Multiple sequence alignment - TraesCS4B01G399400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G399400 chr4B 100.000 2612 0 0 1 2612 673475677 673473066 0.000000e+00 4824.0
1 TraesCS4B01G399400 chr4B 95.385 65 3 0 2044 2108 28618533 28618469 1.280000e-18 104.0
2 TraesCS4B01G399400 chr5A 87.284 1101 57 29 984 2020 707532493 707533574 0.000000e+00 1181.0
3 TraesCS4B01G399400 chr5A 92.807 570 9 12 2050 2609 707533572 707534119 0.000000e+00 797.0
4 TraesCS4B01G399400 chr5A 88.161 473 34 4 187 640 707531750 707532219 6.360000e-151 544.0
5 TraesCS4B01G399400 chr5A 91.667 60 5 0 2045 2104 11582293 11582352 1.670000e-12 84.2
6 TraesCS4B01G399400 chr4D 93.061 807 33 14 828 1618 491345483 491346282 0.000000e+00 1158.0
7 TraesCS4B01G399400 chr4D 93.271 535 15 7 1925 2458 491346862 491347376 0.000000e+00 769.0
8 TraesCS4B01G399400 chr4D 89.831 472 30 1 187 640 491344283 491344754 8.050000e-165 590.0
9 TraesCS4B01G399400 chr4D 87.660 235 4 10 1661 1877 491346343 491346570 1.550000e-62 250.0
10 TraesCS4B01G399400 chr4D 81.034 290 39 8 2170 2458 491347696 491347970 1.570000e-52 217.0
11 TraesCS4B01G399400 chr4D 89.222 167 3 4 2453 2612 491348055 491348213 7.380000e-46 195.0
12 TraesCS4B01G399400 chr4D 95.312 64 3 0 2044 2107 386984742 386984679 4.600000e-18 102.0
13 TraesCS4B01G399400 chr4D 81.373 102 9 9 2307 2407 491347705 491347797 1.000000e-09 75.0
14 TraesCS4B01G399400 chrUn 88.669 556 18 6 1063 1618 99637360 99637870 1.020000e-178 636.0
15 TraesCS4B01G399400 chrUn 93.171 410 11 6 2050 2458 99638649 99639042 1.040000e-163 586.0
16 TraesCS4B01G399400 chrUn 87.029 239 13 1 343 563 99636974 99637212 1.200000e-63 254.0
17 TraesCS4B01G399400 chrUn 95.425 153 2 2 1767 1919 99638153 99638300 3.360000e-59 239.0
18 TraesCS4B01G399400 chrUn 80.612 294 37 9 2170 2458 99639335 99639613 2.630000e-50 209.0
19 TraesCS4B01G399400 chrUn 89.820 167 2 4 2453 2612 99639698 99639856 1.590000e-47 200.0
20 TraesCS4B01G399400 chrUn 92.708 96 3 1 1925 2020 99638560 99638651 4.530000e-28 135.0
21 TraesCS4B01G399400 chrUn 81.373 102 9 9 2307 2407 99639344 99639436 1.000000e-09 75.0
22 TraesCS4B01G399400 chr1B 81.063 602 95 14 987 1586 356450624 356451208 1.830000e-126 462.0
23 TraesCS4B01G399400 chr1B 95.161 186 8 1 1 186 187782952 187782768 2.540000e-75 292.0
24 TraesCS4B01G399400 chr1B 92.857 196 13 1 1 195 327122357 327122552 1.530000e-72 283.0
25 TraesCS4B01G399400 chr1A 81.063 602 95 14 987 1586 330088380 330087796 1.830000e-126 462.0
26 TraesCS4B01G399400 chr1D 80.897 602 96 14 987 1586 256785095 256784511 8.520000e-125 457.0
27 TraesCS4B01G399400 chr1D 95.161 186 8 1 1 186 23392704 23392888 2.540000e-75 292.0
28 TraesCS4B01G399400 chr5B 96.237 186 7 0 1 186 381495254 381495069 3.270000e-79 305.0
29 TraesCS4B01G399400 chr5B 95.161 186 9 0 1 186 478562969 478563154 7.070000e-76 294.0
30 TraesCS4B01G399400 chr5B 93.782 193 11 1 1 193 237852003 237852194 3.290000e-74 289.0
31 TraesCS4B01G399400 chr3B 95.187 187 9 0 1 187 404006693 404006507 1.970000e-76 296.0
32 TraesCS4B01G399400 chr3B 100.000 33 0 0 1995 2027 691659616 691659584 7.810000e-06 62.1
33 TraesCS4B01G399400 chr2B 95.187 187 9 0 1 187 646395371 646395557 1.970000e-76 296.0
34 TraesCS4B01G399400 chr6B 94.241 191 10 1 1 190 159105431 159105241 9.140000e-75 291.0
