Multiple sequence alignment - TraesCS4D01G014200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G014200 chr4D 100.000 1861 0 0 593 2453 6572923 6574783 0.000000e+00 3437.0
1 TraesCS4D01G014200 chr4D 100.000 304 0 0 1 304 6572331 6572634 1.650000e-156 562.0
2 TraesCS4D01G014200 chr4B 88.098 1672 91 53 832 2453 11734806 11736419 0.000000e+00 1886.0
3 TraesCS4D01G014200 chr4A 91.094 932 53 15 824 1746 596828554 596827644 0.000000e+00 1234.0
4 TraesCS4D01G014200 chr4A 89.306 720 59 10 1746 2453 596827532 596826819 0.000000e+00 887.0
5 TraesCS4D01G014200 chr2A 81.928 83 14 1 593 674 652772471 652772553 4.380000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G014200 chr4D 6572331 6574783 2452 False 1999.5 3437 100.000 1 2453 2 chr4D.!!$F1 2452
1 TraesCS4D01G014200 chr4B 11734806 11736419 1613 False 1886.0 1886 88.098 832 2453 1 chr4B.!!$F1 1621
2 TraesCS4D01G014200 chr4A 596826819 596828554 1735 True 1060.5 1234 90.200 824 2453 2 chr4A.!!$R1 1629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.032515 TGGCGGGGTAGATGAGAAGA 60.033 55.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1986 1.421268 CTGCTCCCCATGCCTGTAATA 59.579 52.381 0.0 0.0 0.0 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.031919 TCGCCCACGAGCAAATGT 59.968 55.556 0.00 0.00 45.12 2.71
36 37 1.599518 TCGCCCACGAGCAAATGTT 60.600 52.632 0.00 0.00 45.12 2.71
37 38 1.169661 TCGCCCACGAGCAAATGTTT 61.170 50.000 0.00 0.00 45.12 2.83
38 39 1.003262 CGCCCACGAGCAAATGTTTG 61.003 55.000 1.19 1.19 43.93 2.93
39 40 0.667184 GCCCACGAGCAAATGTTTGG 60.667 55.000 7.51 0.00 38.57 3.28
47 48 3.883830 AGCAAATGTTTGGTCACAACA 57.116 38.095 4.48 0.00 44.77 3.33
48 49 3.520569 AGCAAATGTTTGGTCACAACAC 58.479 40.909 4.48 0.00 44.77 3.32
49 50 2.281234 GCAAATGTTTGGTCACAACACG 59.719 45.455 7.51 0.00 38.57 4.49
50 51 3.763902 CAAATGTTTGGTCACAACACGA 58.236 40.909 0.00 0.00 36.06 4.35
51 52 4.358851 CAAATGTTTGGTCACAACACGAT 58.641 39.130 0.00 0.00 36.06 3.73
52 53 3.896648 ATGTTTGGTCACAACACGATC 57.103 42.857 0.00 0.00 36.06 3.69
53 54 1.595328 TGTTTGGTCACAACACGATCG 59.405 47.619 14.88 14.88 36.06 3.69
54 55 1.595794 GTTTGGTCACAACACGATCGT 59.404 47.619 16.60 16.60 36.06 3.73
58 59 1.214367 GTCACAACACGATCGTGGTT 58.786 50.000 41.65 31.17 44.62 3.67
59 60 1.070843 GTCACAACACGATCGTGGTTG 60.071 52.381 41.65 37.89 44.62 3.77
60 61 0.234625 CACAACACGATCGTGGTTGG 59.765 55.000 41.65 30.58 44.62 3.77
61 62 0.105224 ACAACACGATCGTGGTTGGA 59.895 50.000 41.65 0.00 44.62 3.53
62 63 1.222300 CAACACGATCGTGGTTGGAA 58.778 50.000 41.65 0.00 44.62 3.53
63 64 1.070175 CAACACGATCGTGGTTGGAAC 60.070 52.381 41.65 0.00 44.62 3.62
64 65 1.473610 AACACGATCGTGGTTGGAACA 60.474 47.619 41.65 0.00 44.62 3.18
65 66 0.511221 CACGATCGTGGTTGGAACAC 59.489 55.000 35.09 0.00 42.00 3.32
66 67 0.601841 ACGATCGTGGTTGGAACACC 60.602 55.000 22.06 0.00 39.29 4.16
67 68 0.601576 CGATCGTGGTTGGAACACCA 60.602 55.000 7.03 0.00 39.29 4.17
68 69 1.600023 GATCGTGGTTGGAACACCAA 58.400 50.000 0.00 0.00 40.15 3.67
78 79 4.822036 TTGGAACACCAACTAAACGATG 57.178 40.909 0.00 0.00 39.29 3.84
79 80 3.142951 TGGAACACCAACTAAACGATGG 58.857 45.455 0.00 0.00 41.11 3.51
80 81 2.095415 GGAACACCAACTAAACGATGGC 60.095 50.000 0.00 0.00 39.05 4.40
81 82 2.561478 ACACCAACTAAACGATGGCT 57.439 45.000 0.00 0.00 39.05 4.75
82 83 2.423577 ACACCAACTAAACGATGGCTC 58.576 47.619 0.00 0.00 39.05 4.70
91 92 4.933064 CGATGGCTCGCGGTCCTC 62.933 72.222 6.13 0.08 38.20 3.71
92 93 3.838271 GATGGCTCGCGGTCCTCA 61.838 66.667 6.13 0.00 0.00 3.86
93 94 3.157217 GATGGCTCGCGGTCCTCAT 62.157 63.158 6.13 3.63 0.00 2.90
94 95 3.451556 ATGGCTCGCGGTCCTCATG 62.452 63.158 6.13 0.00 0.00 3.07
95 96 4.899239 GGCTCGCGGTCCTCATGG 62.899 72.222 6.13 0.00 0.00 3.66
97 98 4.899239 CTCGCGGTCCTCATGGCC 62.899 72.222 6.13 0.00 0.00 5.36
100 101 3.785859 GCGGTCCTCATGGCCAGA 61.786 66.667 13.05 8.18 32.26 3.86
101 102 2.503061 CGGTCCTCATGGCCAGAG 59.497 66.667 13.05 17.31 32.26 3.35
102 103 2.191641 GGTCCTCATGGCCAGAGC 59.808 66.667 20.62 14.34 38.76 4.09
103 104 2.673200 GGTCCTCATGGCCAGAGCA 61.673 63.158 20.62 8.70 42.56 4.26
104 105 1.451028 GTCCTCATGGCCAGAGCAC 60.451 63.158 20.62 15.35 42.56 4.40
105 106 1.919816 TCCTCATGGCCAGAGCACA 60.920 57.895 20.62 8.70 42.56 4.57
106 107 1.001764 CCTCATGGCCAGAGCACAA 60.002 57.895 20.62 0.00 42.56 3.33
107 108 1.310933 CCTCATGGCCAGAGCACAAC 61.311 60.000 20.62 0.00 42.56 3.32
108 109 1.303561 TCATGGCCAGAGCACAACC 60.304 57.895 13.05 0.00 42.56 3.77
109 110 1.604308 CATGGCCAGAGCACAACCA 60.604 57.895 13.05 0.00 42.56 3.67
110 111 1.604593 ATGGCCAGAGCACAACCAC 60.605 57.895 13.05 0.00 42.56 4.16
111 112 2.985847 GGCCAGAGCACAACCACC 60.986 66.667 0.00 0.00 42.56 4.61
112 113 3.357079 GCCAGAGCACAACCACCG 61.357 66.667 0.00 0.00 39.53 4.94
113 114 3.357079 CCAGAGCACAACCACCGC 61.357 66.667 0.00 0.00 0.00 5.68
114 115 2.281070 CAGAGCACAACCACCGCT 60.281 61.111 0.00 0.00 39.12 5.52
116 117 3.414700 GAGCACAACCACCGCTCG 61.415 66.667 0.00 0.00 42.42 5.03
117 118 4.235762 AGCACAACCACCGCTCGT 62.236 61.111 0.00 0.00 0.00 4.18
118 119 4.012895 GCACAACCACCGCTCGTG 62.013 66.667 0.00 0.00 42.62 4.35
119 120 4.012895 CACAACCACCGCTCGTGC 62.013 66.667 0.00 0.00 41.53 5.34
143 144 3.209091 GCACTGTAGCCCTAGGAGA 57.791 57.895 11.48 0.00 0.00 3.71
144 145 0.747852 GCACTGTAGCCCTAGGAGAC 59.252 60.000 11.48 5.53 0.00 3.36
145 146 1.960471 GCACTGTAGCCCTAGGAGACA 60.960 57.143 11.48 10.06 0.00 3.41
146 147 2.457598 CACTGTAGCCCTAGGAGACAA 58.542 52.381 11.48 0.00 0.00 3.18
147 148 2.166664 CACTGTAGCCCTAGGAGACAAC 59.833 54.545 11.48 1.63 0.00 3.32
148 149 2.225293 ACTGTAGCCCTAGGAGACAACA 60.225 50.000 11.48 6.31 0.00 3.33
149 150 2.832129 CTGTAGCCCTAGGAGACAACAA 59.168 50.000 11.48 0.00 0.00 2.83
150 151 2.565834 TGTAGCCCTAGGAGACAACAAC 59.434 50.000 11.48 0.00 0.00 3.32
151 152 0.984995 AGCCCTAGGAGACAACAACC 59.015 55.000 11.48 0.00 0.00 3.77
152 153 0.035343 GCCCTAGGAGACAACAACCC 60.035 60.000 11.48 0.00 0.00 4.11
153 154 1.358152 CCCTAGGAGACAACAACCCA 58.642 55.000 11.48 0.00 0.00 4.51
154 155 1.279271 CCCTAGGAGACAACAACCCAG 59.721 57.143 11.48 0.00 0.00 4.45
155 156 1.339151 CCTAGGAGACAACAACCCAGC 60.339 57.143 1.05 0.00 0.00 4.85
156 157 0.320374 TAGGAGACAACAACCCAGCG 59.680 55.000 0.00 0.00 0.00 5.18
157 158 1.227853 GGAGACAACAACCCAGCGT 60.228 57.895 0.00 0.00 0.00 5.07
158 159 1.228657 GGAGACAACAACCCAGCGTC 61.229 60.000 0.00 0.00 0.00 5.19
