>input_sequence_79876
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---------------------------------------------------------ATGGCCGCCGCCTCGCTGCTCCA
CCTCGCCACCCCCATCTCCTCCCCGCGCCTCCACCTCGGCCACAACTCCGCCACCAGCCTACCCCGCCGGCAGCATCACC
CGCAGGCCCGGCTGACGGCGGCGCCGCACCCGCCGCGGGCGCACCGGGTGACGATCGAGCACGGCGGCGAGTCGCGGGTG
GTGGAGATGGAGGAGGACGAGAACATCCTGGAGCGCGCGCTGGAGGAGGGGCTGGACGTGCCGCACGACTGCAAGCTCGG
GGTGTGCATGACCTGCCCGGCCCGGCTGGTGTCCGGCAGGGTGGACCAGAGCGACGGCATGCTCAGCGACGACGTGGTGG
CGCAGGGCTACGCGCTGCTCTGCGCCGCCTACCCGCGCTCCGACTGCACCATCCGCGTCATCCCCGAGGACGAGCTGCTC
CAGGTCCAGCTCGCCACCGCCAACGACTGA--------------------------------------------------
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>chr4D_1_TraesCS4D01G014200
ATGACGCCATGACGGCCATCGCCCACGAGCAAATGTTTGGTCACAACACGATCGTGGTTGGAACACCAACTAAACGATGG
CTCGCGGTCCTCATGGCCAGAGCACAACCACCGCTCGTGCGATGGGCACTGTAGCCCTAGGAGACAACAACCCAGCGTCG
CTGCTCCACCAGGATGAAGACCCCATAGTCCTTTCGGTGCTGATCCACCGTCACCTCGGGAAGGGCAGAGCGGTGGCGGG
GTAGATGAGAAGAGATTACCACACGTTGGGTGATGGAGAGGCCTTCCCAGTCGCGATGAGGGTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGGCCCCGCTTGATAACGGTGTATTTCTATACACTTGTATTTATT
TTACAGGTGTATAACACTGGCCACACTTGATTTTCATTTGAAAAGAAGAACGACCTATGAAGGTCTATAAATTTTACAAG
GGTATATGACGCTGTGAAACGCCAATCCAATCAGGCCTAAGTCTCTGATCAGATAGGCTATTCACTCATCACTCACACCT
CCACAATGGAGTAACATGAAACCTCCCGTGAGGCGGATCTAGCGGTTAAGAATGGATCCAAGAAGATAATGAGCGGCTCT
GATTACGCCAAGGCAAAGCGCGACAACACAACACAGCAGCACAGCGCCTTATCCTCTAGCTAGCA---------------
--CACCACCTGCCCTGCCGCGCGCACCGCACACGGACGCTGCTGAACCGGGCACGCCATGGCCGCCGCCTCGCTGCTCCA
CCTCGCCACCCCCATCTCCTCCCCGCGCCTCCACCTCGGCCACAACTCCGCCACCAGCCTACCCCGCCGGCAGCATCACC
CGCAGGCCCGGCTGACGGCGGCGCCGCACCCGCCGCGGGCGCACCGGGTGACGATCGAGCACGGCGGCGAGTCGCGGGTG
GTGGAGATGGAGGAGGACGAGAACATCCTGGAGCGCGCGCTGGAGGAGGGGCTGGACGTGCCGCACGACTGCAAGCTCGG
GGTGTGCATGACCTGCCCGGCCCGGCTGGTGTCCGGCAGGGTGGACCAGAGCGACGGCATGCTCAGCGACGACGTGGTGG
CGCAGGGCTACGCGCTGCTCTGCGCCGCCTACCCGCGCTCCGACTGCACCATCCGCGTCATCCCCGAGGACGAGCTGCTC
CAGGTCCAGCTCGCCACCGCCAACGACTGACCGACCCCTCCCCTCATCTTCCCACGCCGGCC-----------ACCTCGC
GCGGCGTCGATCGGCAGAGTTCATGTGCTCCGAGGCTTTGTACAATGTATTTCACCAGCCATTGCAATAAGATGTTTC-T
TTTTTTGCCTA-ATAATCAGTTGCTTCAGCTGTTGCCTGAACAATCTTCAAACATTCCTGCTTGTCATGCTTGAAACATT
GATTCGGCGATAACCGGAACATTAGCGAA--------------------------TCGAAAGATTTCATGTGAAGGCGAC
GAATCGAAAGATTTGATGAGCAAG-GGCACATCATTTGTGGTA-------------------------------------
---------------------------------------------------------------------------GTACT
AATTTAACTTGATGTTCTAACACACAGCACAGGTTCAGTACTTGAGTCTCAGACATGCATATCCATATTACAGGCATGGG
GAGCA----GATAGATATAGGTACCAAGGTCATTATTTATTTGGGAGTAACGCATGGCACCGGATGTTTTCTCTCAGATT
CTGCAGCTTCCATCATCTTCAGCCTCGAGGTGGGC-ATCACTGCCTGCAACCAAGCAAGCAAAATTTGT----TGGATCA
GTGTAAC-CAGTACTCAGATGC-AGAAAGAAAAACTGACAGTGCTTCAGCATA-----GCAGCCTAGCTGCTCCCTGCTT
AGTTTGCCGCAGCGGCGGCAGAAAACCGTCGGTACAATTTAAGCTCGGGAAATTCATTTCGGAAATGGTAGGTGCCGGCA
CAGCCTGCAATGGATTTTCAACTGCAACATCAGTTACTACTTACATGGGTGTCGCAGAAGTAGAAGGTGTTTCCTGCTCC
CAGCAGGTTACTTATCGCCTGGGCTCGAGCTTGTAACTTCTAGACCATTGCCTGCAGTAGAGGTAGAACCAAGCTGTCAG
TGATGGTTGAGGTGTGGATGTAGTAGGAATGGACTGCAGTACAAAGATTATATTGCAATAAACATGAAAAGACAGATGAA
AATGCACTCCATTTGTT-ATTCACAATCTTTGTTTCAGATACCAGAATTCTAAAGCGTTACTAACACACAGGAAATTCA
