Multiple sequence alignment - TraesCS4D01G022300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G022300 chr4D 100.000 3400 0 0 1 3400 9392936 9389537 0.000000e+00 6279.0
1 TraesCS4D01G022300 chr4D 94.286 70 4 0 2581 2650 9390286 9390217 1.290000e-19 108.0
2 TraesCS4D01G022300 chr4D 94.286 70 4 0 2651 2720 9390356 9390287 1.290000e-19 108.0
3 TraesCS4D01G022300 chr4B 92.641 992 49 11 851 1821 17470237 17469249 0.000000e+00 1406.0
4 TraesCS4D01G022300 chr4B 87.220 892 69 26 1786 2650 17469251 17468378 0.000000e+00 974.0
5 TraesCS4D01G022300 chr4B 91.910 581 39 5 220 797 17470823 17470248 0.000000e+00 806.0
6 TraesCS4D01G022300 chr4B 89.758 537 45 4 2651 3187 17468447 17467921 0.000000e+00 678.0
7 TraesCS4D01G022300 chr4B 84.375 160 8 1 3204 3363 17467853 17467711 1.270000e-29 141.0
8 TraesCS4D01G022300 chr4B 100.000 45 0 0 2375 2419 17483937 17483893 2.170000e-12 84.2
9 TraesCS4D01G022300 chr4A 91.851 589 29 2 2830 3400 594122698 594123285 0.000000e+00 804.0
10 TraesCS4D01G022300 chr1A 88.119 101 10 2 757 857 565993489 565993391 5.960000e-23 119.0
11 TraesCS4D01G022300 chr1A 83.158 95 12 2 756 850 429490193 429490103 2.170000e-12 84.2
12 TraesCS4D01G022300 chr3A 86.275 102 13 1 749 849 485607043 485606942 3.590000e-20 110.0
13 TraesCS4D01G022300 chr3A 85.437 103 14 1 749 850 485530565 485530463 4.640000e-19 106.0
14 TraesCS4D01G022300 chr1B 86.869 99 9 2 752 850 446634169 446634075 1.290000e-19 108.0
15 TraesCS4D01G022300 chr2D 85.437 103 14 1 752 853 102942674 102942572 4.640000e-19 106.0
16 TraesCS4D01G022300 chr3B 76.757 185 39 4 3215 3397 477665965 477665783 2.160000e-17 100.0
17 TraesCS4D01G022300 chr6D 84.314 102 15 1 749 850 392280597 392280697 7.760000e-17 99.0
18 TraesCS4D01G022300 chr6A 83.333 102 16 1 749 850 538105506 538105606 3.610000e-15 93.5
19 TraesCS4D01G022300 chr1D 83.158 95 12 2 756 850 332217503 332217413 2.170000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G022300 chr4D 9389537 9392936 3399 True 2165 6279 96.190667 1 3400 3 chr4D.!!$R1 3399
1 TraesCS4D01G022300 chr4B 17467711 17470823 3112 True 801 1406 89.180800 220 3363 5 chr4B.!!$R2 3143
2 TraesCS4D01G022300 chr4A 594122698 594123285 587 False 804 804 91.851000 2830 3400 1 chr4A.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.036388 CTAAGCCTCGAACAAGCCCA 60.036 55.0 0.0 0.0 0.0 5.36 F
1839 1896 0.034670 GAAATCCCACAGGCAGAGCT 60.035 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2019 0.037326 TTCACTCACCGGCTGCTTAG 60.037 55.0 0.00 0.00 0.0 2.18 R
2981 3066 0.607620 GCTCATGGAGGCTAGGCTAG 59.392 60.0 20.27 17.33 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.701956 AAAATCAGTGGTGCCTTAATCG 57.298 40.909 0.00 0.00 0.00 3.34
23 24 3.350219 AATCAGTGGTGCCTTAATCGT 57.650 42.857 0.00 0.00 0.00 3.73
24 25 2.380084 TCAGTGGTGCCTTAATCGTC 57.620 50.000 0.00 0.00 0.00 4.20
25 26 0.999406 CAGTGGTGCCTTAATCGTCG 59.001 55.000 0.00 0.00 0.00 5.12
26 27 0.892755 AGTGGTGCCTTAATCGTCGA 59.107 50.000 0.00 0.00 0.00 4.20
27 28 0.997196 GTGGTGCCTTAATCGTCGAC 59.003 55.000 5.18 5.18 0.00 4.20
28 29 0.604073 TGGTGCCTTAATCGTCGACA 59.396 50.000 17.16 3.13 0.00 4.35
29 30 1.278238 GGTGCCTTAATCGTCGACAG 58.722 55.000 17.16 8.67 0.00 3.51
30 31 0.645868 GTGCCTTAATCGTCGACAGC 59.354 55.000 17.16 6.64 0.00 4.40
31 32 0.530744 TGCCTTAATCGTCGACAGCT 59.469 50.000 17.16 0.73 0.00 4.24
32 33 0.924090 GCCTTAATCGTCGACAGCTG 59.076 55.000 17.16 13.48 0.00 4.24
33 34 0.924090 CCTTAATCGTCGACAGCTGC 59.076 55.000 15.27 5.81 0.00 5.25
34 35 1.629013 CTTAATCGTCGACAGCTGCA 58.371 50.000 15.27 0.00 0.00 4.41
35 36 1.992667 CTTAATCGTCGACAGCTGCAA 59.007 47.619 15.27 0.00 0.00 4.08
36 37 1.346365 TAATCGTCGACAGCTGCAAC 58.654 50.000 15.27 8.62 0.00 4.17
37 38 0.319900 AATCGTCGACAGCTGCAACT 60.320 50.000 15.27 0.00 0.00 3.16
38 39 0.526211 ATCGTCGACAGCTGCAACTA 59.474 50.000 15.27 1.95 0.00 2.24
39 40 0.109735 TCGTCGACAGCTGCAACTAG 60.110 55.000 15.27 1.25 0.00 2.57
40 41 0.387367 CGTCGACAGCTGCAACTAGT 60.387 55.000 15.27 0.00 0.00 2.57
41 42 1.135774 CGTCGACAGCTGCAACTAGTA 60.136 52.381 15.27 0.00 0.00 1.82
42 43 2.251893 GTCGACAGCTGCAACTAGTAC 58.748 52.381 15.27 0.00 0.00 2.73
43 44 1.135774 TCGACAGCTGCAACTAGTACG 60.136 52.381 15.27 6.14 0.00 3.67
44 45 1.401148 CGACAGCTGCAACTAGTACGT 60.401 52.381 15.27 0.00 0.00 3.57
45 46 2.673833 GACAGCTGCAACTAGTACGTT 58.326 47.619 15.27 0.00 0.00 3.99
46 47 3.057734 GACAGCTGCAACTAGTACGTTT 58.942 45.455 15.27 0.00 0.00 3.60
47 48 3.057734 ACAGCTGCAACTAGTACGTTTC 58.942 45.455 15.27 0.00 0.00 2.78
48 49 3.243771 ACAGCTGCAACTAGTACGTTTCT 60.244 43.478 15.27 0.00 0.00 2.52
49 50 4.022589 ACAGCTGCAACTAGTACGTTTCTA 60.023 41.667 15.27 0.00 0.00 2.10
50 51 4.323868 CAGCTGCAACTAGTACGTTTCTAC 59.676 45.833 0.00 0.00 0.00 2.59
51 52 4.022589 AGCTGCAACTAGTACGTTTCTACA 60.023 41.667 1.02 0.00 0.00 2.74
52 53 4.682860 GCTGCAACTAGTACGTTTCTACAA 59.317 41.667 0.00 0.00 0.00 2.41
53 54 5.176223 GCTGCAACTAGTACGTTTCTACAAA 59.824 40.000 0.00 0.00 0.00 2.83
54 55 6.292488 GCTGCAACTAGTACGTTTCTACAAAA 60.292 38.462 0.00 0.00 0.00 2.44
55 56 7.536895 TGCAACTAGTACGTTTCTACAAAAA 57.463 32.000 0.00 0.00 0.00 1.94
76 77 7.930513 AAAAACTGCAGCTATGTAAAAGAAC 57.069 32.000 15.27 0.00 0.00 3.01
77 78 6.884280 AAACTGCAGCTATGTAAAAGAACT 57.116 33.333 15.27 0.00 0.00 3.01
78 79 7.979444 AAACTGCAGCTATGTAAAAGAACTA 57.021 32.000 15.27 0.00 0.00 2.24
79 80 7.979444 AACTGCAGCTATGTAAAAGAACTAA 57.021 32.000 15.27 0.00 0.00 2.24
80 81 8.567285 AACTGCAGCTATGTAAAAGAACTAAT 57.433 30.769 15.27 0.00 0.00 1.73
81 82 7.978982 ACTGCAGCTATGTAAAAGAACTAATG 58.021 34.615 15.27 0.00 0.00 1.90
82 83 7.066284 ACTGCAGCTATGTAAAAGAACTAATGG 59.934 37.037 15.27 0.00 0.00 3.16
83 84 7.109501 TGCAGCTATGTAAAAGAACTAATGGA 58.890 34.615 0.00 0.00 0.00 3.41
84 85 7.609918 TGCAGCTATGTAAAAGAACTAATGGAA 59.390 33.333 0.00 0.00 0.00 3.53
85 86 7.910683 GCAGCTATGTAAAAGAACTAATGGAAC 59.089 37.037 0.00 0.00 0.00 3.62
86 87 8.116753 CAGCTATGTAAAAGAACTAATGGAACG 58.883 37.037 0.00 0.00 0.00 3.95
87 88 7.280205 AGCTATGTAAAAGAACTAATGGAACGG 59.720 37.037 0.00 0.00 0.00 4.44
88 89 7.279313 GCTATGTAAAAGAACTAATGGAACGGA 59.721 37.037 0.00 0.00 0.00 4.69
89 90 7.989416 ATGTAAAAGAACTAATGGAACGGAA 57.011 32.000 0.00 0.00 0.00 4.30
90 91 7.429636 TGTAAAAGAACTAATGGAACGGAAG 57.570 36.000 0.00 0.00 0.00 3.46
91 92 5.372547 AAAAGAACTAATGGAACGGAAGC 57.627 39.130 0.00 0.00 0.00 3.86
92 93 2.618053 AGAACTAATGGAACGGAAGCG 58.382 47.619 0.00 0.00 0.00 4.68
93 94 1.062148 GAACTAATGGAACGGAAGCGC 59.938 52.381 0.00 0.00 0.00 5.92
94 95 0.036765 ACTAATGGAACGGAAGCGCA 60.037 50.000 11.47 0.00 0.00 6.09
95 96 1.299541 CTAATGGAACGGAAGCGCAT 58.700 50.000 11.47 0.00 0.00 4.73
96 97 2.159014 ACTAATGGAACGGAAGCGCATA 60.159 45.455 11.47 0.00 0.00 3.14
97 98 1.014352 AATGGAACGGAAGCGCATAC 58.986 50.000 11.47 0.00 0.00 2.39
98 99 0.107897 ATGGAACGGAAGCGCATACA 60.108 50.000 11.47 0.00 0.00 2.29
99 100 0.320858 TGGAACGGAAGCGCATACAA 60.321 50.000 11.47 0.00 0.00 2.41
100 101 0.800012 GGAACGGAAGCGCATACAAA 59.200 50.000 11.47 0.00 0.00 2.83
101 102 1.198178 GGAACGGAAGCGCATACAAAA 59.802 47.619 11.47 0.00 0.00 2.44
102 103 2.159435 GGAACGGAAGCGCATACAAAAT 60.159 45.455 11.47 0.00 0.00 1.82
103 104 3.064271 GGAACGGAAGCGCATACAAAATA 59.936 43.478 11.47 0.00 0.00 1.40
104 105 4.261031 GGAACGGAAGCGCATACAAAATAT 60.261 41.667 11.47 0.00 0.00 1.28
105 106 4.893424 ACGGAAGCGCATACAAAATATT 57.107 36.364 11.47 0.00 0.00 1.28
106 107 4.844267 ACGGAAGCGCATACAAAATATTC 58.156 39.130 11.47 0.00 0.00 1.75
107 108 4.334203 ACGGAAGCGCATACAAAATATTCA 59.666 37.500 11.47 0.00 0.00 2.57
108 109 4.670621 CGGAAGCGCATACAAAATATTCAC 59.329 41.667 11.47 0.00 0.00 3.18
109 110 5.577835 GGAAGCGCATACAAAATATTCACA 58.422 37.500 11.47 0.00 0.00 3.58
110 111 6.208644 GGAAGCGCATACAAAATATTCACAT 58.791 36.000 11.47 0.00 0.00 3.21
111 112 6.142798 GGAAGCGCATACAAAATATTCACATG 59.857 38.462 11.47 0.00 0.00 3.21
112 113 4.977963 AGCGCATACAAAATATTCACATGC 59.022 37.500 11.47 11.41 35.19 4.06
113 114 4.739228 GCGCATACAAAATATTCACATGCA 59.261 37.500 0.30 0.00 37.70 3.96