159 160 1.557443 GAGACAACAACCCAGCGTCG 61.557 60.000 0.00 0.00 0.00 5.12
160 161 3.236618 GACAACAACCCAGCGTCGC 62.237 63.158 9.80 9.80 0.00 5.19
161 162 2.972505 CAACAACCCAGCGTCGCT 60.973 61.111 15.47 15.47 40.77 4.93
173 174 3.695606 GTCGCTGCTCCACCAGGA 61.696 66.667 0.00 0.00 43.21 3.86
174 175 2.685017 TCGCTGCTCCACCAGGAT 60.685 61.111 0.00 0.00 44.70 3.24
175 176 2.513204 CGCTGCTCCACCAGGATG 60.513 66.667 0.00 0.00 44.70 3.51
176 177 2.993008 GCTGCTCCACCAGGATGA 59.007 61.111 0.00 0.00 44.70 2.92
177 178 1.300963 GCTGCTCCACCAGGATGAA 59.699 57.895 0.00 0.00 44.70 2.57
178 179 0.747283 GCTGCTCCACCAGGATGAAG 60.747 60.000 0.00 0.00 44.70 3.02
179 180 0.907486 CTGCTCCACCAGGATGAAGA 59.093 55.000 0.00 0.00 44.70 2.87
180 181 0.615331 TGCTCCACCAGGATGAAGAC 59.385 55.000 0.00 0.00 44.70 3.01
181 182 0.107459 GCTCCACCAGGATGAAGACC 60.107 60.000 0.00 0.00 44.70 3.85
182 183 0.543749 CTCCACCAGGATGAAGACCC 59.456 60.000 0.00 0.00 44.70 4.46
183 184 0.914417 TCCACCAGGATGAAGACCCC 60.914 60.000 0.00 0.00 39.61 4.95
184 185 1.207488 CCACCAGGATGAAGACCCCA 61.207 60.000 0.00 0.00 39.69 4.96
185 186 0.921896 CACCAGGATGAAGACCCCAT 59.078 55.000 0.00 0.00 39.69 4.00
186 187 2.126882 CACCAGGATGAAGACCCCATA 58.873 52.381 0.00 0.00 39.69 2.74
187 188 2.105477 CACCAGGATGAAGACCCCATAG 59.895 54.545 0.00 0.00 39.69 2.23
188 189 2.293856 ACCAGGATGAAGACCCCATAGT 60.294 50.000 0.00 0.00 39.69 2.12
189 190 2.370189 CCAGGATGAAGACCCCATAGTC 59.630 54.545 0.00 0.00 39.69 2.59
190 191 2.370189 CAGGATGAAGACCCCATAGTCC 59.630 54.545 0.00 0.00 39.69 3.85
191 192 2.251338 AGGATGAAGACCCCATAGTCCT 59.749 50.000 0.00 0.00 37.49 3.85
192 193 3.049344 GGATGAAGACCCCATAGTCCTT 58.951 50.000 0.00 0.00 37.49 3.36
193 194 3.459969 GGATGAAGACCCCATAGTCCTTT 59.540 47.826 0.00 0.00 37.49 3.11
194 195 4.445019 GGATGAAGACCCCATAGTCCTTTC 60.445 50.000 0.00 0.00 37.49 2.62
195 196 2.500098 TGAAGACCCCATAGTCCTTTCG 59.500 50.000 0.00 0.00 37.49 3.46
196 197 1.497161 AGACCCCATAGTCCTTTCGG 58.503 55.000 0.00 0.00 37.49 4.30
197 198 1.201424 GACCCCATAGTCCTTTCGGT 58.799 55.000 0.00 0.00 0.00 4.69
198 199 0.909623 ACCCCATAGTCCTTTCGGTG 59.090 55.000 0.00 0.00 0.00 4.94
199 200 0.463833 CCCCATAGTCCTTTCGGTGC 60.464 60.000 0.00 0.00 0.00 5.01
200 201 0.541863 CCCATAGTCCTTTCGGTGCT 59.458 55.000 0.00 0.00 0.00 4.40
201 202 1.656652 CCATAGTCCTTTCGGTGCTG 58.343 55.000 0.00 0.00 0.00 4.41
202 203 1.207089 CCATAGTCCTTTCGGTGCTGA 59.793 52.381 0.00 0.00 0.00 4.26
203 204 2.158900 CCATAGTCCTTTCGGTGCTGAT 60.159 50.000 0.00 0.00 0.00 2.90
204 205 2.961526 TAGTCCTTTCGGTGCTGATC 57.038 50.000 0.00 0.00 0.00 2.92
205 206 0.250513 AGTCCTTTCGGTGCTGATCC 59.749 55.000 0.00 0.00 0.00 3.36
206 207 0.036388 GTCCTTTCGGTGCTGATCCA 60.036 55.000 0.00 0.00 0.00 3.41
207 208 0.036388 TCCTTTCGGTGCTGATCCAC 60.036 55.000 0.00 0.00 35.00 4.02
212 213 2.662596 GGTGCTGATCCACCGTCA 59.337 61.111 5.51 0.00 45.13 4.35
213 214 1.741770 GGTGCTGATCCACCGTCAC 60.742 63.158 5.51 0.00 45.13 3.67
214 215 1.741770 GTGCTGATCCACCGTCACC 60.742 63.158 0.00 0.00 0.00 4.02
215 216 1.913262 TGCTGATCCACCGTCACCT 60.913 57.895 0.00 0.00 0.00 4.00
216 217 1.153549 GCTGATCCACCGTCACCTC 60.154 63.158 0.00 0.00 0.00 3.85
217 218 1.139734 CTGATCCACCGTCACCTCG 59.860 63.158 0.00 0.00 0.00 4.63
230 231 4.168291 CCTCGGGAAGGGCAGAGC 62.168 72.222 0.00 0.00 42.03 4.09
231 232 4.521062 CTCGGGAAGGGCAGAGCG 62.521 72.222 0.00 0.00 0.00 5.03
234 235 4.785453 GGGAAGGGCAGAGCGGTG 62.785 72.222 0.00 0.00 0.00 4.94
235 236 4.785453 GGAAGGGCAGAGCGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
246 247 4.910585 GCGGTGGCGGGGTAGATG 62.911 72.222 0.00 0.00 0.00 2.90
247 248 3.151710 CGGTGGCGGGGTAGATGA 61.152 66.667 0.00 0.00 0.00 2.92
248 249 2.822399 GGTGGCGGGGTAGATGAG 59.178 66.667 0.00 0.00 0.00 2.90
249 250 1.760875 GGTGGCGGGGTAGATGAGA 60.761 63.158 0.00 0.00 0.00 3.27
250 251 1.335132 GGTGGCGGGGTAGATGAGAA 61.335 60.000 0.00 0.00 0.00 2.87
251 252 0.105039 GTGGCGGGGTAGATGAGAAG 59.895 60.000 0.00 0.00 0.00 2.85
252 253 0.032515 TGGCGGGGTAGATGAGAAGA 60.033 55.000 0.00 0.00 0.00 2.87
253 254 0.676736 GGCGGGGTAGATGAGAAGAG 59.323 60.000 0.00 0.00 0.00 2.85
254 255 1.693627 GCGGGGTAGATGAGAAGAGA 58.306 55.000 0.00 0.00 0.00 3.10
255 256 2.243810 GCGGGGTAGATGAGAAGAGAT 58.756 52.381 0.00 0.00 0.00 2.75
256 257 2.630580 GCGGGGTAGATGAGAAGAGATT 59.369 50.000 0.00 0.00 0.00 2.40
257 258 3.827302 GCGGGGTAGATGAGAAGAGATTA 59.173 47.826 0.00 0.00 0.00 1.75
258 259 4.321378 GCGGGGTAGATGAGAAGAGATTAC 60.321 50.000 0.00 0.00 0.00 1.89
259 260 4.218852 CGGGGTAGATGAGAAGAGATTACC 59.781 50.000 0.00 0.00 0.00 2.85
260 261 5.148502 GGGGTAGATGAGAAGAGATTACCA 58.851 45.833 0.00 0.00 32.64 3.25
261 262 5.011227 GGGGTAGATGAGAAGAGATTACCAC 59.989 48.000 0.00 0.00 32.64 4.16
262 263 5.598830 GGGTAGATGAGAAGAGATTACCACA 59.401 44.000 0.00 0.00 32.64 4.17
263 264 6.461788 GGGTAGATGAGAAGAGATTACCACAC 60.462 46.154 0.00 0.00 32.64 3.82
264 265 5.255710 AGATGAGAAGAGATTACCACACG 57.744 43.478 0.00 0.00 0.00 4.49
265 266 4.707448 AGATGAGAAGAGATTACCACACGT 59.293 41.667 0.00 0.00 0.00 4.49
266 267 4.866508 TGAGAAGAGATTACCACACGTT 57.133 40.909 0.00 0.00 0.00 3.99
267 268 4.556233 TGAGAAGAGATTACCACACGTTG 58.444 43.478 0.00 0.00 0.00 4.10
280 281 1.983224 ACGTTGGGTGATGGAGAGG 59.017 57.895 0.00 0.00 0.00 3.69
281 282 1.450312 CGTTGGGTGATGGAGAGGC 60.450 63.158 0.00 0.00 0.00 4.70
282 283 1.077429 GTTGGGTGATGGAGAGGCC 60.077 63.158 0.00 0.00 37.10 5.19
283 284 1.229951 TTGGGTGATGGAGAGGCCT 60.230 57.895 3.86 3.86 37.63 5.19
284 285 0.846427 TTGGGTGATGGAGAGGCCTT 60.846 55.000 6.77 0.00 37.63 4.35
285 286 1.274703 TGGGTGATGGAGAGGCCTTC 61.275 60.000 6.77 6.55 40.38 3.46
286 287 1.529309 GGTGATGGAGAGGCCTTCC 59.471 63.158 20.89 20.89 39.48 3.46
287 288 1.529309 GTGATGGAGAGGCCTTCCC 59.471 63.158 23.30 19.70 39.48 3.97
288 289 1.082766 TGATGGAGAGGCCTTCCCA 59.917 57.895 23.92 23.92 39.48 4.37
289 290 0.984961 TGATGGAGAGGCCTTCCCAG 60.985 60.000 25.15 0.00 39.48 4.45
290 291 0.985490 GATGGAGAGGCCTTCCCAGT 60.985 60.000 25.15 16.29 35.35 4.00
291 292 0.985490 ATGGAGAGGCCTTCCCAGTC 60.985 60.000 25.15 5.61 37.63 3.51
292 293 2.726351 GGAGAGGCCTTCCCAGTCG 61.726 68.421 6.77 0.00 35.39 4.18
293 294 3.378399 GAGAGGCCTTCCCAGTCGC 62.378 68.421 6.77 0.00 35.39 5.19
294 295 4.821589 GAGGCCTTCCCAGTCGCG 62.822 72.222 6.77 0.00 35.39 5.87
296 297 4.162690 GGCCTTCCCAGTCGCGAT 62.163 66.667 14.06 0.00 0.00 4.58
