Multiple sequence alignment - TraesCS4D01G017500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G017500 chr4D 100.000 4939 0 0 1 4939 7773478 7768540 0.000000e+00 9121.0
1 TraesCS4D01G017500 chr4A 89.594 2095 117 44 676 2703 595817462 595819522 0.000000e+00 2567.0
2 TraesCS4D01G017500 chr4A 84.053 1436 121 45 3259 4674 595820356 595821703 0.000000e+00 1284.0
3 TraesCS4D01G017500 chr4A 92.708 480 34 1 2710 3189 595819703 595820181 0.000000e+00 691.0
4 TraesCS4D01G017500 chr4A 82.412 597 36 25 59 595 595816855 595817442 1.620000e-124 457.0
5 TraesCS4D01G017500 chr4B 92.276 984 76 0 1720 2703 13945304 13946287 0.000000e+00 1397.0
6 TraesCS4D01G017500 chr4B 91.779 815 29 19 918 1709 13944463 13945262 0.000000e+00 1099.0
7 TraesCS4D01G017500 chr4B 82.371 1316 124 49 3367 4663 13947039 13948265 0.000000e+00 1046.0
8 TraesCS4D01G017500 chr4B 89.865 444 40 5 2742 3182 13946552 13946993 2.580000e-157 566.0
9 TraesCS4D01G017500 chr4B 79.389 655 37 38 2 597 13943571 13944186 6.040000e-99 372.0
10 TraesCS4D01G017500 chr4B 89.394 198 17 4 641 836 13944202 13944397 3.820000e-61 246.0
11 TraesCS4D01G017500 chr4B 87.255 102 10 2 4645 4745 54567090 54567189 4.040000e-21 113.0
12 TraesCS4D01G017500 chr4B 88.235 85 5 1 4847 4931 13948538 13948617 4.070000e-16 97.1
13 TraesCS4D01G017500 chr1A 93.991 233 14 0 2262 2494 12762385 12762153 2.190000e-93 353.0
14 TraesCS4D01G017500 chr1A 88.542 96 10 1 4661 4755 241914974 241914879 1.120000e-21 115.0
15 TraesCS4D01G017500 chr1D 92.391 92 6 1 4655 4745 471923461 471923552 4.010000e-26 130.0
16 TraesCS4D01G017500 chr1D 90.323 93 5 2 4660 4748 374041393 374041301 8.690000e-23 119.0
17 TraesCS4D01G017500 chr5D 93.103 87 5 1 4662 4747 42242388 42242302 5.190000e-25 126.0
18 TraesCS4D01G017500 chr7A 87.879 99 11 1 4658 4755 81178087 81178185 1.120000e-21 115.0
19 TraesCS4D01G017500 chr5A 87.879 99 11 1 4658 4755 404371891 404371989 1.120000e-21 115.0
20 TraesCS4D01G017500 chr3A 87.879 99 11 1 4658 4755 441498458 441498556 1.120000e-21 115.0
21 TraesCS4D01G017500 chr7B 87.000 100 11 2 4648 4746 104073274 104073372 1.450000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G017500 chr4D 7768540 7773478 4938 True 9121.000000 9121 100.000000 1 4939 1 chr4D.!!$R1 4938
1 TraesCS4D01G017500 chr4A 595816855 595821703 4848 False 1249.750000 2567 87.191750 59 4674 4 chr4A.!!$F1 4615
2 TraesCS4D01G017500 chr4B 13943571 13948617 5046 False 689.014286 1397 87.615571 2 4931 7 chr4B.!!$F2 4929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1025 0.037447 TCGGATTTGACACCATGCCA 59.963 50.0 0.0 0.0 0.0 4.92 F
1970 2157 0.252284 ACGAGTTCATCCTGGACCCT 60.252 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2286 0.099436 GCACTTTGGGCTCGCAATAG 59.901 55.0 0.21 4.45 0.00 1.73 R
3941 4511 0.174617 TTGGCGACATCGAGCATACA 59.825 50.0 5.26 0.00 42.32 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 48 5.057149 GTGCAAAGAAGAGGTTCTAGAACA 58.943 41.667 31.30 8.61 42.59 3.18
45 55 5.186797 AGAAGAGGTTCTAGAACATGTCCAG 59.813 44.000 31.30 0.00 41.54 3.86
46 56 3.196685 AGAGGTTCTAGAACATGTCCAGC 59.803 47.826 31.30 15.09 42.85 4.85
49 59 3.265791 GTTCTAGAACATGTCCAGCCAG 58.734 50.000 27.12 0.00 40.84 4.85
51 61 1.209019 CTAGAACATGTCCAGCCAGCT 59.791 52.381 0.00 0.00 0.00 4.24
116 132 2.340809 CTTCCGCCGGTACACACA 59.659 61.111 1.63 0.00 0.00 3.72
118 134 2.702751 CTTCCGCCGGTACACACACA 62.703 60.000 1.63 0.00 0.00 3.72
120 136 2.279584 CGCCGGTACACACACACA 60.280 61.111 1.90 0.00 0.00 3.72
121 137 2.591311 CGCCGGTACACACACACAC 61.591 63.158 1.90 0.00 0.00 3.82
122 138 1.521906 GCCGGTACACACACACACA 60.522 57.895 1.90 0.00 0.00 3.72
123 139 1.768112 GCCGGTACACACACACACAC 61.768 60.000 1.90 0.00 0.00 3.82
124 140 0.460459 CCGGTACACACACACACACA 60.460 55.000 0.00 0.00 0.00 3.72
125 141 0.648441 CGGTACACACACACACACAC 59.352 55.000 0.00 0.00 0.00 3.82
126 142 1.728068 GGTACACACACACACACACA 58.272 50.000 0.00 0.00 0.00 3.72
127 143 1.663643 GGTACACACACACACACACAG 59.336 52.381 0.00 0.00 0.00 3.66
137 153 1.643292 CACACACAGTGCCGACTTG 59.357 57.895 0.00 0.00 42.15 3.16
169 185 0.463833 ATCCCCGCGGTGATTTTCTC 60.464 55.000 26.12 0.00 0.00 2.87
278 323 2.209809 TGACCCCATCACACCCCT 59.790 61.111 0.00 0.00 29.99 4.79
279 324 1.923395 TGACCCCATCACACCCCTC 60.923 63.158 0.00 0.00 29.99 4.30
280 325 1.923395 GACCCCATCACACCCCTCA 60.923 63.158 0.00 0.00 0.00 3.86
353 411 0.952497 CGCAGAAGCAGCCAAGAGAA 60.952 55.000 0.00 0.00 42.27 2.87
354 412 0.803740 GCAGAAGCAGCCAAGAGAAG 59.196 55.000 0.00 0.00 41.58 2.85
355 413 1.881498 GCAGAAGCAGCCAAGAGAAGT 60.881 52.381 0.00 0.00 41.58 3.01
358 425 2.075338 GAAGCAGCCAAGAGAAGTGAG 58.925 52.381 0.00 0.00 0.00 3.51
365 432 1.553417 CCAAGAGAAGTGAGGAGGGGA 60.553 57.143 0.00 0.00 0.00 4.81
376 443 6.910259 AGTGAGGAGGGGACTAAAAATAAT 57.090 37.500 0.00 0.00 44.43 1.28
490 565 1.541147 GCCACACTTGCTTGCAGATTA 59.459 47.619 0.00 0.00 0.00 1.75
491 566 2.415090 GCCACACTTGCTTGCAGATTAG 60.415 50.000 0.00 0.00 0.00 1.73
493 581 1.815003 ACACTTGCTTGCAGATTAGCC 59.185 47.619 5.68 0.00 36.56 3.93
496 584 0.677731 TTGCTTGCAGATTAGCCGCT 60.678 50.000 5.68 0.00 36.56 5.52
514 602 3.771160 GCGGCTTCCCCTTCTCGA 61.771 66.667 0.00 0.00 0.00 4.04
516 604 2.585153 GGCTTCCCCTTCTCGACC 59.415 66.667 0.00 0.00 0.00 4.79
521 609 0.974383 TTCCCCTTCTCGACCAACTC 59.026 55.000 0.00 0.00 0.00 3.01
523 611 1.192146 CCCCTTCTCGACCAACTCCA 61.192 60.000 0.00 0.00 0.00 3.86
527 615 3.412386 CCTTCTCGACCAACTCCAAAAT 58.588 45.455 0.00 0.00 0.00 1.82
530 618 1.732259 CTCGACCAACTCCAAAATCCG 59.268 52.381 0.00 0.00 0.00 4.18
531 619 0.168128 CGACCAACTCCAAAATCCGC 59.832 55.000 0.00 0.00 0.00 5.54
572 662 0.595095 GTTCCAGCTTCTTGTGCCTG 59.405 55.000 0.00 0.00 0.00 4.85
601 691 1.197721 AGAAGAAATCCGCGCTGTTTG 59.802 47.619 5.56 0.00 0.00 2.93
602 692 0.240945 AAGAAATCCGCGCTGTTTGG 59.759 50.000 5.56 0.00 0.00 3.28
603 693 1.154035 GAAATCCGCGCTGTTTGGG 60.154 57.895 5.56 0.00 0.00 4.12
611 701 2.597510 GCTGTTTGGGGCCTCGTT 60.598 61.111 0.84 0.00 0.00 3.85
612 702 2.200337 GCTGTTTGGGGCCTCGTTT 61.200 57.895 0.84 0.00 0.00 3.60
613 703 1.659794 CTGTTTGGGGCCTCGTTTG 59.340 57.895 0.84 0.00 0.00 2.93
614 704 0.821711 CTGTTTGGGGCCTCGTTTGA 60.822 55.000 0.84 0.00 0.00 2.69
616 706 1.901464 TTTGGGGCCTCGTTTGAGC 60.901 57.895 0.84 0.00 41.13 4.26
617 707 2.632602 TTTGGGGCCTCGTTTGAGCA 62.633 55.000 0.84 0.00 41.13 4.26
619 709 2.747855 GGGCCTCGTTTGAGCAGG 60.748 66.667 0.84 0.00 41.13 4.85
620 710 2.347490 GGCCTCGTTTGAGCAGGA 59.653 61.111 0.00 0.00 41.13 3.86