114 115 5.331756 GCGCATACAAAATATTCACATGCAC 60.332 40.000 0.30 9.22 37.70 4.57
115 116 5.972973 CGCATACAAAATATTCACATGCACT 59.027 36.000 17.34 0.00 37.70 4.40
116 117 6.075257 CGCATACAAAATATTCACATGCACTG 60.075 38.462 17.34 0.00 37.70 3.66
117 118 6.753279 GCATACAAAATATTCACATGCACTGT 59.247 34.615 14.50 0.00 37.74 3.55
118 119 7.043854 GCATACAAAATATTCACATGCACTGTC 60.044 37.037 14.50 0.00 37.74 3.51
119 120 6.330004 ACAAAATATTCACATGCACTGTCA 57.670 33.333 0.00 0.00 35.29 3.58
120 121 6.747125 ACAAAATATTCACATGCACTGTCAA 58.253 32.000 0.00 0.00 35.29 3.18
121 122 6.864685 ACAAAATATTCACATGCACTGTCAAG 59.135 34.615 0.00 0.00 35.29 3.02
122 123 6.822667 AAATATTCACATGCACTGTCAAGA 57.177 33.333 0.00 0.00 35.29 3.02
123 124 6.822667 AATATTCACATGCACTGTCAAGAA 57.177 33.333 0.00 0.00 35.29 2.52
124 125 4.761235 ATTCACATGCACTGTCAAGAAG 57.239 40.909 0.00 0.00 35.29 2.85
125 126 1.875514 TCACATGCACTGTCAAGAAGC 59.124 47.619 0.00 0.00 35.29 3.86
126 127 1.605232 CACATGCACTGTCAAGAAGCA 59.395 47.619 0.00 0.00 40.40 3.91
127 128 2.033675 CACATGCACTGTCAAGAAGCAA 59.966 45.455 0.00 0.00 39.87 3.91
128 129 2.889045 ACATGCACTGTCAAGAAGCAAT 59.111 40.909 0.00 0.00 39.87 3.56
129 130 4.074259 ACATGCACTGTCAAGAAGCAATA 58.926 39.130 0.00 0.00 39.87 1.90
130 131 4.520111 ACATGCACTGTCAAGAAGCAATAA 59.480 37.500 0.00 0.00 39.87 1.40
131 132 4.754372 TGCACTGTCAAGAAGCAATAAG 57.246 40.909 0.00 0.00 35.89 1.73
132 133 4.388485 TGCACTGTCAAGAAGCAATAAGA 58.612 39.130 0.00 0.00 35.89 2.10
133 134 4.214119 TGCACTGTCAAGAAGCAATAAGAC 59.786 41.667 0.00 0.00 35.89 3.01
134 135 4.378874 GCACTGTCAAGAAGCAATAAGACC 60.379 45.833 0.00 0.00 0.00 3.85
135 136 4.756642 CACTGTCAAGAAGCAATAAGACCA 59.243 41.667 0.00 0.00 0.00 4.02
136 137 4.999950 ACTGTCAAGAAGCAATAAGACCAG 59.000 41.667 0.00 0.00 0.00 4.00
137 138 4.326826 TGTCAAGAAGCAATAAGACCAGG 58.673 43.478 0.00 0.00 0.00 4.45
138 139 4.041567 TGTCAAGAAGCAATAAGACCAGGA 59.958 41.667 0.00 0.00 0.00 3.86
139 140 5.003804 GTCAAGAAGCAATAAGACCAGGAA 58.996 41.667 0.00 0.00 0.00 3.36
140 141 5.473504 GTCAAGAAGCAATAAGACCAGGAAA 59.526 40.000 0.00 0.00 0.00 3.13
141 142 6.151817 GTCAAGAAGCAATAAGACCAGGAAAT 59.848 38.462 0.00 0.00 0.00 2.17
142 143 6.151648 TCAAGAAGCAATAAGACCAGGAAATG 59.848 38.462 0.00 0.00 0.00 2.32
143 144 5.574188 AGAAGCAATAAGACCAGGAAATGT 58.426 37.500 0.00 0.00 0.00 2.71
144 145 5.649831 AGAAGCAATAAGACCAGGAAATGTC 59.350 40.000 0.00 0.00 0.00 3.06
145 146 5.184892 AGCAATAAGACCAGGAAATGTCT 57.815 39.130 0.00 0.00 43.47 3.41
146 147 6.313519 AGCAATAAGACCAGGAAATGTCTA 57.686 37.500 0.00 0.00 40.84 2.59
147 148 6.116126 AGCAATAAGACCAGGAAATGTCTAC 58.884 40.000 0.00 0.00 40.84 2.59
148 149 6.069963 AGCAATAAGACCAGGAAATGTCTACT 60.070 38.462 0.00 0.00 40.84 2.57
149 150 6.599638 GCAATAAGACCAGGAAATGTCTACTT 59.400 38.462 0.00 0.00 40.84 2.24
150 151 7.414540 GCAATAAGACCAGGAAATGTCTACTTG 60.415 40.741 0.00 0.00 40.84 3.16
151 152 3.944087 AGACCAGGAAATGTCTACTTGC 58.056 45.455 0.00 0.00 39.96 4.01
152 153 3.584848 AGACCAGGAAATGTCTACTTGCT 59.415 43.478 0.00 0.00 39.96 3.91
153 154 4.042187 AGACCAGGAAATGTCTACTTGCTT 59.958 41.667 0.00 0.00 39.96 3.91
154 155 4.327680 ACCAGGAAATGTCTACTTGCTTC 58.672 43.478 0.00 0.00 0.00 3.86
155 156 3.691609 CCAGGAAATGTCTACTTGCTTCC 59.308 47.826 0.00 0.00 33.90 3.46
156 157 3.691609 CAGGAAATGTCTACTTGCTTCCC 59.308 47.826 0.00 0.00 34.15 3.97
157 158 3.330701 AGGAAATGTCTACTTGCTTCCCA 59.669 43.478 0.00 0.00 34.15 4.37
158 159 3.440522 GGAAATGTCTACTTGCTTCCCAC 59.559 47.826 0.00 0.00 0.00 4.61
159 160 2.386661 ATGTCTACTTGCTTCCCACG 57.613 50.000 0.00 0.00 0.00 4.94
160 161 1.334160 TGTCTACTTGCTTCCCACGA 58.666 50.000 0.00 0.00 0.00 4.35
161 162 1.899814 TGTCTACTTGCTTCCCACGAT 59.100 47.619 0.00 0.00 0.00 3.73
162 163 2.094182 TGTCTACTTGCTTCCCACGATC 60.094 50.000 0.00 0.00 0.00 3.69
163 164 1.134367 TCTACTTGCTTCCCACGATCG 59.866 52.381 14.88 14.88 0.00 3.69
164 165 0.459585 TACTTGCTTCCCACGATCGC 60.460 55.000 16.60 0.00 0.00 4.58
165 166 1.448540 CTTGCTTCCCACGATCGCT 60.449 57.895 16.60 0.00 0.00 4.93
166 167 0.179111 CTTGCTTCCCACGATCGCTA 60.179 55.000 16.60 0.00 0.00 4.26
167 168 0.248012 TTGCTTCCCACGATCGCTAA 59.752 50.000 16.60 3.50 0.00 3.09
168 169 0.179111 TGCTTCCCACGATCGCTAAG 60.179 55.000 16.60 13.94 0.00 2.18
169 170 1.491505 GCTTCCCACGATCGCTAAGC 61.492 60.000 16.60 19.35 33.36 3.09
170 171 0.876342 CTTCCCACGATCGCTAAGCC 60.876 60.000 16.60 0.00 0.00 4.35
171 172 1.327690 TTCCCACGATCGCTAAGCCT 61.328 55.000 16.60 0.00 0.00 4.58
172 173 1.300233 CCCACGATCGCTAAGCCTC 60.300 63.158 16.60 0.00 0.00 4.70
173 174 1.658717 CCACGATCGCTAAGCCTCG 60.659 63.158 16.60 0.00 36.65 4.63
174 175 1.355563 CACGATCGCTAAGCCTCGA 59.644 57.895 16.60 3.60 39.17 4.04
175 176 0.248498 CACGATCGCTAAGCCTCGAA 60.248 55.000 16.60 0.00 38.28 3.71
176 177 0.248539 ACGATCGCTAAGCCTCGAAC 60.249 55.000 16.60 1.81 38.28 3.95
177 178 0.248498 CGATCGCTAAGCCTCGAACA 60.248 55.000 0.26 0.00 38.28 3.18
178 179 1.797713 CGATCGCTAAGCCTCGAACAA 60.798 52.381 0.26 0.00 38.28 2.83
179 180 1.855360 GATCGCTAAGCCTCGAACAAG 59.145 52.381 0.00 0.00 38.28 3.16
180 181 0.736325 TCGCTAAGCCTCGAACAAGC 60.736 55.000 0.00 0.00 0.00 4.01
181 182 1.696832 CGCTAAGCCTCGAACAAGCC 61.697 60.000 0.00 0.00 0.00 4.35
182 183 1.369839 GCTAAGCCTCGAACAAGCCC 61.370 60.000 0.00 0.00 0.00 5.19
183 184 0.036388 CTAAGCCTCGAACAAGCCCA 60.036 55.000 0.00 0.00 0.00 5.36
184 185 0.618458 TAAGCCTCGAACAAGCCCAT 59.382 50.000 0.00 0.00 0.00 4.00
185 186 0.618458 AAGCCTCGAACAAGCCCATA 59.382 50.000 0.00 0.00 0.00 2.74
186 187 0.839946 AGCCTCGAACAAGCCCATAT 59.160 50.000 0.00 0.00 0.00 1.78
187 188 1.212935 AGCCTCGAACAAGCCCATATT 59.787 47.619 0.00 0.00 0.00 1.28
188 189 2.024414 GCCTCGAACAAGCCCATATTT 58.976 47.619 0.00 0.00 0.00 1.40
189 190 2.427095 GCCTCGAACAAGCCCATATTTT 59.573 45.455 0.00 0.00 0.00 1.82
190 191 3.734902 GCCTCGAACAAGCCCATATTTTG 60.735 47.826 0.00 0.00 0.00 2.44
191 192 3.443681 CCTCGAACAAGCCCATATTTTGT 59.556 43.478 0.00 0.00 36.66 2.83
192 193 4.638421 CCTCGAACAAGCCCATATTTTGTA 59.362 41.667 0.00 0.00 34.18 2.41
193 194 5.448632 CCTCGAACAAGCCCATATTTTGTAC 60.449 44.000 0.00 0.00 34.18 2.90
194 195 5.004448 TCGAACAAGCCCATATTTTGTACA 58.996 37.500 0.00 0.00 34.18 2.90
195 196 5.123186 TCGAACAAGCCCATATTTTGTACAG 59.877 40.000 0.00 0.00 34.18 2.74
196 197 5.106317 CGAACAAGCCCATATTTTGTACAGT 60.106 40.000 0.00 0.00 34.18 3.55
197 198 5.897377 ACAAGCCCATATTTTGTACAGTC 57.103 39.130 0.00 0.00 33.57 3.51
198 199 4.705023 ACAAGCCCATATTTTGTACAGTCC 59.295 41.667 0.00 0.00 33.57 3.85
199 200 4.862641 AGCCCATATTTTGTACAGTCCT 57.137 40.909 0.00 0.00 0.00 3.85
200 201 5.193099 AGCCCATATTTTGTACAGTCCTT 57.807 39.130 0.00 0.00 0.00 3.36
201 202 5.580022 AGCCCATATTTTGTACAGTCCTTT 58.420 37.500 0.00 0.00 0.00 3.11
202 203 6.727394 AGCCCATATTTTGTACAGTCCTTTA 58.273 36.000 0.00 0.00 0.00 1.85
203 204 7.354312 AGCCCATATTTTGTACAGTCCTTTAT 58.646 34.615 0.00 0.00 0.00 1.40
204 205 7.285401 AGCCCATATTTTGTACAGTCCTTTATG 59.715 37.037 0.00 0.55 0.00 1.90
205 206 7.425606 CCCATATTTTGTACAGTCCTTTATGC 58.574 38.462 0.00 0.00 0.00 3.14
206 207 7.068103 CCCATATTTTGTACAGTCCTTTATGCA 59.932 37.037 0.00 0.00 0.00 3.96
207 208 8.632679 CCATATTTTGTACAGTCCTTTATGCAT 58.367 33.333 3.79 3.79 0.00 3.96
211 212 8.630054 TTTTGTACAGTCCTTTATGCATAAGT 57.370 30.769 18.13 13.87 0.00 2.24
212 213 8.630054 TTTGTACAGTCCTTTATGCATAAGTT 57.370 30.769 18.13 2.60 0.00 2.66
213 214 9.727859 TTTGTACAGTCCTTTATGCATAAGTTA 57.272 29.630 18.13 4.38 0.00 2.24
214 215 9.727859 TTGTACAGTCCTTTATGCATAAGTTAA 57.272 29.630 18.13 4.03 0.00 2.01
215 216 9.158233 TGTACAGTCCTTTATGCATAAGTTAAC 57.842 33.333 18.13 14.52 0.00 2.01
216 217 9.158233 GTACAGTCCTTTATGCATAAGTTAACA 57.842 33.333 18.13 2.98 0.00 2.41
217 218 8.630054 ACAGTCCTTTATGCATAAGTTAACAA 57.370 30.769 18.13 2.29 0.00 2.83
218 219 8.512138 ACAGTCCTTTATGCATAAGTTAACAAC 58.488 33.333 18.13 11.06 0.00 3.32
229 230 8.894731 TGCATAAGTTAACAACACTTGAAAGTA 58.105 29.630 8.61 0.00 37.08 2.24
275 276 4.085733 TGGTGCTGCACTTAATGGTAAAT 58.914 39.130 29.54 0.00 34.40 1.40