297 298 2.892425 GCCTTCCCAGTCGCGATG 60.892 66.667 14.06 11.72 0.00 3.84
298 299 2.892640 CCTTCCCAGTCGCGATGA 59.107 61.111 14.06 4.13 0.00 2.92
299 300 1.227089 CCTTCCCAGTCGCGATGAG 60.227 63.158 14.06 5.15 0.00 2.90
300 301 1.227089 CTTCCCAGTCGCGATGAGG 60.227 63.158 14.06 14.68 0.00 3.86
301 302 2.635229 CTTCCCAGTCGCGATGAGGG 62.635 65.000 27.70 27.70 40.98 4.30
302 303 3.461773 CCCAGTCGCGATGAGGGT 61.462 66.667 26.19 2.56 34.75 4.34
303 304 2.579201 CCAGTCGCGATGAGGGTT 59.421 61.111 14.06 0.00 0.00 4.11
611 612 1.594331 CTAAGGCCCCGCTTGATAAC 58.406 55.000 0.00 0.00 0.00 1.89
612 613 0.179067 TAAGGCCCCGCTTGATAACG 60.179 55.000 0.00 0.00 0.00 3.18
621 622 4.191662 CCGCTTGATAACGGTGTATTTC 57.808 45.455 0.00 0.00 44.46 2.17
622 623 3.869246 CCGCTTGATAACGGTGTATTTCT 59.131 43.478 0.00 0.00 44.46 2.52
623 624 5.045215 CCGCTTGATAACGGTGTATTTCTA 58.955 41.667 0.00 0.00 44.46 2.10
624 625 5.694910 CCGCTTGATAACGGTGTATTTCTAT 59.305 40.000 0.00 0.00 44.46 1.98
625 626 6.864685 CCGCTTGATAACGGTGTATTTCTATA 59.135 38.462 0.00 0.00 44.46 1.31
626 627 7.148853 CCGCTTGATAACGGTGTATTTCTATAC 60.149 40.741 0.00 0.00 44.46 1.47
627 628 7.380333 CGCTTGATAACGGTGTATTTCTATACA 59.620 37.037 0.00 0.00 43.28 2.29
666 667 3.053831 GTGTATAACACTGGCCACACT 57.946 47.619 0.00 0.00 45.27 3.55
667 668 3.408634 GTGTATAACACTGGCCACACTT 58.591 45.455 0.00 0.00 45.27 3.16
668 669 3.188460 GTGTATAACACTGGCCACACTTG 59.812 47.826 0.00 0.00 45.27 3.16
669 670 2.949177 ATAACACTGGCCACACTTGA 57.051 45.000 0.00 0.00 0.00 3.02
670 671 2.949177 TAACACTGGCCACACTTGAT 57.051 45.000 0.00 0.00 0.00 2.57
671 672 2.071778 AACACTGGCCACACTTGATT 57.928 45.000 0.00 0.00 0.00 2.57
672 673 2.071778 ACACTGGCCACACTTGATTT 57.928 45.000 0.00 0.00 0.00 2.17
673 674 2.387757 ACACTGGCCACACTTGATTTT 58.612 42.857 0.00 0.00 0.00 1.82
674 675 2.362077 ACACTGGCCACACTTGATTTTC 59.638 45.455 0.00 0.00 0.00 2.29
675 676 2.361757 CACTGGCCACACTTGATTTTCA 59.638 45.455 0.00 0.00 0.00 2.69
676 677 3.006110 CACTGGCCACACTTGATTTTCAT 59.994 43.478 0.00 0.00 0.00 2.57
677 678 3.642848 ACTGGCCACACTTGATTTTCATT 59.357 39.130 0.00 0.00 0.00 2.57
678 679 4.101430 ACTGGCCACACTTGATTTTCATTT 59.899 37.500 0.00 0.00 0.00 2.32
679 680 4.378774 TGGCCACACTTGATTTTCATTTG 58.621 39.130 0.00 0.00 0.00 2.32
680 681 4.100653 TGGCCACACTTGATTTTCATTTGA 59.899 37.500 0.00 0.00 0.00 2.69
681 682 5.055812 GGCCACACTTGATTTTCATTTGAA 58.944 37.500 0.00 0.00 0.00 2.69
682 683 5.526846 GGCCACACTTGATTTTCATTTGAAA 59.473 36.000 0.00 1.66 41.77 2.69
694 695 7.749539 TTTTCATTTGAAAAGAAGAACGACC 57.250 32.000 13.08 0.00 45.76 4.79
695 696 6.693315 TTCATTTGAAAAGAAGAACGACCT 57.307 33.333 0.00 0.00 0.00 3.85
696 697 7.795482 TTCATTTGAAAAGAAGAACGACCTA 57.205 32.000 0.00 0.00 0.00 3.08
697 698 7.979444 TCATTTGAAAAGAAGAACGACCTAT 57.021 32.000 0.00 0.00 0.00 2.57
698 699 7.806690 TCATTTGAAAAGAAGAACGACCTATG 58.193 34.615 0.00 0.00 0.00 2.23
699 700 7.659799 TCATTTGAAAAGAAGAACGACCTATGA 59.340 33.333 0.00 0.00 0.00 2.15
700 701 7.795482 TTTGAAAAGAAGAACGACCTATGAA 57.205 32.000 0.00 0.00 0.00 2.57
701 702 7.421530 TTGAAAAGAAGAACGACCTATGAAG 57.578 36.000 0.00 0.00 0.00 3.02
722 723 9.990868 ATGAAGGTCTATAAATTTTACAAGGGT 57.009 29.630 0.00 0.00 0.00 4.34
740 741 2.538449 GGGTATATGACGCTGTGAAACG 59.462 50.000 0.00 0.00 42.39 3.60
741 742 2.034001 GGTATATGACGCTGTGAAACGC 60.034 50.000 0.00 0.00 42.39 4.84
742 743 1.006832 ATATGACGCTGTGAAACGCC 58.993 50.000 0.00 0.00 42.39 5.68
743 744 0.319986 TATGACGCTGTGAAACGCCA 60.320 50.000 0.00 0.00 42.39 5.69
744 745 1.163420 ATGACGCTGTGAAACGCCAA 61.163 50.000 0.00 0.00 42.39 4.52
745 746 1.163420 TGACGCTGTGAAACGCCAAT 61.163 50.000 0.00 0.00 42.39 3.16
746 747 0.452784 GACGCTGTGAAACGCCAATC 60.453 55.000 0.00 0.00 42.39 2.67
747 748 1.154225 CGCTGTGAAACGCCAATCC 60.154 57.895 0.00 0.00 42.39 3.01
748 749 1.851021 CGCTGTGAAACGCCAATCCA 61.851 55.000 0.00 0.00 42.39 3.41
749 750 0.313672 GCTGTGAAACGCCAATCCAA 59.686 50.000 0.00 0.00 42.39 3.53
750 751 1.067635 GCTGTGAAACGCCAATCCAAT 60.068 47.619 0.00 0.00 42.39 3.16
751 752 2.867429 CTGTGAAACGCCAATCCAATC 58.133 47.619 0.00 0.00 42.39 2.67
752 753 2.228582 CTGTGAAACGCCAATCCAATCA 59.771 45.455 0.00 0.00 42.39 2.57
753 754 2.228582 TGTGAAACGCCAATCCAATCAG 59.771 45.455 0.00 0.00 42.39 2.90
754 755 1.818060 TGAAACGCCAATCCAATCAGG 59.182 47.619 0.00 0.00 39.47 3.86
755 756 0.532115 AAACGCCAATCCAATCAGGC 59.468 50.000 0.00 0.00 43.61 4.85
756 757 1.322538 AACGCCAATCCAATCAGGCC 61.323 55.000 0.00 0.00 44.18 5.19
757 758 1.454479 CGCCAATCCAATCAGGCCT 60.454 57.895 0.00 0.00 44.18 5.19
758 759 0.179020 CGCCAATCCAATCAGGCCTA 60.179 55.000 3.98 0.00 44.18 3.93
759 760 1.750332 CGCCAATCCAATCAGGCCTAA 60.750 52.381 3.98 0.00 44.18 2.69
760 761 1.959282 GCCAATCCAATCAGGCCTAAG 59.041 52.381 3.98 0.00 41.25 2.18
761 762 2.687914 GCCAATCCAATCAGGCCTAAGT 60.688 50.000 3.98 0.00 41.25 2.24
762 763 3.217626 CCAATCCAATCAGGCCTAAGTC 58.782 50.000 3.98 0.00 37.29 3.01
763 764 3.117738 CCAATCCAATCAGGCCTAAGTCT 60.118 47.826 3.98 0.00 37.29 3.24
764 765 4.133078 CAATCCAATCAGGCCTAAGTCTC 58.867 47.826 3.98 0.00 37.29 3.36
765 766 3.121929 TCCAATCAGGCCTAAGTCTCT 57.878 47.619 3.98 0.00 37.29 3.10
766 767 2.768527 TCCAATCAGGCCTAAGTCTCTG 59.231 50.000 3.98 0.00 37.29 3.35
767 768 2.768527 CCAATCAGGCCTAAGTCTCTGA 59.231 50.000 3.98 0.00 40.04 3.27
768 769 3.390639 CCAATCAGGCCTAAGTCTCTGAT 59.609 47.826 3.98 0.00 45.53 2.90
769 770 4.502950 CCAATCAGGCCTAAGTCTCTGATC 60.503 50.000 3.98 0.00 43.61 2.92
770 771 3.388552 TCAGGCCTAAGTCTCTGATCA 57.611 47.619 3.98 0.00 32.10 2.92
771 772 3.295093 TCAGGCCTAAGTCTCTGATCAG 58.705 50.000 17.07 17.07 32.10 2.90
772 773 3.053320 TCAGGCCTAAGTCTCTGATCAGA 60.053 47.826 23.75 23.75 32.10 3.27
773 774 3.896888 CAGGCCTAAGTCTCTGATCAGAT 59.103 47.826 25.30 13.32 36.76 2.90
774 775 5.076182 CAGGCCTAAGTCTCTGATCAGATA 58.924 45.833 25.30 16.01 36.76 1.98
775 776 5.183713 CAGGCCTAAGTCTCTGATCAGATAG 59.816 48.000 25.30 21.21 36.76 2.08
776 777 4.462483 GGCCTAAGTCTCTGATCAGATAGG 59.538 50.000 29.99 29.99 38.54 2.57
777 778 4.082245 GCCTAAGTCTCTGATCAGATAGGC 60.082 50.000 36.44 36.44 46.48 3.93
778 779 5.324409 CCTAAGTCTCTGATCAGATAGGCT 58.676 45.833 26.25 20.07 36.76 4.58
779 780 6.480763 CCTAAGTCTCTGATCAGATAGGCTA 58.519 44.000 26.25 14.92 36.76 3.93
780 781 7.118723 CCTAAGTCTCTGATCAGATAGGCTAT 58.881 42.308 26.25 6.76 36.76 2.97
