>input_sequence_52637
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------------------------------------------ATGGCCAAGGCAAACCCTTCATATTACCAAACCACCGC
TGCGGTTAGCGCACCGGTCCAGTACCAGGAGCATCTCTTCCACCTGTTTGTGCAGCAGCAGCTCGAAGCAACAAATGGTG
CTAACCAGCTCATTACAGTGAACCCAAAGCTTCCCCAAGGGTTCGGTGTCACCGTTGCTACTGACTGGGACATCCGTGAT
GGTCCTGAAATCACGGCAAAAGTTGTTGCGCGTGCACAAGGCCTGCATCAAGGGTCCGGCAAGAGCAGCGGAGCCTGGTT
TATGTCGTTCAACACAGTGTTCACCGATGAGAGGTTCGCCATGCATGCATTTTTCAGAAAATGTTCCCTTTGAACTTATG
TTGCCATACTTATTTCTTTTTTGCGTGTGTGATGCTTACAAACTTGTGTTTTAGGTTTAAGGGGTCCTCCCTCAGTGTGC
AAGGACATTTGGTTTCCGACGAAGGCGAATGGGTAGTTACGGGTGGAACTGGCGAGTTCGCTTTTGCACAAGGTGTTGTC
ACCTACAAGAAAATCAAGGAATTGGCAGGTGGAAACATCAGAGAGCTTCGTTTCCGTGTTGTGTGCTTCAACTTCCCAAA
GCCGGTGAGATTCATTTTTCC-----TCGTCTTCTTTCTTAATCTATTAAATTGTGGA----------AGCTTAGCTAGC
TAATTTGTATTTTTGTCATGGTTTGGACACATGCAAAATGTGAGTACATCATTCTACTTCTAATTAGCTCTAACACACAC
ACACACACATGTATATTT------ATGTGCAGAACACCCTGACAAAGGTTGGGCCGTGGGGTGG----------------
-----------------GAATGGAGGGACACCATTTGAAATCCCACAGGCAGAGCTACCTCAGCGTCTAGAAAGTGTCAC
AATTCAGAGTGCCGAAGTTATTGATTCCATTGCCTTCACCTACATCGGCCTAGACGGCGCAAGGCGGACAGTCGGTCCAT
TTGGTGGCGGCGGCGGGACTAAGCAGCCGGTGAGTGAAATTTTGGATTTG-----------------------TTGAATA
ATGGGCTCAGGTCATGGATCACATATAGAATAATGTTGACAATCTGACACCACATATTTACTCCCTTGTGGTGCTTAATA
ACACTAGGAGCGAAGGCAAATAATATATGGTGTTATAATCACTTGCACATTCCTTCCCTTACAGATCCTGCAGCTTGGTC
CTTCGGAGAGCCTGAAGGAAATATTTGGCACAACCGGTAACTTTCTAGGATTGAATATTGTCACATCACTTTCCATTGTC
ACCAATGTTAAGACATATGGACCATTCGGAAAACAATCCGCGGGTAATACCCCTTTCCGTACCACTGCGCCAGACCGTCA
CAGCATTGTGGGCTTCTTCGGGCGGGCTGGCCAATTTGTTGACCAGCTTGGAGCTTATGTGCGCCCAACCCCAAATTAG-
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>chr4D_1_TraesCS4D01G022300
TAAAATCAGTGGTGCCTTAATCGTCGACAGCTGCAACTAGTACGTTTCTACAAAAAACTGCAGCTATGTAAAAGAACTAA
TGGAACGGAAGCGCATACAAAATATTCACATGCACTGTCAAGAAGCAATAAGACCAGGAAATGTCTACTTGCTTCCCACG
ATCGCTAAGCCTCGAACAAGCCCATATTTTGTACAGTCCTTTATGCATAAGTTAACAACACTTGAAAGTATAACATTGAG
AGGAACGTCTAATTGGTGCTGCACTTAATGGTAAATTGTGATCTGAACTATTGAGGTTAGTTAGACAGTGCATACTCAAT
TAAATTTTAGAAGCAATGTTATTTTCATATATCTCTTTCCTATAATTCGTCACACATAGTTTATGCAGAAATTCCGAATT
TTTATTTGTCATTTCCTACATCAAAATA--CTTGATACGCATGTGATCACGATGCATGGCTAGTATCTGTCACAACTGCG
ACTGCAGAATTGTATACAATCGCAGGGAGTTTTGCACTCCCAAAATGGTATGGAGATCCACAATATGTGGGGACACTTAA
ACCACTGTCAGTTTTTAACTTAGCGAATGTCACCATAGTGTGGATGTACATCTAGATCTGAAGCAATGGCGTGGCTACAT
AGATATGTTTATCAAGCTCGTGATCCTGATCCGAAGCAACAAGATCACATAAATTAAGTTTGGCAGCATGCACTTGCCTG
ATGGGTTCACTTCCAGAATTCAAAATTCCATAGTACTACCTCCGTCCGGAATTAACCGTTGTTGAAATGAGCGTAACTAA
GCGTGTTTTAGTGTGTAAATACACTCATTTCAGCGACAGTTAATTCCGGACGCGGACGGAGGGAGTGTAGGCGCTCAAAC
AACCCGGTGGTGCCTAACATGCCTATAAATTGCCTCCCTTCACTCCATCTCATTCCACACCCAACCCACACAAGAACCCT