282 283 6.473455 GCTGCACTTAATGGTAAATTGTGATC 59.527 38.462 0.00 0.00 0.00 2.92
284 285 7.537715 TGCACTTAATGGTAAATTGTGATCTG 58.462 34.615 0.00 0.00 0.00 2.90
285 286 7.392953 TGCACTTAATGGTAAATTGTGATCTGA 59.607 33.333 0.00 0.00 0.00 3.27
295 296 8.616076 GGTAAATTGTGATCTGAACTATTGAGG 58.384 37.037 0.00 0.00 0.00 3.86
296 297 9.167311 GTAAATTGTGATCTGAACTATTGAGGT 57.833 33.333 0.00 0.00 0.00 3.85
297 298 8.641498 AAATTGTGATCTGAACTATTGAGGTT 57.359 30.769 0.00 0.00 0.00 3.50
298 299 9.739276 AAATTGTGATCTGAACTATTGAGGTTA 57.261 29.630 0.00 0.00 0.00 2.85
299 300 8.954950 ATTGTGATCTGAACTATTGAGGTTAG 57.045 34.615 0.00 0.00 0.00 2.34
309 310 8.304596 TGAACTATTGAGGTTAGTTAGACAGTG 58.695 37.037 0.00 0.00 39.40 3.66
387 388 5.778161 TTCGTCACACATAGTTTATGCAG 57.222 39.130 0.00 0.00 39.79 4.41
393 394 7.426456 CGTCACACATAGTTTATGCAGAAATTC 59.574 37.037 10.10 0.00 39.79 2.17
471 474 2.765699 TGCATGGCTAGTATCTGTCACA 59.234 45.455 0.00 0.00 0.00 3.58
505 508 5.056480 CAGAATTGTATACAATCGCAGGGA 58.944 41.667 27.07 1.26 45.06 4.20
512 515 0.598065 ACAATCGCAGGGAGTTTTGC 59.402 50.000 0.00 0.00 36.97 3.68
515 518 0.250901 ATCGCAGGGAGTTTTGCACT 60.251 50.000 0.00 0.00 40.28 4.40
571 574 4.638865 GGACACTTAAACCACTGTCAGTTT 59.361 41.667 1.67 9.61 39.44 2.66
576 579 8.024865 ACACTTAAACCACTGTCAGTTTTTAAC 58.975 33.333 17.78 0.00 37.39 2.01
595 598 7.534085 TTTAACTTAGCGAATGTCACCATAG 57.466 36.000 0.00 0.00 0.00 2.23
626 629 6.519382 TGTACATCTAGATCTGAAGCAATGG 58.481 40.000 5.18 0.00 0.00 3.16
638 641 2.701587 GCAATGGCGTGGCTACATA 58.298 52.632 0.00 0.00 0.00 2.29
730 733 1.815003 CTTGCCTGATGGGTTCACTTC 59.185 52.381 0.00 0.00 37.43 3.01
736 739 3.308688 CCTGATGGGTTCACTTCCAGAAT 60.309 47.826 0.00 0.00 36.38 2.40
745 748 6.646653 GGGTTCACTTCCAGAATTCAAAATTC 59.353 38.462 8.44 4.59 0.00 2.17
748 751 7.543359 TCACTTCCAGAATTCAAAATTCCAT 57.457 32.000 8.44 0.00 0.00 3.41
754 757 9.753674 TTCCAGAATTCAAAATTCCATAGTACT 57.246 29.630 8.44 0.00 0.00 2.73
761 764 6.812998 TCAAAATTCCATAGTACTACCTCCG 58.187 40.000 4.31 0.00 0.00 4.63
789 792 5.344933 GGAATTAACCGTTGTTGAAATGAGC 59.655 40.000 0.00 0.00 35.87 4.26
793 796 2.873472 ACCGTTGTTGAAATGAGCGTAA 59.127 40.909 0.00 0.00 0.00 3.18
797 800 5.333492 CCGTTGTTGAAATGAGCGTAACTAA 60.333 40.000 0.00 0.00 0.00 2.24
799 802 5.277601 TGTTGAAATGAGCGTAACTAAGC 57.722 39.130 0.00 0.00 0.00 3.09
800 803 4.143200 TGTTGAAATGAGCGTAACTAAGCG 60.143 41.667 0.00 0.00 38.61 4.68
802 805 3.366724 TGAAATGAGCGTAACTAAGCGTG 59.633 43.478 0.00 0.00 38.61 5.34
803 806 2.649331 ATGAGCGTAACTAAGCGTGT 57.351 45.000 0.00 0.00 38.61 4.49
806 809 3.125316 TGAGCGTAACTAAGCGTGTTTT 58.875 40.909 0.00 0.00 38.61 2.43
807 810 4.297510 TGAGCGTAACTAAGCGTGTTTTA 58.702 39.130 0.00 0.00 38.61 1.52
808 811 4.383649 TGAGCGTAACTAAGCGTGTTTTAG 59.616 41.667 0.00 0.00 38.61 1.85
809 812 4.301628 AGCGTAACTAAGCGTGTTTTAGT 58.698 39.130 0.00 0.00 41.75 2.24
810 813 4.149396 AGCGTAACTAAGCGTGTTTTAGTG 59.851 41.667 0.00 0.00 39.71 2.74
811 814 4.084900 GCGTAACTAAGCGTGTTTTAGTGT 60.085 41.667 0.00 0.00 39.71 3.55
812 815 5.360296 CGTAACTAAGCGTGTTTTAGTGTG 58.640 41.667 0.00 0.00 39.71 3.82
813 816 5.051508 CGTAACTAAGCGTGTTTTAGTGTGT 60.052 40.000 0.00 0.00 39.71 3.72
814 817 6.142161 CGTAACTAAGCGTGTTTTAGTGTGTA 59.858 38.462 0.00 0.00 39.71 2.90
815 818 6.907206 AACTAAGCGTGTTTTAGTGTGTAA 57.093 33.333 0.00 0.00 39.71 2.41
816 819 6.907206 ACTAAGCGTGTTTTAGTGTGTAAA 57.093 33.333 0.00 0.00 39.28 2.01
817 820 7.486802 ACTAAGCGTGTTTTAGTGTGTAAAT 57.513 32.000 0.00 0.00 39.28 1.40
818 821 8.592105 ACTAAGCGTGTTTTAGTGTGTAAATA 57.408 30.769 0.00 0.00 39.28 1.40
819 822 8.490355 ACTAAGCGTGTTTTAGTGTGTAAATAC 58.510 33.333 0.00 0.00 39.28 1.89
820 823 6.847956 AGCGTGTTTTAGTGTGTAAATACA 57.152 33.333 0.00 0.00 0.00 2.29
834 837 6.403333 TGTAAATACACTCATTTCAGCGAC 57.597 37.500 0.00 0.00 30.84 5.19
835 838 5.929415 TGTAAATACACTCATTTCAGCGACA 59.071 36.000 0.00 0.00 30.84 4.35
836 839 5.536554 AAATACACTCATTTCAGCGACAG 57.463 39.130 0.00 0.00 0.00 3.51
837 840 2.533266 ACACTCATTTCAGCGACAGT 57.467 45.000 0.00 0.00 0.00 3.55
838 841 2.838736 ACACTCATTTCAGCGACAGTT 58.161 42.857 0.00 0.00 0.00 3.16
839 842 3.990092 ACACTCATTTCAGCGACAGTTA 58.010 40.909 0.00 0.00 0.00 2.24
840 843 4.377021 ACACTCATTTCAGCGACAGTTAA 58.623 39.130 0.00 0.00 0.00 2.01
841 844 4.997395 ACACTCATTTCAGCGACAGTTAAT 59.003 37.500 0.00 0.00 0.00 1.40
842 845 5.470098 ACACTCATTTCAGCGACAGTTAATT 59.530 36.000 0.00 0.00 0.00 1.40
843 846 6.017933 CACTCATTTCAGCGACAGTTAATTC 58.982 40.000 0.00 0.00 0.00 2.17
844 847 5.122396 ACTCATTTCAGCGACAGTTAATTCC 59.878 40.000 0.00 0.00 0.00 3.01
845 848 4.092821 TCATTTCAGCGACAGTTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
846 849 2.004583 TCAGCGACAGTTAATTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
847 850 1.546923 TCAGCGACAGTTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
848 851 1.659098 CAGCGACAGTTAATTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
849 852 0.643820 GCGACAGTTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
868 871 2.119655 CGGACGGAGGGAGTGTAGG 61.120 68.421 0.00 0.00 0.00 3.18
882 885 0.887387 TGTAGGCGCTCAAACAACCC 60.887 55.000 7.64 0.00 0.00 4.11
909 912 5.301551 TGGTGCCTAACATGCCTATAAATTG 59.698 40.000 0.00 0.00 0.00 2.32
937 940 3.616956 TCACTCCATCTCATTCCACAC 57.383 47.619 0.00 0.00 0.00 3.82
963 966 2.550208 CCCACACAAGAACCCTAGACAC 60.550 54.545 0.00 0.00 0.00 3.67
967 970 3.201266 ACACAAGAACCCTAGACACCAAA 59.799 43.478 0.00 0.00 0.00 3.28
969 972 3.146847 CAAGAACCCTAGACACCAAACC 58.853 50.000 0.00 0.00 0.00 3.27
979 982 2.031870 GACACCAAACCAGCTTTCCTT 58.968 47.619 0.00 0.00 0.00 3.36
992 995 5.040635 CAGCTTTCCTTACTCTCGAATCTC 58.959 45.833 0.00 0.00 0.00 2.75
1039 1042 3.275143 TCATATTACCAAACCACCGCTG 58.725 45.455 0.00 0.00 0.00 5.18
1086 1089 2.290577 GGAGCATCTCTTCCACCTGTTT 60.291 50.000 0.00 0.00 33.73 2.83
1092 1095 1.605710 CTCTTCCACCTGTTTGTGCAG 59.394 52.381 0.00 0.00 34.85 4.41
1155 1158 0.263172 TGAACCCAAAGCTTCCCCAA 59.737 50.000 0.00 0.00 0.00 4.12
1194 1197 1.475403 CTACTGACTGGGACATCCGT 58.525 55.000 0.00 0.00 38.20 4.69
1203 1206 1.338136 GGGACATCCGTGATGGTCCT 61.338 60.000 20.74 5.56 43.60 3.85
1206 1209 1.207089 GACATCCGTGATGGTCCTGAA 59.793 52.381 15.41 0.00 43.60 3.02
1208 1211 2.239654 ACATCCGTGATGGTCCTGAAAT 59.760 45.455 15.41 0.00 43.60 2.17
1218 1221 1.611491 GGTCCTGAAATCACGGCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
1316 1319 0.108804 TTCACCGATGAGAGGTTCGC 60.109 55.000 0.00 0.00 40.59 4.70
1442 1445 1.483595 CCTCCCTCAGTGTGCAAGGA 61.484 60.000 2.79 0.00 31.44 3.36
1454 1457 2.102252 TGTGCAAGGACATTTGGTTTCC 59.898 45.455 0.00 0.00 0.00 3.13
1463 1466 0.879090 ATTTGGTTTCCGACGAAGGC 59.121 50.000 0.00 0.00 0.00 4.35
1475 1478 0.611714 ACGAAGGCGAATGGGTAGTT 59.388 50.000 0.00 0.00 41.64 2.24
1484 1487 1.832998 GAATGGGTAGTTACGGGTGGA 59.167 52.381 0.00 0.00 0.00 4.02
1547 1550 4.162651 AGAAAATCAAGGAATTGGCAGGT 58.837 39.130 0.00 0.00 0.00 4.00
1623 1631 4.201724 CGGTGAGATTCATTTTTCCTCGTC 60.202 45.833 0.00 0.00 0.00 4.20
1629 1637 7.445402 TGAGATTCATTTTTCCTCGTCTTCTTT 59.555 33.333 0.00 0.00 0.00 2.52
1686 1704 9.777297 AGCTAATTTGTATTTTTGTCATGGTTT 57.223 25.926 0.00 0.00 0.00 3.27
1744 1762 7.599245 ACTTCTAATTAGCTCTAACACACACAC 59.401 37.037 7.67 0.00 0.00 3.82
1746 1764 5.924475 AATTAGCTCTAACACACACACAC 57.076 39.130 0.00 0.00 0.00 3.82
1748 1766 2.550978 AGCTCTAACACACACACACAC 58.449 47.619 0.00 0.00 0.00 3.82
1749 1767 2.093711 AGCTCTAACACACACACACACA 60.094 45.455 0.00 0.00 0.00 3.72
1750 1768 2.030457 GCTCTAACACACACACACACAC 59.970 50.000 0.00 0.00 0.00 3.82
1759 1777 5.762711 ACACACACACACACACATGTATATT 59.237 36.000 0.00 0.00 36.72 1.28
1812 1869 2.690734 GGGGTGGGAATGGAGGGAC 61.691 68.421 0.00 0.00 0.00 4.46
1826 1883 2.760650 GGAGGGACACCATTTGAAATCC 59.239 50.000 0.00 0.00 39.49 3.01
1829 1886 2.233676 GGGACACCATTTGAAATCCCAC 59.766 50.000 8.33 0.00 44.53 4.61
1839 1896 0.034670 GAAATCCCACAGGCAGAGCT 60.035 55.000 0.00 0.00 0.00 4.09
1874 1931 5.998454 AGAAAGTGTCACAATTCAGAGTG 57.002 39.130 18.29 0.00 37.10 3.51