781 782 7.615365 CCTAAGTCTCTGATCAGATAGGCTATT 59.385 40.741 26.25 16.90 36.76 1.73
782 783 7.466746 AAGTCTCTGATCAGATAGGCTATTC 57.533 40.000 25.30 5.36 36.76 1.75
783 784 6.551085 AGTCTCTGATCAGATAGGCTATTCA 58.449 40.000 25.30 7.40 36.76 2.57
784 785 6.434028 AGTCTCTGATCAGATAGGCTATTCAC 59.566 42.308 25.30 7.54 36.76 3.18
785 786 6.434028 GTCTCTGATCAGATAGGCTATTCACT 59.566 42.308 25.30 0.00 36.76 3.41
786 787 6.658816 TCTCTGATCAGATAGGCTATTCACTC 59.341 42.308 25.30 5.07 36.76 3.51
787 788 6.310149 TCTGATCAGATAGGCTATTCACTCA 58.690 40.000 21.67 8.99 31.41 3.41
788 789 6.952938 TCTGATCAGATAGGCTATTCACTCAT 59.047 38.462 21.67 0.00 31.41 2.90
789 790 7.122501 TCTGATCAGATAGGCTATTCACTCATC 59.877 40.741 21.67 3.81 31.41 2.92
790 791 6.723052 TGATCAGATAGGCTATTCACTCATCA 59.277 38.462 8.71 6.35 0.00 3.07
791 792 6.338214 TCAGATAGGCTATTCACTCATCAC 57.662 41.667 8.71 0.00 0.00 3.06
792 793 6.073981 TCAGATAGGCTATTCACTCATCACT 58.926 40.000 8.71 0.00 0.00 3.41
793 794 6.208402 TCAGATAGGCTATTCACTCATCACTC 59.792 42.308 8.71 0.00 0.00 3.51
794 795 6.015603 CAGATAGGCTATTCACTCATCACTCA 60.016 42.308 8.71 0.00 0.00 3.41
795 796 4.399004 AGGCTATTCACTCATCACTCAC 57.601 45.455 0.00 0.00 0.00 3.51
796 797 3.771479 AGGCTATTCACTCATCACTCACA 59.229 43.478 0.00 0.00 0.00 3.58
797 798 3.868077 GGCTATTCACTCATCACTCACAC 59.132 47.826 0.00 0.00 0.00 3.82
798 799 3.868077 GCTATTCACTCATCACTCACACC 59.132 47.826 0.00 0.00 0.00 4.16
799 800 4.382470 GCTATTCACTCATCACTCACACCT 60.382 45.833 0.00 0.00 0.00 4.00
800 801 3.667497 TTCACTCATCACTCACACCTC 57.333 47.619 0.00 0.00 0.00 3.85
801 802 1.895798 TCACTCATCACTCACACCTCC 59.104 52.381 0.00 0.00 0.00 4.30
802 803 1.620323 CACTCATCACTCACACCTCCA 59.380 52.381 0.00 0.00 0.00 3.86
803 804 1.620819 ACTCATCACTCACACCTCCAC 59.379 52.381 0.00 0.00 0.00 4.02
804 805 1.620323 CTCATCACTCACACCTCCACA 59.380 52.381 0.00 0.00 0.00 4.17
805 806 2.037641 CTCATCACTCACACCTCCACAA 59.962 50.000 0.00 0.00 0.00 3.33
806 807 2.639347 TCATCACTCACACCTCCACAAT 59.361 45.455 0.00 0.00 0.00 2.71
807 808 2.549064 TCACTCACACCTCCACAATG 57.451 50.000 0.00 0.00 0.00 2.82
808 809 1.072173 TCACTCACACCTCCACAATGG 59.928 52.381 0.00 0.00 39.43 3.16
809 810 1.072173 CACTCACACCTCCACAATGGA 59.928 52.381 0.00 0.00 45.98 3.41
821 822 5.957842 TCCACAATGGAGTAACATGAAAC 57.042 39.130 0.00 0.00 42.67 2.78
822 823 4.764823 TCCACAATGGAGTAACATGAAACC 59.235 41.667 0.00 0.00 42.67 3.27
827 828 2.027561 TGGAGTAACATGAAACCTCCCG 60.028 50.000 16.91 0.00 40.82 5.14
845 846 2.123854 TGAGGCGGATCTAGCGGT 60.124 61.111 7.43 0.00 35.00 5.68
860 861 3.644966 AGCGGTTAAGAATGGATCCAA 57.355 42.857 20.67 0.00 0.00 3.53
878 879 2.805099 CCAAGAAGATAATGAGCGGCTC 59.195 50.000 22.78 22.78 0.00 4.70
886 887 1.858091 AATGAGCGGCTCTGATTACG 58.142 50.000 28.42 0.00 26.45 3.18
910 911 1.585002 GCAAAGCGCGACAACACAA 60.585 52.632 12.10 0.00 0.00 3.33
913 914 0.522495 AAAGCGCGACAACACAACAC 60.522 50.000 12.10 0.00 0.00 3.32
1069 1087 2.847234 TCCACCTCGGCCACAACT 60.847 61.111 2.24 0.00 33.14 3.16
1078 1096 4.947147 GCCACAACTCCGCCACCA 62.947 66.667 0.00 0.00 0.00 4.17
1079 1097 2.669569 CCACAACTCCGCCACCAG 60.670 66.667 0.00 0.00 0.00 4.00
1080 1098 3.357079 CACAACTCCGCCACCAGC 61.357 66.667 0.00 0.00 38.52 4.85
1083 1101 2.606519 AACTCCGCCACCAGCCTA 60.607 61.111 0.00 0.00 38.78 3.93
1084 1102 2.955881 AACTCCGCCACCAGCCTAC 61.956 63.158 0.00 0.00 38.78 3.18
1085 1103 4.162690 CTCCGCCACCAGCCTACC 62.163 72.222 0.00 0.00 38.78 3.18
1462 1480 2.273912 AACGACTGACCGACCCCTC 61.274 63.158 0.00 0.00 0.00 4.30
1463 1481 3.450115 CGACTGACCGACCCCTCC 61.450 72.222 0.00 0.00 0.00 4.30
1464 1482 3.075641 GACTGACCGACCCCTCCC 61.076 72.222 0.00 0.00 0.00 4.30
1465 1483 4.716977 ACTGACCGACCCCTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
1466 1484 4.400251 CTGACCGACCCCTCCCCT 62.400 72.222 0.00 0.00 0.00 4.79
1471 1489 2.283809 CGACCCCTCCCCTCATCT 59.716 66.667 0.00 0.00 0.00 2.90
1472 1490 1.383248 CGACCCCTCCCCTCATCTT 60.383 63.158 0.00 0.00 0.00 2.40
1474 1492 1.004891 ACCCCTCCCCTCATCTTCC 59.995 63.158 0.00 0.00 0.00 3.46
1567 1596 3.770933 ACCAGCCATTGCAATAAGATGTT 59.229 39.130 12.53 1.27 41.13 2.71
1568 1597 4.223477 ACCAGCCATTGCAATAAGATGTTT 59.777 37.500 12.53 2.54 41.13 2.83
1569 1598 4.807304 CCAGCCATTGCAATAAGATGTTTC 59.193 41.667 12.53 0.00 41.13 2.78
1599 1630 4.336433 TGCCTAATAATCAGTTGCTTCAGC 59.664 41.667 0.00 0.00 42.50 4.26
1618 1649 2.555757 AGCTGTTGCCTGAACAATCTTC 59.444 45.455 0.00 0.00 44.14 2.87
1619 1650 2.294233 GCTGTTGCCTGAACAATCTTCA 59.706 45.455 0.00 0.00 44.14 3.02
1651 1682 4.202131 TGCTTGTCATGCTTGAAACATTGA 60.202 37.500 11.58 0.00 32.48 2.57
1700 1757 4.685169 TCGAAAGATTTCATGTGAAGGC 57.315 40.909 6.16 0.00 37.01 4.35
1701 1758 3.125146 TCGAAAGATTTCATGTGAAGGCG 59.875 43.478 6.16 0.00 37.01 5.52
1702 1759 3.125146 CGAAAGATTTCATGTGAAGGCGA 59.875 43.478 6.16 0.00 37.01 5.54
1728 1786 4.952262 TCGAAAGATTTGATGAGCAAGG 57.048 40.909 0.00 0.00 34.32 3.61
1782 1952 3.809279 TGATGTTCTAACACACAGCACAG 59.191 43.478 0.00 0.00 42.51 3.66
1790 1960 1.484653 ACACACAGCACAGGTTCAGTA 59.515 47.619 0.00 0.00 0.00 2.74
1791 1961 1.867233 CACACAGCACAGGTTCAGTAC 59.133 52.381 0.00 0.00 0.00 2.73
1793 1963 2.170607 ACACAGCACAGGTTCAGTACTT 59.829 45.455 0.00 0.00 0.00 2.24
1794 1964 2.545526 CACAGCACAGGTTCAGTACTTG 59.454 50.000 0.00 0.00 39.59 3.16
1816 1986 4.591924 TGAGTCTCAGACATGCATATCCAT 59.408 41.667 7.77 0.00 34.60 3.41
1850 2024 5.767670 TGGGGAGCAGATAGATATAGGTAC 58.232 45.833 0.00 0.00 0.00 3.34
1887 2061 2.112815 GGGAGTAACGCATGGCACC 61.113 63.158 0.00 0.00 0.00 5.01
1948 2123 1.153489 CTCGAGGTGGGCATCACTG 60.153 63.158 3.91 1.60 45.38 3.66
1998 2178 4.462834 TGGATCAGTGTAACCAGTACTCAG 59.537 45.833 0.00 0.00 37.80 3.35
2088 2274 1.373246 CGGCAGAAAACCGTCGGTA 60.373 57.895 19.21 0.00 45.70 4.02
2127 2313 6.127451 GGAAATTCATTTCGGAAATGGTAGGT 60.127 38.462 32.05 19.18 46.40 3.08
2249 2435 3.019003 GCCTGGGCTCGAGCTTGTA 62.019 63.158 34.46 17.89 41.70 2.41
2270 2456 1.630369 ACTTCTAGACCATTGCCTGCA 59.370 47.619 0.00 0.00 0.00 4.41
2294 2480 2.564947 AGAGGTAGAACCAAGCTGTCAG 59.435 50.000 0.00 0.00 41.95 3.51
2316 2502 2.909662 TGATGGTTGAGGTGTGGATGTA 59.090 45.455 0.00 0.00 0.00 2.29
2319 2505 3.512496 TGGTTGAGGTGTGGATGTAGTA 58.488 45.455 0.00 0.00 0.00 1.82
2347 2533 9.277783 GAATGGACTGCAGTACAAAGATTATAT 57.722 33.333 34.56 12.97 43.04 0.86
2381 2567 6.643770 ACATGAAAAGACAGATGAAAATGCAC 59.356 34.615 0.00 0.00 0.00 4.57