AGACACCAAACCAGCTTTCCTTACTCTCGAATCTCGATCAGCATGGCCAAGGCAAACCCTTCATATTACCAAACCACCGC
TGCGGTTAGCGCACCGGTCCAGTACCAGGAGCATCTCTTCCACCTGTTTGTGCAGCAGCAGCTCGAAGCAACAAATGGTG
CTAACCAGCTCATTACAGTGAACCCAAAGCTTCCCCAAGGGTTCGGTGTCACCGTTGCTACTGACTGGGACATCCGTGAT
GGTCCTGAAATCACGGCAAAAGTTGTTGCGCGTGCACAAGGCCTGCATCAAGGGTCCGGCAAGAGCAGCGGAGCCTGGTT
TATGTCGTTCAACACAGTGTTCACCGATGAGAGGTTCGCCATGCATGCATTTTTCAGAAAATGTTCCCTTTGAACTTATG
TTGCCATACTTATTTCTTTTTTGCGTGTGTGATGCTTACAAACTTGTGTTTTAGGTTTAAGGGGTCCTCCCTCAGTGTGC
AAGGACATTTGGTTTCCGACGAAGGCGAATGGGTAGTTACGGGTGGAACTGGCGAGTTCGCTTTTGCACAAGGTGTTGTC
ACCTACAAGAAAATCAAGGAATTGGCAGGTGGAAACATCAGAGAGCTTCGTTTCCGTGTTGTGTGCTTCAACTTCCCAAA
GCCGGTGAGATTCATTTTTCC-----TCGTCTTCTTTCTTAATCTATTAAATTGTGGA----------AGCTTAGCTAGC
TAATTTGTATTTTTGTCATGGTTTGGACACATGCAAAATGTGAGTACATCATTCTACTTCTAATTAGCTCTAACACACAC
ACACACACATGTATATTT------ATGTGCAGAACACCCTGACAAAGGTTGGGCCGTGGGGTGG----------------
-----------------GAATGGAGGGACACCATTTGAAATCCCACAGGCAGAGCTACCTCAGCGTCTAGAAAGTGTCAC
AATTCAGAGTGCCGAAGTTATTGATTCCATTGCCTTCACCTACATCGGCCTAGACGGCGCAAGGCGGACAGTCGGTCCAT
TTGGTGGCGGCGGCGGGACTAAGCAGCCGGTGAGTGAAATTTTGGATTTG-----------------------TTGAATA
ATGGGCTCAGGTCATGGATCACATATAGAATAATGTTGACAATCTGACACCACATATTTACTCCCTTGTGGTGCTTAATA
ACACTAGGAGCGAAGGCAAATAATATATGGTGTTATAATCACTTGCACATTCCTTCCCTTACAGATCCTGCAGCTTGGTC
CTTCGGAGAGCCTGAAGGAAATATTTGGCACAACCGGTAACTTTCTAGGATTGAATATTGTCACATCACTTTCCATTGTC
ACCAATGTTAAGACATATGGACCATTCGGAAAACAATCCGCGGGTAATACCCCTTTCCGTACCACTGCGCCAGACCGTCA
CAGCATTGTGGGCTTCTTCGGGCGGGCTGGCCAATTTGTTGACCAGCTTGGAGCTTATGTGCGCCCAACCCCAAATTAGT
AGAAGCAAGTGTTTCTTAAGAAGACCTAGTGCTTTACCCGTCATCTTTCCGCTTCTCAGTGTTCCAGCAATAAGAAGGGC
GGCATATATATGCTGTCCTAGTCTCATGTACTACTTGCTTTCATTTTTATCTTCTATGCCTTTTGGC-----TATCGGCT
CGGTGTGGCCTTAGAAATAAAGTTCTTATTAATAAGAGTGTTGAATGTAATCTTATCCCTGCGTCATGTTCAATATATGT
GCTAATGAATATAGCTTATTGATAAGAGTGTTGAATGTAATCTTATCCCTGTGTCATGTTCAATATATGCACTAATGAAT
ATAGTGAAGTACTGCTACGGGCTGCACATACCTGATATTTGGGAGAGCCCATCAGACATAATAAAATGAAAGTATATTCT
CATCAAGCATGCATCGTTAAAAAATAATATGGGCATTGCAACATCATGCTTATTCATAAAAGATAGAGGATCAAACTCTC
AAAATTCTCAAACACGAACTAACCACTTGGTCATGAGCCTGCTTCAAAACTGTAGTTGCCTAATAATATAATTAAGGAAT
TTTAAAACTACCGAAATAAACTATCCTAGCCTAGCCTCCATGAGCAATGGACAGGTTTTTATGAGTTGAGCCTCCACATC
TCAAATAAAATGTCAAACTCCCAATGGCTATCTAGGTTACTCCACACAGTTAGAGAATGTAGTTCTTGATCCAATGTGCA
CGACAACATGAAGTGGTTACATGTACTTTGTGACTGTATTGATGACTTGAGTACATATGGATTCTGT-------------
-----CTAAGAGACCTTTGAAAAGT---------------------------------TCGGTAAGAAGATCAAACTTCT
ATGATTAGATTGTGAAGGCGAGTACCTGAGCTACGAGTTTGATGATCACCTGCAAAGTCGTGGAATAGTTCCACAACTCA
CTCCTCTAGGTCTAGCACAGAGAAACAATGCACCAGAATGGATGAATCGCACCTTGTTGGACATGGTTCGGTCGATGACG
AGTCAATCTGATACT
>chr4B_220
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-----------------------------------------------------------ACTTGAAAGTGTAATATTGAG
