52 4.79
5404 5468 2.624636 CTAATTTAAGGCGTGACCGGT 58.375 47.619 6.92 6.92 46.52 5.28
5405 5469 1.329599 GCTAATTTAAGGCGTGACCGG 59.670 52.381 0.00 0.00 46.52 5.28
5406 5470 1.329599 GGCTAATTTAAGGCGTGACCG 59.670 52.381 0.00 0.00 46.52 4.79
5407 5471 2.096980 GTGGCTAATTTAAGGCGTGACC 59.903 50.000 0.00 0.00 44.67 4.02
5408 5472 3.007635 AGTGGCTAATTTAAGGCGTGAC 58.992 45.455 0.00 0.00 44.67 3.67
5409 5473 3.343941 AGTGGCTAATTTAAGGCGTGA 57.656 42.857 0.00 0.00 44.67 4.35
5410 5474 4.165779 CAAAGTGGCTAATTTAAGGCGTG 58.834 43.478 0.00 0.00 44.67 5.34
5411 5475 3.366985 GCAAAGTGGCTAATTTAAGGCGT 60.367 43.478 0.00 0.00 44.67 5.68
5412 5476 3.179048 GCAAAGTGGCTAATTTAAGGCG 58.821 45.455 0.00 0.00 44.67 5.52
5413 5477 4.186856 TGCAAAGTGGCTAATTTAAGGC 57.813 40.909 0.00 0.00 42.19 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.