2424 2611 9.525826 AATCTTTGTTTCAGATACCAGAATTCT 57.474 29.630 0.88 0.88 30.35 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.114670 ATTTGCTCGTGGGCGATGG 61.115 57.895 0.00 0.00 46.80 3.51
16 17 1.063006 CATTTGCTCGTGGGCGATG 59.937 57.895 0.00 0.00 46.80 3.84
17 18 0.960364 AACATTTGCTCGTGGGCGAT 60.960 50.000 0.00 0.00 46.80 4.58
18 19 1.169661 AAACATTTGCTCGTGGGCGA 61.170 50.000 0.00 0.00 45.79 5.54
19 20 1.003262 CAAACATTTGCTCGTGGGCG 61.003 55.000 0.00 0.00 39.92 6.13
20 21 0.667184 CCAAACATTTGCTCGTGGGC 60.667 55.000 0.00 0.00 36.86 5.36
21 22 0.673437 ACCAAACATTTGCTCGTGGG 59.327 50.000 0.00 0.00 36.86 4.61
22 23 1.336440 TGACCAAACATTTGCTCGTGG 59.664 47.619 0.00 0.00 36.86 4.94
23 24 2.223456 TGTGACCAAACATTTGCTCGTG 60.223 45.455 0.00 0.00 36.86 4.35
24 25 2.020720 TGTGACCAAACATTTGCTCGT 58.979 42.857 0.00 0.00 36.86 4.18
25 26 2.772568 TGTGACCAAACATTTGCTCG 57.227 45.000 0.00 0.00 36.86 5.03
26 27 3.551485 GTGTTGTGACCAAACATTTGCTC 59.449 43.478 0.00 0.00 36.86 4.26
27 28 3.520569 GTGTTGTGACCAAACATTTGCT 58.479 40.909 0.00 0.00 36.86 3.91
28 29 2.281234 CGTGTTGTGACCAAACATTTGC 59.719 45.455 0.00 0.00 36.86 3.68
29 30 3.763902 TCGTGTTGTGACCAAACATTTG 58.236 40.909 0.00 0.00 37.90 2.32
30 31 4.606961 GATCGTGTTGTGACCAAACATTT 58.393 39.130 0.00 0.00 30.94 2.32
31 32 3.303725 CGATCGTGTTGTGACCAAACATT 60.304 43.478 7.03 0.00 30.94 2.71
32 33 2.223144 CGATCGTGTTGTGACCAAACAT 59.777 45.455 7.03 0.00 30.94 2.71
33 34 1.595328 CGATCGTGTTGTGACCAAACA 59.405 47.619 7.03 0.00 30.94 2.83
34 35 1.595794 ACGATCGTGTTGTGACCAAAC 59.404 47.619 22.06 0.00 30.94 2.93
35 36 1.595328 CACGATCGTGTTGTGACCAAA 59.405 47.619 34.48 0.00 43.76 3.28
36 37 1.213491 CACGATCGTGTTGTGACCAA 58.787 50.000 34.48 0.00 43.76 3.67
37 38 0.598942 CCACGATCGTGTTGTGACCA 60.599 55.000 37.88 0.00 43.76 4.02
38 39 0.599204 ACCACGATCGTGTTGTGACC 60.599 55.000 37.88 0.00 43.76 4.02
39 40 1.070843 CAACCACGATCGTGTTGTGAC 60.071 52.381 37.88 0.00 43.76 3.67
40 41 1.213491 CAACCACGATCGTGTTGTGA 58.787 50.000 37.88 0.00 43.76 3.58
41 42 0.234625 CCAACCACGATCGTGTTGTG 59.765 55.000 37.88 30.63 44.02 3.33
42 43 0.105224 TCCAACCACGATCGTGTTGT 59.895 50.000 37.88 28.98 44.02 3.32
43 44 1.070175 GTTCCAACCACGATCGTGTTG 60.070 52.381 37.88 35.00 44.02 3.33
44 45 1.223187 GTTCCAACCACGATCGTGTT 58.777 50.000 37.88 29.35 44.02 3.32
45 46 0.105224 TGTTCCAACCACGATCGTGT 59.895 50.000 37.88 26.20 44.02 4.49
46 47 0.511221 GTGTTCCAACCACGATCGTG 59.489 55.000 35.57 35.57 45.02 4.35
47 48 0.601841 GGTGTTCCAACCACGATCGT 60.602 55.000 16.60 16.60 40.22 3.73
48 49 0.601576 TGGTGTTCCAACCACGATCG 60.602 55.000 14.88 14.88 45.43 3.69
49 50 3.315765 TGGTGTTCCAACCACGATC 57.684 52.632 0.00 0.00 45.43 3.69
58 59 3.142951 CCATCGTTTAGTTGGTGTTCCA 58.857 45.455 0.00 0.00 42.66 3.53
59 60 2.095415 GCCATCGTTTAGTTGGTGTTCC 60.095 50.000 0.00 0.00 40.89 3.62
60 61 2.812011 AGCCATCGTTTAGTTGGTGTTC 59.188 45.455 0.00 0.00 40.89 3.18
61 62 2.812011 GAGCCATCGTTTAGTTGGTGTT 59.188 45.455 0.00 0.00 40.89 3.32
62 63 2.423577 GAGCCATCGTTTAGTTGGTGT 58.576 47.619 0.00 0.00 40.89 4.16
63 64 1.393539 CGAGCCATCGTTTAGTTGGTG 59.606 52.381 0.00 0.00 44.09 4.17
64 65 1.722011 CGAGCCATCGTTTAGTTGGT 58.278 50.000 0.00 0.00 44.09 3.67
75 76 3.157217 ATGAGGACCGCGAGCCATC 62.157 63.158 8.23 3.72 0.00 3.51
76 77 3.157252 ATGAGGACCGCGAGCCAT 61.157 61.111 8.23 0.28 0.00 4.40
77 78 4.147449 CATGAGGACCGCGAGCCA 62.147 66.667 8.23 0.00 0.00 4.75
78 79 4.899239 CCATGAGGACCGCGAGCC 62.899 72.222 8.23 8.64 36.89 4.70
80 81 4.899239 GGCCATGAGGACCGCGAG 62.899 72.222 8.23 0.00 36.69 5.03
83 84 3.746949 CTCTGGCCATGAGGACCGC 62.747 68.421 19.07 0.00 45.14 5.68
84 85 2.503061 CTCTGGCCATGAGGACCG 59.497 66.667 19.07 1.71 45.14 4.79
85 86 2.191641 GCTCTGGCCATGAGGACC 59.808 66.667 24.62 11.24 45.14 4.46
86 87 1.451028 GTGCTCTGGCCATGAGGAC 60.451 63.158 27.76 27.76 46.36 3.85
87 88 1.491274 TTGTGCTCTGGCCATGAGGA 61.491 55.000 24.62 21.51 36.89 3.71
88 89 1.001764 TTGTGCTCTGGCCATGAGG 60.002 57.895 24.62 8.55 37.74 3.86
89 90 1.310933 GGTTGTGCTCTGGCCATGAG 61.311 60.000 21.31 21.31 37.74 2.90
90 91 1.303561 GGTTGTGCTCTGGCCATGA 60.304 57.895 5.51 5.20 37.74 3.07
91 92 1.604308 TGGTTGTGCTCTGGCCATG 60.604 57.895 5.51 3.24 37.74 3.66
92 93 1.604593 GTGGTTGTGCTCTGGCCAT 60.605 57.895 5.51 0.00 37.74 4.40
93 94 2.203337 GTGGTTGTGCTCTGGCCA 60.203 61.111 4.71 4.71 37.74 5.36
94 95 2.985847 GGTGGTTGTGCTCTGGCC 60.986 66.667 0.00 0.00 37.74 5.36
95 96 3.357079 CGGTGGTTGTGCTCTGGC 61.357 66.667 0.00 0.00 39.26 4.85
96 97 3.357079 GCGGTGGTTGTGCTCTGG 61.357 66.667 0.00 0.00 0.00 3.86
97 98 2.281070 AGCGGTGGTTGTGCTCTG 60.281 61.111 0.00 0.00 32.44 3.35
100 101 4.235762 ACGAGCGGTGGTTGTGCT 62.236 61.111 0.00 0.00 42.73 4.40
101 102 4.012895 CACGAGCGGTGGTTGTGC 62.013 66.667 0.00 0.00 43.16 4.57
118 119 2.897350 GGCTACAGTGCCCATCGC 60.897 66.667 3.30 0.00 46.82 4.58
125 126 0.747852 GTCTCCTAGGGCTACAGTGC 59.252 60.000 9.46 0.00 0.00 4.40
126 127 2.145397 TGTCTCCTAGGGCTACAGTG 57.855 55.000 9.46 0.00 0.00 3.66
127 128 2.225293 TGTTGTCTCCTAGGGCTACAGT 60.225 50.000 9.46 0.00 0.00 3.55
128 129 2.457598 TGTTGTCTCCTAGGGCTACAG 58.542 52.381 9.46 0.00 0.00 2.74
129 130 2.565834 GTTGTTGTCTCCTAGGGCTACA 59.434 50.000 9.46 8.23 0.00 2.74
130 131 2.093606 GGTTGTTGTCTCCTAGGGCTAC 60.094 54.545 9.46 5.56 0.00 3.58
131 132 2.185387 GGTTGTTGTCTCCTAGGGCTA 58.815 52.381 9.46 0.00 0.00 3.93
132 133 0.984995 GGTTGTTGTCTCCTAGGGCT 59.015 55.000 9.46 0.00 0.00 5.19
133 134 0.035343 GGGTTGTTGTCTCCTAGGGC 60.035 60.000 9.46 0.30 0.00 5.19
134 135 1.279271 CTGGGTTGTTGTCTCCTAGGG 59.721 57.143 9.46 0.00 0.00 3.53
135 136 1.339151 GCTGGGTTGTTGTCTCCTAGG 60.339 57.143 0.82 0.82 31.84 3.02
136 137 1.673033 CGCTGGGTTGTTGTCTCCTAG 60.673 57.143 0.00 0.00 33.84 3.02
137 138 0.320374 CGCTGGGTTGTTGTCTCCTA 59.680 55.000 0.00 0.00 0.00 2.94
138 139 1.071471 CGCTGGGTTGTTGTCTCCT 59.929 57.895 0.00 0.00 0.00 3.69
139 140 1.227853 ACGCTGGGTTGTTGTCTCC 60.228 57.895 0.00 0.00 0.00 3.71
140 141 1.557443 CGACGCTGGGTTGTTGTCTC 61.557 60.000 0.00 0.00 0.00 3.36
141 142 1.594293 CGACGCTGGGTTGTTGTCT 60.594 57.895 0.00 0.00 0.00 3.41
142 143 2.935955 CGACGCTGGGTTGTTGTC 59.064 61.111 0.00 0.00 0.00 3.18
143 144 3.276846 GCGACGCTGGGTTGTTGT 61.277 61.111 13.73 0.00 32.16 3.32
144 145 2.972505 AGCGACGCTGGGTTGTTG 60.973 61.111 23.84 0.00 37.57 3.33