>chr4A_824
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-----------------------TCCCATGAGGCGGATCTAGCGGGTAAGAATGGATCGAGGAAGTAAATGAGCGGCCGT
GATTACACCAAGGCAAAGCGAGACAACACAGCAGAGCAGCACAGCGCCTTATCCTCTAGCTAGCA---------------
--CACCACCTGCCCTGCCCCGCGCACCGCACACAAACGCCGAG---CCGGGCACGCCATGGCCGCCGCTTCGCTGCTCCA
CCTCGCCACCCCCATCTCCTCCCCCCGCCTCCATCTCGGCCACAGCGCCGCCATCCTGCT------CGGCCGTCAGCATC
CGCAAGTGCGGCTGACGGCGGCGG------CGCCGCGGGCGCACCGGGTGACGATCGAGCACGGCGGCGAGTCGCGGGTG
GTGGAGATGGAGGAGGACGAGAACATCCTGGAGCGGGCGCTGGAGGAGGGGCTGGACGTGCCGCACGACTGCAAGCTCGG
GGTGTGCATGACCTGCCCGGCGCGGCTGGTGTCCGGCAAGGTGGACCAGAGCGACGGCATGCTCAGCGACGACGTGGTGG
CGCAGGGCTACGCGCTGCTCTGCGCCGCCTACCCGCGCTCCGACTGCACCATCCGCGTCATCCCCGAGGACGAGCTGCTC
CAGGTCCAGCTCGCCACCGCCAACGACTGACCGACCCCT-----CATCGCCTCACGCCGGCCGGCCGGCGGCCACCTCGC
GCGGCGTCGATCGGCAGAGTTCATGTGCTCCGAGGCTCTGTACAATGTATTTCACCAGCCATTACAATAAGATGCCCTTT
TTTTTTGCCTA-ATAATCAGTTGCTTCAGTTGTTGCCTGAACAATCTTTGCG--TTCCTGCTTGTTATGCTTGAAACATT
GGTTCAGCGATAACCGGAACATCAGCGAA--------------------------TCGAAAGATTTCATATGAAGG---C
GAATCGAAAGATTTGATGGGCAAGAAGCACATCATTTGTAGTACTCCCTCCGTCCGGAAATACTTGTTAGAGAAATGGAT
GTATCTAGACGCGTTTTAGTTTTAGATACATCCATTTTTACCCATTTCTTCGACAAGTATTTCCGGACGGAGGGAGTACT
AGTTTAACTTGATGTTCTAACACACAGCACAAGTTCAGTCTTGAGCCAG-AGACATGCATATCCAGATTACAAGCATGGG
GAGCA----GATAGATATAAGTAGTAAGGTCCTTATTTATTTCGGAGTAACGCATGGCACTGGATGTTTTCCCTCAAATT
CTGCAGCTTCCATCATCTTCAGTCTCGAGGTGGGC-ATCACTACCTGCAACCAAACAAGCAAAATAGATAATGTGGATCA
GTGTAAC-CGGTACTCATGTGCAAGAAAGAAAAACTGACAGCACTTCAGCATAGCATAGCAGCCTAACTGCTCCCTGCTT
-GTTTGCCGTGGCAGCTGCGAAAAACCGCCGATGCAATTTAAGCTCGGGAAATTGGTTTCGGAAATGGTAGGCGCCGGCA
CAGCTTGCAATGGATTCTCAACTGCAACATCAGTTACCACTTACATGGGTGTCGCAGAAGTAGAAGGTGTTTCCTGCTCC
CAGCAGGTTACTTATCGCCTGGGCTCGAGCTTGTGACTTCTAGACCATTGCCTGCGGTAGAGGCAGAACCAAGCTGTCAA
TGATGGTTGAGGTGTGGATGTTGTTGGAATGGACTGCAGTACAGATTATACGCAGCGAG---CATGAAAAGACAGATGAA
AATGCAGTCCATTTGTCAATTCACAATTCTTGTTTCAGATATCAGAATTACAAAGCGTTACTAGTACACAGGAAATTCA
>chr4B_832
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-------------------------------GGCGGATCTAGCGCGTAAGAACGGATGCAGGAAGATAATGAGCGGCTGT
GATTACACCCAGGCAAAGCGAGACAGCACAGCA---CAGCACAGCGCCTTATCCTCTAGGAGAGCACGCCTTGACGCTCC
GGCACCACCTGACCCGCCGCGCGCACCGCACACGGACGCTGCTGAACCGGGCACGCCATGGCCGCCGCCTCGCTGCTCCA
CCTCGCGACCCCCATCTCCTCCCCGCGCCCCCACCTCGGCCACAACGC------CCTGCC------CCGCCGGCACCACC
CGCGAGCGCGGCTGACGGCGG------------CGCGGGCGCACCGGGTGACGATCGAGCACGGCGGCGAGTCGCGGGTG
GTGGAGATGGAGGAGGAGGAGAACATCCTGGAGCGCGCGCTGGAGGAGGGGCTGGACGTGCCGCACGACTGCAAGCTCGG
GGTGTGCATGACCTGCCCGGCGCGGCTGGTGTCCGGCAGGGTGGACCAGAGCGACGGCATGCTCAGCGACGACGTGGTCG
CGCAGGGCTACGCGCTGCTCTGCGCCGCCTACCCGCGCTCCGACTGCACCATCCGCGTCATCCCCGAGGACGAGCTGCTC
CGGGTCCAGCTCGCCACCGCCAACGACTGACCCCCACC-----------CCTCACGCCGGCCGGCCGCCGGC--------
------------------GTTCATGTGCTCCAAGGCTTTGTACAATGTATCTCACAAGCCATTGCAATAAGAGATGCTTT
TTTTTGCCTAATATAATCAGCTGCTTCAGTTGTTGCCTGAACAATCTGTGAACATTCCTGCTTGTCATGCTTGAAACATT
GGTTCGGCGATAACCCGAACATCAGCGAAATCGAAAGATTTCATGCGAAGGCGAATCGACAGATTTGATGTGAAGG---C
GAATCGAAAGATTTGATGGGCGAG-AGCACATCATTTGTGATAC------------------------------------