AGGAACGTCTAATTGGTGCTGCACTTAATGGTAAACTGTGATTTTTACTATAGAGC----TTAGACAGTACATACTCAAT
TAGATTTTAGAAGCAATGTTTTTTCCATATATCTCTTTCCTATAATTCGTCACACATAGTTTATTCAAAAATTTCGAATT
TTTATTTGTCATTTTCTACATCAAAATATACTTGATATGCATGTGATCACGATGCATGGCTAGTATCTGTCACTACTGCG
ACTGCAGAATTGTATACAATCGCAGGGTGTTTTGTACACCCAAAATGGTATGGAGATCCACAATATGTGGGGACGCTTAA
ACCAATGTCAGTTCTTAATTTAGCGAATGTCACCATAATGTGGATGTACATCTAGATCTGAAGCAATGACGTGGCTACTT
GGATATGTTTATCAAGCTCGTGATCCTGATCCGAAGCAACAAGATCACATAAATTAAGTTTGGCAGCATGCAGTTGCCTG
ATGGGTTCACTTTCAGAACTCAAAATTACAAAGTACAAGCTCCCTCCGGAATTAACCGTCGCTGAAATGAGTGTATCTAC
GGTTAATTC-------------------------------------------CGGACAGAGGGGGCATAGACGCTCATAT
GACCTGGTGGTGTCTAACATGCCTATAAATTACCTCCCTTCACTCCATCTCATTCCACAGCCAACCCACACAAGAACCCT
AGACAGCAAGCTAGCTTTCCTCACTCTCGAATCTTGATCAACATGGCCAAGGCAAACCCCTCATATTACCAAACCACCGC
TCCGGTTAGCGCACCGGTCCAGTACCAGGAACATCTCTTCCACCTGTTCGTGCATCAGCAGCTCGAAGCAACAAATGGTG
CTAACCAGCTCATTACAGTGAACCCAAAGCTTCCCCAGGGGTTCGGTGTCACCGTTGCTACTGACTGGGACATCCGCGAT
GGTCCCGACACCACGGCAAAGGTTGTTGCGCGTGCACAAGGCCTGCATCAAGGGTCCGGCAAGAGCAGCGGAGCCTGGTT
TATGTCGTTCAACACAGTGTTCACCGATGAGAGGTTCGTCATGCATGCATTTTTCAGAAAATGTTCCCTTTGAACTTATG
TTGCCATACTTAT---TTTTTTGCGTGTGTGATGCTTACAAACTTGTGTTTTAGGTTTAAGGGGTCCTCCCTCAGTGTGC
AAGGGCATTTGGTTTCTGACGAAGGTGAATGGGTAGTCACGGGTGGGACTGGCGAGTTCGCTTTTGCACAAGGTGTGGTC
ACCTACAAGAAAATCAAGGAATTGGCAGGCGGAAACATCAGAGAGCTTCGTTTCCGTGTTGTGTGCTTCAACTTCCCAAA
GCCGGTGAGATTCATTTTTCCCTCGATCGTGTTCTTCCTTAATCTATTATATATGTTAATTGTACTCCAGCTTAGCTAGC
AAATTTGAATTTTTGTCATGGTTCGGACACATGCAAAATGTGAGTACATCATTCTACTTCTAATTAGCTCTAACACACAC
ATATATTTATGTATATATACGTGCATGTGCAGAACACCCTTACAAAGGTTGGGCCGTGGGGTGGGAATGGAGGGACACCA
TTTGGGCCGTGGGGCGGGAATGGAGGGATACCATTTGAAATCACAGAGGCAGAGCAACCTCAGCGTCTAGAAAGTGTCAC
AATTCAGAGTAACGAAGTTATTGATGCCATTGCCTTCACCTACATCGGTCAAGGCGGTGCAAGGCGGACTGTCGGTCCAT
TTGGTGGTGGCGGCGGGGTCAAGCAGCCGGTGAGTGAATTTTGGATTTCGTTTCAATGCAACTCAGTCATCATTTGGATA
GTGAGCTCAATTCATGGATCACATATATAAC---GTTCACAATCTCACACCACATATGTACTCCCTTGTGGTGCTCACTA
ATACTACGAGCGAACGCAAATAGTATATAGTGTTATAATCACTTGC-CATTCCTTTCCTTACAGATCGTGCAGCTTGGTC
CTTCAGAGACCGTGAAGGAAATATTTGGCACAACCGGCAACTTTCAAGGATCGAATGTTGTCACATCACTTTCCATTGTC
ACCAATGTTAAGACATATGGACCATTCGGAAAACAATCCAACGGTACTACTCCTTTCCGTACCACTGCGCCAGACAAGCA
CAGCATTGTGGGCTTCTACGGGCGGTCTGGGCAATTTGTTGATCAGCTTGGAGCTTATGTGCGCCCAACCCCAAATTAGT
AGAAGCAAGTGTTTCTTAAGAAAACTTGCTGCTTTACTCGTCAGCTTCT--------AGTGTTCCAGCAATAAGAAGGGC
GGCATATGT----TGTCCTAATCTCATG---TACTTGCTTTAATTTTTATCTTCTACGCCTTTGGCTATCGGTATCGGCT
CAGTGTGGCCTGTGAAATAAAGTTCTTATTAA------------------------------------------------
----------------------TAAGAGTGTTGAATGTAATCTTATCCCTGTGTCATGTTCAATATATGTGCTAATGAAT
ATAGTGAAGTTCTGCTACGGGCTGCACGTACCTGATATTTGCGAGAGCCCGTCAGACATAATGAAATGGAAATATATTCT