156 157 3.023949 ATCCTGGTGGAGCAGCGAC 62.024 63.158 0.07 0.00 46.91 5.19
157 158 2.685017 ATCCTGGTGGAGCAGCGA 60.685 61.111 0.07 0.77 46.91 4.93
158 159 2.513204 CATCCTGGTGGAGCAGCG 60.513 66.667 0.07 0.00 46.91 5.18
159 160 0.747283 CTTCATCCTGGTGGAGCAGC 60.747 60.000 0.07 0.00 46.91 5.25
160 161 0.907486 TCTTCATCCTGGTGGAGCAG 59.093 55.000 0.00 0.00 46.91 4.24
161 162 0.615331 GTCTTCATCCTGGTGGAGCA 59.385 55.000 0.00 0.00 46.91 4.26
162 163 0.107459 GGTCTTCATCCTGGTGGAGC 60.107 60.000 0.00 0.00 46.91 4.70
163 164 0.543749 GGGTCTTCATCCTGGTGGAG 59.456 60.000 0.00 0.00 46.91 3.86
165 166 1.207488 TGGGGTCTTCATCCTGGTGG 61.207 60.000 0.00 0.00 0.00 4.61
166 167 0.921896 ATGGGGTCTTCATCCTGGTG 59.078 55.000 0.00 0.00 0.00 4.17
167 168 2.293856 ACTATGGGGTCTTCATCCTGGT 60.294 50.000 0.00 0.00 0.00 4.00
168 169 2.370189 GACTATGGGGTCTTCATCCTGG 59.630 54.545 0.00 0.00 33.81 4.45
169 170 2.370189 GGACTATGGGGTCTTCATCCTG 59.630 54.545 0.00 0.00 36.55 3.86
170 171 2.251338 AGGACTATGGGGTCTTCATCCT 59.749 50.000 0.00 0.00 36.55 3.24
171 172 2.695585 AGGACTATGGGGTCTTCATCC 58.304 52.381 0.00 0.00 36.55 3.51
172 173 4.709250 GAAAGGACTATGGGGTCTTCATC 58.291 47.826 0.00 0.00 36.55 2.92
173 174 3.134804 CGAAAGGACTATGGGGTCTTCAT 59.865 47.826 0.00 0.00 36.55 2.57
174 175 2.500098 CGAAAGGACTATGGGGTCTTCA 59.500 50.000 0.00 0.00 36.55 3.02
175 176 3.180891 CGAAAGGACTATGGGGTCTTC 57.819 52.381 0.00 0.00 36.55 2.87
190 191 2.471255 GGTGGATCAGCACCGAAAG 58.529 57.895 5.51 0.00 0.00 2.62
191 192 4.713946 GGTGGATCAGCACCGAAA 57.286 55.556 5.51 0.00 0.00 3.46
195 196 1.741770 GTGACGGTGGATCAGCACC 60.742 63.158 10.29 10.29 38.08 5.01
196 197 1.741770 GGTGACGGTGGATCAGCAC 60.742 63.158 0.00 0.00 42.78 4.40
197 198 1.888436 GAGGTGACGGTGGATCAGCA 61.888 60.000 6.92 0.00 45.10 4.41
198 199 1.153549 GAGGTGACGGTGGATCAGC 60.154 63.158 0.00 0.00 43.42 4.26
199 200 1.139734 CGAGGTGACGGTGGATCAG 59.860 63.158 0.00 0.00 0.00 2.90
200 201 2.348104 CCGAGGTGACGGTGGATCA 61.348 63.158 0.00 0.00 46.70 2.92
201 202 2.494918 CCGAGGTGACGGTGGATC 59.505 66.667 0.00 0.00 46.70 3.36
208 209 4.452733 GCCCTTCCCGAGGTGACG 62.453 72.222 0.00 0.00 44.71 4.35
209 210 3.316573 CTGCCCTTCCCGAGGTGAC 62.317 68.421 0.00 0.00 44.71 3.67
210 211 3.003173 CTGCCCTTCCCGAGGTGA 61.003 66.667 0.00 0.00 44.71 4.02
211 212 3.003173 TCTGCCCTTCCCGAGGTG 61.003 66.667 0.00 0.00 44.71 4.00
212 213 2.685380 CTCTGCCCTTCCCGAGGT 60.685 66.667 0.00 0.00 44.71 3.85
213 214 4.168291 GCTCTGCCCTTCCCGAGG 62.168 72.222 0.00 0.00 45.86 4.63
214 215 4.521062 CGCTCTGCCCTTCCCGAG 62.521 72.222 0.00 0.00 0.00 4.63
217 218 4.785453 CACCGCTCTGCCCTTCCC 62.785 72.222 0.00 0.00 0.00 3.97
218 219 4.785453 CCACCGCTCTGCCCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
229 230 4.910585 CATCTACCCCGCCACCGC 62.911 72.222 0.00 0.00 0.00 5.68
230 231 3.151710 TCATCTACCCCGCCACCG 61.152 66.667 0.00 0.00 0.00 4.94
231 232 1.335132 TTCTCATCTACCCCGCCACC 61.335 60.000 0.00 0.00 0.00 4.61
232 233 0.105039 CTTCTCATCTACCCCGCCAC 59.895 60.000 0.00 0.00 0.00 5.01
233 234 0.032515 TCTTCTCATCTACCCCGCCA 60.033 55.000 0.00 0.00 0.00 5.69
234 235 0.676736 CTCTTCTCATCTACCCCGCC 59.323 60.000 0.00 0.00 0.00 6.13
235 236 1.693627 TCTCTTCTCATCTACCCCGC 58.306 55.000 0.00 0.00 0.00 6.13
236 237 4.218852 GGTAATCTCTTCTCATCTACCCCG 59.781 50.000 0.00 0.00 0.00 5.73
237 238 5.011227 GTGGTAATCTCTTCTCATCTACCCC 59.989 48.000 0.00 0.00 0.00 4.95
238 239 5.598830 TGTGGTAATCTCTTCTCATCTACCC 59.401 44.000 0.00 0.00 0.00 3.69
239 240 6.508777 GTGTGGTAATCTCTTCTCATCTACC 58.491 44.000 0.00 0.00 0.00 3.18
240 241 6.183360 ACGTGTGGTAATCTCTTCTCATCTAC 60.183 42.308 0.00 0.00 0.00 2.59
241 242 5.886474 ACGTGTGGTAATCTCTTCTCATCTA 59.114 40.000 0.00 0.00 0.00 1.98
242 243 4.707448 ACGTGTGGTAATCTCTTCTCATCT 59.293 41.667 0.00 0.00 0.00 2.90
243 244 5.000012 ACGTGTGGTAATCTCTTCTCATC 58.000 43.478 0.00 0.00 0.00 2.92
244 245 5.171476 CAACGTGTGGTAATCTCTTCTCAT 58.829 41.667 0.00 0.00 0.00 2.90
245 246 4.556233 CAACGTGTGGTAATCTCTTCTCA 58.444 43.478 0.00 0.00 0.00 3.27
246 247 3.927142 CCAACGTGTGGTAATCTCTTCTC 59.073 47.826 8.17 0.00 43.20 2.87
247 248 3.926616 CCAACGTGTGGTAATCTCTTCT 58.073 45.455 8.17 0.00 43.20 2.85
259 260 0.034756 TCTCCATCACCCAACGTGTG 59.965 55.000 0.00 0.00 43.51 3.82
260 261 0.321671 CTCTCCATCACCCAACGTGT 59.678 55.000 0.00 0.00 43.51 4.49
261 262 0.391661 CCTCTCCATCACCCAACGTG 60.392 60.000 0.00 0.00 44.50 4.49
262 263 1.983224 CCTCTCCATCACCCAACGT 59.017 57.895 0.00 0.00 0.00 3.99
263 264 1.450312 GCCTCTCCATCACCCAACG 60.450 63.158 0.00 0.00 0.00 4.10
264 265 1.077429 GGCCTCTCCATCACCCAAC 60.077 63.158 0.00 0.00 34.01 3.77
265 266 0.846427 AAGGCCTCTCCATCACCCAA 60.846 55.000 5.23 0.00 37.29 4.12
266 267 1.229951 AAGGCCTCTCCATCACCCA 60.230 57.895 5.23 0.00 37.29 4.51
267 268 1.529309 GAAGGCCTCTCCATCACCC 59.471 63.158 5.23 0.00 37.29 4.61
268 269 1.529309 GGAAGGCCTCTCCATCACC 59.471 63.158 22.10 7.46 34.30 4.02
269 270 1.274703 TGGGAAGGCCTCTCCATCAC 61.275 60.000 25.84 14.61 36.52 3.06
270 271 0.984961 CTGGGAAGGCCTCTCCATCA 60.985 60.000 25.84 17.84 34.30 3.07
271 272 0.985490 ACTGGGAAGGCCTCTCCATC 60.985 60.000 25.84 13.11 37.29 3.51
272 273 0.985490 GACTGGGAAGGCCTCTCCAT 60.985 60.000 25.84 16.95 37.29 3.41
273 274 1.613630 GACTGGGAAGGCCTCTCCA 60.614 63.158 25.84 23.78 37.29 3.86
274 275 2.726351 CGACTGGGAAGGCCTCTCC 61.726 68.421 20.01 20.01 0.00 3.71
275 276 2.896443 CGACTGGGAAGGCCTCTC 59.104 66.667 5.23 6.02 0.00 3.20
276 277 3.394836 GCGACTGGGAAGGCCTCT 61.395 66.667 5.23 0.00 0.00 3.69
277 278 4.821589 CGCGACTGGGAAGGCCTC 62.822 72.222 5.23 0.00 0.00 4.70
279 280 4.162690 ATCGCGACTGGGAAGGCC 62.163 66.667 12.93 0.00 40.79 5.19
280 281 2.892425 CATCGCGACTGGGAAGGC 60.892 66.667 12.93 0.00 40.79 4.35
281 282 1.227089 CTCATCGCGACTGGGAAGG 60.227 63.158 12.93 0.00 40.79 3.46
282 283 1.227089 CCTCATCGCGACTGGGAAG 60.227 63.158 12.93 5.02 40.79 3.46
283 284 2.721167 CCCTCATCGCGACTGGGAA 61.721 63.158 28.46 0.36 40.79 3.97
284 285 3.147595 CCCTCATCGCGACTGGGA 61.148 66.667 28.46 16.31 40.23 4.37
285 286 3.019003 AACCCTCATCGCGACTGGG 62.019 63.158 29.69 29.69 43.26 4.45
286 287 2.579201 AACCCTCATCGCGACTGG 59.421 61.111 12.93 14.00 0.00 4.00
592 593 1.594331 GTTATCAAGCGGGGCCTTAG 58.406 55.000 0.84 0.00 0.00 2.18
593 594 0.179067 CGTTATCAAGCGGGGCCTTA 60.179 55.000 0.84 0.00 0.00 2.69
594 595 1.451387 CGTTATCAAGCGGGGCCTT 60.451 57.895 0.84 0.00 0.00 4.35