35 TraesCS4B01G399400 chr6B 96.875 64 2 0 2044 2107 422321225 422321162 9.880000e-20 108.0
36 TraesCS4B01G399400 chr6B 88.679 53 2 1 1975 2027 106468656 106468704 7.810000e-06 62.1
37 TraesCS4B01G399400 chr2D 84.821 112 13 3 1995 2104 498106134 498106243 2.750000e-20 110.0
38 TraesCS4B01G399400 chr3A 95.522 67 3 0 2041 2107 420334933 420334999 9.880000e-20 108.0
39 TraesCS4B01G399400 chr3D 95.312 64 3 0 2044 2107 87926074 87926011 4.600000e-18 102.0
40 TraesCS4B01G399400 chr7A 100.000 31 0 0 1995 2025 420845235 420845265 1.010000e-04 58.4
41 TraesCS4B01G399400 chr2A 100.000 29 0 0 1997 2025 757964875 757964847 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G399400 chr4B 673473066 673475677 2611 True 4824.000000 4824 100.000000 1 2612 1 chr4B.!!$R2 2611
1 TraesCS4B01G399400 chr5A 707531750 707534119 2369 False 840.666667 1181 89.417333 187 2609 3 chr5A.!!$F2 2422
2 TraesCS4B01G399400 chr4D 491344283 491348213 3930 False 464.857143 1158 87.921714 187 2612 7 chr4D.!!$F1 2425
3 TraesCS4B01G399400 chrUn 99636974 99639856 2882 False 291.750000 636 88.600875 343 2612 8 chrUn.!!$F1 2269
4 TraesCS4B01G399400 chr1B 356450624 356451208 584 False 462.000000 462 81.063000 987 1586 1 chr1B.!!$F2 599
5 TraesCS4B01G399400 chr1A 330087796 330088380 584 True 462.000000 462 81.063000 987 1586 1 chr1A.!!$R1 599
6 TraesCS4B01G399400 chr1D 256784511 256785095 584 True 457.000000 457 80.897000 987 1586 1 chr1D.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 1300 0.032515 TGACTTGAGGGATCGGCCTA 60.033 55.0 0.0 0.0 36.66 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 4490 0.251832 TGTCCTGGACTCTCCACTCC 60.252 60.0 26.03 0.0 42.67 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.915536 GGCTATCCTACGACTCAAATCC 58.084 50.000 0.00 0.00 0.00 3.01
22 23 3.321111 GGCTATCCTACGACTCAAATCCA 59.679 47.826 0.00 0.00 0.00 3.41
23 24 4.299978 GCTATCCTACGACTCAAATCCAC 58.700 47.826 0.00 0.00 0.00 4.02
24 25 3.821421 ATCCTACGACTCAAATCCACC 57.179 47.619 0.00 0.00 0.00 4.61
25 26 2.531771 TCCTACGACTCAAATCCACCA 58.468 47.619 0.00 0.00 0.00 4.17
26 27 2.901192 TCCTACGACTCAAATCCACCAA 59.099 45.455 0.00 0.00 0.00 3.67
27 28 3.325425 TCCTACGACTCAAATCCACCAAA 59.675 43.478 0.00 0.00 0.00 3.28
28 29 4.069304 CCTACGACTCAAATCCACCAAAA 58.931 43.478 0.00 0.00 0.00 2.44
29 30 4.154195 CCTACGACTCAAATCCACCAAAAG 59.846 45.833 0.00 0.00 0.00 2.27
30 31 3.815809 ACGACTCAAATCCACCAAAAGA 58.184 40.909 0.00 0.00 0.00 2.52
31 32 3.815401 ACGACTCAAATCCACCAAAAGAG 59.185 43.478 0.00 0.00 0.00 2.85
32 33 4.065088 CGACTCAAATCCACCAAAAGAGA 58.935 43.478 0.00 0.00 0.00 3.10
33 34 4.083802 CGACTCAAATCCACCAAAAGAGAC 60.084 45.833 0.00 0.00 0.00 3.36
34 35 3.815401 ACTCAAATCCACCAAAAGAGACG 59.185 43.478 0.00 0.00 0.00 4.18
35 36 3.815401 CTCAAATCCACCAAAAGAGACGT 59.185 43.478 0.00 0.00 0.00 4.34
36 37 4.963373 TCAAATCCACCAAAAGAGACGTA 58.037 39.130 0.00 0.00 0.00 3.57
37 38 4.994852 TCAAATCCACCAAAAGAGACGTAG 59.005 41.667 0.00 0.00 0.00 3.51
38 39 4.884668 AATCCACCAAAAGAGACGTAGA 57.115 40.909 0.00 0.00 0.00 2.59
39 40 4.884668 ATCCACCAAAAGAGACGTAGAA 57.115 40.909 0.00 0.00 0.00 2.10
40 41 3.986277 TCCACCAAAAGAGACGTAGAAC 58.014 45.455 0.00 0.00 0.00 3.01
41 42 3.385433 TCCACCAAAAGAGACGTAGAACA 59.615 43.478 0.00 0.00 0.00 3.18
42 43 3.493503 CCACCAAAAGAGACGTAGAACAC 59.506 47.826 0.00 0.00 0.00 3.32