621 711 1.743252 GGCCTCGTTTGAGCAGGAG 60.743 63.158 0.00 0.00 41.13 3.69
622 712 1.004440 GCCTCGTTTGAGCAGGAGT 60.004 57.895 0.00 0.00 41.13 3.85
623 713 0.246635 GCCTCGTTTGAGCAGGAGTA 59.753 55.000 0.00 0.00 41.13 2.59
624 714 1.134670 GCCTCGTTTGAGCAGGAGTAT 60.135 52.381 0.00 0.00 41.13 2.12
625 715 2.815478 CCTCGTTTGAGCAGGAGTATC 58.185 52.381 0.00 0.00 41.13 2.24
626 716 2.815478 CTCGTTTGAGCAGGAGTATCC 58.185 52.381 0.00 0.00 46.27 2.59
649 739 2.287608 CGCTTTTTCCTGTTGGGAGTTC 60.288 50.000 0.00 0.00 46.01 3.01
651 741 3.566351 CTTTTTCCTGTTGGGAGTTCCT 58.434 45.455 0.00 0.00 46.01 3.36
665 755 1.970114 TTCCTGCTTGCTGCTCTGC 60.970 57.895 0.00 3.23 43.37 4.26
666 756 3.441290 CCTGCTTGCTGCTCTGCC 61.441 66.667 0.00 0.00 43.37 4.85
670 760 2.273912 GCTTGCTGCTCTGCCCTTT 61.274 57.895 0.00 0.00 38.95 3.11
671 761 1.881602 CTTGCTGCTCTGCCCTTTC 59.118 57.895 0.00 0.00 0.00 2.62
674 764 2.394563 GCTGCTCTGCCCTTTCGTC 61.395 63.158 0.00 0.00 0.00 4.20
677 767 2.125512 CTCTGCCCTTTCGTCGGG 60.126 66.667 0.00 0.00 44.89 5.14
686 776 1.541670 CCTTTCGTCGGGTTTCTTGGA 60.542 52.381 0.00 0.00 0.00 3.53
784 877 2.313041 AGGATTTGCCCCTTTTAGAGCT 59.687 45.455 0.00 0.00 37.37 4.09
805 898 0.469917 GGATTCCTCCGCAAGATCCA 59.530 55.000 0.00 0.00 43.02 3.41
845 953 1.416049 CTCGTGCGGTTCAATCGTG 59.584 57.895 0.00 0.00 0.00 4.35
881 989 1.838073 GCTTCTTCCGTCCTTGGGGA 61.838 60.000 0.00 0.00 39.70 4.81
910 1021 1.271325 TGTGCTCGGATTTGACACCAT 60.271 47.619 0.00 0.00 0.00 3.55
911 1022 1.131126 GTGCTCGGATTTGACACCATG 59.869 52.381 0.00 0.00 0.00 3.66
912 1023 0.099436 GCTCGGATTTGACACCATGC 59.901 55.000 0.00 0.00 0.00 4.06
913 1024 0.734889 CTCGGATTTGACACCATGCC 59.265 55.000 0.00 0.00 0.00 4.40
914 1025 0.037447 TCGGATTTGACACCATGCCA 59.963 50.000 0.00 0.00 0.00 4.92
915 1026 0.887247 CGGATTTGACACCATGCCAA 59.113 50.000 0.00 0.00 0.00 4.52
916 1027 1.135315 CGGATTTGACACCATGCCAAG 60.135 52.381 0.00 0.00 0.00 3.61
956 1073 2.165437 AGCGAGCTTCTAGAACCTTCTG 59.835 50.000 0.00 0.00 38.19 3.02
957 1074 2.535331 CGAGCTTCTAGAACCTTCTGC 58.465 52.381 0.00 2.48 38.19 4.26
963 1083 4.382577 GCTTCTAGAACCTTCTGCTAGCTT 60.383 45.833 17.23 0.00 38.19 3.74
966 1086 2.545810 AGAACCTTCTGCTAGCTTCCT 58.454 47.619 17.23 0.00 35.89 3.36
1259 1399 3.024547 TCCTCGACCACTTCTCCAATAG 58.975 50.000 0.00 0.00 0.00 1.73
1267 1407 0.465705 CTTCTCCAATAGGCTCGCCA 59.534 55.000 11.02 0.00 38.92 5.69
1485 1634 2.100631 GGCGATGGACTTCGTGGTG 61.101 63.158 8.96 0.00 41.16 4.17
1546 1695 0.809385 CGTCTCGCTCTTCCAGGTAA 59.191 55.000 0.00 0.00 0.00 2.85
1547 1696 1.405821 CGTCTCGCTCTTCCAGGTAAT 59.594 52.381 0.00 0.00 0.00 1.89
1549 1698 3.066342 CGTCTCGCTCTTCCAGGTAATAA 59.934 47.826 0.00 0.00 0.00 1.40
1554 1703 7.542824 GTCTCGCTCTTCCAGGTAATAATAATC 59.457 40.741 0.00 0.00 0.00 1.75
1579 1728 5.105554 AGCAACAGATACTACCTCTGACAAG 60.106 44.000 7.28 0.00 42.22 3.16
1583 1737 4.642437 CAGATACTACCTCTGACAAGCTGA 59.358 45.833 0.00 0.00 42.22 4.26
1739 1926 2.483583 TTTTGATTTTGCAGCGTCGT 57.516 40.000 0.00 0.00 0.00 4.34
1838 2025 3.998156 CTGCTCAGCCAGTGCATT 58.002 55.556 0.00 0.00 44.81 3.56
1841 2028 0.537828 TGCTCAGCCAGTGCATTCAA 60.538 50.000 0.00 0.00 41.43 2.69
1842 2029 0.599558 GCTCAGCCAGTGCATTCAAA 59.400 50.000 0.00 0.00 41.13 2.69
1845 2032 1.202915 TCAGCCAGTGCATTCAAAGGA 60.203 47.619 0.00 0.00 41.13 3.36
1847 2034 2.232941 CAGCCAGTGCATTCAAAGGATT 59.767 45.455 0.00 0.00 41.13 3.01
1856 2043 3.794475 GCATTCAAAGGATTGCAGGATCG 60.794 47.826 6.68 0.00 45.31 3.69
1858 2045 3.348647 TCAAAGGATTGCAGGATCGAA 57.651 42.857 0.00 0.00 36.45 3.71
1859 2046 3.889815 TCAAAGGATTGCAGGATCGAAT 58.110 40.909 0.00 0.00 36.45 3.34
1970 2157 0.252284 ACGAGTTCATCCTGGACCCT 60.252 55.000 0.00 0.00 0.00 4.34
2030 2217 1.440518 CTGTGACGACGTCGACCTG 60.441 63.158 41.52 25.95 43.02 4.00
2033 2220 2.175322 GACGACGTCGACCTGGTC 59.825 66.667 41.52 24.33 43.02 4.02
2042 2229 4.459089 GACCTGGTCGGCCTGCTC 62.459 72.222 11.71 0.00 35.61 4.26
2045 2232 4.463879 CTGGTCGGCCTGCTCCTG 62.464 72.222 7.97 0.00 35.27 3.86
2096 2283 1.966451 GGCCATACACTATGCCGCC 60.966 63.158 0.00 0.00 36.70 6.13
2099 2286 2.030562 ATACACTATGCCGCCGCC 59.969 61.111 0.00 0.00 0.00 6.13
2105 2292 2.668212 TATGCCGCCGCCTATTGC 60.668 61.111 0.00 0.00 0.00 3.56
2120 2307 0.322456 ATTGCGAGCCCAAAGTGCTA 60.322 50.000 0.00 0.00 39.69 3.49
2207 2394 1.050204 ACACACCATTGCATTTGGCT 58.950 45.000 14.46 1.99 45.15 4.75
2345 2532 3.950395 AGAAAGACTGCAACAAGAAGCTT 59.050 39.130 0.00 0.00 0.00 3.74
2456 2643 0.601841 TTTCGGCAGAGGTTTCGGTC 60.602 55.000 0.00 0.00 0.00 4.79
2474 2661 2.489275 CGCCACACCTTTGCTGGTT 61.489 57.895 0.00 0.00 38.45 3.67
2591 2778 4.770795 AGACCATAGTGAGGTGTATTTGC 58.229 43.478 0.00 0.00 40.09 3.68
2638 2832 6.274157 TCTCATGGTAGAGAGAGTTTTGAC 57.726 41.667 0.00 0.00 39.62 3.18
2662 2856 1.971357 TCGGTGCTCTTTTCCTTCTCT 59.029 47.619 0.00 0.00 0.00 3.10
2679 2873 6.652481 TCCTTCTCTTGAATTTAGAAGCACAG 59.348 38.462 12.03 3.71 43.13 3.66
2683 2877 6.772716 TCTCTTGAATTTAGAAGCACAGGTTT 59.227 34.615 0.00 0.00 0.00 3.27
2833 3253 5.201243 ACTGCTGTTACCTTTTCTTTTCCT 58.799 37.500 0.00 0.00 0.00 3.36
2853 3273 6.398234 TCCTAGCTAGAAAGAAGCATACAG 57.602 41.667 22.70 0.06 42.62 2.74
2855 3275 5.982516 CCTAGCTAGAAAGAAGCATACAGTG 59.017 44.000 22.70 0.00 42.62 3.66
2875 3295 8.885494 ACAGTGCTTAAAATCATTGCTAAAAA 57.115 26.923 0.00 0.00 0.00 1.94
2926 3347 6.379417 CCTTTGCAAGAATATTCTTCCCTTCT 59.621 38.462 24.72 2.96 45.23 2.85
2947 3368 1.601759 AGCCAAGCTTGTCATGCGT 60.602 52.632 24.35 8.24 33.89 5.24
3097 3518 4.518970 GCCTTGACAAAGACAGGTGATTTA 59.481 41.667 0.00 0.00 35.19 1.40
3128 3549 7.844493 ATCATGCATCTGTTATAAAATGGGT 57.156 32.000 0.00 0.00 0.00 4.51
3139 3561 7.488322 TGTTATAAAATGGGTATTGCTTCAGC 58.512 34.615 0.00 0.00 42.50 4.26
3163 3585 9.061435 AGCATTTCTCCTTGCTAATAGATTTAC 57.939 33.333 0.00 0.00 46.92 2.01
3189 3611 4.072131 TCTTCGAGCAAAAATTGGCTAGT 58.928 39.130 0.00 0.00 41.22 2.57
3192 3614 5.950758 TCGAGCAAAAATTGGCTAGTTTA 57.049 34.783 0.00 0.00 41.22 2.01
3194 3616 6.378582 TCGAGCAAAAATTGGCTAGTTTAAG 58.621 36.000 0.00 0.00 41.22 1.85
3196 3618 6.569610 CGAGCAAAAATTGGCTAGTTTAAGGA 60.570 38.462 0.00 0.00 41.22 3.36
3197 3619 6.691508 AGCAAAAATTGGCTAGTTTAAGGAG 58.308 36.000 0.00 0.00 38.90 3.69
3199 3621 6.691508 CAAAAATTGGCTAGTTTAAGGAGCT 58.308 36.000 0.00 0.00 36.43 4.09
3202 3624 2.546899 TGGCTAGTTTAAGGAGCTCCA 58.453 47.619 33.90 12.52 38.89 3.86
3206 3628 5.190925 TGGCTAGTTTAAGGAGCTCCAAATA 59.809 40.000 33.90 20.60 38.89 1.40