595 596 2.189521 CGTTATCAAGCGGGGCCT 59.810 61.111 0.84 0.00 0.00 5.19
596 597 2.900337 CCGTTATCAAGCGGGGCC 60.900 66.667 0.00 0.00 43.85 5.80
601 602 6.764877 ATAGAAATACACCGTTATCAAGCG 57.235 37.500 0.00 0.00 0.00 4.68
602 603 8.583810 TGTATAGAAATACACCGTTATCAAGC 57.416 34.615 0.00 0.00 42.40 4.01
647 648 3.071747 TCAAGTGTGGCCAGTGTTATACA 59.928 43.478 5.11 0.00 0.00 2.29
648 649 3.670625 TCAAGTGTGGCCAGTGTTATAC 58.329 45.455 5.11 0.00 0.00 1.47
649 650 4.568072 ATCAAGTGTGGCCAGTGTTATA 57.432 40.909 5.11 0.00 0.00 0.98
650 651 2.949177 TCAAGTGTGGCCAGTGTTAT 57.051 45.000 5.11 0.00 0.00 1.89
651 652 2.949177 ATCAAGTGTGGCCAGTGTTA 57.051 45.000 5.11 0.00 0.00 2.41
652 653 2.071778 AATCAAGTGTGGCCAGTGTT 57.928 45.000 5.11 0.00 0.00 3.32
653 654 2.071778 AAATCAAGTGTGGCCAGTGT 57.928 45.000 5.11 0.00 0.00 3.55
654 655 2.361757 TGAAAATCAAGTGTGGCCAGTG 59.638 45.455 5.11 1.93 0.00 3.66
655 656 2.665165 TGAAAATCAAGTGTGGCCAGT 58.335 42.857 5.11 0.00 0.00 4.00
656 657 3.947910 ATGAAAATCAAGTGTGGCCAG 57.052 42.857 5.11 0.00 0.00 4.85
657 658 4.100653 TCAAATGAAAATCAAGTGTGGCCA 59.899 37.500 0.00 0.00 0.00 5.36
658 659 4.630111 TCAAATGAAAATCAAGTGTGGCC 58.370 39.130 0.00 0.00 0.00 5.36
659 660 6.601741 TTTCAAATGAAAATCAAGTGTGGC 57.398 33.333 6.13 0.00 40.68 5.01
671 672 7.095695 AGGTCGTTCTTCTTTTCAAATGAAA 57.904 32.000 4.52 4.52 41.77 2.69
672 673 6.693315 AGGTCGTTCTTCTTTTCAAATGAA 57.307 33.333 0.00 0.00 0.00 2.57
673 674 7.659799 TCATAGGTCGTTCTTCTTTTCAAATGA 59.340 33.333 0.00 0.00 0.00 2.57
674 675 7.806690 TCATAGGTCGTTCTTCTTTTCAAATG 58.193 34.615 0.00 0.00 0.00 2.32
675 676 7.979444 TCATAGGTCGTTCTTCTTTTCAAAT 57.021 32.000 0.00 0.00 0.00 2.32
676 677 7.041372 CCTTCATAGGTCGTTCTTCTTTTCAAA 60.041 37.037 0.00 0.00 36.74 2.69
677 678 6.426937 CCTTCATAGGTCGTTCTTCTTTTCAA 59.573 38.462 0.00 0.00 36.74 2.69
678 679 5.932303 CCTTCATAGGTCGTTCTTCTTTTCA 59.068 40.000 0.00 0.00 36.74 2.69
679 680 6.410243 CCTTCATAGGTCGTTCTTCTTTTC 57.590 41.667 0.00 0.00 36.74 2.29
696 697 9.990868 ACCCTTGTAAAATTTATAGACCTTCAT 57.009 29.630 0.00 0.00 0.00 2.57
706 707 9.569122 AGCGTCATATACCCTTGTAAAATTTAT 57.431 29.630 0.00 0.00 0.00 1.40
707 708 8.832521 CAGCGTCATATACCCTTGTAAAATTTA 58.167 33.333 0.00 0.00 0.00 1.40
708 709 7.338449 ACAGCGTCATATACCCTTGTAAAATTT 59.662 33.333 0.00 0.00 0.00 1.82
709 710 6.826741 ACAGCGTCATATACCCTTGTAAAATT 59.173 34.615 0.00 0.00 0.00 1.82
710 711 6.260050 CACAGCGTCATATACCCTTGTAAAAT 59.740 38.462 0.00 0.00 0.00 1.82
711 712 5.583061 CACAGCGTCATATACCCTTGTAAAA 59.417 40.000 0.00 0.00 0.00 1.52
712 713 5.105269 TCACAGCGTCATATACCCTTGTAAA 60.105 40.000 0.00 0.00 0.00 2.01
713 714 4.403113 TCACAGCGTCATATACCCTTGTAA 59.597 41.667 0.00 0.00 0.00 2.41
714 715 3.955551 TCACAGCGTCATATACCCTTGTA 59.044 43.478 0.00 0.00 0.00 2.41
715 716 2.764010 TCACAGCGTCATATACCCTTGT 59.236 45.455 0.00 0.00 0.00 3.16
716 717 3.452755 TCACAGCGTCATATACCCTTG 57.547 47.619 0.00 0.00 0.00 3.61
717 718 4.189231 GTTTCACAGCGTCATATACCCTT 58.811 43.478 0.00 0.00 0.00 3.95
718 719 3.737047 CGTTTCACAGCGTCATATACCCT 60.737 47.826 0.00 0.00 0.00 4.34
719 720 2.538449 CGTTTCACAGCGTCATATACCC 59.462 50.000 0.00 0.00 0.00 3.69
720 721 2.034001 GCGTTTCACAGCGTCATATACC 60.034 50.000 0.00 0.00 0.00 2.73
721 722 2.034001 GGCGTTTCACAGCGTCATATAC 60.034 50.000 0.00 0.00 32.48 1.47
722 723 2.198406 GGCGTTTCACAGCGTCATATA 58.802 47.619 0.00 0.00 32.48 0.86
723 724 1.006832 GGCGTTTCACAGCGTCATAT 58.993 50.000 0.00 0.00 32.48 1.78
724 725 0.319986 TGGCGTTTCACAGCGTCATA 60.320 50.000 0.00 0.00 37.82 2.15
725 726 1.163420 TTGGCGTTTCACAGCGTCAT 61.163 50.000 0.00 0.00 42.36 3.06
726 727 1.163420 ATTGGCGTTTCACAGCGTCA 61.163 50.000 0.00 0.00 41.10 4.35
727 728 0.452784 GATTGGCGTTTCACAGCGTC 60.453 55.000 0.00 0.00 0.00 5.19
728 729 1.574428 GATTGGCGTTTCACAGCGT 59.426 52.632 0.00 0.00 0.00 5.07
729 730 1.154225 GGATTGGCGTTTCACAGCG 60.154 57.895 0.00 0.00 0.00 5.18
730 731 0.313672 TTGGATTGGCGTTTCACAGC 59.686 50.000 0.00 0.00 0.00 4.40
731 732 2.228582 TGATTGGATTGGCGTTTCACAG 59.771 45.455 0.00 0.00 0.00 3.66
732 733 2.228582 CTGATTGGATTGGCGTTTCACA 59.771 45.455 0.00 0.00 0.00 3.58
733 734 2.415893 CCTGATTGGATTGGCGTTTCAC 60.416 50.000 0.00 0.00 38.35 3.18
734 735 1.818060 CCTGATTGGATTGGCGTTTCA 59.182 47.619 0.00 0.00 38.35 2.69
735 736 1.469767 GCCTGATTGGATTGGCGTTTC 60.470 52.381 0.00 0.00 38.35 2.78
736 737 0.532115 GCCTGATTGGATTGGCGTTT 59.468 50.000 0.00 0.00 38.35 3.60
737 738 1.322538 GGCCTGATTGGATTGGCGTT 61.323 55.000 0.00 0.00 45.75 4.84
738 739 1.754234 GGCCTGATTGGATTGGCGT 60.754 57.895 0.00 0.00 45.75 5.68
739 740 0.179020 TAGGCCTGATTGGATTGGCG 60.179 55.000 17.99 0.00 45.75 5.69
740 741 1.959282 CTTAGGCCTGATTGGATTGGC 59.041 52.381 17.99 0.00 44.22 4.52
741 742 3.117738 AGACTTAGGCCTGATTGGATTGG 60.118 47.826 17.99 0.00 38.35 3.16
742 743 4.133078 GAGACTTAGGCCTGATTGGATTG 58.867 47.826 17.99 0.00 38.35 2.67
743 744 4.043596 AGAGACTTAGGCCTGATTGGATT 58.956 43.478 17.99 0.00 38.35 3.01
744 745 3.390639 CAGAGACTTAGGCCTGATTGGAT 59.609 47.826 17.99 0.00 38.35 3.41
745 746 2.768527 CAGAGACTTAGGCCTGATTGGA 59.231 50.000 17.99 0.00 38.35 3.53
746 747 2.768527 TCAGAGACTTAGGCCTGATTGG 59.231 50.000 17.99 0.00 39.35 3.16
747 748 4.100653 TGATCAGAGACTTAGGCCTGATTG 59.899 45.833 17.99 5.00 43.88 2.67
748 749 4.293494 TGATCAGAGACTTAGGCCTGATT 58.707 43.478 17.99 0.00 43.88 2.57
749 750 3.896888 CTGATCAGAGACTTAGGCCTGAT 59.103 47.826 18.34 15.58 45.77 2.90
750 751 3.053320 TCTGATCAGAGACTTAGGCCTGA 60.053 47.826 21.67 6.19 39.60 3.86
751 752 3.295093 TCTGATCAGAGACTTAGGCCTG 58.705 50.000 21.67 0.87 32.82 4.85
752 753 3.678965 TCTGATCAGAGACTTAGGCCT 57.321 47.619 21.67 11.78 32.82 5.19
753 754 4.462483 CCTATCTGATCAGAGACTTAGGCC 59.538 50.000 26.25 0.00 41.33 5.19
754 755 4.082245 GCCTATCTGATCAGAGACTTAGGC 60.082 50.000 36.44 36.44 46.48 3.93
755 756 5.324409 AGCCTATCTGATCAGAGACTTAGG 58.676 45.833 29.99 29.99 41.33 2.69
756 757 8.579850 AATAGCCTATCTGATCAGAGACTTAG 57.420 38.462 28.26 22.69 41.33 2.18
757 758 8.166726 TGAATAGCCTATCTGATCAGAGACTTA 58.833 37.037 28.26 15.74 41.33 2.24
758 759 7.009550 TGAATAGCCTATCTGATCAGAGACTT 58.990 38.462 28.26 15.46 41.33 3.01
759 760 6.434028 GTGAATAGCCTATCTGATCAGAGACT 59.566 42.308 28.26 22.39 41.33 3.24
760 761 6.434028 AGTGAATAGCCTATCTGATCAGAGAC 59.566 42.308 28.26 17.42 41.33 3.36
761 762 6.551085 AGTGAATAGCCTATCTGATCAGAGA 58.449 40.000 28.26 23.53 41.33 3.10