43 44 3.493503 CACCAAAAGAGACGTAGAACACC 59.506 47.826 0.00 0.00 0.00 4.16
44 45 3.133362 ACCAAAAGAGACGTAGAACACCA 59.867 43.478 0.00 0.00 0.00 4.17
45 46 3.493503 CCAAAAGAGACGTAGAACACCAC 59.506 47.826 0.00 0.00 0.00 4.16
46 47 3.382048 AAAGAGACGTAGAACACCACC 57.618 47.619 0.00 0.00 0.00 4.61
47 48 2.289592 AGAGACGTAGAACACCACCT 57.710 50.000 0.00 0.00 0.00 4.00
48 49 2.595238 AGAGACGTAGAACACCACCTT 58.405 47.619 0.00 0.00 0.00 3.50
49 50 2.557490 AGAGACGTAGAACACCACCTTC 59.443 50.000 0.00 0.00 0.00 3.46
50 51 2.557490 GAGACGTAGAACACCACCTTCT 59.443 50.000 0.00 0.00 0.00 2.85
51 52 2.963782 AGACGTAGAACACCACCTTCTT 59.036 45.455 0.00 0.00 0.00 2.52
52 53 3.005578 AGACGTAGAACACCACCTTCTTC 59.994 47.826 0.00 0.00 0.00 2.87
53 54 2.696707 ACGTAGAACACCACCTTCTTCA 59.303 45.455 0.00 0.00 0.00 3.02
54 55 3.133362 ACGTAGAACACCACCTTCTTCAA 59.867 43.478 0.00 0.00 0.00 2.69
55 56 4.124238 CGTAGAACACCACCTTCTTCAAA 58.876 43.478 0.00 0.00 0.00 2.69
56 57 4.573201 CGTAGAACACCACCTTCTTCAAAA 59.427 41.667 0.00 0.00 0.00 2.44
57 58 5.277345 CGTAGAACACCACCTTCTTCAAAAG 60.277 44.000 0.00 0.00 0.00 2.27
58 59 4.600062 AGAACACCACCTTCTTCAAAAGT 58.400 39.130 0.00 0.00 0.00 2.66
59 60 4.640647 AGAACACCACCTTCTTCAAAAGTC 59.359 41.667 0.00 0.00 0.00 3.01
60 61 4.236527 ACACCACCTTCTTCAAAAGTCT 57.763 40.909 0.00 0.00 0.00 3.24
61 62 4.600062 ACACCACCTTCTTCAAAAGTCTT 58.400 39.130 0.00 0.00 0.00 3.01
62 63 4.640647 ACACCACCTTCTTCAAAAGTCTTC 59.359 41.667 0.00 0.00 0.00 2.87
63 64 3.877508 ACCACCTTCTTCAAAAGTCTTCG 59.122 43.478 0.00 0.00 0.00 3.79
64 65 4.127171 CCACCTTCTTCAAAAGTCTTCGA 58.873 43.478 0.00 0.00 0.00 3.71
65 66 4.212214 CCACCTTCTTCAAAAGTCTTCGAG 59.788 45.833 0.00 0.00 0.00 4.04
66 67 4.212214 CACCTTCTTCAAAAGTCTTCGAGG 59.788 45.833 0.00 0.00 0.00 4.63
67 68 3.748568 CCTTCTTCAAAAGTCTTCGAGGG 59.251 47.826 0.00 0.00 0.00 4.30
68 69 3.402628 TCTTCAAAAGTCTTCGAGGGG 57.597 47.619 0.00 0.00 0.00 4.79
69 70 2.704065 TCTTCAAAAGTCTTCGAGGGGT 59.296 45.455 0.00 0.00 0.00 4.95
70 71 3.899360 TCTTCAAAAGTCTTCGAGGGGTA 59.101 43.478 0.00 0.00 0.00 3.69
71 72 3.672767 TCAAAAGTCTTCGAGGGGTAC 57.327 47.619 0.00 0.00 0.00 3.34
86 87 1.842720 GGTACCAAACCGTTTTGTGC 58.157 50.000 7.15 8.84 40.61 4.57
87 88 1.536496 GGTACCAAACCGTTTTGTGCC 60.536 52.381 16.18 16.18 40.61 5.01
88 89 1.406180 GTACCAAACCGTTTTGTGCCT 59.594 47.619 10.26 0.00 40.61 4.75
89 90 1.765230 ACCAAACCGTTTTGTGCCTA 58.235 45.000 4.66 0.00 40.61 3.93
90 91 1.679153 ACCAAACCGTTTTGTGCCTAG 59.321 47.619 4.66 0.00 40.61 3.02
91 92 1.679153 CCAAACCGTTTTGTGCCTAGT 59.321 47.619 4.66 0.00 40.61 2.57
92 93 2.542824 CCAAACCGTTTTGTGCCTAGTG 60.543 50.000 4.66 0.00 40.61 2.74
93 94 2.335316 AACCGTTTTGTGCCTAGTGA 57.665 45.000 0.00 0.00 0.00 3.41
94 95 1.589803 ACCGTTTTGTGCCTAGTGAC 58.410 50.000 0.00 0.00 0.00 3.67
95 96 0.511221 CCGTTTTGTGCCTAGTGACG 59.489 55.000 0.00 0.00 0.00 4.35
96 97 1.493772 CGTTTTGTGCCTAGTGACGA 58.506 50.000 0.00 0.00 0.00 4.20
97 98 1.862201 CGTTTTGTGCCTAGTGACGAA 59.138 47.619 0.00 0.00 0.00 3.85
98 99 2.096909 CGTTTTGTGCCTAGTGACGAAG 60.097 50.000 0.00 0.00 0.00 3.79
99 100 1.508632 TTTGTGCCTAGTGACGAAGC 58.491 50.000 0.00 0.00 0.00 3.86
100 101 0.666274 TTGTGCCTAGTGACGAAGCG 60.666 55.000 0.00 0.00 0.00 4.68
101 102 1.211969 GTGCCTAGTGACGAAGCGA 59.788 57.895 0.00 0.00 0.00 4.93