GATCAAGCATGCATCG-------ATCATATGGGCATTGTAACATCATGGTAGTTCATAGAAGATAGAGAATCAAACTCTC
AAAATTCTTAGGCACGAACTAACCACTTGGTCATAAGCCGACTTCGACACCGTAATTTCCTAATAATCTAATTAAGGGAT
TTTAAA-CTAATGAAACAAACTATCTTAGCCTAGCCTTCATGGGCAATGGACGGGTTTTTATGACTTGAGCCTCCACATC
TCAAATAAAATGTCAAACTCCCAATGACTATCTAGGTTACTCCACACAGTTAGAGAATGTAGTTCTTGATCC-ATGTGCA
CGACAACATGAAGTGATTACATGTACTTTGTGATTGTACTAATGACTTGAGTACATATGGATG-TGTCTAATTGATGAGG
CAGAGGTCAGAAACCTTTGAAAAGTTTAAAGAGTTTCAGAACGAGGTTGAGAATCAACTCGGTAAGAAGATCAAACTTCT
ATGATTAGATTGTGAAGGCGAGTACCTAAGCTACAAGTTTGATGAT-----------------AATAGTTCCACAACTCA
CTCCTATAGGTCTAGCACAGAGAAACGATGCATCGGAATGGATGAACCGTACCTTGTT----------------------
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>chr4A_2830
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---------------------------------CATTGCAACATCATGGTTATTCATAAAAGATAGAGAATCAAACTCTC
AAATTTCTCAGACACGAACTAACCACTTGGTCATAAGCCGGCTTCAACACCGTAATTTCCTAATAATCCAATTAAGGAAT
TTTAAAACTAATGAAATAAACTATCTTAATCTAGCCTCCATGAGCAATGGACAGGTTTTTATGAGTTGAGCCTCCACATG
TCAAATAAAATGTCAAACTCCCAATGGCTATCTAGGTTACTCCACACAGTTAGAGAATGTAGTTCTTGATCCGATGTGCA
CGACAACAAGAAGTGGTTACATGTACTTTGTGACTCTATCGATGACTTGAGTACATATGGATTCTGTCTAATTGATGAGG
CAGAACTAAGAGACCTTTGAAAAGT---------------------------------TTGGTAAGAAGATCAAACTTCT
ATGATTAGATTGTGAAGGCGAGTACCTGAGCTACGAGTTTGATGATCATCTGAAAAGTCG-GGAATAGTTCCACAACTCA
CTCCTCTAGGTCTAGCACAGAGAAACAATGCATCGGAATGGATGAAACGCACCTTGTTGGACATGGTTCGGTCGATGACG
AGTCAGTCTGATACT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---S------
-----------------------------------S------S-SS-----S---SSSSS---------S----------
--S-----------------S---S---------------------------------------S--S-----S------
--------------S----------------------S-----------------------------------S------
---------------------------S------S--S------------------------------------S-----
----S--------S----S------------------S------------------------------S---------S-
S-----------------------------------------------------------------------S-------
------------S-----S--------S--S-----S-S----S---------------S-S---------S---S---S
-SS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S-SS---S------S-S
S---S-------S------------------S---------------------------S--------------------
-----S---S-S---------S------------S-----S------------------S--------------------
-S----------------------------S-----------------S-----S-------------------------
-------------------------------------S--------------------------------------S---
-----S--S-S---------S-----------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------SSS----------------------------------------------------------------
----S-----------S--------S-----------S--------S-----------------------------S---