3207 3629 6.126478 TGGCTAGTTTAAGGAGCTCCAAATAT 60.126 38.462 33.90 19.36 38.89 1.28
3208 3630 6.773200 GGCTAGTTTAAGGAGCTCCAAATATT 59.227 38.462 33.90 20.80 38.89 1.28
3209 3631 7.285629 GGCTAGTTTAAGGAGCTCCAAATATTT 59.714 37.037 33.90 20.09 38.89 1.40
3216 3638 6.927294 AGGAGCTCCAAATATTTTTACTCG 57.073 37.500 33.90 0.00 38.89 4.18
3219 3641 6.315393 GGAGCTCCAAATATTTTTACTCGTGA 59.685 38.462 28.43 0.00 35.64 4.35
3222 3644 9.391006 AGCTCCAAATATTTTTACTCGTGAATA 57.609 29.630 0.00 0.00 0.00 1.75
3223 3645 9.434559 GCTCCAAATATTTTTACTCGTGAATAC 57.565 33.333 0.00 0.00 0.00 1.89
3240 3662 9.961266 TCGTGAATACAATTTTGAAGTATAACG 57.039 29.630 0.00 0.00 38.45 3.18
3241 3663 9.961266 CGTGAATACAATTTTGAAGTATAACGA 57.039 29.630 0.00 0.00 38.89 3.85
3263 3790 5.220854 CGAAGAATACATTAACAGCCCAAGG 60.221 44.000 0.00 0.00 0.00 3.61
3277 3804 2.805657 GCCCAAGGTATCGTCATGTACC 60.806 54.545 2.68 2.68 40.52 3.34
3279 3806 3.071023 CCCAAGGTATCGTCATGTACCAT 59.929 47.826 11.61 0.00 42.25 3.55
3283 3810 6.202188 CCAAGGTATCGTCATGTACCATTTAC 59.798 42.308 11.61 0.00 42.25 2.01
3284 3811 6.474140 AGGTATCGTCATGTACCATTTACA 57.526 37.500 11.61 0.00 42.25 2.41
3285 3812 6.513180 AGGTATCGTCATGTACCATTTACAG 58.487 40.000 11.61 0.00 42.25 2.74
3331 3858 6.890293 AGGAACTAACTAAAGGGCAGATTAG 58.110 40.000 0.00 0.00 36.02 1.73
3336 3863 6.768381 ACTAACTAAAGGGCAGATTAGATTGC 59.232 38.462 9.31 0.00 39.56 3.56
3356 3885 1.568612 CGTGGGTATGCGATGATGGC 61.569 60.000 0.00 0.00 0.00 4.40
3361 3890 2.221169 GGTATGCGATGATGGCTTTCA 58.779 47.619 0.29 0.00 0.00 2.69
3362 3891 2.816087 GGTATGCGATGATGGCTTTCAT 59.184 45.455 0.29 3.63 39.04 2.57
3400 3929 6.248433 AGATTTGATTTGGCTTAGGTTCTGA 58.752 36.000 0.00 0.00 0.00 3.27
3406 3935 2.972625 TGGCTTAGGTTCTGATCAACG 58.027 47.619 0.00 0.00 0.00 4.10
3413 3942 2.223377 AGGTTCTGATCAACGAAAACGC 59.777 45.455 0.00 0.00 0.00 4.84
3430 3959 1.003223 ACGCGTTTGCTTGAACTAACC 60.003 47.619 5.58 0.00 39.65 2.85
3436 3965 5.255596 CGTTTGCTTGAACTAACCGATATG 58.744 41.667 0.00 0.00 0.00 1.78
3448 3981 6.650120 ACTAACCGATATGTGGTCTTCAATT 58.350 36.000 0.00 0.00 39.29 2.32
3460 3993 7.271511 TGTGGTCTTCAATTTTGCTTTTACAT 58.728 30.769 0.00 0.00 0.00 2.29
3514 4048 9.744468 AACTTACATTACCTGTTTTGCTTTAAG 57.256 29.630 0.00 0.00 39.39 1.85
3520 4054 9.559958 CATTACCTGTTTTGCTTTAAGATACAG 57.440 33.333 0.00 3.18 33.21 2.74
3523 4057 7.649057 ACCTGTTTTGCTTTAAGATACAGAAC 58.351 34.615 13.59 7.30 34.87 3.01
3553 4087 5.125417 TGCAAATAGGAGACTTATGCAAACC 59.875 40.000 0.00 0.00 44.02 3.27
3554 4088 5.450550 GCAAATAGGAGACTTATGCAAACCC 60.451 44.000 0.00 0.00 43.67 4.11
3555 4089 2.808906 AGGAGACTTATGCAAACCCC 57.191 50.000 0.00 0.00 37.44 4.95
3556 4090 2.279173 AGGAGACTTATGCAAACCCCT 58.721 47.619 0.00 0.00 37.44 4.79
3557 4091 2.649816 AGGAGACTTATGCAAACCCCTT 59.350 45.455 0.00 0.00 37.44 3.95
3600 4141 9.166173 CTCTTCTTTATGGATAAATGTGTCACA 57.834 33.333 8.40 8.40 32.36 3.58
3601 4142 9.685276 TCTTCTTTATGGATAAATGTGTCACAT 57.315 29.630 12.87 12.87 41.31 3.21
3603 4144 8.224389 TCTTTATGGATAAATGTGTCACATGG 57.776 34.615 19.08 0.00 37.97 3.66
3604 4145 7.833682 TCTTTATGGATAAATGTGTCACATGGT 59.166 33.333 19.08 12.46 37.97 3.55
3605 4146 9.119418 CTTTATGGATAAATGTGTCACATGGTA 57.881 33.333 19.08 14.11 37.97 3.25
3606 4147 9.467796 TTTATGGATAAATGTGTCACATGGTAA 57.532 29.630 19.08 5.85 37.97 2.85
3610 4151 6.183360 GGATAAATGTGTCACATGGTAACTGG 60.183 42.308 19.08 0.00 37.97 4.00
3615 4185 2.635427 TGTCACATGGTAACTGGTGCTA 59.365 45.455 0.00 0.00 39.92 3.49
3627 4197 6.040616 GGTAACTGGTGCTATGTAGTCTGTAT 59.959 42.308 0.00 0.00 0.00 2.29
3629 4199 6.546428 ACTGGTGCTATGTAGTCTGTATTT 57.454 37.500 0.00 0.00 0.00 1.40
3749 4319 0.036010 CCACCGATCTGCACTTCCTT 60.036 55.000 0.00 0.00 0.00 3.36
3941 4511 1.364171 GAGGCTGTCGCGGTGATAT 59.636 57.895 6.13 0.00 36.88 1.63
3944 4514 0.031585 GGCTGTCGCGGTGATATGTA 59.968 55.000 6.13 0.00 36.88 2.29
3960 4530 0.174617 TGTATGCTCGATGTCGCCAA 59.825 50.000 0.00 0.00 39.60 4.52
3995 4567 4.933064 GGATCCGTCGAGCGCAGG 62.933 72.222 11.47 4.75 39.71 4.85
4115 4689 4.122776 CAAGCAAGCATATCGGTTCTAGT 58.877 43.478 0.00 0.00 31.36 2.57
4119 4693 4.332819 GCAAGCATATCGGTTCTAGTTTGT 59.667 41.667 0.00 0.00 31.36 2.83
4188 4762 6.150140 GTGACAGGCTTCAGTAGATGATTTTT 59.850 38.462 0.00 0.00 37.89 1.94
4189 4763 7.334421 GTGACAGGCTTCAGTAGATGATTTTTA 59.666 37.037 0.00 0.00 37.89 1.52
4200 4774 4.196193 AGATGATTTTTAATCGCCGGTGA 58.804 39.130 22.04 22.04 0.00 4.02
4201 4775 3.750639 TGATTTTTAATCGCCGGTGAC 57.249 42.857 22.26 5.38 0.00 3.67
4215 4790 0.667792 GGTGACCGCTCTTCACAGTC 60.668 60.000 10.32 0.00 44.47 3.51
4219 4794 1.728971 GACCGCTCTTCACAGTCATTG 59.271 52.381 0.00 0.00 0.00 2.82
4252 4827 1.267574 TGCTCAGGCCTCTTGGTAGG 61.268 60.000 0.00 0.00 39.87 3.18
4258 4833 2.239654 CAGGCCTCTTGGTAGGATCAAA 59.760 50.000 0.00 0.00 39.15 2.69
4259 4834 2.239907 AGGCCTCTTGGTAGGATCAAAC 59.760 50.000 0.00 0.00 39.15 2.93
4260 4835 2.239907 GGCCTCTTGGTAGGATCAAACT 59.760 50.000 0.00 0.00 39.15 2.66
4261 4836 3.274288 GCCTCTTGGTAGGATCAAACTG 58.726 50.000 0.00 0.00 39.15 3.16
4262 4837 3.055094 GCCTCTTGGTAGGATCAAACTGA 60.055 47.826 0.00 0.00 39.15 3.41
4264 4839 5.749462 CCTCTTGGTAGGATCAAACTGATT 58.251 41.667 0.00 0.00 37.20 2.57
4265 4840 6.183347 CCTCTTGGTAGGATCAAACTGATTT 58.817 40.000 0.00 0.00 37.20 2.17
4266 4841 6.660949 CCTCTTGGTAGGATCAAACTGATTTT 59.339 38.462 0.00 0.00 37.20 1.82
4267 4842 7.362401 CCTCTTGGTAGGATCAAACTGATTTTG 60.362 40.741 0.00 0.00 41.45 2.44
4289 4864 2.572290 AGGTTCGTTTGAAGGTTCAGG 58.428 47.619 0.00 0.00 38.61 3.86
4325 4919 5.731599 CATGGACTGCTAATCTTGAGAAC 57.268 43.478 0.00 0.00 0.00 3.01
4326 4920 3.849911 TGGACTGCTAATCTTGAGAACG 58.150 45.455 0.00 0.00 0.00 3.95
4342 4936 0.899717 AACGCCAGGGATTTGTGCAT 60.900 50.000 0.00 0.00 0.00 3.96
4359 4953 7.405469 TTGTGCATAAACATGAAACATCAAC 57.595 32.000 0.00 0.00 0.00 3.18
4392 4986 0.816018 ATCGAAAACACGCACACCCA 60.816 50.000 0.00 0.00 0.00 4.51
4393 4987 0.816018 TCGAAAACACGCACACCCAT 60.816 50.000 0.00 0.00 0.00 4.00
4396 4990 1.670949 AAAACACGCACACCCATGCA 61.671 50.000 0.00 0.00 46.47 3.96
4464 5058 8.970859 AAAATGGATTTTTGGTACATCAAACA 57.029 26.923 0.00 0.00 39.30 2.83
4487 5081 3.165058 TGTCGACCATTCTACTCATGC 57.835 47.619 14.12 0.00 0.00 4.06
4492 5086 3.722147 GACCATTCTACTCATGCACGAT 58.278 45.455 0.00 0.00 0.00 3.73
4496 5090 4.333649 CCATTCTACTCATGCACGATGTTT 59.666 41.667 0.00 0.00 33.29 2.83
4497 5091 5.163723 CCATTCTACTCATGCACGATGTTTT 60.164 40.000 0.00 0.00 33.29 2.43
4498 5092 5.940192 TTCTACTCATGCACGATGTTTTT 57.060 34.783 0.00 0.00 33.29 1.94