1875 1932 4.274459 AGAAAGTGTCACAATTCAGAGTGC 59.726 41.667 18.29 0.00 35.76 4.40
1889 1946 4.832248 TCAGAGTGCCGAAGTTATTGATT 58.168 39.130 0.00 0.00 0.00 2.57
1912 1969 0.392461 TTGCCTTCACCTACATCGGC 60.392 55.000 0.00 0.00 38.01 5.54
1914 1971 1.972660 GCCTTCACCTACATCGGCCT 61.973 60.000 0.00 0.00 0.00 5.19
1917 1974 2.307768 CTTCACCTACATCGGCCTAGA 58.692 52.381 0.00 0.00 0.00 2.43
1982 2039 0.394938 TAAGCAGCCGGTGAGTGAAA 59.605 50.000 1.90 0.00 0.00 2.69
1986 2043 1.000274 GCAGCCGGTGAGTGAAATTTT 60.000 47.619 1.90 0.00 0.00 1.82
1988 2045 1.613437 AGCCGGTGAGTGAAATTTTGG 59.387 47.619 1.90 0.00 0.00 3.28
1989 2046 1.611491 GCCGGTGAGTGAAATTTTGGA 59.389 47.619 1.90 0.00 0.00 3.53
1992 2049 4.799255 GCCGGTGAGTGAAATTTTGGATTT 60.799 41.667 1.90 0.00 0.00 2.17
1997 2077 6.760770 GGTGAGTGAAATTTTGGATTTGTTGA 59.239 34.615 0.00 0.00 0.00 3.18
2010 2090 5.127519 TGGATTTGTTGAATAATGGGCTCAG 59.872 40.000 0.00 0.00 0.00 3.35
2011 2091 5.452356 GGATTTGTTGAATAATGGGCTCAGG 60.452 44.000 0.00 0.00 0.00 3.86
2028 2108 5.417811 GCTCAGGTCATGGATCACATATAG 58.582 45.833 0.00 0.00 37.84 1.31
2031 2111 7.581076 GCTCAGGTCATGGATCACATATAGAAT 60.581 40.741 0.00 0.00 37.84 2.40
2032 2112 8.899887 TCAGGTCATGGATCACATATAGAATA 57.100 34.615 0.00 0.00 37.84 1.75
2033 2113 9.325248 TCAGGTCATGGATCACATATAGAATAA 57.675 33.333 0.00 0.00 37.84 1.40
2058 2138 6.003326 TGTTGACAATCTGACACCACATATT 58.997 36.000 0.00 0.00 0.00 1.28
2076 2156 3.525800 ATTTACTCCCTTGTGGTGCTT 57.474 42.857 0.00 0.00 34.77 3.91
2078 2158 4.440826 TTTACTCCCTTGTGGTGCTTAA 57.559 40.909 0.00 0.00 34.77 1.85
2082 2162 4.332828 ACTCCCTTGTGGTGCTTAATAAC 58.667 43.478 0.00 0.00 34.77 1.89
2087 2167 5.354234 CCCTTGTGGTGCTTAATAACACTAG 59.646 44.000 10.44 10.44 36.99 2.57
2095 2175 5.232414 GTGCTTAATAACACTAGGAGCGAAG 59.768 44.000 0.00 0.00 33.92 3.79
2103 2183 3.055385 ACACTAGGAGCGAAGGCAAATAA 60.055 43.478 0.00 0.00 43.41 1.40
2109 2189 6.992063 AGGAGCGAAGGCAAATAATATATG 57.008 37.500 0.00 0.00 43.41 1.78
2136 2216 7.698130 GTGTTATAATCACTTGCACATTCCTTC 59.302 37.037 9.55 0.00 33.59 3.46
2148 2228 4.455606 CACATTCCTTCCCTTACAGATCC 58.544 47.826 0.00 0.00 0.00 3.36
2165 2245 2.037136 CCTGCAGCTTGGTCCTTCG 61.037 63.158 8.66 0.00 0.00 3.79
2170 2250 0.108424 CAGCTTGGTCCTTCGGAGAG 60.108 60.000 0.00 0.00 38.43 3.20
2172 2252 1.219393 CTTGGTCCTTCGGAGAGCC 59.781 63.158 0.00 0.00 38.43 4.70
2206 2286 1.134037 TGGCACAACCGGTAACTTTCT 60.134 47.619 8.00 0.00 43.94 2.52
2212 2292 5.243207 CACAACCGGTAACTTTCTAGGATT 58.757 41.667 8.00 0.00 0.00 3.01
2217 2297 7.427989 ACCGGTAACTTTCTAGGATTGAATA 57.572 36.000 4.49 0.00 0.00 1.75
2287 2367 1.166989 GGAAAACAATCCGCGGGTAA 58.833 50.000 27.83 6.34 0.00 2.85
2291 2371 1.957668 AACAATCCGCGGGTAATACC 58.042 50.000 27.83 0.00 37.60 2.73
2316 2396 2.434359 GTACCACTGCGCCAGACC 60.434 66.667 4.18 0.00 35.18 3.85
2317 2397 4.063967 TACCACTGCGCCAGACCG 62.064 66.667 4.18 0.00 35.18 4.79
2338 2418 3.444850 ACAGCATTGTGGGCTTCTT 57.555 47.368 0.00 0.00 40.23 2.52
2363 2443 0.320683 GGGCTGGCCAATTTGTTGAC 60.321 55.000 16.34 0.00 37.98 3.18
2423 2503 8.371770 AGTAGAAGCAAGTGTTTCTTAAGAAG 57.628 34.615 17.05 6.75 41.78 2.85
2426 2506 6.261158 AGAAGCAAGTGTTTCTTAAGAAGACC 59.739 38.462 17.05 10.39 41.78 3.85
2428 2508 6.827727 AGCAAGTGTTTCTTAAGAAGACCTA 58.172 36.000 17.05 0.38 37.23 3.08
2429 2509 6.931840 AGCAAGTGTTTCTTAAGAAGACCTAG 59.068 38.462 17.05 9.41 37.23 3.02
2438 2518 6.932947 TCTTAAGAAGACCTAGTGCTTTACC 58.067 40.000 1.68 0.00 31.20 2.85
2444 2524 2.167900 GACCTAGTGCTTTACCCGTCAT 59.832 50.000 0.00 0.00 0.00 3.06
2448 2528 3.418684 AGTGCTTTACCCGTCATCTTT 57.581 42.857 0.00 0.00 0.00 2.52
2449 2529 3.335579 AGTGCTTTACCCGTCATCTTTC 58.664 45.455 0.00 0.00 0.00 2.62
2450 2530 2.418976 GTGCTTTACCCGTCATCTTTCC 59.581 50.000 0.00 0.00 0.00 3.13
2451 2531 1.664151 GCTTTACCCGTCATCTTTCCG 59.336 52.381 0.00 0.00 0.00 4.30
2452 2532 1.664151 CTTTACCCGTCATCTTTCCGC 59.336 52.381 0.00 0.00 0.00 5.54
2453 2533 0.899720 TTACCCGTCATCTTTCCGCT 59.100 50.000 0.00 0.00 0.00 5.52
2454 2534 0.899720 TACCCGTCATCTTTCCGCTT 59.100 50.000 0.00 0.00 0.00 4.68
2455 2535 0.391263 ACCCGTCATCTTTCCGCTTC 60.391 55.000 0.00 0.00 0.00 3.86
2456 2536 0.108138 CCCGTCATCTTTCCGCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
2457 2537 1.281899 CCGTCATCTTTCCGCTTCTC 58.718 55.000 0.00 0.00 0.00 2.87
2488 2568 3.009033 AGCAATAAGAAGGGCGGCATATA 59.991 43.478 12.47 0.00 0.00 0.86
2490 2570 5.104527 AGCAATAAGAAGGGCGGCATATATA 60.105 40.000 12.47 0.00 0.00 0.86
2491 2571 5.765182 GCAATAAGAAGGGCGGCATATATAT 59.235 40.000 12.47 0.12 0.00 0.86
2492 2572 6.293626 GCAATAAGAAGGGCGGCATATATATG 60.294 42.308 17.01 17.01 36.78 1.78
2509 2589 8.911965 CATATATATGCTGTCCTAGTCTCATGT 58.088 37.037 9.75 0.00 0.00 3.21
2511 2591 4.927978 ATGCTGTCCTAGTCTCATGTAC 57.072 45.455 0.00 0.00 0.00 2.90
2522 2602 6.975772 CCTAGTCTCATGTACTACTTGCTTTC 59.024 42.308 6.59 0.00 0.00 2.62
2546 2626 9.874205 TTCATTTTTATCTTCTATGCCTTTTGG 57.126 29.630 0.00 0.00 44.18 3.28
2557 2642 2.311294 CCTTTTGGCTATCGGCTCG 58.689 57.895 0.00 0.00 41.46 5.03
2568 2653 4.077184 CGGCTCGGTGTGGCCTTA 62.077 66.667 3.32 0.00 45.57 2.69
2614 2699 8.738645 AAGAGTGTTGAATGTAATCTTATCCC 57.261 34.615 0.00 0.00 0.00 3.85
2615 2700 8.095452 AGAGTGTTGAATGTAATCTTATCCCT 57.905 34.615 0.00 0.00 0.00 4.20
2616 2701 7.989741 AGAGTGTTGAATGTAATCTTATCCCTG 59.010 37.037 0.00 0.00 0.00 4.45
2617 2702 6.543831 AGTGTTGAATGTAATCTTATCCCTGC 59.456 38.462 0.00 0.00 0.00 4.85
2618 2703 5.527214 TGTTGAATGTAATCTTATCCCTGCG 59.473 40.000 0.00 0.00 0.00 5.18
2619 2704 5.290493 TGAATGTAATCTTATCCCTGCGT 57.710 39.130 0.00 0.00 0.00 5.24
2620 2705 5.297547 TGAATGTAATCTTATCCCTGCGTC 58.702 41.667 0.00 0.00 0.00 5.19
2621 2706 4.955811 ATGTAATCTTATCCCTGCGTCA 57.044 40.909 0.00 0.00 0.00 4.35
2622 2707 4.955811 TGTAATCTTATCCCTGCGTCAT 57.044 40.909 0.00 0.00 0.00 3.06
2623 2708 4.631131 TGTAATCTTATCCCTGCGTCATG 58.369 43.478 0.00 0.00 0.00 3.07
2624 2709 3.845781 AATCTTATCCCTGCGTCATGT 57.154 42.857 0.00 0.00 0.00 3.21
2625 2710 3.845781 ATCTTATCCCTGCGTCATGTT 57.154 42.857 0.00 0.00 0.00 2.71
2626 2711 3.179443 TCTTATCCCTGCGTCATGTTC 57.821 47.619 0.00 0.00 0.00 3.18
2627 2712 2.499693 TCTTATCCCTGCGTCATGTTCA 59.500 45.455 0.00 0.00 0.00 3.18
2628 2713 3.055458 TCTTATCCCTGCGTCATGTTCAA 60.055 43.478 0.00 0.00 0.00 2.69
2629 2714 2.425143 ATCCCTGCGTCATGTTCAAT 57.575 45.000 0.00 0.00 0.00 2.57
2630 2715 3.558931 ATCCCTGCGTCATGTTCAATA 57.441 42.857 0.00 0.00 0.00 1.90
2631 2716 3.558931 TCCCTGCGTCATGTTCAATAT 57.441 42.857 0.00 0.00 0.00 1.28
2632 2717 4.681074 TCCCTGCGTCATGTTCAATATA 57.319 40.909 0.00 0.00 0.00 0.86
2633 2718 5.227569 TCCCTGCGTCATGTTCAATATAT 57.772 39.130 0.00 0.00 0.00 0.86
2634 2719 4.996758 TCCCTGCGTCATGTTCAATATATG 59.003 41.667 0.00 0.00 0.00 1.78
2635 2720 4.756642 CCCTGCGTCATGTTCAATATATGT 59.243 41.667 0.00 0.00 0.00 2.29
2636 2721 5.334337 CCCTGCGTCATGTTCAATATATGTG 60.334 44.000 0.00 0.00 0.00 3.21
2637 2722 5.094429 TGCGTCATGTTCAATATATGTGC 57.906 39.130 0.00 0.00 32.70 4.57
2638 2723 4.815846 TGCGTCATGTTCAATATATGTGCT 59.184 37.500 0.00 0.00 33.00 4.40
2639 2724 5.988561 TGCGTCATGTTCAATATATGTGCTA 59.011 36.000 0.00 0.00 33.00 3.49
2640 2725 6.481644 TGCGTCATGTTCAATATATGTGCTAA 59.518 34.615 0.00 0.00 33.00 3.09
2641 2726 7.173047 TGCGTCATGTTCAATATATGTGCTAAT 59.827 33.333 0.00 0.00 33.00 1.73
2642 2727 7.479603 GCGTCATGTTCAATATATGTGCTAATG 59.520 37.037 0.00 0.00 30.97 1.90
2643 2728 8.711457 CGTCATGTTCAATATATGTGCTAATGA 58.289 33.333 0.00 0.00 0.00 2.57
2705 2790 5.764686 TCCCTGTGTCATGTTCAATATATGC 59.235 40.000 0.00 0.00 0.00 3.14
2706 2791 5.532032 CCCTGTGTCATGTTCAATATATGCA 59.468 40.000 0.00 0.00 0.00 3.96
2743 2828 2.279810 TACTGCTACGGGCTGCACA 61.280 57.895 1.50 0.00 42.51 4.57
2757 2842 3.254166 GGCTGCACATACCTGATATTTGG 59.746 47.826 0.50 0.00 0.00 3.28
2784 2869 7.520798 AGAGCCCATCAGACATAATAAAATGA 58.479 34.615 0.00 0.00 0.00 2.57
2787 2872 8.636213 AGCCCATCAGACATAATAAAATGAAAG 58.364 33.333 0.00 0.00 0.00 2.62
2812 2897 2.320745 TCTCATCAAGCATGCATCGT 57.679 45.000 21.98 0.00 31.70 3.73