---------------------------------------------------------------------------GTACT
AATTTAACTTGATGTTGTAACACACAGCACGAGTTCAGATTC--AGTCTCAGACATGCATATCCAGATTACAGGCATGGG
GAGCATATAGATAGATATAGGTAGCAAGGTCATTATTTATTTGGGAGTAGAGCATGGCACTGGATGTTTTCTCTCAGATA
-TGCAGCTTCCATCATCTTCAGCCTCGAGGTGGGTAATCACTACCTGCAACCAAGCAAGCAAAATTTGT----TGGATCA
GTGTAACCCAGTACTCACATGC-AGAAAGAAAAACTGACAGTGCTTCAGCATA-----ACAGCCTAGCAGCTCCCTGCTT
AGTTTGCCGCAGCGGCGGCGGAAAACCGCCGGTGCAATTTAAGCTCGGGGAATTCATTTCGGAAACGGTAGGCGCGGGCA
CAGCTTGCGATGGGTTTTCAACTGCAACATCAGTTGCTACTTACATGGGTGTCGCAGAAGTAGAAGGTGTTTCGTGCTCG
CGGCACGTTACTTGTCGCCTGGGCTCGAGCTTGTGACTTCTAGACCATTGCCTGCGGTAGAGGTAGAACCAAGCTGTCAA
CGATGGTTGAGGTGTGGATGCTGTTGGAATGGACTGCGGTACAAAGATTGTA-TGCAATAAACACGAAAAGACAGATGAA
GATGCAGTCCATTTGTCA-TTCACAATCTTTGTTTCAGATATCAGAATTCCAAAGAGTTAGTAACACACAGGAAATTCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----S-----------------S--------------S-----------------S-
------S-------------S---------S--S----------------------------------------------
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----------------------------------------------S------S-SSS--SSSSSS---S-S---S----
----S--S---------------SSSSSSS--------------------------------------------------
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---------------------S----------------------------------------------------------
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---------------------------------------SSSSS----SS-S----------------------------
---------------------------------------------------------------------------SSS--
-----------------------------S------------------SS------------------------------
-S--------------------S-----------------------------------------------------SSS-
------------------S------S------------------------------------------------------
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-------------------------------S-------SS-SS---------------------S--------------
-----------------------S------------------------------------S-------------------
------------------------------------------S-------------------------------------
-----------------S--------------------------------------------------------------
-------------------S--------S----S--------------------------------------S-------
----S---------------------------------------------------------------------------
----------------------------------S--------------------S-----------------------S
---------------------S--S---------------------------S---------------------------
------S---------S------------------------S--------S----------------------------
>forward_253
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-------------------------------------------------------------------------TGGCGGG
GTAGATGAGAAGA-------------------------------------------------------------------
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>reverse_1986
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-----------------------------------------------------------------TATTACAGGCATGGG
GAGCAG--------------------------------------------------------------------------
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