102 103 0.179134 GTGCCTAGTGACGAAGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
103 104 0.530744 TGCCTAGTGACGAAGCGATT 59.469 50.000 0.00 0.00 0.00 3.34
104 105 0.924090 GCCTAGTGACGAAGCGATTG 59.076 55.000 0.00 0.00 0.00 2.67
105 106 1.469251 GCCTAGTGACGAAGCGATTGA 60.469 52.381 0.00 0.00 0.00 2.57
106 107 2.876091 CCTAGTGACGAAGCGATTGAA 58.124 47.619 0.00 0.00 0.00 2.69
107 108 3.250744 CCTAGTGACGAAGCGATTGAAA 58.749 45.455 0.00 0.00 0.00 2.69
108 109 3.865745 CCTAGTGACGAAGCGATTGAAAT 59.134 43.478 0.00 0.00 0.00 2.17
109 110 5.041287 CCTAGTGACGAAGCGATTGAAATA 58.959 41.667 0.00 0.00 0.00 1.40
110 111 4.842139 AGTGACGAAGCGATTGAAATAC 57.158 40.909 0.00 0.00 0.00 1.89
111 112 4.495422 AGTGACGAAGCGATTGAAATACT 58.505 39.130 0.00 0.00 0.00 2.12
112 113 4.563184 AGTGACGAAGCGATTGAAATACTC 59.437 41.667 0.00 0.00 0.00 2.59
113 114 4.326278 GTGACGAAGCGATTGAAATACTCA 59.674 41.667 0.00 0.00 0.00 3.41
127 128 8.697846 TTGAAATACTCAAGGTACACGATTAG 57.302 34.615 0.00 0.00 39.20 1.73
128 129 7.833786 TGAAATACTCAAGGTACACGATTAGT 58.166 34.615 0.00 0.00 32.72 2.24
129 130 7.972277 TGAAATACTCAAGGTACACGATTAGTC 59.028 37.037 0.00 0.00 32.72 2.59
130 131 4.715527 ACTCAAGGTACACGATTAGTCC 57.284 45.455 0.00 0.00 0.00 3.85
131 132 3.128242 ACTCAAGGTACACGATTAGTCCG 59.872 47.826 0.00 0.00 0.00 4.79
132 133 2.159338 TCAAGGTACACGATTAGTCCGC 60.159 50.000 0.00 0.00 0.00 5.54
133 134 1.466856 AGGTACACGATTAGTCCGCA 58.533 50.000 0.00 0.00 0.00 5.69
134 135 1.820519 AGGTACACGATTAGTCCGCAA 59.179 47.619 0.00 0.00 0.00 4.85
135 136 2.231964 AGGTACACGATTAGTCCGCAAA 59.768 45.455 0.00 0.00 0.00 3.68
136 137 2.995258 GGTACACGATTAGTCCGCAAAA 59.005 45.455 0.00 0.00 0.00 2.44
137 138 3.061697 GGTACACGATTAGTCCGCAAAAG 59.938 47.826 0.00 0.00 0.00 2.27
138 139 1.463444 ACACGATTAGTCCGCAAAAGC 59.537 47.619 0.00 0.00 0.00 3.51
139 140 1.463056 CACGATTAGTCCGCAAAAGCA 59.537 47.619 0.00 0.00 0.00 3.91
140 141 2.095853 CACGATTAGTCCGCAAAAGCAT 59.904 45.455 0.00 0.00 0.00 3.79
141 142 2.747446 ACGATTAGTCCGCAAAAGCATT 59.253 40.909 0.00 0.00 0.00 3.56
142 143 3.100817 CGATTAGTCCGCAAAAGCATTG 58.899 45.455 0.00 0.00 0.00 2.82
143 144 3.426159 CGATTAGTCCGCAAAAGCATTGT 60.426 43.478 4.47 0.00 0.00 2.71
144 145 3.552604 TTAGTCCGCAAAAGCATTGTC 57.447 42.857 4.47 0.00 0.00 3.18
145 146 1.317613 AGTCCGCAAAAGCATTGTCA 58.682 45.000 4.47 0.00 0.00 3.58
146 147 1.888512 AGTCCGCAAAAGCATTGTCAT 59.111 42.857 4.47 0.00 0.00 3.06
147 148 2.095059 AGTCCGCAAAAGCATTGTCATC 60.095 45.455 4.47 0.00 0.00 2.92
148 149 1.885233 TCCGCAAAAGCATTGTCATCA 59.115 42.857 4.47 0.00 0.00 3.07
149 150 2.295629 TCCGCAAAAGCATTGTCATCAA 59.704 40.909 4.47 0.00 37.98 2.57
150 151 3.056678 TCCGCAAAAGCATTGTCATCAAT 60.057 39.130 4.47 0.00 44.02 2.57
151 152 3.305094 CCGCAAAAGCATTGTCATCAATC 59.695 43.478 4.47 0.00 41.66 2.67
152 153 3.921630 CGCAAAAGCATTGTCATCAATCA 59.078 39.130 4.47 0.00 41.66 2.57
153 154 4.201551 CGCAAAAGCATTGTCATCAATCAC 60.202 41.667 4.47 0.00 41.66 3.06
154 155 4.092383 GCAAAAGCATTGTCATCAATCACC 59.908 41.667 4.47 0.00 41.66 4.02
155 156 5.231702 CAAAAGCATTGTCATCAATCACCA 58.768 37.500 0.00 0.00 41.66 4.17
156 157 5.471556 AAAGCATTGTCATCAATCACCAA 57.528 34.783 0.00 0.00 41.66 3.67
157 158 5.471556 AAGCATTGTCATCAATCACCAAA 57.528 34.783 0.00 0.00 41.66 3.28
158 159 5.471556 AGCATTGTCATCAATCACCAAAA 57.528 34.783 0.00 0.00 41.66 2.44