2813 2898 2.635714 TCTCATCAAGCATGCATCGTT 58.364 42.857 21.98 1.65 31.70 3.85
2814 2899 3.795877 TCTCATCAAGCATGCATCGTTA 58.204 40.909 21.98 0.00 31.70 3.18
2815 2900 4.190772 TCTCATCAAGCATGCATCGTTAA 58.809 39.130 21.98 0.00 31.70 2.01
2816 2901 4.635324 TCTCATCAAGCATGCATCGTTAAA 59.365 37.500 21.98 0.00 31.70 1.52
2817 2902 5.123661 TCTCATCAAGCATGCATCGTTAAAA 59.876 36.000 21.98 0.00 31.70 1.52
2818 2903 5.707931 TCATCAAGCATGCATCGTTAAAAA 58.292 33.333 21.98 0.00 31.70 1.94
2844 2929 0.108089 TGGGCATTGCAACATCATGC 60.108 50.000 12.50 12.50 46.58 4.06
2886 2971 7.941238 AGAGGATCAAACTCTCAAAATTCTCAA 59.059 33.333 0.00 0.00 41.26 3.02
2923 3008 1.202915 TGGTCATGAGCCTGCTTCAAA 60.203 47.619 21.58 0.00 0.00 2.69
2926 3011 2.555757 GTCATGAGCCTGCTTCAAAACT 59.444 45.455 0.00 0.00 0.00 2.66
2930 3015 3.141398 TGAGCCTGCTTCAAAACTGTAG 58.859 45.455 0.00 0.00 0.00 2.74
2933 3018 3.316308 AGCCTGCTTCAAAACTGTAGTTG 59.684 43.478 0.00 0.00 38.44 3.16
3273 3409 4.424626 TGAGCTACGAGTTTGATGATCAC 58.575 43.478 0.00 0.00 0.00 3.06
3277 3413 2.350522 ACGAGTTTGATGATCACCTGC 58.649 47.619 0.00 0.00 0.00 4.85
3285 3421 2.289631 TGATGATCACCTGCAAAGTCGT 60.290 45.455 0.00 0.00 0.00 4.34
3337 3473 3.748048 TCTAGCACAGAGAAACAATGCAC 59.252 43.478 0.00 0.00 38.79 4.57
3339 3475 1.337703 GCACAGAGAAACAATGCACCA 59.662 47.619 0.00 0.00 36.30 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.250200 ACGATTAAGGCACCACTGATTTTA 58.750 37.500 0.00 0.00 0.00 1.52
1 2 4.079253 ACGATTAAGGCACCACTGATTTT 58.921 39.130 0.00 0.00 0.00 1.82
2 3 3.686016 ACGATTAAGGCACCACTGATTT 58.314 40.909 0.00 0.00 0.00 2.17
3 4 3.270877 GACGATTAAGGCACCACTGATT 58.729 45.455 0.00 0.00 0.00 2.57
4 5 2.738643 CGACGATTAAGGCACCACTGAT 60.739 50.000 0.00 0.00 0.00 2.90
5 6 1.403647 CGACGATTAAGGCACCACTGA 60.404 52.381 0.00 0.00 0.00 3.41
6 7 0.999406 CGACGATTAAGGCACCACTG 59.001 55.000 0.00 0.00 0.00 3.66
7 8 0.892755 TCGACGATTAAGGCACCACT 59.107 50.000 0.00 0.00 0.00 4.00
8 9 0.997196 GTCGACGATTAAGGCACCAC 59.003 55.000 0.00 0.00 0.00 4.16
9 10 0.604073 TGTCGACGATTAAGGCACCA 59.396 50.000 11.62 0.00 0.00 4.17
10 11 1.278238 CTGTCGACGATTAAGGCACC 58.722 55.000 11.62 0.00 0.00 5.01
11 12 0.645868 GCTGTCGACGATTAAGGCAC 59.354 55.000 11.62 0.00 0.00 5.01
12 13 0.530744 AGCTGTCGACGATTAAGGCA 59.469 50.000 11.62 0.00 0.00 4.75
13 14 0.924090 CAGCTGTCGACGATTAAGGC 59.076 55.000 11.62 6.34 0.00 4.35
14 15 0.924090 GCAGCTGTCGACGATTAAGG 59.076 55.000 16.64 0.00 0.00 2.69
15 16 1.629013 TGCAGCTGTCGACGATTAAG 58.371 50.000 16.64 3.13 0.00 1.85
16 17 1.724623 GTTGCAGCTGTCGACGATTAA 59.275 47.619 16.64 0.00 0.00 1.40
17 18 1.067846 AGTTGCAGCTGTCGACGATTA 60.068 47.619 16.64 0.00 0.00 1.75
18 19 0.319900 AGTTGCAGCTGTCGACGATT 60.320 50.000 16.64 0.00 0.00 3.34
19 20 0.526211 TAGTTGCAGCTGTCGACGAT 59.474 50.000 16.64 1.43 0.00 3.73
20 21 0.109735 CTAGTTGCAGCTGTCGACGA 60.110 55.000 16.64 12.27 0.00 4.20
21 22 0.387367 ACTAGTTGCAGCTGTCGACG 60.387 55.000 16.64 7.05 0.00 5.12
22 23 2.251893 GTACTAGTTGCAGCTGTCGAC 58.748 52.381 16.64 16.46 0.00 4.20
23 24 1.135774 CGTACTAGTTGCAGCTGTCGA 60.136 52.381 16.64 4.76 0.00 4.20
24 25 1.260206 CGTACTAGTTGCAGCTGTCG 58.740 55.000 16.64 8.43 0.00 4.35
25 26 2.349297 ACGTACTAGTTGCAGCTGTC 57.651 50.000 16.64 8.39 0.00 3.51
26 27 2.814280 AACGTACTAGTTGCAGCTGT 57.186 45.000 16.64 11.41 32.39 4.40
27 28 3.318017 AGAAACGTACTAGTTGCAGCTG 58.682 45.455 14.00 10.11 32.07 4.24
28 29 3.662247 AGAAACGTACTAGTTGCAGCT 57.338 42.857 8.54 8.54 32.07 4.24
29 30 4.232221 TGTAGAAACGTACTAGTTGCAGC 58.768 43.478 0.00 0.00 32.07 5.25
30 31 6.758593 TTTGTAGAAACGTACTAGTTGCAG 57.241 37.500 0.00 0.00 32.07 4.41
31 32 7.536895 TTTTTGTAGAAACGTACTAGTTGCA 57.463 32.000 0.00 0.00 32.07 4.08
52 53 7.716612 AGTTCTTTTACATAGCTGCAGTTTTT 58.283 30.769 16.64 1.54 0.00 1.94
53 54 7.277174 AGTTCTTTTACATAGCTGCAGTTTT 57.723 32.000 16.64 0.81 0.00 2.43
54 55 6.884280 AGTTCTTTTACATAGCTGCAGTTT 57.116 33.333 16.64 6.84 0.00 2.66
55 56 7.979444 TTAGTTCTTTTACATAGCTGCAGTT 57.021 32.000 16.64 12.62 0.00 3.16
56 57 7.066284 CCATTAGTTCTTTTACATAGCTGCAGT 59.934 37.037 16.64 4.79 0.00 4.40
57 58 7.280876 TCCATTAGTTCTTTTACATAGCTGCAG 59.719 37.037 10.11 10.11 0.00 4.41
58 59 7.109501 TCCATTAGTTCTTTTACATAGCTGCA 58.890 34.615 1.02 0.00 0.00 4.41
59 60 7.553881 TCCATTAGTTCTTTTACATAGCTGC 57.446 36.000 0.00 0.00 0.00 5.25
60 61 8.116753 CGTTCCATTAGTTCTTTTACATAGCTG 58.883 37.037 0.00 0.00 0.00 4.24
61 62 7.280205 CCGTTCCATTAGTTCTTTTACATAGCT 59.720 37.037 0.00 0.00 0.00 3.32
62 63 7.279313 TCCGTTCCATTAGTTCTTTTACATAGC 59.721 37.037 0.00 0.00 0.00 2.97
63 64 8.712285 TCCGTTCCATTAGTTCTTTTACATAG 57.288 34.615 0.00 0.00 0.00 2.23
64 65 9.158233 CTTCCGTTCCATTAGTTCTTTTACATA 57.842 33.333 0.00 0.00 0.00 2.29
65 66 7.361799 GCTTCCGTTCCATTAGTTCTTTTACAT 60.362 37.037 0.00 0.00 0.00 2.29
66 67 6.072893 GCTTCCGTTCCATTAGTTCTTTTACA 60.073 38.462 0.00 0.00 0.00 2.41
67 68 6.312487 GCTTCCGTTCCATTAGTTCTTTTAC 58.688 40.000 0.00 0.00 0.00 2.01
68 69 5.121142 CGCTTCCGTTCCATTAGTTCTTTTA 59.879 40.000 0.00 0.00 0.00 1.52
69 70 4.083484 CGCTTCCGTTCCATTAGTTCTTTT 60.083 41.667 0.00 0.00 0.00 2.27
70 71 3.435671 CGCTTCCGTTCCATTAGTTCTTT 59.564 43.478 0.00 0.00 0.00 2.52
71 72 3.000727 CGCTTCCGTTCCATTAGTTCTT 58.999 45.455 0.00 0.00 0.00 2.52
72 73 2.618053 CGCTTCCGTTCCATTAGTTCT 58.382 47.619 0.00 0.00 0.00 3.01
73 74 1.062148 GCGCTTCCGTTCCATTAGTTC 59.938 52.381 0.00 0.00 36.67 3.01
74 75 1.084289 GCGCTTCCGTTCCATTAGTT 58.916 50.000 0.00 0.00 36.67 2.24
75 76 0.036765 TGCGCTTCCGTTCCATTAGT 60.037 50.000 9.73 0.00 36.67 2.24
76 77 1.299541 ATGCGCTTCCGTTCCATTAG 58.700 50.000 9.73 0.00 36.67 1.73
77 78 2.206750 GTATGCGCTTCCGTTCCATTA 58.793 47.619 9.73 0.00 36.67 1.90
78 79 1.014352 GTATGCGCTTCCGTTCCATT 58.986 50.000 9.73 0.00 36.67 3.16
79 80 0.107897 TGTATGCGCTTCCGTTCCAT 60.108 50.000 9.73 0.00 36.67 3.41
80 81 0.320858 TTGTATGCGCTTCCGTTCCA 60.321 50.000 9.73 0.00 36.67 3.53
81 82 0.800012 TTTGTATGCGCTTCCGTTCC 59.200 50.000 9.73 0.00 36.67 3.62
82 83 2.604969 TTTTGTATGCGCTTCCGTTC 57.395 45.000 9.73 0.00 36.67 3.95
83 84 4.893424 ATATTTTGTATGCGCTTCCGTT 57.107 36.364 9.73 0.00 36.67 4.44
84 85 4.334203 TGAATATTTTGTATGCGCTTCCGT 59.666 37.500 9.73 0.00 36.67 4.69
85 86 4.670621 GTGAATATTTTGTATGCGCTTCCG 59.329 41.667 9.73 0.00 37.57 4.30
86 87 5.577835 TGTGAATATTTTGTATGCGCTTCC 58.422 37.500 9.73 0.00 0.00 3.46
87 88 6.345250 GCATGTGAATATTTTGTATGCGCTTC 60.345 38.462 9.73 0.00 31.52 3.86
88 89 5.459762 GCATGTGAATATTTTGTATGCGCTT 59.540 36.000 9.73 4.59 31.52 4.68
89 90 4.977963 GCATGTGAATATTTTGTATGCGCT 59.022 37.500 9.73 0.00 31.52 5.92
90 91 4.739228 TGCATGTGAATATTTTGTATGCGC 59.261 37.500 0.00 0.00 41.55 6.09
91 92 5.972973 AGTGCATGTGAATATTTTGTATGCG 59.027 36.000 16.23 0.00 41.55 4.73
92 93 6.753279 ACAGTGCATGTGAATATTTTGTATGC 59.247 34.615 15.25 15.25 41.91 3.14
93 94 7.969508 TGACAGTGCATGTGAATATTTTGTATG 59.030 33.333 6.06 0.00 44.17 2.39
94 95 8.054152 TGACAGTGCATGTGAATATTTTGTAT 57.946 30.769 6.06 0.00 44.17 2.29
95 96 7.446001 TGACAGTGCATGTGAATATTTTGTA 57.554 32.000 6.06 0.00 44.17 2.41
96 97 6.330004 TGACAGTGCATGTGAATATTTTGT 57.670 33.333 6.06 0.00 44.17 2.83
97 98 7.085746 TCTTGACAGTGCATGTGAATATTTTG 58.914 34.615 6.06 0.00 44.17 2.44
98 99 7.218228 TCTTGACAGTGCATGTGAATATTTT 57.782 32.000 6.06 0.00 44.17 1.82
99 100 6.822667 TCTTGACAGTGCATGTGAATATTT 57.177 33.333 6.06 0.00 44.17 1.40
100 101 6.624423 GCTTCTTGACAGTGCATGTGAATATT 60.624 38.462 6.06 0.00 44.17 1.28
101 102 5.163683 GCTTCTTGACAGTGCATGTGAATAT 60.164 40.000 6.06 0.00 44.17 1.28
102 103 4.154737 GCTTCTTGACAGTGCATGTGAATA 59.845 41.667 6.06 0.00 44.17 1.75
103 104 3.057736 GCTTCTTGACAGTGCATGTGAAT 60.058 43.478 6.06 0.00 44.17 2.57
104 105 2.291465 GCTTCTTGACAGTGCATGTGAA 59.709 45.455 6.06 4.04 44.17 3.18
105 106 1.875514 GCTTCTTGACAGTGCATGTGA 59.124 47.619 6.06 0.00 44.17 3.58
106 107 1.605232 TGCTTCTTGACAGTGCATGTG 59.395 47.619 6.52 2.36 44.17 3.21
108 109 3.570926 ATTGCTTCTTGACAGTGCATG 57.429 42.857 0.00 0.00 33.16 4.06
109 110 5.005740 TCTTATTGCTTCTTGACAGTGCAT 58.994 37.500 0.00 0.00 33.16 3.96