4501 5095 3.631144 ACTCATGCACGATGTTTTTGTG 58.369 40.909 0.00 0.00 41.96 3.33
4502 5096 3.314913 ACTCATGCACGATGTTTTTGTGA 59.685 39.130 0.00 0.00 41.64 3.58
4503 5097 3.887741 TCATGCACGATGTTTTTGTGAG 58.112 40.909 0.00 0.00 41.64 3.51
4504 5098 2.772568 TGCACGATGTTTTTGTGAGG 57.227 45.000 0.00 0.00 41.64 3.86
4505 5099 2.293170 TGCACGATGTTTTTGTGAGGA 58.707 42.857 0.00 0.00 41.64 3.71
4506 5100 2.685388 TGCACGATGTTTTTGTGAGGAA 59.315 40.909 0.00 0.00 41.64 3.36
4507 5101 3.317711 TGCACGATGTTTTTGTGAGGAAT 59.682 39.130 0.00 0.00 41.64 3.01
4508 5102 3.670055 GCACGATGTTTTTGTGAGGAATG 59.330 43.478 0.00 0.00 41.64 2.67
4509 5103 4.556501 GCACGATGTTTTTGTGAGGAATGA 60.557 41.667 0.00 0.00 41.64 2.57
4510 5104 4.911610 CACGATGTTTTTGTGAGGAATGAC 59.088 41.667 0.00 0.00 41.64 3.06
4511 5105 4.578516 ACGATGTTTTTGTGAGGAATGACA 59.421 37.500 0.00 0.00 0.00 3.58
4512 5106 4.911610 CGATGTTTTTGTGAGGAATGACAC 59.088 41.667 0.00 0.00 37.51 3.67
4513 5107 4.647424 TGTTTTTGTGAGGAATGACACC 57.353 40.909 0.00 0.00 36.35 4.16
4514 5108 3.383185 TGTTTTTGTGAGGAATGACACCC 59.617 43.478 0.00 0.00 36.35 4.61
4515 5109 3.593442 TTTTGTGAGGAATGACACCCT 57.407 42.857 0.00 0.00 36.35 4.34
4516 5110 4.715534 TTTTGTGAGGAATGACACCCTA 57.284 40.909 0.00 0.00 36.35 3.53
4517 5111 3.981071 TTGTGAGGAATGACACCCTAG 57.019 47.619 0.00 0.00 36.35 3.02
4518 5112 2.902608 TGTGAGGAATGACACCCTAGT 58.097 47.619 0.00 0.00 36.35 2.57
4610 5204 8.081633 TCGAATGTAGCTTTGATTTTGTCATTT 58.918 29.630 0.00 0.00 36.54 2.32
4611 5205 8.702438 CGAATGTAGCTTTGATTTTGTCATTTT 58.298 29.630 0.00 0.00 36.54 1.82
4637 5231 2.213499 GCTGGAATATCAAGGGTGTCG 58.787 52.381 0.00 0.00 0.00 4.35
4641 5235 4.258543 TGGAATATCAAGGGTGTCGTTTC 58.741 43.478 0.00 0.00 0.00 2.78
4674 5268 1.926108 ATATGCTACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
4675 5269 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
4676 5270 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
4677 5271 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
4678 5272 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
4679 5273 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4680 5274 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4681 5275 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4682 5276 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4683 5277 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4684 5278 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4685 5279 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4686 5280 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
4687 5281 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
4688 5282 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
4689 5283 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
4690 5284 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
4691 5285 5.111293 TCCGTCCCAAAATATAAGAACGTC 58.889 41.667 0.00 0.00 0.00 4.34
4692 5286 5.105228 TCCGTCCCAAAATATAAGAACGTCT 60.105 40.000 0.00 0.00 0.00 4.18
4693 5287 5.583457 CCGTCCCAAAATATAAGAACGTCTT 59.417 40.000 0.00 0.00 40.35 3.01
4694 5288 6.093082 CCGTCCCAAAATATAAGAACGTCTTT 59.907 38.462 5.74 0.00 37.89 2.52
4695 5289 7.178074 CGTCCCAAAATATAAGAACGTCTTTC 58.822 38.462 5.74 0.00 37.89 2.62
4696 5290 7.148540 CGTCCCAAAATATAAGAACGTCTTTCA 60.149 37.037 5.74 0.00 37.89 2.69
4697 5291 8.674607 GTCCCAAAATATAAGAACGTCTTTCAT 58.325 33.333 5.74 0.00 37.89 2.57
4698 5292 9.893634 TCCCAAAATATAAGAACGTCTTTCATA 57.106 29.630 5.74 1.08 37.89 2.15
4699 5293 9.931210 CCCAAAATATAAGAACGTCTTTCATAC 57.069 33.333 5.74 0.00 37.89 2.39
4732 5326 9.849166 AGTATGAAAAACGTTGTTATATTTGGG 57.151 29.630 3.06 0.00 0.00 4.12
4733 5327 9.843334 GTATGAAAAACGTTGTTATATTTGGGA 57.157 29.630 3.06 0.00 0.00 4.37
4734 5328 8.751302 ATGAAAAACGTTGTTATATTTGGGAC 57.249 30.769 3.06 0.00 0.00 4.46
4735 5329 7.713750 TGAAAAACGTTGTTATATTTGGGACA 58.286 30.769 3.06 0.00 0.00 4.02
4736 5330 7.863375 TGAAAAACGTTGTTATATTTGGGACAG 59.137 33.333 3.06 0.00 42.39 3.51
4737 5331 7.513371 AAAACGTTGTTATATTTGGGACAGA 57.487 32.000 0.00 0.00 42.39 3.41
4738 5332 6.737254 AACGTTGTTATATTTGGGACAGAG 57.263 37.500 0.00 0.00 42.39 3.35
4739 5333 5.183228 ACGTTGTTATATTTGGGACAGAGG 58.817 41.667 0.00 0.00 42.39 3.69
4740 5334 4.574828 CGTTGTTATATTTGGGACAGAGGG 59.425 45.833 0.00 0.00 42.39 4.30
4741 5335 5.628200 CGTTGTTATATTTGGGACAGAGGGA 60.628 44.000 0.00 0.00 42.39 4.20
4742 5336 5.630415 TGTTATATTTGGGACAGAGGGAG 57.370 43.478 0.00 0.00 42.39 4.30
4743 5337 5.036916 TGTTATATTTGGGACAGAGGGAGT 58.963 41.667 0.00 0.00 42.39 3.85
4744 5338 6.206787 TGTTATATTTGGGACAGAGGGAGTA 58.793 40.000 0.00 0.00 42.39 2.59
4745 5339 6.326583 TGTTATATTTGGGACAGAGGGAGTAG 59.673 42.308 0.00 0.00 42.39 2.57
4751 5345 3.789840 TGGGACAGAGGGAGTAGTATACA 59.210 47.826 5.50 0.00 46.26 2.29
4753 5347 4.828387 GGGACAGAGGGAGTAGTATACAAG 59.172 50.000 5.50 0.00 46.26 3.16
4756 5350 6.075949 ACAGAGGGAGTAGTATACAAGTCA 57.924 41.667 5.50 0.00 46.26 3.41
4773 5367 4.090761 AGTCAGCCATGTATGTTATGGG 57.909 45.455 6.19 0.00 44.21 4.00
4777 5371 5.009010 GTCAGCCATGTATGTTATGGGAAAG 59.991 44.000 6.19 0.00 44.21 2.62
4785 5379 9.123902 CATGTATGTTATGGGAAAGAAATCAGA 57.876 33.333 0.00 0.00 0.00 3.27
4837 5431 9.554395 TCTTTTCTTTTCAATTTTGGTATTCCC 57.446 29.630 0.00 0.00 0.00 3.97
4838 5432 9.336171 CTTTTCTTTTCAATTTTGGTATTCCCA 57.664 29.630 0.00 0.00 43.27 4.37
4857 5451 2.875296 CAAGGAGTTTCCATGGAACCA 58.125 47.619 27.04 10.90 39.61 3.67
4874 5641 1.967066 ACCATGTTCCAAAAATCCGCA 59.033 42.857 0.00 0.00 0.00 5.69
4905 5672 4.942483 AGAGATGCTCTTGAAAAGGTCATG 59.058 41.667 0.00 0.00 46.24 3.07
4906 5673 3.442977 AGATGCTCTTGAAAAGGTCATGC 59.557 43.478 0.00 0.00 46.24 4.06
4907 5674 1.536766 TGCTCTTGAAAAGGTCATGCG 59.463 47.619 0.00 0.00 46.24 4.73
4908 5675 1.806542 GCTCTTGAAAAGGTCATGCGA 59.193 47.619 0.00 0.00 46.24 5.10
4909 5676 2.413371 GCTCTTGAAAAGGTCATGCGAC 60.413 50.000 0.00 0.00 46.24 5.19
4931 5698 4.646492 ACCATTGAAATATTGGTCTCTGCC 59.354 41.667 0.00 0.00 38.35 4.85
4932 5699 4.038402 CCATTGAAATATTGGTCTCTGCCC 59.962 45.833 0.00 0.00 0.00 5.36
4933 5700 4.591321 TTGAAATATTGGTCTCTGCCCT 57.409 40.909 0.00 0.00 0.00 5.19
4934 5701 5.708736 TTGAAATATTGGTCTCTGCCCTA 57.291 39.130 0.00 0.00 0.00 3.53
4935 5702 5.708736 TGAAATATTGGTCTCTGCCCTAA 57.291 39.130 0.00 0.00 0.00 2.69
4936 5703 6.073447 TGAAATATTGGTCTCTGCCCTAAA 57.927 37.500 0.00 0.00 0.00 1.85
4937 5704 6.489603 TGAAATATTGGTCTCTGCCCTAAAA 58.510 36.000 0.00 0.00 0.00 1.52