159 160 5.232463 AGCATTGTCATCAATCACCAAAAC 58.768 37.500 0.00 0.00 41.66 2.43
160 161 4.989797 GCATTGTCATCAATCACCAAAACA 59.010 37.500 0.00 0.00 41.66 2.83
161 162 5.107375 GCATTGTCATCAATCACCAAAACAC 60.107 40.000 0.00 0.00 41.66 3.32
162 163 4.582701 TGTCATCAATCACCAAAACACC 57.417 40.909 0.00 0.00 0.00 4.16
163 164 4.214310 TGTCATCAATCACCAAAACACCT 58.786 39.130 0.00 0.00 0.00 4.00
164 165 4.648762 TGTCATCAATCACCAAAACACCTT 59.351 37.500 0.00 0.00 0.00 3.50
165 166 5.830457 TGTCATCAATCACCAAAACACCTTA 59.170 36.000 0.00 0.00 0.00 2.69
166 167 6.016360 TGTCATCAATCACCAAAACACCTTAG 60.016 38.462 0.00 0.00 0.00 2.18
167 168 5.476599 TCATCAATCACCAAAACACCTTAGG 59.523 40.000 0.00 0.00 0.00 2.69
168 169 5.055265 TCAATCACCAAAACACCTTAGGA 57.945 39.130 4.77 0.00 0.00 2.94
169 170 5.450453 TCAATCACCAAAACACCTTAGGAA 58.550 37.500 4.77 0.00 0.00 3.36
170 171 6.074648 TCAATCACCAAAACACCTTAGGAAT 58.925 36.000 4.77 0.00 0.00 3.01
171 172 7.235079 TCAATCACCAAAACACCTTAGGAATA 58.765 34.615 4.77 0.00 0.00 1.75
172 173 7.726291 TCAATCACCAAAACACCTTAGGAATAA 59.274 33.333 4.77 0.00 0.00 1.40
173 174 8.364142 CAATCACCAAAACACCTTAGGAATAAA 58.636 33.333 4.77 0.00 0.00 1.40
174 175 8.664669 ATCACCAAAACACCTTAGGAATAAAT 57.335 30.769 4.77 0.00 0.00 1.40
175 176 9.762381 ATCACCAAAACACCTTAGGAATAAATA 57.238 29.630 4.77 0.00 0.00 1.40
176 177 9.762381 TCACCAAAACACCTTAGGAATAAATAT 57.238 29.630 4.77 0.00 0.00 1.28
177 178 9.801873 CACCAAAACACCTTAGGAATAAATATG 57.198 33.333 4.77 0.00 0.00 1.78
178 179 8.474831 ACCAAAACACCTTAGGAATAAATATGC 58.525 33.333 4.77 0.00 0.00 3.14
179 180 7.926018 CCAAAACACCTTAGGAATAAATATGCC 59.074 37.037 4.77 0.00 0.00 4.40
180 181 7.597288 AAACACCTTAGGAATAAATATGCCC 57.403 36.000 4.77 0.00 31.11 5.36
181 182 6.530601 ACACCTTAGGAATAAATATGCCCT 57.469 37.500 4.77 0.00 31.11 5.19
182 183 6.922540 ACACCTTAGGAATAAATATGCCCTT 58.077 36.000 4.77 0.00 31.11 3.95
183 184 8.052621 ACACCTTAGGAATAAATATGCCCTTA 57.947 34.615 4.77 0.00 31.11 2.69
184 185 7.942894 ACACCTTAGGAATAAATATGCCCTTAC 59.057 37.037 4.77 0.00 31.11 2.34
185 186 7.942341 CACCTTAGGAATAAATATGCCCTTACA 59.058 37.037 4.77 0.00 31.11 2.41
199 200 3.414269 CCCTTACACACGGTTTAATGGT 58.586 45.455 0.00 0.00 0.00 3.55
207 208 7.690952 ACACACGGTTTAATGGTATAACATT 57.309 32.000 19.53 19.53 43.13 2.71
223 224 2.430465 ACATTGACACACATGGCTCTC 58.570 47.619 0.00 0.00 33.48 3.20
237 238 1.028905 GCTCTCGCATCCTCACTACT 58.971 55.000 0.00 0.00 35.78 2.57
258 259 2.150837 GTGCGTCGCCGAGAAGTAC 61.151 63.158 15.88 0.00 36.91 2.73
262 263 3.057548 TCGCCGAGAAGTACGCCA 61.058 61.111 0.00 0.00 0.00 5.69
302 303 0.327924 CATTGTGGCACCCTCTACCA 59.672 55.000 16.26 0.00 0.00 3.25
310 311 1.202348 GCACCCTCTACCAAACAATGC 59.798 52.381 0.00 0.00 0.00 3.56
313 314 2.158385 ACCCTCTACCAAACAATGCCAA 60.158 45.455 0.00 0.00 0.00 4.52
333 334 2.263741 GGCAATCCCCTAGCATGCG 61.264 63.158 13.01 0.00 37.88 4.73
368 369 2.046988 CAGTGCATGGAGCCACGA 60.047 61.111 0.00 0.00 44.83 4.35
377 378 2.280119 GAGCCACGACAGTGCACA 60.280 61.111 21.04 0.00 46.62 4.57
446 465 1.457346 AGAGCACTTACATGGCAAGC 58.543 50.000 8.74 1.17 0.00 4.01
483 503 2.306847 GGTGACATGTCAGTGGGTTTT 58.693 47.619 28.54 0.00 40.75 2.43
486 506 2.751479 TGACATGTCAGTGGGTTTTCCC 60.751 50.000 24.56 0.00 46.73 3.97
487 507 5.037179 TGACATGTCAGTGGGTTTTCCCT 62.037 47.826 24.56 0.00 46.70 4.20