110 111 4.214119 GTCTTATTGCTTCTTGACAGTGCA 59.786 41.667 0.00 0.00 0.00 4.57
111 112 4.378874 GGTCTTATTGCTTCTTGACAGTGC 60.379 45.833 0.00 0.00 0.00 4.40
112 113 4.756642 TGGTCTTATTGCTTCTTGACAGTG 59.243 41.667 0.00 0.00 0.00 3.66
113 114 4.973168 TGGTCTTATTGCTTCTTGACAGT 58.027 39.130 0.00 0.00 0.00 3.55
114 115 4.394300 CCTGGTCTTATTGCTTCTTGACAG 59.606 45.833 0.00 0.00 0.00 3.51
115 116 4.041567 TCCTGGTCTTATTGCTTCTTGACA 59.958 41.667 0.00 0.00 0.00 3.58
116 117 4.579869 TCCTGGTCTTATTGCTTCTTGAC 58.420 43.478 0.00 0.00 0.00 3.18
117 118 4.908601 TCCTGGTCTTATTGCTTCTTGA 57.091 40.909 0.00 0.00 0.00 3.02
118 119 5.964958 TTTCCTGGTCTTATTGCTTCTTG 57.035 39.130 0.00 0.00 0.00 3.02
119 120 6.012745 ACATTTCCTGGTCTTATTGCTTCTT 58.987 36.000 0.00 0.00 0.00 2.52
120 121 5.574188 ACATTTCCTGGTCTTATTGCTTCT 58.426 37.500 0.00 0.00 0.00 2.85
121 122 5.649831 AGACATTTCCTGGTCTTATTGCTTC 59.350 40.000 0.00 0.00 41.40 3.86
122 123 5.574188 AGACATTTCCTGGTCTTATTGCTT 58.426 37.500 0.00 0.00 41.40 3.91
123 124 5.184892 AGACATTTCCTGGTCTTATTGCT 57.815 39.130 0.00 0.00 41.40 3.91
124 125 6.116126 AGTAGACATTTCCTGGTCTTATTGC 58.884 40.000 0.00 0.00 41.40 3.56
125 126 7.414540 GCAAGTAGACATTTCCTGGTCTTATTG 60.415 40.741 0.00 0.00 41.40 1.90
126 127 6.599638 GCAAGTAGACATTTCCTGGTCTTATT 59.400 38.462 0.00 0.00 41.40 1.40
127 128 6.069963 AGCAAGTAGACATTTCCTGGTCTTAT 60.070 38.462 0.00 0.00 41.40 1.73
128 129 5.248477 AGCAAGTAGACATTTCCTGGTCTTA 59.752 40.000 0.00 0.00 41.40 2.10
129 130 4.042187 AGCAAGTAGACATTTCCTGGTCTT 59.958 41.667 0.00 0.00 41.40 3.01
130 131 3.584848 AGCAAGTAGACATTTCCTGGTCT 59.415 43.478 0.00 0.00 45.72 3.85
131 132 3.944087 AGCAAGTAGACATTTCCTGGTC 58.056 45.455 0.00 0.00 0.00 4.02
132 133 4.327680 GAAGCAAGTAGACATTTCCTGGT 58.672 43.478 0.00 0.00 0.00 4.00
133 134 3.691609 GGAAGCAAGTAGACATTTCCTGG 59.308 47.826 0.00 0.00 33.12 4.45
134 135 3.691609 GGGAAGCAAGTAGACATTTCCTG 59.308 47.826 1.62 0.00 35.55 3.86
135 136 3.330701 TGGGAAGCAAGTAGACATTTCCT 59.669 43.478 1.62 0.00 35.55 3.36
136 137 3.440522 GTGGGAAGCAAGTAGACATTTCC 59.559 47.826 0.00 0.00 34.69 3.13
137 138 3.125316 CGTGGGAAGCAAGTAGACATTTC 59.875 47.826 0.00 0.00 0.00 2.17
138 139 3.074412 CGTGGGAAGCAAGTAGACATTT 58.926 45.455 0.00 0.00 0.00 2.32
139 140 2.301870 TCGTGGGAAGCAAGTAGACATT 59.698 45.455 0.00 0.00 0.00 2.71
140 141 1.899814 TCGTGGGAAGCAAGTAGACAT 59.100 47.619 0.00 0.00 0.00 3.06
141 142 1.334160 TCGTGGGAAGCAAGTAGACA 58.666 50.000 0.00 0.00 0.00 3.41
142 143 2.541556 GATCGTGGGAAGCAAGTAGAC 58.458 52.381 0.00 0.00 0.00 2.59
143 144 1.134367 CGATCGTGGGAAGCAAGTAGA 59.866 52.381 7.03 0.00 0.00 2.59
144 145 1.560923 CGATCGTGGGAAGCAAGTAG 58.439 55.000 7.03 0.00 0.00 2.57
145 146 0.459585 GCGATCGTGGGAAGCAAGTA 60.460 55.000 17.81 0.00 32.36 2.24
146 147 1.741770 GCGATCGTGGGAAGCAAGT 60.742 57.895 17.81 0.00 32.36 3.16
147 148 0.179111 TAGCGATCGTGGGAAGCAAG 60.179 55.000 17.81 0.00 33.86 4.01
148 149 0.248012 TTAGCGATCGTGGGAAGCAA 59.752 50.000 17.81 0.00 33.86 3.91
149 150 0.179111 CTTAGCGATCGTGGGAAGCA 60.179 55.000 17.81 0.00 33.86 3.91
150 151 1.491505 GCTTAGCGATCGTGGGAAGC 61.492 60.000 17.81 19.82 33.25 3.86
151 152 0.876342 GGCTTAGCGATCGTGGGAAG 60.876 60.000 17.81 14.75 0.00 3.46
152 153 1.143183 GGCTTAGCGATCGTGGGAA 59.857 57.895 17.81 5.11 0.00 3.97
153 154 1.735376 GAGGCTTAGCGATCGTGGGA 61.735 60.000 17.81 0.00 0.00 4.37
154 155 1.300233 GAGGCTTAGCGATCGTGGG 60.300 63.158 17.81 6.11 0.00 4.61
155 156 1.658717 CGAGGCTTAGCGATCGTGG 60.659 63.158 17.81 5.76 35.04 4.94
156 157 0.248498 TTCGAGGCTTAGCGATCGTG 60.248 55.000 22.94 6.12 38.75 4.35
157 158 0.248539 GTTCGAGGCTTAGCGATCGT 60.249 55.000 22.94 6.21 38.75 3.73
158 159 0.248498 TGTTCGAGGCTTAGCGATCG 60.248 55.000 19.65 19.65 38.91 3.69
159 160 1.855360 CTTGTTCGAGGCTTAGCGATC 59.145 52.381 0.00 0.00 36.31 3.69
160 161 1.927895 CTTGTTCGAGGCTTAGCGAT 58.072 50.000 0.00 0.00 36.31 4.58
161 162 0.736325 GCTTGTTCGAGGCTTAGCGA 60.736 55.000 0.00 0.00 34.32 4.93
162 163 1.696832 GGCTTGTTCGAGGCTTAGCG 61.697 60.000 0.00 0.00 39.00 4.26
163 164 1.369839 GGGCTTGTTCGAGGCTTAGC 61.370 60.000 12.25 0.00 41.57 3.09
164 165 0.036388 TGGGCTTGTTCGAGGCTTAG 60.036 55.000 12.25 0.00 41.57 2.18
165 166 0.618458 ATGGGCTTGTTCGAGGCTTA 59.382 50.000 12.25 4.28 41.57 3.09
166 167 0.618458 TATGGGCTTGTTCGAGGCTT 59.382 50.000 12.25 4.82 41.57 4.35
167 168 0.839946 ATATGGGCTTGTTCGAGGCT 59.160 50.000 12.25 0.00 41.57 4.58
168 169 1.680338 AATATGGGCTTGTTCGAGGC 58.320 50.000 5.22 5.22 41.16 4.70
169 170 3.443681 ACAAAATATGGGCTTGTTCGAGG 59.556 43.478 0.00 0.00 28.99 4.63
170 171 4.701956 ACAAAATATGGGCTTGTTCGAG 57.298 40.909 0.00 0.00 28.99 4.04
171 172 5.004448 TGTACAAAATATGGGCTTGTTCGA 58.996 37.500 0.00 0.00 35.09 3.71
172 173 5.106317 ACTGTACAAAATATGGGCTTGTTCG 60.106 40.000 0.00 0.00 35.09 3.95
173 174 6.267496 ACTGTACAAAATATGGGCTTGTTC 57.733 37.500 0.00 0.00 35.09 3.18
174 175 5.185056 GGACTGTACAAAATATGGGCTTGTT 59.815 40.000 0.00 0.00 35.09 2.83
175 176 4.705023 GGACTGTACAAAATATGGGCTTGT 59.295 41.667 0.00 0.00 37.13 3.16
176 177 4.949856 AGGACTGTACAAAATATGGGCTTG 59.050 41.667 0.00 0.00 0.00 4.01
177 178 5.193099 AGGACTGTACAAAATATGGGCTT 57.807 39.130 0.00 0.00 0.00 4.35
178 179 4.862641 AGGACTGTACAAAATATGGGCT 57.137 40.909 0.00 0.00 0.00 5.19
179 180 5.914898 AAAGGACTGTACAAAATATGGGC 57.085 39.130 0.00 0.00 0.00 5.36
180 181 7.068103 TGCATAAAGGACTGTACAAAATATGGG 59.932 37.037 0.00 0.00 0.00 4.00
181 182 7.995289 TGCATAAAGGACTGTACAAAATATGG 58.005 34.615 0.00 0.00 0.00 2.74
185 186 9.243105 ACTTATGCATAAAGGACTGTACAAAAT 57.757 29.630 19.32 0.00 0.00 1.82
186 187 8.630054 ACTTATGCATAAAGGACTGTACAAAA 57.370 30.769 19.32 0.00 0.00 2.44
187 188 8.630054 AACTTATGCATAAAGGACTGTACAAA 57.370 30.769 19.32 0.00 0.00 2.83
188 189 9.727859 TTAACTTATGCATAAAGGACTGTACAA 57.272 29.630 19.32 8.27 0.00 2.41
189 190 9.158233 GTTAACTTATGCATAAAGGACTGTACA 57.842 33.333 19.32 0.00 0.00 2.90
190 191 9.158233 TGTTAACTTATGCATAAAGGACTGTAC 57.842 33.333 19.32 9.47 0.00 2.90
191 192 9.727859 TTGTTAACTTATGCATAAAGGACTGTA 57.272 29.630 19.32 2.90 0.00 2.74
192 193 8.512138 GTTGTTAACTTATGCATAAAGGACTGT 58.488 33.333 19.32 10.20 0.00 3.55
193 194 8.511321 TGTTGTTAACTTATGCATAAAGGACTG 58.489 33.333 19.32 9.60 0.00 3.51
194 195 8.512138 GTGTTGTTAACTTATGCATAAAGGACT 58.488 33.333 19.32 5.82 0.00 3.85
195 196 8.512138 AGTGTTGTTAACTTATGCATAAAGGAC 58.488 33.333 19.32 14.86 0.00 3.85
196 197 8.630054 AGTGTTGTTAACTTATGCATAAAGGA 57.370 30.769 19.32 5.35 0.00 3.36
197 198 9.128107 CAAGTGTTGTTAACTTATGCATAAAGG 57.872 33.333 19.32 11.60 35.70 3.11
198 199 9.891828 TCAAGTGTTGTTAACTTATGCATAAAG 57.108 29.630 19.32 15.04 35.70 1.85
201 202 9.891828 CTTTCAAGTGTTGTTAACTTATGCATA 57.108 29.630 1.16 1.16 35.70 3.14
202 203 8.413229 ACTTTCAAGTGTTGTTAACTTATGCAT 58.587 29.630 3.79 3.79 37.98 3.96
203 204 7.767261 ACTTTCAAGTGTTGTTAACTTATGCA 58.233 30.769 7.22 0.00 37.98 3.96
204 205 9.893305 ATACTTTCAAGTGTTGTTAACTTATGC 57.107 29.630 7.22 0.00 40.07 3.14
213 214 9.950680 CTCAATGTTATACTTTCAAGTGTTGTT 57.049 29.630 2.26 0.00 40.07 2.83
214 215 9.337396 TCTCAATGTTATACTTTCAAGTGTTGT 57.663 29.630 2.26 0.00 40.07 3.32
215 216 9.817365 CTCTCAATGTTATACTTTCAAGTGTTG 57.183 33.333 2.26 0.00 40.07 3.33
216 217 9.003658 CCTCTCAATGTTATACTTTCAAGTGTT 57.996 33.333 2.26 0.00 40.07 3.32
217 218 8.375506 TCCTCTCAATGTTATACTTTCAAGTGT 58.624 33.333 2.26 0.00 40.07 3.55
218 219 8.777865 TCCTCTCAATGTTATACTTTCAAGTG 57.222 34.615 2.26 0.00 40.07 3.16
229 230 7.495934 CCAATTAGACGTTCCTCTCAATGTTAT 59.504 37.037 0.00 0.00 0.00 1.89
233 234 5.063944 CACCAATTAGACGTTCCTCTCAATG 59.936 44.000 0.00 0.00 0.00 2.82
275 276 7.907389 ACTAACCTCAATAGTTCAGATCACAA 58.093 34.615 0.00 0.00 29.38 3.33
282 283 8.524487 ACTGTCTAACTAACCTCAATAGTTCAG 58.476 37.037 2.48 7.01 41.44 3.02
284 285 7.275999 GCACTGTCTAACTAACCTCAATAGTTC 59.724 40.741 2.48 0.00 41.44 3.01
285 286 7.097834 GCACTGTCTAACTAACCTCAATAGTT 58.902 38.462 4.57 4.57 43.87 2.24
291 292 5.715279 AGTATGCACTGTCTAACTAACCTCA 59.285 40.000 0.00 0.00 32.25 3.86