4938 5705 7.125391 TGAAATATTGGTCTCTGCCCTAAAAT 58.875 34.615 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.558286 GCACCTGCACTGCACATGT 61.558 57.895 0.00 0.00 41.59 3.21
23 24 4.323104 GCTGGACATGTTCTAGAACCTCTT 60.323 45.833 28.43 13.10 40.46 2.85
28 38 3.265791 CTGGCTGGACATGTTCTAGAAC 58.734 50.000 25.73 25.73 41.50 3.01
38 48 1.980784 CTGGCTAGCTGGCTGGACAT 61.981 60.000 22.23 0.00 41.73 3.06
51 61 2.898920 GATTGCTGGCTGGCTGGCTA 62.899 60.000 18.27 11.75 42.34 3.93
120 136 1.523711 CCAAGTCGGCACTGTGTGT 60.524 57.895 9.86 0.00 35.75 3.72
121 137 2.253758 CCCAAGTCGGCACTGTGTG 61.254 63.158 9.86 2.85 36.51 3.82
122 138 2.111043 CCCAAGTCGGCACTGTGT 59.889 61.111 9.86 0.00 31.06 3.72
135 151 3.849951 GATCGGAGCGAGGCCCAA 61.850 66.667 0.00 0.00 39.91 4.12
158 174 4.722361 ACTCTAGTCCGAGAAAATCACC 57.278 45.455 0.00 0.00 35.06 4.02
169 185 3.822167 GGAGGAAGGAATACTCTAGTCCG 59.178 52.174 0.00 0.00 46.94 4.79
277 322 4.662961 TGGTGCGCGTGAGGTGAG 62.663 66.667 8.43 0.00 0.00 3.51
278 323 4.961511 GTGGTGCGCGTGAGGTGA 62.962 66.667 8.43 0.00 0.00 4.02
296 341 2.141122 AACGTGCGGGATTTGCTTGG 62.141 55.000 0.00 0.00 0.00 3.61
353 411 6.447084 TGATTATTTTTAGTCCCCTCCTCACT 59.553 38.462 0.00 0.00 0.00 3.41
354 412 6.542735 GTGATTATTTTTAGTCCCCTCCTCAC 59.457 42.308 0.00 0.00 0.00 3.51
355 413 6.631766 CGTGATTATTTTTAGTCCCCTCCTCA 60.632 42.308 0.00 0.00 0.00 3.86
358 425 4.820173 CCGTGATTATTTTTAGTCCCCTCC 59.180 45.833 0.00 0.00 0.00 4.30
365 432 2.538132 GCGCGCCGTGATTATTTTTAGT 60.538 45.455 23.24 0.00 0.00 2.24
496 584 4.082523 CGAGAAGGGGAAGCCGCA 62.083 66.667 3.30 0.00 39.05 5.69
499 587 1.838073 TTGGTCGAGAAGGGGAAGCC 61.838 60.000 0.00 0.00 0.00 4.35
514 602 1.241315 CCGCGGATTTTGGAGTTGGT 61.241 55.000 24.07 0.00 0.00 3.67
516 604 1.154035 GCCGCGGATTTTGGAGTTG 60.154 57.895 33.48 0.00 0.00 3.16
572 662 2.922335 GCGGATTTCTTCTTGCCACAAC 60.922 50.000 0.00 0.00 0.00 3.32
585 675 1.154035 CCCAAACAGCGCGGATTTC 60.154 57.895 16.26 0.00 0.00 2.17
601 691 2.747855 CTGCTCAAACGAGGCCCC 60.748 66.667 0.00 0.00 0.00 5.80
602 692 2.747855 CCTGCTCAAACGAGGCCC 60.748 66.667 0.00 0.00 0.00 5.80
603 693 1.743252 CTCCTGCTCAAACGAGGCC 60.743 63.158 0.00 0.00 0.00 5.19
606 696 2.815478 GGATACTCCTGCTCAAACGAG 58.185 52.381 0.00 0.00 32.53 4.18
607 697 2.961526 GGATACTCCTGCTCAAACGA 57.038 50.000 0.00 0.00 32.53 3.85
621 711 3.127030 CCAACAGGAAAAAGCGAGGATAC 59.873 47.826 0.00 0.00 0.00 2.24
622 712 3.343617 CCAACAGGAAAAAGCGAGGATA 58.656 45.455 0.00 0.00 0.00 2.59
623 713 2.162681 CCAACAGGAAAAAGCGAGGAT 58.837 47.619 0.00 0.00 0.00 3.24
624 714 1.604604 CCAACAGGAAAAAGCGAGGA 58.395 50.000 0.00 0.00 0.00 3.71
625 715 0.598065 CCCAACAGGAAAAAGCGAGG 59.402 55.000 0.00 0.00 38.24 4.63
626 716 1.537202 CTCCCAACAGGAAAAAGCGAG 59.463 52.381 0.00 0.00 46.94 5.03
627 717 1.133915 ACTCCCAACAGGAAAAAGCGA 60.134 47.619 0.00 0.00 46.94 4.93
628 718 1.318576 ACTCCCAACAGGAAAAAGCG 58.681 50.000 0.00 0.00 46.94 4.68
629 719 2.035961 GGAACTCCCAACAGGAAAAAGC 59.964 50.000 0.00 0.00 46.94 3.51
630 720 3.319122 CAGGAACTCCCAACAGGAAAAAG 59.681 47.826 0.00 0.00 46.94 2.27
631 721 3.295973 CAGGAACTCCCAACAGGAAAAA 58.704 45.455 0.00 0.00 46.94 1.94
632 722 2.944129 CAGGAACTCCCAACAGGAAAA 58.056 47.619 0.00 0.00 46.94 2.29
633 723 1.478654 GCAGGAACTCCCAACAGGAAA 60.479 52.381 0.00 0.00 46.94 3.13
634 724 0.110486 GCAGGAACTCCCAACAGGAA 59.890 55.000 0.00 0.00 46.94 3.36
635 725 0.768221 AGCAGGAACTCCCAACAGGA 60.768 55.000 0.00 0.00 44.91 3.86
636 726 0.111253 AAGCAGGAACTCCCAACAGG 59.889 55.000 0.00 0.00 34.60 4.00
637 727 1.242076 CAAGCAGGAACTCCCAACAG 58.758 55.000 0.00 0.00 34.60 3.16
638 728 0.823356 GCAAGCAGGAACTCCCAACA 60.823 55.000 0.00 0.00 34.60 3.33
639 729 0.538287 AGCAAGCAGGAACTCCCAAC 60.538 55.000 0.00 0.00 34.60 3.77
666 756 0.872388 CCAAGAAACCCGACGAAAGG 59.128 55.000 0.00 0.00 0.00 3.11
670 760 1.000506 CTCTTCCAAGAAACCCGACGA 59.999 52.381 0.00 0.00 34.03 4.20
671 761 1.000506 TCTCTTCCAAGAAACCCGACG 59.999 52.381 0.00 0.00 34.03 5.12
674 764 3.674997 TGAATCTCTTCCAAGAAACCCG 58.325 45.455 0.00 0.00 34.03 5.28
677 767 5.893897 AGCATGAATCTCTTCCAAGAAAC 57.106 39.130 0.00 0.00 34.03 2.78
686 776 3.937706 CACGAAGGAAGCATGAATCTCTT 59.062 43.478 0.00 0.00 0.00 2.85
731 823 3.390639 ACCCAAGAAAACCATGCAAATCA 59.609 39.130 0.00 0.00 0.00 2.57
736 828 2.676748 AGAACCCAAGAAAACCATGCA 58.323 42.857 0.00 0.00 0.00 3.96
805 898 2.489329 CTCAAATGATTGCGGAAGTGGT 59.511 45.455 0.00 0.00 36.45 4.16
845 953 0.613012 AGCTTTTGTCCCATGCTCCC 60.613 55.000 0.00 0.00 0.00 4.30
882 990 0.883833 AATCCGAGCACAAGCCTTTG 59.116 50.000 0.00 0.00 43.56 2.77
883 991 1.270550 CAAATCCGAGCACAAGCCTTT 59.729 47.619 0.00 0.00 43.56 3.11
884 992 0.883833 CAAATCCGAGCACAAGCCTT 59.116 50.000 0.00 0.00 43.56 4.35
885 993 0.036732 TCAAATCCGAGCACAAGCCT 59.963 50.000 0.00 0.00 43.56 4.58
886 994 0.169009 GTCAAATCCGAGCACAAGCC 59.831 55.000 0.00 0.00 43.56 4.35
887 995 0.874390 TGTCAAATCCGAGCACAAGC 59.126 50.000 0.00 0.00 42.56 4.01
890 998 0.107643 TGGTGTCAAATCCGAGCACA 59.892 50.000 0.00 0.00 0.00 4.57
891 999 1.131126 CATGGTGTCAAATCCGAGCAC 59.869 52.381 0.00 0.00 0.00 4.40
892 1000 1.452110 CATGGTGTCAAATCCGAGCA 58.548 50.000 0.00 0.00 0.00 4.26
910 1021 3.273434 GTCTACTTGATGATGCTTGGCA 58.727 45.455 0.00 0.00 44.86 4.92
911 1022 2.286294 CGTCTACTTGATGATGCTTGGC 59.714 50.000 0.00 0.00 33.63 4.52
912 1023 2.286294 GCGTCTACTTGATGATGCTTGG 59.714 50.000 0.00 0.00 40.78 3.61
913 1024 2.034254 CGCGTCTACTTGATGATGCTTG 60.034 50.000 0.00 0.00 41.52 4.01
914 1025 2.159240 TCGCGTCTACTTGATGATGCTT 60.159 45.455 5.77 0.00 41.52 3.91
915 1026 1.405463 TCGCGTCTACTTGATGATGCT 59.595 47.619 5.77 0.00 41.52 3.79
916 1027 1.783711 CTCGCGTCTACTTGATGATGC 59.216 52.381 5.77 0.00 40.62 3.91
956 1073 2.370445 TGGGCAGGAGGAAGCTAGC 61.370 63.158 6.62 6.62 0.00 3.42
957 1074 0.980231 AGTGGGCAGGAGGAAGCTAG 60.980 60.000 0.00 0.00 0.00 3.42
963 1083 4.741239 GGGGAGTGGGCAGGAGGA 62.741 72.222 0.00 0.00 0.00 3.71
1224 1364 1.384989 CGAGGAAGAAGCCGCTCCTA 61.385 60.000 0.00 0.00 0.00 2.94
1231 1371 0.321996 AAGTGGTCGAGGAAGAAGCC 59.678 55.000 0.00 0.00 0.00 4.35
1377 1526 1.683365 GCCGGTGTAGAGGTACCCA 60.683 63.158 8.74 0.00 33.32 4.51
1386 1535 4.077184 TTGAGGCGGCCGGTGTAG 62.077 66.667 29.38 0.00 0.00 2.74
1473 1622 4.990288 GACTCCACCACGAAGTCC 57.010 61.111 0.00 0.00 41.61 3.85
1485 1634 4.509737 GCGGCGTAGGTGGACTCC 62.510 72.222 9.37 0.00 0.00 3.85
1547 1696 9.368416 AGAGGTAGTATCTGTTGCTGATTATTA 57.632 33.333 0.00 0.00 0.00 0.98