488 508 6.470681 TGACATGTCAGTGGGTTTTCCCTT 62.471 45.833 24.56 0.00 46.70 3.95
505 525 3.053245 TCCCTTCTTTCTGGTTTTGGACA 60.053 43.478 0.00 0.00 0.00 4.02
536 556 2.430694 CGGTATCAGAACATGAGGGACA 59.569 50.000 0.00 0.00 42.53 4.02
548 568 7.888021 AGAACATGAGGGACAAAATGTATGTAA 59.112 33.333 0.00 0.00 33.04 2.41
580 600 5.516044 AGGATAAGGGACCAAATGTTAACC 58.484 41.667 2.48 0.00 0.00 2.85
582 602 5.955959 GGATAAGGGACCAAATGTTAACCTT 59.044 40.000 2.48 0.00 38.55 3.50
586 606 4.062293 GGGACCAAATGTTAACCTTTTGC 58.938 43.478 18.65 7.78 37.05 3.68
655 1193 2.347114 CGGGAGGTGTGCATGTGA 59.653 61.111 0.00 0.00 0.00 3.58
656 1194 1.742880 CGGGAGGTGTGCATGTGAG 60.743 63.158 0.00 0.00 0.00 3.51
681 1219 0.036765 ACGGCCAGCTCACGAATAAA 60.037 50.000 2.24 0.00 0.00 1.40
683 1221 1.062587 CGGCCAGCTCACGAATAAAAG 59.937 52.381 2.24 0.00 0.00 2.27
684 1222 1.401905 GGCCAGCTCACGAATAAAAGG 59.598 52.381 0.00 0.00 0.00 3.11
685 1223 1.401905 GCCAGCTCACGAATAAAAGGG 59.598 52.381 0.00 0.00 0.00 3.95
686 1224 2.711542 CCAGCTCACGAATAAAAGGGT 58.288 47.619 0.00 0.00 0.00 4.34
687 1225 2.678336 CCAGCTCACGAATAAAAGGGTC 59.322 50.000 0.00 0.00 0.00 4.46
688 1226 2.348666 CAGCTCACGAATAAAAGGGTCG 59.651 50.000 0.00 0.00 40.56 4.79
693 1231 2.331194 ACGAATAAAAGGGTCGTGACG 58.669 47.619 0.00 0.00 45.65 4.35
694 1232 1.657094 CGAATAAAAGGGTCGTGACGG 59.343 52.381 4.70 0.00 0.00 4.79
696 1234 0.978907 ATAAAAGGGTCGTGACGGGT 59.021 50.000 4.70 0.00 0.00 5.28
698 1236 2.704342 AAAAGGGTCGTGACGGGTCG 62.704 60.000 4.70 0.00 0.00 4.79
726 1294 0.106967 GGGGCTTGACTTGAGGGATC 60.107 60.000 0.00 0.00 0.00 3.36
732 1300 0.032515 TGACTTGAGGGATCGGCCTA 60.033 55.000 0.00 0.00 36.66 3.93
734 1302 1.369321 CTTGAGGGATCGGCCTAGC 59.631 63.158 0.00 0.00 36.66 3.42
735 1303 2.105806 CTTGAGGGATCGGCCTAGCC 62.106 65.000 2.17 2.17 46.75 3.93
746 1314 1.617947 GGCCTAGCCTAGCACACACT 61.618 60.000 0.00 0.00 46.69 3.55
797 1365 2.486663 GGCCCGGCCCTTTTATTCG 61.487 63.158 18.83 0.00 44.06 3.34
802 1370 1.751544 GGCCCTTTTATTCGCCCGT 60.752 57.895 0.00 0.00 35.23 5.28
803 1371 1.431845 GCCCTTTTATTCGCCCGTG 59.568 57.895 0.00 0.00 0.00 4.94
804 1372 1.431845 CCCTTTTATTCGCCCGTGC 59.568 57.895 0.00 0.00 0.00 5.34
805 1373 1.029947 CCCTTTTATTCGCCCGTGCT 61.030 55.000 0.00 0.00 34.43 4.40
811 1394 2.813226 TATTCGCCCGTGCTGCCTTT 62.813 55.000 0.00 0.00 34.43 3.11
830 1413 0.482446 TTTCACCATGGGCCTTGAGT 59.518 50.000 20.21 13.08 0.00 3.41
867 1481 3.549730 GCTTTGGCCTTTGGGTGT 58.450 55.556 3.32 0.00 34.45 4.16
885 1499 4.452733 GCCCCCTCTCCACGAACG 62.453 72.222 0.00 0.00 0.00 3.95
887 1501 2.572284 CCCCTCTCCACGAACGAC 59.428 66.667 0.14 0.00 0.00 4.34
889 1503 2.330372 CCCTCTCCACGAACGACGA 61.330 63.158 0.00 0.00 45.77 4.20
890 1504 1.154263 CCTCTCCACGAACGACGAC 60.154 63.158 0.00 0.00 45.77 4.34
891 1505 1.575576 CCTCTCCACGAACGACGACT 61.576 60.000 0.00 0.00 45.77 4.18
892 1506 0.452950 CTCTCCACGAACGACGACTG 60.453 60.000 0.00 0.00 45.77 3.51
893 1507 2.050714 TCCACGAACGACGACTGC 60.051 61.111 0.00 0.00 45.77 4.40
894 1508 2.050351 CCACGAACGACGACTGCT 60.050 61.111 0.00 0.00 45.77 4.24
895 1509 2.365068 CCACGAACGACGACTGCTG 61.365 63.158 0.00 0.00 45.77 4.41
896 1510 2.729862 ACGAACGACGACTGCTGC 60.730 61.111 0.00 0.00 45.77 5.25
897 1511 3.470567 CGAACGACGACTGCTGCC 61.471 66.667 0.00 0.00 45.77 4.85