295 296 8.480643 AATTGAGTATGCACTGTCTAACTAAC 57.519 34.615 0.00 0.00 34.21 2.34
298 299 9.672673 ATTTAATTGAGTATGCACTGTCTAACT 57.327 29.630 0.00 0.00 34.21 2.24
384 385 8.707839 TGACAAATAAAAATTCGGAATTTCTGC 58.292 29.630 24.45 14.11 40.05 4.26
393 394 9.632807 TGTAGGAAATGACAAATAAAAATTCGG 57.367 29.630 0.00 0.00 0.00 4.30
414 415 7.477144 TGCGTATCAAGTATTTTGATGTAGG 57.523 36.000 11.53 1.80 39.30 3.18
435 438 0.584876 ATGCATCGTGATCACATGCG 59.415 50.000 33.29 20.94 42.83 4.73
505 508 2.771372 ACCATTTTGGGAGTGCAAAACT 59.229 40.909 0.00 0.00 43.37 2.66
512 515 4.235079 TCTCCATACCATTTTGGGAGTG 57.765 45.455 0.00 0.00 43.37 3.51
515 518 3.790976 TGGATCTCCATACCATTTTGGGA 59.209 43.478 0.00 0.00 40.98 4.37
552 555 8.344446 AGTTAAAAACTGACAGTGGTTTAAGT 57.656 30.769 24.34 24.05 41.01 2.24
562 565 7.352739 ACATTCGCTAAGTTAAAAACTGACAG 58.647 34.615 0.00 0.00 41.91 3.51
595 598 6.641169 TCAGATCTAGATGTACATCCACAC 57.359 41.667 28.26 17.21 38.58 3.82
626 629 6.811665 TGATAAACATATCTATGTAGCCACGC 59.188 38.462 3.39 0.00 45.55 5.34
636 639 9.579768 GATCACGAGCTTGATAAACATATCTAT 57.420 33.333 8.31 0.00 36.30 1.98
638 641 6.870965 GGATCACGAGCTTGATAAACATATCT 59.129 38.462 8.31 0.00 36.30 1.98
710 713 1.815003 GAAGTGAACCCATCAGGCAAG 59.185 52.381 0.00 0.00 39.19 4.01
736 739 7.093201 ACGGAGGTAGTACTATGGAATTTTGAA 60.093 37.037 5.75 0.00 0.00 2.69
745 748 2.149578 CGGACGGAGGTAGTACTATGG 58.850 57.143 5.75 0.00 0.00 2.74
748 751 1.496060 TCCGGACGGAGGTAGTACTA 58.504 55.000 9.76 0.00 39.76 1.82
754 757 1.756538 GGTTAATTCCGGACGGAGGTA 59.243 52.381 13.64 7.36 46.06 3.08
756 759 0.529119 CGGTTAATTCCGGACGGAGG 60.529 60.000 13.64 0.00 46.06 4.30
777 780 4.143200 CGCTTAGTTACGCTCATTTCAACA 60.143 41.667 0.00 0.00 0.00 3.33
779 782 3.991773 ACGCTTAGTTACGCTCATTTCAA 59.008 39.130 0.00 0.00 0.00 2.69
789 792 5.051508 ACACACTAAAACACGCTTAGTTACG 60.052 40.000 0.00 0.00 37.47 3.18
793 796 6.907206 TTTACACACTAAAACACGCTTAGT 57.093 33.333 0.00 0.00 39.62 2.24
797 800 6.847956 TGTATTTACACACTAAAACACGCT 57.152 33.333 0.00 0.00 0.00 5.07
811 814 5.929415 TGTCGCTGAAATGAGTGTATTTACA 59.071 36.000 0.00 0.00 30.78 2.41
812 815 6.090898 ACTGTCGCTGAAATGAGTGTATTTAC 59.909 38.462 0.00 0.00 30.78 2.01
813 816 6.163476 ACTGTCGCTGAAATGAGTGTATTTA 58.837 36.000 0.00 0.00 30.78 1.40
814 817 4.997395 ACTGTCGCTGAAATGAGTGTATTT 59.003 37.500 0.00 0.00 33.19 1.40
815 818 4.569943 ACTGTCGCTGAAATGAGTGTATT 58.430 39.130 0.00 0.00 0.00 1.89
816 819 4.193826 ACTGTCGCTGAAATGAGTGTAT 57.806 40.909 0.00 0.00 0.00 2.29
817 820 3.660501 ACTGTCGCTGAAATGAGTGTA 57.339 42.857 0.00 0.00 0.00 2.90
818 821 2.533266 ACTGTCGCTGAAATGAGTGT 57.467 45.000 0.00 0.00 0.00 3.55
819 822 4.990543 TTAACTGTCGCTGAAATGAGTG 57.009 40.909 0.00 0.00 0.00 3.51
820 823 5.122396 GGAATTAACTGTCGCTGAAATGAGT 59.878 40.000 0.00 0.00 0.00 3.41
821 824 5.563842 GGAATTAACTGTCGCTGAAATGAG 58.436 41.667 0.00 0.00 0.00 2.90
822 825 4.092821 CGGAATTAACTGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
823 826 4.334443 CGGAATTAACTGTCGCTGAAATG 58.666 43.478 0.00 0.00 0.00 2.32
824 827 3.374058 CCGGAATTAACTGTCGCTGAAAT 59.626 43.478 0.00 0.00 0.00 2.17
825 828 2.739913 CCGGAATTAACTGTCGCTGAAA 59.260 45.455 0.00 0.00 0.00 2.69
826 829 2.028839 TCCGGAATTAACTGTCGCTGAA 60.029 45.455 0.00 0.00 0.00 3.02
827 830 1.546923 TCCGGAATTAACTGTCGCTGA 59.453 47.619 0.00 0.00 0.00 4.26
828 831 1.659098 GTCCGGAATTAACTGTCGCTG 59.341 52.381 5.23 0.00 0.00 5.18
829 832 1.734707 CGTCCGGAATTAACTGTCGCT 60.735 52.381 5.23 0.00 0.00 4.93
830 833 0.643820 CGTCCGGAATTAACTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
831 834 0.643820 GCGTCCGGAATTAACTGTCG 59.356 55.000 5.23 2.80 0.00 4.35
832 835 0.643820 CGCGTCCGGAATTAACTGTC 59.356 55.000 5.23 0.00 0.00 3.51
833 836 2.745728 CGCGTCCGGAATTAACTGT 58.254 52.632 5.23 0.00 0.00 3.55
849 852 2.753043 TACACTCCCTCCGTCCGC 60.753 66.667 0.00 0.00 0.00 5.54
855 858 2.760385 AGCGCCTACACTCCCTCC 60.760 66.667 2.29 0.00 0.00 4.30
861 864 1.226746 GTTGTTTGAGCGCCTACACT 58.773 50.000 2.29 0.00 0.00 3.55
863 866 0.887387 GGGTTGTTTGAGCGCCTACA 60.887 55.000 2.29 0.00 0.00 2.74
864 867 1.873863 GGGTTGTTTGAGCGCCTAC 59.126 57.895 2.29 0.00 0.00 3.18
868 871 3.284449 ACCGGGTTGTTTGAGCGC 61.284 61.111 6.32 0.00 0.00 5.92
882 885 2.406616 GGCATGTTAGGCACCACCG 61.407 63.158 0.00 0.00 46.52 4.94
890 893 5.183904 GGAGGCAATTTATAGGCATGTTAGG 59.816 44.000 0.00 0.00 0.00 2.69
909 912 0.467804 GAGATGGAGTGAAGGGAGGC 59.532 60.000 0.00 0.00 0.00 4.70
937 940 1.112916 GGGTTCTTGTGTGGGTTGGG 61.113 60.000 0.00 0.00 0.00 4.12
963 966 3.753797 GAGAGTAAGGAAAGCTGGTTTGG 59.246 47.826 9.87 0.00 0.00 3.28
967 970 2.526432 TCGAGAGTAAGGAAAGCTGGT 58.474 47.619 0.00 0.00 0.00 4.00
969 972 5.004922 AGATTCGAGAGTAAGGAAAGCTG 57.995 43.478 0.00 0.00 0.00 4.24
992 995 2.842256 GCCTTGGCCATGCTGATCG 61.842 63.158 18.02 3.71 0.00 3.69
998 1001 2.046988 GGTTTGCCTTGGCCATGC 60.047 61.111 18.36 18.36 0.00 4.06
1017 1020 3.692101 CAGCGGTGGTTTGGTAATATGAA 59.308 43.478 6.74 0.00 0.00 2.57
1068 1071 2.227388 CACAAACAGGTGGAAGAGATGC 59.773 50.000 0.00 0.00 35.13 3.91
1092 1095 2.121564 TTGTTGCTTCGAGCTGCTGC 62.122 55.000 7.01 7.62 42.97 5.25
1194 1197 1.678728 GCCGTGATTTCAGGACCATCA 60.679 52.381 0.00 0.00 33.92 3.07
1203 1206 3.791973 ACAACTTTTGCCGTGATTTCA 57.208 38.095 0.00 0.00 0.00 2.69
1206 1209 2.200899 GCAACAACTTTTGCCGTGATT 58.799 42.857 0.00 0.00 45.22 2.57
1208 1211 3.337398 GCAACAACTTTTGCCGTGA 57.663 47.368 0.00 0.00 45.22 4.35
1316 1319 5.614923 TTTTCTGAAAAATGCATGCATGG 57.385 34.783 32.79 17.67 36.68 3.66
1442 1445 1.877443 CCTTCGTCGGAAACCAAATGT 59.123 47.619 0.00 0.00 0.00 2.71
1454 1457 0.870307 CTACCCATTCGCCTTCGTCG 60.870 60.000 0.00 0.00 36.96 5.12
1463 1466 1.472026 CCACCCGTAACTACCCATTCG 60.472 57.143 0.00 0.00 0.00 3.34
1475 1478 2.601067 TCGCCAGTTCCACCCGTA 60.601 61.111 0.00 0.00 0.00 4.02
1514 1517 5.935945 TCCTTGATTTTCTTGTAGGTGACA 58.064 37.500 0.00 0.00 35.78 3.58
1547 1550 2.300152 ACGAAGCTCTCTGATGTTTCCA 59.700 45.455 0.00 0.00 0.00 3.53
1670 1688 6.471233 TGTGTCCAAACCATGACAAAAATA 57.529 33.333 0.00 0.00 0.00 1.40
1686 1704 2.957680 ACTCACATTTTGCATGTGTCCA 59.042 40.909 16.38 0.00 46.82 4.02
1777 1801 2.561037 CCACGGCCCAACCTTTGTC 61.561 63.158 0.00 0.00 35.61 3.18
1812 1869 2.354003 GCCTGTGGGATTTCAAATGGTG 60.354 50.000 0.00 0.00 33.58 4.17
1826 1883 1.260538 TGAGGTAGCTCTGCCTGTGG 61.261 60.000 21.80 0.00 45.93 4.17
1839 1896 3.418995 ACACTTTCTAGACGCTGAGGTA 58.581 45.455 0.00 0.00 0.00 3.08
1874 1931 4.044426 GCAATGGAATCAATAACTTCGGC 58.956 43.478 0.00 0.00 0.00 5.54
1875 1932 4.339247 AGGCAATGGAATCAATAACTTCGG 59.661 41.667 0.00 0.00 0.00 4.30
1889 1946 2.419990 CGATGTAGGTGAAGGCAATGGA 60.420 50.000 0.00 0.00 0.00 3.41
1961 2018 1.185618 TCACTCACCGGCTGCTTAGT 61.186 55.000 0.00 0.00 0.00 2.24
1962 2019 0.037326 TTCACTCACCGGCTGCTTAG 60.037 55.000 0.00 0.00 0.00 2.18
1963 2020 0.394938 TTTCACTCACCGGCTGCTTA 59.605 50.000 0.00 0.00 0.00 3.09
1982 2039 7.404481 AGCCCATTATTCAACAAATCCAAAAT 58.596 30.769 0.00 0.00 0.00 1.82
1986 2043 5.022122 TGAGCCCATTATTCAACAAATCCA 58.978 37.500 0.00 0.00 0.00 3.41
1988 2045 5.127682 ACCTGAGCCCATTATTCAACAAATC 59.872 40.000 0.00 0.00 0.00 2.17
1989 2046 5.025453 ACCTGAGCCCATTATTCAACAAAT 58.975 37.500 0.00 0.00 0.00 2.32
1992 2049 3.010027 TGACCTGAGCCCATTATTCAACA 59.990 43.478 0.00 0.00 0.00 3.33
1997 2077 2.785269 TCCATGACCTGAGCCCATTATT 59.215 45.455 0.00 0.00 0.00 1.40
2001 2081 0.769873 GATCCATGACCTGAGCCCAT 59.230 55.000 0.00 0.00 0.00 4.00
2004 2084 0.543277 TGTGATCCATGACCTGAGCC 59.457 55.000 0.00 0.00 0.00 4.70
2010 2090 9.896645 ACATTATTCTATATGTGATCCATGACC 57.103 33.333 0.00 0.00 33.90 4.02
2028 2108 7.023575 GTGGTGTCAGATTGTCAACATTATTC 58.976 38.462 0.00 0.00 35.74 1.75
2031 2111 5.372373 TGTGGTGTCAGATTGTCAACATTA 58.628 37.500 0.00 0.00 35.74 1.90
2032 2112 4.206375 TGTGGTGTCAGATTGTCAACATT 58.794 39.130 0.00 0.00 35.74 2.71
2033 2113 3.819368 TGTGGTGTCAGATTGTCAACAT 58.181 40.909 0.00 0.00 35.74 2.71
2034 2114 3.274095 TGTGGTGTCAGATTGTCAACA 57.726 42.857 0.00 0.00 31.10 3.33
2038 2118 7.011482 GGAGTAAATATGTGGTGTCAGATTGTC 59.989 40.741 0.00 0.00 31.08 3.18