1549 1698 7.507277 TCAGAGGTAGTATCTGTTGCTGATTAT 59.493 37.037 3.14 0.00 43.79 1.28
1554 1703 4.158579 TGTCAGAGGTAGTATCTGTTGCTG 59.841 45.833 3.14 0.00 43.79 4.41
1579 1728 6.538742 AGGTGTATATGTATGTGTTGTTCAGC 59.461 38.462 0.00 0.00 0.00 4.26
1583 1737 6.533723 CGTCAGGTGTATATGTATGTGTTGTT 59.466 38.462 0.00 0.00 0.00 2.83
1739 1926 4.927425 GCTATGTTTACAAAGTCGGACAGA 59.073 41.667 11.27 0.00 0.00 3.41
1754 1941 2.237392 GTCCTCCACCAGAGCTATGTTT 59.763 50.000 7.70 0.00 41.74 2.83
1838 2025 3.348647 TTCGATCCTGCAATCCTTTGA 57.651 42.857 0.00 0.00 34.60 2.69
1841 2028 3.209410 GACATTCGATCCTGCAATCCTT 58.791 45.455 0.00 0.00 0.00 3.36
1842 2029 2.804572 CGACATTCGATCCTGCAATCCT 60.805 50.000 0.00 0.00 43.74 3.24
1845 2032 2.602257 TCGACATTCGATCCTGCAAT 57.398 45.000 0.00 0.00 44.82 3.56
1856 2043 0.804933 GGTACCGGCTGTCGACATTC 60.805 60.000 20.40 13.63 42.43 2.67
1858 2045 1.664321 GAGGTACCGGCTGTCGACAT 61.664 60.000 20.40 6.25 42.43 3.06
1859 2046 2.282674 AGGTACCGGCTGTCGACA 60.283 61.111 18.88 18.88 42.43 4.35
1889 2076 4.301505 GCAAATGCCTCGTCTGGA 57.698 55.556 0.00 0.00 34.31 3.86
1913 2100 0.460311 AGTATCGCCGGAACTCCTTG 59.540 55.000 5.05 0.00 0.00 3.61
1970 2157 1.301716 GACCTTCTTGGCGTGCTCA 60.302 57.895 0.00 0.00 40.22 4.26
2042 2229 0.108472 TGATCGCAGACTCTTGCAGG 60.108 55.000 0.00 0.00 44.28 4.85
2045 2232 0.108424 AGGTGATCGCAGACTCTTGC 60.108 55.000 8.82 0.00 42.51 4.01
2099 2286 0.099436 GCACTTTGGGCTCGCAATAG 59.901 55.000 0.21 4.45 0.00 1.73
2105 2292 0.674895 AAGCTAGCACTTTGGGCTCG 60.675 55.000 18.83 0.00 42.62 5.03
2345 2532 3.244665 TGCTTCTCTCCTTGCATTTCTCA 60.245 43.478 0.00 0.00 0.00 3.27
2444 2631 2.342648 GTGGCGACCGAAACCTCT 59.657 61.111 0.00 0.00 0.00 3.69
2456 2643 2.489275 AACCAGCAAAGGTGTGGCG 61.489 57.895 0.00 0.00 42.25 5.69
2474 2661 3.084039 GAGCCTCATGTGGAAATTGTCA 58.916 45.455 17.98 0.00 0.00 3.58
2611 2798 7.344093 TCAAAACTCTCTCTACCATGAGATCAT 59.656 37.037 0.00 0.00 41.59 2.45
2638 2832 3.503748 AGAAGGAAAAGAGCACCGAATTG 59.496 43.478 0.00 0.00 0.00 2.32
2662 2856 6.545666 TCAGAAACCTGTGCTTCTAAATTCAA 59.454 34.615 0.00 0.00 30.68 2.69
2679 2873 5.515797 AAAAACTAAGCCTGTCAGAAACC 57.484 39.130 0.00 0.00 0.00 3.27
2706 2900 8.141909 TCGCTATCACAAATAGCAAATACTACT 58.858 33.333 15.21 0.00 45.32 2.57
2707 2901 8.294341 TCGCTATCACAAATAGCAAATACTAC 57.706 34.615 15.21 0.00 45.32 2.73
2819 3239 7.746703 TCTTTCTAGCTAGGAAAAGAAAAGGT 58.253 34.615 24.69 0.00 37.47 3.50
2875 3295 7.307694 CAACTGCATAGACACACACAAATATT 58.692 34.615 0.00 0.00 0.00 1.28
2882 3302 1.197721 GGCAACTGCATAGACACACAC 59.802 52.381 3.76 0.00 44.36 3.82
2926 3347 0.599558 GCATGACAAGCTTGGCTTCA 59.400 50.000 31.61 23.99 46.77 3.02
2947 3368 3.871006 CGGTTGAATCTGCTTGTGCTATA 59.129 43.478 0.00 0.00 40.48 1.31
2959 3380 2.814336 GGCAAACTCTTCGGTTGAATCT 59.186 45.455 0.00 0.00 32.61 2.40
2962 3383 0.941542 CGGCAAACTCTTCGGTTGAA 59.058 50.000 0.00 0.00 0.00 2.69
3139 3561 9.261180 TCGTAAATCTATTAGCAAGGAGAAATG 57.739 33.333 0.00 0.00 0.00 2.32
3181 3603 2.910319 TGGAGCTCCTTAAACTAGCCAA 59.090 45.455 32.28 5.35 36.92 4.52
3192 3614 6.884836 ACGAGTAAAAATATTTGGAGCTCCTT 59.115 34.615 32.28 18.03 36.82 3.36
3194 3616 6.315393 TCACGAGTAAAAATATTTGGAGCTCC 59.685 38.462 26.78 26.78 0.00 4.70
3196 3618 7.681939 TTCACGAGTAAAAATATTTGGAGCT 57.318 32.000 0.39 0.00 0.00 4.09
3197 3619 9.434559 GTATTCACGAGTAAAAATATTTGGAGC 57.565 33.333 0.39 0.00 0.00 4.70
3214 3636 9.961266 CGTTATACTTCAAAATTGTATTCACGA 57.039 29.630 0.00 0.00 35.96 4.35
3215 3637 9.961266 TCGTTATACTTCAAAATTGTATTCACG 57.039 29.630 0.00 0.00 35.64 4.35
3232 3654 9.257651 GGCTGTTAATGTATTCTTCGTTATACT 57.742 33.333 0.00 0.00 0.00 2.12
3233 3655 8.493547 GGGCTGTTAATGTATTCTTCGTTATAC 58.506 37.037 0.00 0.00 0.00 1.47
3234 3656 8.205512 TGGGCTGTTAATGTATTCTTCGTTATA 58.794 33.333 0.00 0.00 0.00 0.98
3237 3659 5.250200 TGGGCTGTTAATGTATTCTTCGTT 58.750 37.500 0.00 0.00 0.00 3.85
3238 3660 4.839121 TGGGCTGTTAATGTATTCTTCGT 58.161 39.130 0.00 0.00 0.00 3.85
3239 3661 5.220854 CCTTGGGCTGTTAATGTATTCTTCG 60.221 44.000 0.00 0.00 0.00 3.79
3240 3662 5.652452 ACCTTGGGCTGTTAATGTATTCTTC 59.348 40.000 0.00 0.00 0.00 2.87
3241 3663 5.580022 ACCTTGGGCTGTTAATGTATTCTT 58.420 37.500 0.00 0.00 0.00 2.52
3242 3664 5.193099 ACCTTGGGCTGTTAATGTATTCT 57.807 39.130 0.00 0.00 0.00 2.40
3244 3666 5.763204 CGATACCTTGGGCTGTTAATGTATT 59.237 40.000 0.00 0.00 0.00 1.89
3245 3667 5.163237 ACGATACCTTGGGCTGTTAATGTAT 60.163 40.000 0.00 0.00 0.00 2.29
3247 3669 3.054655 ACGATACCTTGGGCTGTTAATGT 60.055 43.478 0.00 0.00 0.00 2.71
3248 3670 3.541632 ACGATACCTTGGGCTGTTAATG 58.458 45.455 0.00 0.00 0.00 1.90
3249 3671 3.199071 TGACGATACCTTGGGCTGTTAAT 59.801 43.478 0.00 0.00 0.00 1.40
3250 3672 2.568062 TGACGATACCTTGGGCTGTTAA 59.432 45.455 0.00 0.00 0.00 2.01
3251 3673 2.181125 TGACGATACCTTGGGCTGTTA 58.819 47.619 0.00 0.00 0.00 2.41
3254 3676 1.134401 ACATGACGATACCTTGGGCTG 60.134 52.381 0.00 0.00 0.00 4.85
3257 3679 2.432874 TGGTACATGACGATACCTTGGG 59.567 50.000 0.00 0.00 41.36 4.12
3279 3806 9.931698 TCCTACTAGATTGAACTATCCTGTAAA 57.068 33.333 0.00 0.00 0.00 2.01
3283 3810 9.184523 CCTATCCTACTAGATTGAACTATCCTG 57.815 40.741 0.00 0.00 0.00 3.86
3284 3811 9.129870 TCCTATCCTACTAGATTGAACTATCCT 57.870 37.037 0.00 0.00 0.00 3.24
3285 3812 9.756571 TTCCTATCCTACTAGATTGAACTATCC 57.243 37.037 0.00 0.00 0.00 2.59
3331 3858 0.884704 ATCGCATACCCACGGCAATC 60.885 55.000 0.00 0.00 0.00 2.67
3336 3863 0.950555 CCATCATCGCATACCCACGG 60.951 60.000 0.00 0.00 0.00 4.94
3337 3864 1.568612 GCCATCATCGCATACCCACG 61.569 60.000 0.00 0.00 0.00 4.94
3340 3867 1.537202 GAAAGCCATCATCGCATACCC 59.463 52.381 0.00 0.00 0.00 3.69
3356 3885 7.798596 AATCTTGTATGCTAGGTCATGAAAG 57.201 36.000 0.00 0.00 0.00 2.62
3361 3890 8.627403 CAAATCAAATCTTGTATGCTAGGTCAT 58.373 33.333 0.00 0.00 0.00 3.06
3362 3891 7.067372 CCAAATCAAATCTTGTATGCTAGGTCA 59.933 37.037 0.00 0.00 0.00 4.02
3406 3935 2.182014 AGTTCAAGCAAACGCGTTTTC 58.818 42.857 33.05 28.26 34.27 2.29
3413 3942 3.806316 ATCGGTTAGTTCAAGCAAACG 57.194 42.857 0.00 0.00 34.13 3.60
3430 3959 5.883661 AGCAAAATTGAAGACCACATATCG 58.116 37.500 0.00 0.00 0.00 2.92
3436 3965 7.713764 ATGTAAAAGCAAAATTGAAGACCAC 57.286 32.000 0.00 0.00 0.00 4.16
3460 3993 7.889600 AGGGGACGTATGGTAAAGAAAATTTAA 59.110 33.333 0.00 0.00 0.00 1.52
3464 3997 5.045432 TGAGGGGACGTATGGTAAAGAAAAT 60.045 40.000 0.00 0.00 0.00 1.82
3469 4002 3.197116 AGTTGAGGGGACGTATGGTAAAG 59.803 47.826 0.00 0.00 0.00 1.85
3470 4003 3.175594 AGTTGAGGGGACGTATGGTAAA 58.824 45.455 0.00 0.00 0.00 2.01
3477 4011 4.160252 GGTAATGTAAGTTGAGGGGACGTA 59.840 45.833 0.00 0.00 0.00 3.57