762 763 6.433716 TGAGTGAATAGCCTATCTGATCAGAG 59.566 42.308 28.26 17.06 41.33 3.35
763 764 6.310149 TGAGTGAATAGCCTATCTGATCAGA 58.690 40.000 27.03 27.03 42.37 3.27
764 765 6.587206 TGAGTGAATAGCCTATCTGATCAG 57.413 41.667 17.07 17.07 0.00 2.90
765 766 6.723052 TGATGAGTGAATAGCCTATCTGATCA 59.277 38.462 0.00 0.00 0.00 2.92
766 767 7.035004 GTGATGAGTGAATAGCCTATCTGATC 58.965 42.308 0.00 0.00 0.00 2.92
767 768 6.725369 AGTGATGAGTGAATAGCCTATCTGAT 59.275 38.462 0.00 0.00 0.00 2.90
768 769 6.073981 AGTGATGAGTGAATAGCCTATCTGA 58.926 40.000 0.00 0.00 0.00 3.27
769 770 6.015603 TGAGTGATGAGTGAATAGCCTATCTG 60.016 42.308 0.00 0.00 0.00 2.90
770 771 6.015519 GTGAGTGATGAGTGAATAGCCTATCT 60.016 42.308 0.00 0.00 0.00 1.98
771 772 6.155827 GTGAGTGATGAGTGAATAGCCTATC 58.844 44.000 0.00 0.00 0.00 2.08
772 773 5.600069 TGTGAGTGATGAGTGAATAGCCTAT 59.400 40.000 0.00 0.00 0.00 2.57
773 774 4.956075 TGTGAGTGATGAGTGAATAGCCTA 59.044 41.667 0.00 0.00 0.00 3.93
774 775 3.771479 TGTGAGTGATGAGTGAATAGCCT 59.229 43.478 0.00 0.00 0.00 4.58
775 776 3.868077 GTGTGAGTGATGAGTGAATAGCC 59.132 47.826 0.00 0.00 0.00 3.93
776 777 3.868077 GGTGTGAGTGATGAGTGAATAGC 59.132 47.826 0.00 0.00 0.00 2.97
777 778 5.336150 AGGTGTGAGTGATGAGTGAATAG 57.664 43.478 0.00 0.00 0.00 1.73
778 779 4.160439 GGAGGTGTGAGTGATGAGTGAATA 59.840 45.833 0.00 0.00 0.00 1.75
779 780 3.055530 GGAGGTGTGAGTGATGAGTGAAT 60.056 47.826 0.00 0.00 0.00 2.57
780 781 2.300152 GGAGGTGTGAGTGATGAGTGAA 59.700 50.000 0.00 0.00 0.00 3.18
781 782 1.895798 GGAGGTGTGAGTGATGAGTGA 59.104 52.381 0.00 0.00 0.00 3.41
782 783 1.620323 TGGAGGTGTGAGTGATGAGTG 59.380 52.381 0.00 0.00 0.00 3.51
783 784 1.620819 GTGGAGGTGTGAGTGATGAGT 59.379 52.381 0.00 0.00 0.00 3.41
784 785 1.620323 TGTGGAGGTGTGAGTGATGAG 59.380 52.381 0.00 0.00 0.00 2.90
785 786 1.715785 TGTGGAGGTGTGAGTGATGA 58.284 50.000 0.00 0.00 0.00 2.92
786 787 2.549064 TTGTGGAGGTGTGAGTGATG 57.451 50.000 0.00 0.00 0.00 3.07
787 788 2.290514 CCATTGTGGAGGTGTGAGTGAT 60.291 50.000 0.00 0.00 40.96 3.06
788 789 1.072173 CCATTGTGGAGGTGTGAGTGA 59.928 52.381 0.00 0.00 40.96 3.41
789 790 1.072173 TCCATTGTGGAGGTGTGAGTG 59.928 52.381 0.00 0.00 42.67 3.51
790 791 1.434188 TCCATTGTGGAGGTGTGAGT 58.566 50.000 0.00 0.00 42.67 3.41
799 800 4.764823 GGTTTCATGTTACTCCATTGTGGA 59.235 41.667 0.00 0.00 45.98 4.02
800 801 4.766891 AGGTTTCATGTTACTCCATTGTGG 59.233 41.667 0.00 0.00 39.43 4.17
801 802 5.106157 GGAGGTTTCATGTTACTCCATTGTG 60.106 44.000 17.43 0.00 45.45 3.33
802 803 5.010282 GGAGGTTTCATGTTACTCCATTGT 58.990 41.667 17.43 0.00 45.45 2.71
803 804 5.567138 GGAGGTTTCATGTTACTCCATTG 57.433 43.478 17.43 0.00 45.45 2.82
807 808 2.027469 ACGGGAGGTTTCATGTTACTCC 60.027 50.000 15.36 15.36 45.41 3.85
808 809 3.000727 CACGGGAGGTTTCATGTTACTC 58.999 50.000 0.00 0.00 0.00 2.59
809 810 2.635915 TCACGGGAGGTTTCATGTTACT 59.364 45.455 0.00 0.00 0.00 2.24
810 811 3.000727 CTCACGGGAGGTTTCATGTTAC 58.999 50.000 6.84 0.00 37.51 2.50
811 812 3.328382 CTCACGGGAGGTTTCATGTTA 57.672 47.619 6.84 0.00 37.51 2.41
812 813 2.185004 CTCACGGGAGGTTTCATGTT 57.815 50.000 6.84 0.00 37.51 2.71
813 814 3.935993 CTCACGGGAGGTTTCATGT 57.064 52.632 6.84 0.00 37.51 3.21
827 828 2.017559 AACCGCTAGATCCGCCTCAC 62.018 60.000 0.00 0.00 0.00 3.51
860 861 2.961741 TCAGAGCCGCTCATTATCTTCT 59.038 45.455 22.29 0.00 32.06 2.85
878 879 1.468054 GCTTTGCCTTGGCGTAATCAG 60.468 52.381 7.18 0.00 0.00 2.90
900 901 0.589729 GCTGCTGTGTTGTGTTGTCG 60.590 55.000 0.00 0.00 0.00 4.35
913 914 2.044832 GATAAGGCGCTGTGCTGCTG 62.045 60.000 13.46 0.00 45.43 4.41
1462 1480 2.190578 GCGTGGGAAGATGAGGGG 59.809 66.667 0.00 0.00 0.00 4.79
1463 1481 2.190578 GGCGTGGGAAGATGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
1464 1482 2.202932 CGGCGTGGGAAGATGAGG 60.203 66.667 0.00 0.00 0.00 3.86
1465 1483 2.202932 CCGGCGTGGGAAGATGAG 60.203 66.667 6.01 0.00 0.00 2.90
1466 1484 4.467084 GCCGGCGTGGGAAGATGA 62.467 66.667 12.58 0.00 38.63 2.92
1599 1630 4.572985 TTGAAGATTGTTCAGGCAACAG 57.427 40.909 0.00 0.00 45.98 3.16
1618 1649 2.991190 GCATGACAAGCAGGAATGTTTG 59.009 45.455 0.00 3.67 36.33 2.93
1619 1650 2.895404 AGCATGACAAGCAGGAATGTTT 59.105 40.909 5.34 0.00 0.00 2.83
1672 1703 5.810074 TCACATGAAATCTTTCGATTCGCTA 59.190 36.000 0.00 0.00 38.89 4.26
1700 1757 5.375544 TCATCAAATCTTTCGATTCGTCG 57.624 39.130 5.89 0.00 38.89 5.12
1701 1758 5.193936 GCTCATCAAATCTTTCGATTCGTC 58.806 41.667 5.89 0.00 38.89 4.20
1702 1759 4.631377 TGCTCATCAAATCTTTCGATTCGT 59.369 37.500 5.89 0.00 38.89 3.85
1722 1779 1.636148 ACAAATGATGTGCCCTTGCT 58.364 45.000 0.00 0.00 41.93 3.91
1782 1952 4.278669 TGTCTGAGACTCAAGTACTGAACC 59.721 45.833 14.42 0.00 32.17 3.62
1790 1960 3.977134 ATGCATGTCTGAGACTCAAGT 57.023 42.857 14.42 0.00 33.15 3.16
1791 1961 4.989797 GGATATGCATGTCTGAGACTCAAG 59.010 45.833 21.04 1.42 33.15 3.02
1793 1963 3.962718 TGGATATGCATGTCTGAGACTCA 59.037 43.478 21.04 4.78 33.15 3.41
1794 1964 4.597404 TGGATATGCATGTCTGAGACTC 57.403 45.455 21.04 5.26 33.15 3.36
1816 1986 1.421268 CTGCTCCCCATGCCTGTAATA 59.579 52.381 0.00 0.00 0.00 0.98
1850 2024 7.660030 ACTCCCAAATAAATAATGACCTTGG 57.340 36.000 0.00 0.00 33.20 3.61
1887 2061 4.033817 GCAGAATCTGAGAGAAAACATCCG 59.966 45.833 15.38 0.00 32.44 4.18
1998 2178 5.684626 CACTGTCAGTTTTTCTTTCTGCATC 59.315 40.000 1.67 0.00 0.00 3.91
2074 2260 5.334337 GCTTAAATTGTACCGACGGTTTTCT 60.334 40.000 27.06 7.96 37.09 2.52
2083 2269 2.496871 TCCCGAGCTTAAATTGTACCGA 59.503 45.455 0.00 0.00 0.00 4.69
2088 2274 5.975693 TGAATTTCCCGAGCTTAAATTGT 57.024 34.783 12.08 0.00 33.99 2.71
2139 2325 3.655486 TGCAGTTGAAAATCCATTGCAG 58.345 40.909 0.00 0.00 34.39 4.41
2249 2435 2.040278 TGCAGGCAATGGTCTAGAAGTT 59.960 45.455 0.00 0.00 0.00 2.66
2270 2456 3.764972 GACAGCTTGGTTCTACCTCTACT 59.235 47.826 0.00 0.00 39.58 2.57
2294 2480 2.086869 CATCCACACCTCAACCATCAC 58.913 52.381 0.00 0.00 0.00 3.06
2316 2502 3.441101 TGTACTGCAGTCCATTCCTACT 58.559 45.455 25.56 0.00 0.00 2.57
2319 2505 3.327757 TCTTTGTACTGCAGTCCATTCCT 59.672 43.478 25.56 0.00 0.00 3.36
2347 2533 8.358895 TCATCTGTCTTTTCATGTTTATTGCAA 58.641 29.630 0.00 0.00 0.00 4.08
2391 2577 9.513906 TGGTATCTGAAACAAAGATTGTGAATA 57.486 29.630 0.00 0.00 44.59 1.75
2415 2602 7.117236 TGTGTTAGTAACGCTTTAGAATTCTGG 59.883 37.037 23.31 9.02 42.27 3.86
2424 2611 5.199024 TCCTGTGTGTTAGTAACGCTTTA 57.801 39.130 23.31 11.26 42.27 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.