899 1513 3.891586 GAACGACGACTGCTGCCGA 62.892 63.158 6.27 0.00 0.00 5.54
900 1514 3.493830 AACGACGACTGCTGCCGAA 62.494 57.895 6.27 0.00 0.00 4.30
902 1516 1.226575 CGACGACTGCTGCCGAATA 60.227 57.895 6.27 0.00 0.00 1.75
903 1517 0.595053 CGACGACTGCTGCCGAATAT 60.595 55.000 6.27 0.00 0.00 1.28
904 1518 1.334689 CGACGACTGCTGCCGAATATA 60.335 52.381 6.27 0.00 0.00 0.86
905 1519 2.052157 GACGACTGCTGCCGAATATAC 58.948 52.381 6.27 0.00 0.00 1.47
936 1564 1.151908 CCCAAACCGAAACCCTCCA 59.848 57.895 0.00 0.00 0.00 3.86
938 1566 1.176619 CCAAACCGAAACCCTCCACC 61.177 60.000 0.00 0.00 0.00 4.61
942 1570 2.351276 CGAAACCCTCCACCCCTG 59.649 66.667 0.00 0.00 0.00 4.45
943 1571 2.526046 CGAAACCCTCCACCCCTGT 61.526 63.158 0.00 0.00 0.00 4.00
973 1602 4.838152 CATCCCACGCCCACCTCG 62.838 72.222 0.00 0.00 0.00 4.63
1455 2096 0.033504 ACGACTGGATCAACAGCGTT 59.966 50.000 12.17 0.00 43.37 4.84
1605 2246 4.489771 CCCGCCCGCCTTCTGATT 62.490 66.667 0.00 0.00 0.00 2.57
1606 2247 3.204827 CCGCCCGCCTTCTGATTG 61.205 66.667 0.00 0.00 0.00 2.67
1607 2248 2.125147 CGCCCGCCTTCTGATTGA 60.125 61.111 0.00 0.00 0.00 2.57
1608 2249 1.524621 CGCCCGCCTTCTGATTGAT 60.525 57.895 0.00 0.00 0.00 2.57
1609 2250 1.097547 CGCCCGCCTTCTGATTGATT 61.098 55.000 0.00 0.00 0.00 2.57
1610 2251 0.383231 GCCCGCCTTCTGATTGATTG 59.617 55.000 0.00 0.00 0.00 2.67
1611 2252 2.018644 GCCCGCCTTCTGATTGATTGA 61.019 52.381 0.00 0.00 0.00 2.57
1612 2253 2.579873 CCCGCCTTCTGATTGATTGAT 58.420 47.619 0.00 0.00 0.00 2.57
1613 2254 2.954318 CCCGCCTTCTGATTGATTGATT 59.046 45.455 0.00 0.00 0.00 2.57
1614 2255 3.243301 CCCGCCTTCTGATTGATTGATTG 60.243 47.826 0.00 0.00 0.00 2.67
1615 2256 3.628942 CCGCCTTCTGATTGATTGATTGA 59.371 43.478 0.00 0.00 0.00 2.57
1616 2257 4.277672 CCGCCTTCTGATTGATTGATTGAT 59.722 41.667 0.00 0.00 0.00 2.57
1633 2274 9.626045 ATTGATTGATTGATTGATTGATCGATG 57.374 29.630 0.54 0.00 31.69 3.84
1643 2350 1.410850 TTGATCGATGCCCTCCTCCC 61.411 60.000 0.54 0.00 0.00 4.30
1660 2367 3.557824 CGCCGCCCGGTATTAATC 58.442 61.111 8.66 0.00 37.65 1.75
1661 2368 1.005394 CGCCGCCCGGTATTAATCT 60.005 57.895 8.66 0.00 37.65 2.40
1662 2369 1.012486 CGCCGCCCGGTATTAATCTC 61.012 60.000 8.66 0.00 37.65 2.75
1674 2411 6.936900 CCGGTATTAATCTCCTGTCATCAATT 59.063 38.462 0.00 0.00 0.00 2.32
1675 2412 7.095060 CCGGTATTAATCTCCTGTCATCAATTG 60.095 40.741 0.00 0.00 0.00 2.32
1700 2437 2.800629 CGAATCAATTGGCCAAGGATGC 60.801 50.000 27.08 24.84 0.00 3.91
1715 2452 5.352569 CCAAGGATGCAGTACTAGTTTCTTG 59.647 44.000 0.00 14.98 0.00 3.02
1923 2865 0.753848 TGTCGTGGGTGTCAGACTCA 60.754 55.000 1.31 0.00 34.92 3.41
1926 3122 2.230508 GTCGTGGGTGTCAGACTCAATA 59.769 50.000 1.31 0.00 36.55 1.90
1993 3189 5.818678 TGCTACTCCCTCTGTTTCTAAAA 57.181 39.130 0.00 0.00 0.00 1.52
1994 3190 6.182507 TGCTACTCCCTCTGTTTCTAAAAA 57.817 37.500 0.00 0.00 0.00 1.94
2144 3372 5.221283 TGCTTTGCTTCATGTCTGATGAAAA 60.221 36.000 0.00 0.00 37.55 2.29
2155 3386 6.266168 TGTCTGATGAAAATATTTTGCCGT 57.734 33.333 17.98 6.15 0.00 5.68
2287 3518 6.073003 AGCTTTTTGCATTCTACTACTCACAC 60.073 38.462 0.00 0.00 45.94 3.82
2333 3570 8.791327 TTCTCATCTTTCTGCACATGTTATTA 57.209 30.769 0.00 0.00 0.00 0.98
2334 3571 8.969260 TCTCATCTTTCTGCACATGTTATTAT 57.031 30.769 0.00 0.00 0.00 1.28
2335 3572 9.399797 TCTCATCTTTCTGCACATGTTATTATT 57.600 29.630 0.00 0.00 0.00 1.40