3479 4013 3.197116 AGGTAATGTAAGTTGAGGGGACG 59.803 47.826 0.00 0.00 0.00 4.79
3541 4075 7.410991 AGAGTTTATAAGGGGTTTGCATAAGT 58.589 34.615 0.00 0.00 0.00 2.24
3553 4087 7.663043 AGAGTACTGGAAGAGTTTATAAGGG 57.337 40.000 0.00 0.00 37.43 3.95
3554 4088 8.973182 AGAAGAGTACTGGAAGAGTTTATAAGG 58.027 37.037 0.00 0.00 37.43 2.69
3593 4134 1.535462 GCACCAGTTACCATGTGACAC 59.465 52.381 0.00 0.00 0.00 3.67
3600 4141 4.962995 AGACTACATAGCACCAGTTACCAT 59.037 41.667 0.00 0.00 0.00 3.55
3601 4142 4.159693 CAGACTACATAGCACCAGTTACCA 59.840 45.833 0.00 0.00 0.00 3.25
3603 4144 5.326200 ACAGACTACATAGCACCAGTTAC 57.674 43.478 0.00 0.00 0.00 2.50
3604 4145 7.655521 AATACAGACTACATAGCACCAGTTA 57.344 36.000 0.00 0.00 0.00 2.24
3605 4146 6.546428 AATACAGACTACATAGCACCAGTT 57.454 37.500 0.00 0.00 0.00 3.16
3606 4147 6.546428 AAATACAGACTACATAGCACCAGT 57.454 37.500 0.00 0.00 0.00 4.00
3749 4319 1.962822 CTCAGCACTGCCGCTTTCA 60.963 57.895 0.00 0.00 41.38 2.69
3764 4334 0.485543 TCCTGGTGTACTGGTCCTCA 59.514 55.000 0.00 0.00 39.12 3.86
3878 4448 1.452108 CTTTCCATCACCCCTCGGC 60.452 63.158 0.00 0.00 0.00 5.54
3941 4511 0.174617 TTGGCGACATCGAGCATACA 59.825 50.000 5.26 0.00 42.32 2.29
3944 4514 0.807667 GACTTGGCGACATCGAGCAT 60.808 55.000 5.26 0.00 42.32 3.79
3960 4530 0.804989 CCGTCGTTAACCTACCGACT 59.195 55.000 12.06 0.00 46.45 4.18
3992 4564 3.869272 GAAGCCATCACGCGCCTG 61.869 66.667 5.73 0.00 0.00 4.85
3996 4568 3.257561 CTCCGAAGCCATCACGCG 61.258 66.667 3.53 3.53 0.00 6.01
3998 4570 1.227089 CCTCTCCGAAGCCATCACG 60.227 63.158 0.00 0.00 0.00 4.35
3999 4571 0.460987 CACCTCTCCGAAGCCATCAC 60.461 60.000 0.00 0.00 0.00 3.06
4000 4572 1.617018 CCACCTCTCCGAAGCCATCA 61.617 60.000 0.00 0.00 0.00 3.07
4001 4573 1.144936 CCACCTCTCCGAAGCCATC 59.855 63.158 0.00 0.00 0.00 3.51
4002 4574 2.370445 CCCACCTCTCCGAAGCCAT 61.370 63.158 0.00 0.00 0.00 4.40
4003 4575 3.003173 CCCACCTCTCCGAAGCCA 61.003 66.667 0.00 0.00 0.00 4.75
4004 4576 3.787001 CCCCACCTCTCCGAAGCC 61.787 72.222 0.00 0.00 0.00 4.35
4005 4577 3.003763 ACCCCACCTCTCCGAAGC 61.004 66.667 0.00 0.00 0.00 3.86
4006 4578 2.660064 CCACCCCACCTCTCCGAAG 61.660 68.421 0.00 0.00 0.00 3.79
4200 4774 1.070758 ACAATGACTGTGAAGAGCGGT 59.929 47.619 0.00 0.00 36.69 5.68
4201 4775 1.800805 ACAATGACTGTGAAGAGCGG 58.199 50.000 0.00 0.00 36.69 5.52
4219 4794 2.812591 CCTGAGCATGCAAGATGGATAC 59.187 50.000 21.98 0.00 0.00 2.24
4258 4833 5.828299 TCAAACGAACCTTCAAAATCAGT 57.172 34.783 0.00 0.00 0.00 3.41
4259 4834 5.687285 CCTTCAAACGAACCTTCAAAATCAG 59.313 40.000 0.00 0.00 0.00 2.90
4260 4835 5.126384 ACCTTCAAACGAACCTTCAAAATCA 59.874 36.000 0.00 0.00 0.00 2.57
4261 4836 5.588240 ACCTTCAAACGAACCTTCAAAATC 58.412 37.500 0.00 0.00 0.00 2.17
4262 4837 5.592104 ACCTTCAAACGAACCTTCAAAAT 57.408 34.783 0.00 0.00 0.00 1.82
4264 4839 4.459685 TGAACCTTCAAACGAACCTTCAAA 59.540 37.500 0.00 0.00 33.55 2.69
4265 4840 4.011023 TGAACCTTCAAACGAACCTTCAA 58.989 39.130 0.00 0.00 33.55 2.69
4266 4841 3.611970 TGAACCTTCAAACGAACCTTCA 58.388 40.909 0.00 0.00 33.55 3.02
4267 4842 3.003378 CCTGAACCTTCAAACGAACCTTC 59.997 47.826 0.00 0.00 36.64 3.46
4268 4843 2.949644 CCTGAACCTTCAAACGAACCTT 59.050 45.455 0.00 0.00 36.64 3.50
4269 4844 2.572290 CCTGAACCTTCAAACGAACCT 58.428 47.619 0.00 0.00 36.64 3.50
4270 4845 1.001706 GCCTGAACCTTCAAACGAACC 60.002 52.381 0.00 0.00 36.64 3.62
4271 4846 1.673920 TGCCTGAACCTTCAAACGAAC 59.326 47.619 0.00 0.00 36.64 3.95
4272 4847 2.045561 TGCCTGAACCTTCAAACGAA 57.954 45.000 0.00 0.00 36.64 3.85
4273 4848 1.879380 CATGCCTGAACCTTCAAACGA 59.121 47.619 0.00 0.00 36.64 3.85
4274 4849 1.879380 TCATGCCTGAACCTTCAAACG 59.121 47.619 0.00 0.00 36.64 3.60
4275 4850 3.507233 TCATCATGCCTGAACCTTCAAAC 59.493 43.478 0.00 0.00 36.64 2.93
4276 4851 3.765381 TCATCATGCCTGAACCTTCAAA 58.235 40.909 0.00 0.00 36.64 2.69
4277 4852 3.438216 TCATCATGCCTGAACCTTCAA 57.562 42.857 0.00 0.00 36.64 2.69
4311 4905 1.936547 CCTGGCGTTCTCAAGATTAGC 59.063 52.381 0.00 0.00 0.00 3.09
4312 4906 2.168521 TCCCTGGCGTTCTCAAGATTAG 59.831 50.000 0.00 0.00 0.00 1.73
4313 4907 2.184533 TCCCTGGCGTTCTCAAGATTA 58.815 47.619 0.00 0.00 0.00 1.75
4314 4908 0.984230 TCCCTGGCGTTCTCAAGATT 59.016 50.000 0.00 0.00 0.00 2.40
4315 4909 1.207791 ATCCCTGGCGTTCTCAAGAT 58.792 50.000 0.00 0.00 0.00 2.40
4316 4910 0.984230 AATCCCTGGCGTTCTCAAGA 59.016 50.000 0.00 0.00 0.00 3.02
4317 4911 1.470098 CAAATCCCTGGCGTTCTCAAG 59.530 52.381 0.00 0.00 0.00 3.02
4318 4912 1.202879 ACAAATCCCTGGCGTTCTCAA 60.203 47.619 0.00 0.00 0.00 3.02
4319 4913 0.400213 ACAAATCCCTGGCGTTCTCA 59.600 50.000 0.00 0.00 0.00 3.27
4320 4914 0.804989 CACAAATCCCTGGCGTTCTC 59.195 55.000 0.00 0.00 0.00 2.87
4321 4915 1.244019 GCACAAATCCCTGGCGTTCT 61.244 55.000 0.00 0.00 0.00 3.01
4322 4916 1.212751 GCACAAATCCCTGGCGTTC 59.787 57.895 0.00 0.00 0.00 3.95
4323 4917 0.899717 ATGCACAAATCCCTGGCGTT 60.900 50.000 0.00 0.00 0.00 4.84
4324 4918 0.034574 TATGCACAAATCCCTGGCGT 60.035 50.000 0.00 0.00 0.00 5.68
4325 4919 1.102154 TTATGCACAAATCCCTGGCG 58.898 50.000 0.00 0.00 0.00 5.69
4326 4920 2.233431 TGTTTATGCACAAATCCCTGGC 59.767 45.455 0.00 0.00 0.00 4.85
4342 4936 8.445275 ACACTACTGTTGATGTTTCATGTTTA 57.555 30.769 0.00 0.00 0.00 2.01
4359 4953 4.509970 TGTTTTCGATCACCAACACTACTG 59.490 41.667 0.00 0.00 0.00 2.74
4371 4965 0.584396 GGTGTGCGTGTTTTCGATCA 59.416 50.000 0.00 0.00 0.00 2.92
4373 4967 0.816018 TGGGTGTGCGTGTTTTCGAT 60.816 50.000 0.00 0.00 0.00 3.59
4392 4986 6.988580 TCTTTGATCGAATTCACTATCTGCAT 59.011 34.615 6.22 0.00 0.00 3.96
4393 4987 6.340522 TCTTTGATCGAATTCACTATCTGCA 58.659 36.000 6.22 0.00 0.00 4.41
4440 5034 9.571816 AATGTTTGATGTACCAAAAATCCATTT 57.428 25.926 2.01 0.00 37.72 2.32
4445 5039 8.213812 CGACAAATGTTTGATGTACCAAAAATC 58.786 33.333 12.09 0.00 40.55 2.17
4447 5041 7.221067 GTCGACAAATGTTTGATGTACCAAAAA 59.779 33.333 11.55 0.00 40.55 1.94
4449 5043 6.202937 GTCGACAAATGTTTGATGTACCAAA 58.797 36.000 11.55 0.00 40.55 3.28
4464 5058 4.572389 GCATGAGTAGAATGGTCGACAAAT 59.428 41.667 18.91 7.55 32.20 2.32
4487 5081 4.911610 GTCATTCCTCACAAAAACATCGTG 59.088 41.667 0.00 0.00 0.00 4.35
4492 5086 3.383185 GGGTGTCATTCCTCACAAAAACA 59.617 43.478 0.00 0.00 36.43 2.83
4496 5090 3.650942 ACTAGGGTGTCATTCCTCACAAA 59.349 43.478 0.00 0.00 36.43 2.83
4497 5091 3.007940 CACTAGGGTGTCATTCCTCACAA 59.992 47.826 0.00 0.00 38.54 3.33
4498 5092 2.567169 CACTAGGGTGTCATTCCTCACA 59.433 50.000 0.00 0.00 38.54 3.58
4501 5095 3.515901 ACTTCACTAGGGTGTCATTCCTC 59.484 47.826 0.00 0.00 43.41 3.71