2046 2126 5.354234 CACAAGGGAGTAAATATGTGGTGTC 59.646 44.000 0.00 0.00 35.67 3.67
2058 2138 4.650972 ATTAAGCACCACAAGGGAGTAA 57.349 40.909 0.00 0.00 41.15 2.24
2076 2156 3.702548 TGCCTTCGCTCCTAGTGTTATTA 59.297 43.478 0.00 0.00 35.36 0.98
2078 2158 2.108168 TGCCTTCGCTCCTAGTGTTAT 58.892 47.619 0.00 0.00 35.36 1.89
2082 2162 2.029838 ATTTGCCTTCGCTCCTAGTG 57.970 50.000 0.00 0.00 35.36 2.74
2087 2167 5.648092 ACCATATATTATTTGCCTTCGCTCC 59.352 40.000 0.00 0.00 35.36 4.70
2103 2183 9.791801 TGTGCAAGTGATTATAACACCATATAT 57.208 29.630 11.94 0.00 38.82 0.86
2109 2189 6.095440 AGGAATGTGCAAGTGATTATAACACC 59.905 38.462 11.94 0.00 38.82 4.16
2127 2207 4.164988 CAGGATCTGTAAGGGAAGGAATGT 59.835 45.833 0.00 0.00 0.00 2.71
2136 2216 0.835941 AGCTGCAGGATCTGTAAGGG 59.164 55.000 17.12 0.00 33.43 3.95
2148 2228 3.571119 CGAAGGACCAAGCTGCAG 58.429 61.111 10.11 10.11 0.00 4.41
2165 2245 4.582240 CCAAATATTTCCTTCAGGCTCTCC 59.418 45.833 0.00 0.00 34.44 3.71
2170 2250 3.195396 TGTGCCAAATATTTCCTTCAGGC 59.805 43.478 14.86 14.86 41.15 4.85
2172 2252 5.170748 GGTTGTGCCAAATATTTCCTTCAG 58.829 41.667 0.00 0.00 37.17 3.02
2206 2286 9.685276 AAAGTGATGTGACAATATTCAATCCTA 57.315 29.630 0.00 0.00 0.00 2.94
2212 2292 7.943079 ATGGAAAGTGATGTGACAATATTCA 57.057 32.000 0.00 0.00 0.00 2.57
2217 2297 5.535783 TGACAATGGAAAGTGATGTGACAAT 59.464 36.000 0.00 0.00 0.00 2.71
2287 2367 1.835531 CAGTGGTACGGAAAGGGGTAT 59.164 52.381 0.00 0.00 0.00 2.73
2291 2371 1.740296 CGCAGTGGTACGGAAAGGG 60.740 63.158 0.00 0.00 0.00 3.95
2351 2431 2.364970 TCCAAGCTGGTCAACAAATTGG 59.635 45.455 0.00 0.00 42.20 3.16
2423 2503 1.547372 TGACGGGTAAAGCACTAGGTC 59.453 52.381 0.00 0.00 0.00 3.85
2426 2506 3.802948 AGATGACGGGTAAAGCACTAG 57.197 47.619 0.00 0.00 0.00 2.57
2428 2508 3.335579 GAAAGATGACGGGTAAAGCACT 58.664 45.455 0.00 0.00 0.00 4.40
2429 2509 2.418976 GGAAAGATGACGGGTAAAGCAC 59.581 50.000 0.00 0.00 0.00 4.40
2438 2518 1.281899 GAGAAGCGGAAAGATGACGG 58.718 55.000 0.00 0.00 0.00 4.79
2444 2524 2.548067 GGAACACTGAGAAGCGGAAAGA 60.548 50.000 0.00 0.00 0.00 2.52
2448 2528 0.318441 CTGGAACACTGAGAAGCGGA 59.682 55.000 0.00 0.00 0.00 5.54
2449 2529 1.294659 GCTGGAACACTGAGAAGCGG 61.295 60.000 0.00 0.00 0.00 5.52
2450 2530 0.601046 TGCTGGAACACTGAGAAGCG 60.601 55.000 0.00 0.00 33.35 4.68
2451 2531 1.597742 TTGCTGGAACACTGAGAAGC 58.402 50.000 0.00 0.00 0.00 3.86
2452 2532 5.240891 TCTTATTGCTGGAACACTGAGAAG 58.759 41.667 0.00 0.00 0.00 2.85
2453 2533 5.227569 TCTTATTGCTGGAACACTGAGAA 57.772 39.130 0.00 0.00 0.00 2.87
2454 2534 4.890158 TCTTATTGCTGGAACACTGAGA 57.110 40.909 0.00 0.00 0.00 3.27
2455 2535 4.394300 CCTTCTTATTGCTGGAACACTGAG 59.606 45.833 0.00 0.00 0.00 3.35
2456 2536 4.326826 CCTTCTTATTGCTGGAACACTGA 58.673 43.478 0.00 0.00 0.00 3.41
2457 2537 3.441572 CCCTTCTTATTGCTGGAACACTG 59.558 47.826 0.00 0.00 0.00 3.66
2488 2568 6.310941 AGTACATGAGACTAGGACAGCATAT 58.689 40.000 0.00 0.00 0.00 1.78
2490 2570 4.541705 AGTACATGAGACTAGGACAGCAT 58.458 43.478 0.00 0.00 0.00 3.79
2491 2571 3.969553 AGTACATGAGACTAGGACAGCA 58.030 45.455 0.00 0.00 0.00 4.41
2492 2572 5.127491 AGTAGTACATGAGACTAGGACAGC 58.873 45.833 0.00 0.00 30.08 4.40
2493 2573 6.459024 GCAAGTAGTACATGAGACTAGGACAG 60.459 46.154 9.65 0.00 30.08 3.51
2501 2581 7.602517 AATGAAAGCAAGTAGTACATGAGAC 57.397 36.000 9.65 0.00 0.00 3.36
2522 2602 7.983484 AGCCAAAAGGCATAGAAGATAAAAATG 59.017 33.333 9.42 0.00 37.35 2.32
2537 2617 3.918544 GCCGATAGCCAAAAGGCA 58.081 55.556 9.42 0.00 46.48 4.75
2544 2624 2.758327 ACACCGAGCCGATAGCCA 60.758 61.111 0.00 0.00 45.47 4.75
2546 2626 2.279517 CCACACCGAGCCGATAGC 60.280 66.667 0.00 0.00 44.25 2.97
2547 2627 2.279517 GCCACACCGAGCCGATAG 60.280 66.667 0.00 0.00 0.00 2.08
2557 2642 5.710567 AGAACTTTATTTCTAAGGCCACACC 59.289 40.000 5.01 0.00 33.89 4.16
2588 2673 9.832445 GGGATAAGATTACATTCAACACTCTTA 57.168 33.333 0.00 0.00 0.00 2.10
2589 2674 8.552296 AGGGATAAGATTACATTCAACACTCTT 58.448 33.333 0.00 0.00 0.00 2.85
2590 2675 7.989741 CAGGGATAAGATTACATTCAACACTCT 59.010 37.037 0.00 0.00 0.00 3.24
2591 2676 7.254932 GCAGGGATAAGATTACATTCAACACTC 60.255 40.741 0.00 0.00 0.00 3.51
2592 2677 6.543831 GCAGGGATAAGATTACATTCAACACT 59.456 38.462 0.00 0.00 0.00 3.55
2593 2678 6.511767 CGCAGGGATAAGATTACATTCAACAC 60.512 42.308 0.00 0.00 0.00 3.32
2594 2679 5.527214 CGCAGGGATAAGATTACATTCAACA 59.473 40.000 0.00 0.00 0.00 3.33
2595 2680 5.527582 ACGCAGGGATAAGATTACATTCAAC 59.472 40.000 0.00 0.00 0.00 3.18
2596 2681 5.680619 ACGCAGGGATAAGATTACATTCAA 58.319 37.500 0.00 0.00 0.00 2.69
2597 2682 5.163353 TGACGCAGGGATAAGATTACATTCA 60.163 40.000 0.00 0.00 0.00 2.57
2598 2683 5.297547 TGACGCAGGGATAAGATTACATTC 58.702 41.667 0.00 0.00 0.00 2.67
2599 2684 5.290493 TGACGCAGGGATAAGATTACATT 57.710 39.130 0.00 0.00 0.00 2.71
2600 2685 4.955811 TGACGCAGGGATAAGATTACAT 57.044 40.909 0.00 0.00 0.00 2.29
2601 2686 4.100963 ACATGACGCAGGGATAAGATTACA 59.899 41.667 0.00 0.00 0.00 2.41
2602 2687 4.632153 ACATGACGCAGGGATAAGATTAC 58.368 43.478 0.00 0.00 0.00 1.89
2603 2688 4.955811 ACATGACGCAGGGATAAGATTA 57.044 40.909 0.00 0.00 0.00 1.75
2604 2689 3.845781 ACATGACGCAGGGATAAGATT 57.154 42.857 0.00 0.00 0.00 2.40
2605 2690 3.134623 TGAACATGACGCAGGGATAAGAT 59.865 43.478 0.00 0.00 0.00 2.40
2606 2691 2.499693 TGAACATGACGCAGGGATAAGA 59.500 45.455 0.00 0.00 0.00 2.10
2607 2692 2.905075 TGAACATGACGCAGGGATAAG 58.095 47.619 0.00 0.00 0.00 1.73
2608 2693 3.342377 TTGAACATGACGCAGGGATAA 57.658 42.857 0.00 0.00 0.00 1.75
2609 2694 3.558931 ATTGAACATGACGCAGGGATA 57.441 42.857 0.00 0.00 0.00 2.59
2610 2695 2.425143 ATTGAACATGACGCAGGGAT 57.575 45.000 0.00 0.00 0.00 3.85
2611 2696 3.558931 ATATTGAACATGACGCAGGGA 57.441 42.857 0.00 0.00 0.00 4.20
2612 2697 4.756642 ACATATATTGAACATGACGCAGGG 59.243 41.667 0.00 0.00 0.00 4.45
2613 2698 5.682869 CACATATATTGAACATGACGCAGG 58.317 41.667 0.00 0.00 0.00 4.85
2614 2699 5.049886 AGCACATATATTGAACATGACGCAG 60.050 40.000 0.00 0.00 0.00 5.18
2615 2700 4.815846 AGCACATATATTGAACATGACGCA 59.184 37.500 0.00 0.00 0.00 5.24
2616 2701 5.348418 AGCACATATATTGAACATGACGC 57.652 39.130 0.00 0.00 0.00 5.19
2617 2702 8.711457 TCATTAGCACATATATTGAACATGACG 58.289 33.333 0.00 0.00 0.00 4.35
2647 2732 9.890629 ACATTCAACACTCTTATCAATAAGCTA 57.109 29.630 5.11 0.00 39.60 3.32
2648 2733 8.798859 ACATTCAACACTCTTATCAATAAGCT 57.201 30.769 5.11 0.00 39.60 3.74
2705 2790 9.973450 AGCAGTACTTCACTATATTCATTAGTG 57.027 33.333 0.00 4.81 41.71 2.74
2743 2828 4.917906 GGCTCTCCCAAATATCAGGTAT 57.082 45.455 0.00 0.00 0.00 2.73
2757 2842 5.489792 TTATTATGTCTGATGGGCTCTCC 57.510 43.478 0.00 0.00 0.00 3.71
2784 2869 7.812690 TGCATGCTTGATGAGAATATACTTT 57.187 32.000 20.33 0.00 33.31 2.66
2787 2872 6.091849 ACGATGCATGCTTGATGAGAATATAC 59.908 38.462 20.33 0.00 33.31 1.47
2815 2900 7.774157 TGATGTTGCAATGCCCATATTATTTTT 59.226 29.630 0.59 0.00 0.00 1.94
2816 2901 7.281098 TGATGTTGCAATGCCCATATTATTTT 58.719 30.769 0.59 0.00 0.00 1.82
2817 2902 6.828788 TGATGTTGCAATGCCCATATTATTT 58.171 32.000 0.59 0.00 0.00 1.40
2818 2903 6.422344 TGATGTTGCAATGCCCATATTATT 57.578 33.333 0.59 0.00 0.00 1.40
2821 2906 4.637276 CATGATGTTGCAATGCCCATATT 58.363 39.130 0.59 0.00 0.00 1.28
2864 2949 8.962111 GTGTTTGAGAATTTTGAGAGTTTGATC 58.038 33.333 0.00 0.00 0.00 2.92
2910 2995 3.142174 ACTACAGTTTTGAAGCAGGCTC 58.858 45.455 0.00 0.00 0.00 4.70
2915 3000 3.708563 GGCAACTACAGTTTTGAAGCA 57.291 42.857 0.00 0.00 35.83 3.91
2966 3051 6.100668 GCTAGGCTAGGATAGTTTATTTCGG 58.899 44.000 22.40 0.00 41.93 4.30
2967 3052 6.071278 AGGCTAGGCTAGGATAGTTTATTTCG 60.071 42.308 18.73 0.00 41.93 3.46
2981 3066 0.607620 GCTCATGGAGGCTAGGCTAG 59.392 60.000 20.27 17.33 0.00 3.42
3108 3193 2.618241 ACTTCATGTTGTCGTGCACATT 59.382 40.909 18.64 0.00 33.90 2.71
3273 3409 2.699954 ACTATTCCACGACTTTGCAGG 58.300 47.619 0.00 0.00 0.00 4.85
3337 3473 1.605710 GGTGCGATTCATCCATTCTGG 59.394 52.381 0.00 0.00 39.43 3.86
3339 3475 2.947652 CAAGGTGCGATTCATCCATTCT 59.052 45.455 0.00 0.00 0.00 2.40
3351 3487 0.888736 CCATGTCCAACAAGGTGCGA 60.889 55.000 0.00 0.00 39.02 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.