-----------------------------S--------------------------------------------------
------------------------------S-----S------------S--SSSSS-----------------------
S------S---------------S--------------------------------------------------------
-S-S-SSS--------S-----------------------S---------------------------------------
----------------------------S-------------S--S---------S------------------------
----------SS-------------S----------------------S-S--S---S-----------S----------
-------S---------SSS------------------S---S-SS--S---------------------------S---
S--S-----SS----------------S--SSSS---S-------S-----------S-----------------S-S--
-S----S-------S-------S-----S-----------------S--------S-----------S------------
----S----S-S-------------------------S-------S-----S----S-----------------------
---------------------------------------SSS----S---S------------------------SSS--
-----------------S-------S----S-----------S-------------------------------------
----------------------S--S-SS--------S-----S---SSSSSSSSSS-----------------------
-------S-SSSS-------S-------SSS----------S--------------S------S-SS-------------
-S---------SS-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------SS---------
----------S----------------S-------------S--------S-----------S-----S--S--------
S---------------SSSSSSS--S----------------------S-------------------S-----------
----------S-----------------------S----S-------S--S---S--S---------S------------
----------SS-------------S------------------------------------------------------
------------------------------------------------------------------------S-------
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------------------------------------------------S---S-------S-------------------
--------------------------------S-S-----------S---------------------------------
-----S---------
>forward_184
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----CTAAGCCTCGAACAAGCCCA--------------------------------------------------------
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>reverse_2019
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------------------CTAAGCAGCCGGTGAGTGAA------------------------------------------
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>forward_1896
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------------------------------------GAAATCCCACAGGCAGAGCT------------------------
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>reverse_3066
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-------------------------CTAGCCTAGCCTCCATGAGC-----------------------------------
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