4502 5096 3.261897 CACTTCACTAGGGTGTCATTCCT 59.738 47.826 0.00 3.63 43.41 3.36
4503 5097 3.600388 CACTTCACTAGGGTGTCATTCC 58.400 50.000 0.00 0.00 43.41 3.01
4504 5098 3.260884 TCCACTTCACTAGGGTGTCATTC 59.739 47.826 0.00 0.00 43.41 2.67
4505 5099 3.248024 TCCACTTCACTAGGGTGTCATT 58.752 45.455 0.00 0.00 43.41 2.57
4506 5100 2.902608 TCCACTTCACTAGGGTGTCAT 58.097 47.619 0.00 0.00 43.41 3.06
4507 5101 2.391926 TCCACTTCACTAGGGTGTCA 57.608 50.000 0.00 0.00 43.41 3.58
4508 5102 3.260884 TCATTCCACTTCACTAGGGTGTC 59.739 47.826 0.00 0.00 43.41 3.67
4509 5103 3.008049 GTCATTCCACTTCACTAGGGTGT 59.992 47.826 0.00 0.00 43.41 4.16
4510 5104 3.007940 TGTCATTCCACTTCACTAGGGTG 59.992 47.826 0.00 0.00 44.23 4.61
4511 5105 3.008049 GTGTCATTCCACTTCACTAGGGT 59.992 47.826 0.00 0.00 32.50 4.34
4512 5106 3.600388 GTGTCATTCCACTTCACTAGGG 58.400 50.000 0.00 0.00 32.50 3.53
4513 5107 3.600388 GGTGTCATTCCACTTCACTAGG 58.400 50.000 0.00 0.00 35.63 3.02
4514 5108 3.261897 AGGGTGTCATTCCACTTCACTAG 59.738 47.826 0.00 0.00 35.63 2.57
4515 5109 3.248024 AGGGTGTCATTCCACTTCACTA 58.752 45.455 0.00 0.00 35.63 2.74
4516 5110 2.057922 AGGGTGTCATTCCACTTCACT 58.942 47.619 0.00 0.00 35.63 3.41
4517 5111 2.568623 AGGGTGTCATTCCACTTCAC 57.431 50.000 0.00 0.00 35.63 3.18
4518 5112 3.007940 CACTAGGGTGTCATTCCACTTCA 59.992 47.826 0.00 0.00 38.54 3.02
4519 5113 3.260884 TCACTAGGGTGTCATTCCACTTC 59.739 47.826 0.00 0.00 43.41 3.01
4520 5114 3.248024 TCACTAGGGTGTCATTCCACTT 58.752 45.455 0.00 0.00 43.41 3.16
4521 5115 2.902608 TCACTAGGGTGTCATTCCACT 58.097 47.619 0.00 0.00 43.41 4.00
4522 5116 3.695830 TTCACTAGGGTGTCATTCCAC 57.304 47.619 0.00 0.00 43.41 4.02
4523 5117 4.927267 ATTTCACTAGGGTGTCATTCCA 57.073 40.909 0.00 0.00 43.41 3.53
4556 5150 8.980481 ATATTGTTTCAAGGAATAGTAGGGTG 57.020 34.615 0.00 0.00 0.00 4.61
4612 5206 4.837860 ACACCCTTGATATTCCAGCAAAAA 59.162 37.500 0.00 0.00 30.75 1.94
4620 5214 4.514401 AGAAACGACACCCTTGATATTCC 58.486 43.478 0.00 0.00 0.00 3.01
4641 5235 8.398665 GGGAGTAGCATATAAAGTTTCACAAAG 58.601 37.037 0.00 0.00 0.00 2.77
4657 5251 1.457831 GGGACGGAGGGAGTAGCAT 60.458 63.158 0.00 0.00 0.00 3.79
4706 5300 9.849166 CCCAAATATAACAACGTTTTTCATACT 57.151 29.630 2.37 0.00 0.00 2.12
4707 5301 9.843334 TCCCAAATATAACAACGTTTTTCATAC 57.157 29.630 2.37 0.00 0.00 2.39
4708 5302 9.843334 GTCCCAAATATAACAACGTTTTTCATA 57.157 29.630 2.37 1.85 0.00 2.15
4709 5303 8.361139 TGTCCCAAATATAACAACGTTTTTCAT 58.639 29.630 2.37 0.00 0.00 2.57
4710 5304 7.713750 TGTCCCAAATATAACAACGTTTTTCA 58.286 30.769 2.37 0.00 0.00 2.69
4711 5305 8.077386 TCTGTCCCAAATATAACAACGTTTTTC 58.923 33.333 2.37 0.00 0.00 2.29
4712 5306 7.942990 TCTGTCCCAAATATAACAACGTTTTT 58.057 30.769 0.00 0.31 0.00 1.94
4713 5307 7.308951 CCTCTGTCCCAAATATAACAACGTTTT 60.309 37.037 0.00 0.00 0.00 2.43
4714 5308 6.150474 CCTCTGTCCCAAATATAACAACGTTT 59.850 38.462 0.00 0.00 0.00 3.60
4715 5309 5.646360 CCTCTGTCCCAAATATAACAACGTT 59.354 40.000 0.00 0.00 0.00 3.99
4716 5310 5.183228 CCTCTGTCCCAAATATAACAACGT 58.817 41.667 0.00 0.00 0.00 3.99
4717 5311 4.574828 CCCTCTGTCCCAAATATAACAACG 59.425 45.833 0.00 0.00 0.00 4.10
4718 5312 5.751586 TCCCTCTGTCCCAAATATAACAAC 58.248 41.667 0.00 0.00 0.00 3.32
4719 5313 5.491078 ACTCCCTCTGTCCCAAATATAACAA 59.509 40.000 0.00 0.00 0.00 2.83
4720 5314 5.036916 ACTCCCTCTGTCCCAAATATAACA 58.963 41.667 0.00 0.00 0.00 2.41
4721 5315 5.632034 ACTCCCTCTGTCCCAAATATAAC 57.368 43.478 0.00 0.00 0.00 1.89
4722 5316 6.449956 ACTACTCCCTCTGTCCCAAATATAA 58.550 40.000 0.00 0.00 0.00 0.98
4723 5317 6.039415 ACTACTCCCTCTGTCCCAAATATA 57.961 41.667 0.00 0.00 0.00 0.86
4724 5318 4.897051 ACTACTCCCTCTGTCCCAAATAT 58.103 43.478 0.00 0.00 0.00 1.28
4725 5319 4.348020 ACTACTCCCTCTGTCCCAAATA 57.652 45.455 0.00 0.00 0.00 1.40
4726 5320 3.207044 ACTACTCCCTCTGTCCCAAAT 57.793 47.619 0.00 0.00 0.00 2.32
4727 5321 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
4728 5322 4.231195 TGTATACTACTCCCTCTGTCCCAA 59.769 45.833 4.17 0.00 0.00 4.12
4729 5323 3.789840 TGTATACTACTCCCTCTGTCCCA 59.210 47.826 4.17 0.00 0.00 4.37
4730 5324 4.450305 TGTATACTACTCCCTCTGTCCC 57.550 50.000 4.17 0.00 0.00 4.46
4731 5325 5.447757 ACTTGTATACTACTCCCTCTGTCC 58.552 45.833 4.17 0.00 0.00 4.02
4732 5326 6.120905 TGACTTGTATACTACTCCCTCTGTC 58.879 44.000 4.17 0.00 0.00 3.51
4733 5327 6.075949 TGACTTGTATACTACTCCCTCTGT 57.924 41.667 4.17 0.00 0.00 3.41
4734 5328 5.009210 GCTGACTTGTATACTACTCCCTCTG 59.991 48.000 4.17 0.00 0.00 3.35
4735 5329 5.134661 GCTGACTTGTATACTACTCCCTCT 58.865 45.833 4.17 0.00 0.00 3.69
4736 5330 4.278919 GGCTGACTTGTATACTACTCCCTC 59.721 50.000 4.17 0.00 0.00 4.30
4737 5331 4.216708 GGCTGACTTGTATACTACTCCCT 58.783 47.826 4.17 0.00 0.00 4.20
4738 5332 3.958798 TGGCTGACTTGTATACTACTCCC 59.041 47.826 4.17 0.00 0.00 4.30
4739 5333 5.069251 ACATGGCTGACTTGTATACTACTCC 59.931 44.000 4.17 0.00 35.87 3.85
4740 5334 6.150396 ACATGGCTGACTTGTATACTACTC 57.850 41.667 4.17 0.00 35.87 2.59
4741 5335 7.287927 ACATACATGGCTGACTTGTATACTACT 59.712 37.037 18.41 0.00 44.19 2.57
4742 5336 7.434492 ACATACATGGCTGACTTGTATACTAC 58.566 38.462 18.41 0.00 44.19 2.73
4743 5337 7.597288 ACATACATGGCTGACTTGTATACTA 57.403 36.000 18.41 0.00 44.19 1.82
4744 5338 6.485830 ACATACATGGCTGACTTGTATACT 57.514 37.500 18.41 7.20 44.19 2.12
4745 5339 8.712363 CATAACATACATGGCTGACTTGTATAC 58.288 37.037 18.41 0.00 44.19 1.47
4751 5345 4.165950 TCCCATAACATACATGGCTGACTT 59.834 41.667 0.00 0.00 41.46 3.01
4753 5347 4.085357 TCCCATAACATACATGGCTGAC 57.915 45.455 0.00 0.00 41.46 3.51
4756 5350 5.387113 TCTTTCCCATAACATACATGGCT 57.613 39.130 0.00 0.00 41.46 4.75
4837 5431 2.875296 TGGTTCCATGGAAACTCCTTG 58.125 47.619 36.15 0.00 41.98 3.61
4838 5432 3.181418 ACATGGTTCCATGGAAACTCCTT 60.181 43.478 36.15 23.83 45.68 3.36
4845 5439 2.988636 TGGAACATGGTTCCATGGAA 57.011 45.000 28.20 23.63 45.68 3.53
4852 5446 2.993220 GCGGATTTTTGGAACATGGTTC 59.007 45.455 0.00 0.54 39.30 3.62
4854 5448 1.967066 TGCGGATTTTTGGAACATGGT 59.033 42.857 0.00 0.00 39.30 3.55
4855 5449 2.739885 TGCGGATTTTTGGAACATGG 57.260 45.000 0.00 0.00 39.30 3.66
4856 5450 3.189285 GGATGCGGATTTTTGGAACATG 58.811 45.455 0.00 0.00 39.30 3.21
4857 5451 2.168313 GGGATGCGGATTTTTGGAACAT 59.832 45.455 0.00 0.00 39.30 2.71
4859 5453 1.548269 TGGGATGCGGATTTTTGGAAC 59.452 47.619 0.00 0.00 0.00 3.62
4860 5454 1.930251 TGGGATGCGGATTTTTGGAA 58.070 45.000 0.00 0.00 0.00 3.53
4863 5457 2.689471 TCTGATGGGATGCGGATTTTTG 59.311 45.455 0.00 0.00 0.00 2.44
4909 5676 4.038402 GGGCAGAGACCAATATTTCAATGG 59.962 45.833 0.00 0.00 40.16 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.