2414 3651 5.981088 TGAGCCTTTTTGCATTCTGATAA 57.019 34.783 0.00 0.00 0.00 1.75
2467 4394 6.718454 CACAATGGAATGCTCTTATCCCTATT 59.282 38.462 0.00 0.00 32.01 1.73
2556 4490 4.077063 TGTGTGCGTTTACATTATGCTG 57.923 40.909 0.00 0.00 32.43 4.41
2558 4492 3.126171 GTGTGCGTTTACATTATGCTGGA 59.874 43.478 0.00 0.00 32.43 3.86
2559 4493 3.373748 TGTGCGTTTACATTATGCTGGAG 59.626 43.478 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.321111 TGGATTTGAGTCGTAGGATAGCC 59.679 47.826 0.00 0.00 0.00 3.93
1 2 4.299978 GTGGATTTGAGTCGTAGGATAGC 58.700 47.826 0.00 0.00 0.00 2.97
2 3 4.341235 TGGTGGATTTGAGTCGTAGGATAG 59.659 45.833 0.00 0.00 0.00 2.08
3 4 4.283337 TGGTGGATTTGAGTCGTAGGATA 58.717 43.478 0.00 0.00 0.00 2.59
4 5 3.104512 TGGTGGATTTGAGTCGTAGGAT 58.895 45.455 0.00 0.00 0.00 3.24
5 6 2.531771 TGGTGGATTTGAGTCGTAGGA 58.468 47.619 0.00 0.00 0.00 2.94
6 7 3.328382 TTGGTGGATTTGAGTCGTAGG 57.672 47.619 0.00 0.00 0.00 3.18
7 8 4.994852 TCTTTTGGTGGATTTGAGTCGTAG 59.005 41.667 0.00 0.00 0.00 3.51
8 9 4.963373 TCTTTTGGTGGATTTGAGTCGTA 58.037 39.130 0.00 0.00 0.00 3.43
9 10 3.815401 CTCTTTTGGTGGATTTGAGTCGT 59.185 43.478 0.00 0.00 0.00 4.34
10 11 4.065088 TCTCTTTTGGTGGATTTGAGTCG 58.935 43.478 0.00 0.00 0.00 4.18
11 12 4.083802 CGTCTCTTTTGGTGGATTTGAGTC 60.084 45.833 0.00 0.00 0.00 3.36
12 13 3.815401 CGTCTCTTTTGGTGGATTTGAGT 59.185 43.478 0.00 0.00 0.00 3.41
13 14 3.815401 ACGTCTCTTTTGGTGGATTTGAG 59.185 43.478 0.00 0.00 0.00 3.02
14 15 3.815809 ACGTCTCTTTTGGTGGATTTGA 58.184 40.909 0.00 0.00 0.00 2.69
15 16 4.994852 TCTACGTCTCTTTTGGTGGATTTG 59.005 41.667 0.00 0.00 0.00 2.32
16 17 5.223449 TCTACGTCTCTTTTGGTGGATTT 57.777 39.130 0.00 0.00 0.00 2.17
17 18 4.884668 TCTACGTCTCTTTTGGTGGATT 57.115 40.909 0.00 0.00 0.00 3.01
18 19 4.039973 TGTTCTACGTCTCTTTTGGTGGAT 59.960 41.667 0.00 0.00 0.00 3.41
19 20 3.385433 TGTTCTACGTCTCTTTTGGTGGA 59.615 43.478 0.00 0.00 0.00 4.02
20 21 3.493503 GTGTTCTACGTCTCTTTTGGTGG 59.506 47.826 0.00 0.00 0.00 4.61
21 22 3.493503 GGTGTTCTACGTCTCTTTTGGTG 59.506 47.826 0.00 0.00 0.00 4.17
22 23 3.133362 TGGTGTTCTACGTCTCTTTTGGT 59.867 43.478 0.00 0.00 0.00 3.67
23 24 3.493503 GTGGTGTTCTACGTCTCTTTTGG 59.506 47.826 0.00 0.00 0.00 3.28
24 25 3.493503 GGTGGTGTTCTACGTCTCTTTTG 59.506 47.826 0.00 0.00 0.00 2.44
25 26 3.387050 AGGTGGTGTTCTACGTCTCTTTT 59.613 43.478 0.00 0.00 0.00 2.27
26 27 2.963782 AGGTGGTGTTCTACGTCTCTTT 59.036 45.455 0.00 0.00 0.00 2.52
27 28 2.595238 AGGTGGTGTTCTACGTCTCTT 58.405 47.619 0.00 0.00 0.00 2.85
28 29 2.289592 AGGTGGTGTTCTACGTCTCT 57.710 50.000 0.00 0.00 0.00 3.10
29 30 2.557490 AGAAGGTGGTGTTCTACGTCTC 59.443 50.000 0.00 0.00 32.29 3.36
30 31 2.595238 AGAAGGTGGTGTTCTACGTCT 58.405 47.619 0.00 0.00 32.29 4.18
31 32 3.243636 TGAAGAAGGTGGTGTTCTACGTC 60.244 47.826 0.00 0.00 32.93 4.34
32 33 2.696707 TGAAGAAGGTGGTGTTCTACGT 59.303 45.455 0.00 0.00 32.93 3.57
33 34 3.380479 TGAAGAAGGTGGTGTTCTACG 57.620 47.619 0.00 0.00 32.93 3.51
34 35 5.589050 ACTTTTGAAGAAGGTGGTGTTCTAC 59.411 40.000 0.00 0.00 32.93 2.59
35 36 5.751586 ACTTTTGAAGAAGGTGGTGTTCTA 58.248 37.500 0.00 0.00 32.93 2.10
36 37 4.600062 ACTTTTGAAGAAGGTGGTGTTCT 58.400 39.130 0.00 0.00 35.71 3.01
37 38 4.640647 AGACTTTTGAAGAAGGTGGTGTTC 59.359 41.667 0.00 0.00 0.00 3.18
38 39 4.600062 AGACTTTTGAAGAAGGTGGTGTT 58.400 39.130 0.00 0.00 0.00 3.32
39 40 4.236527 AGACTTTTGAAGAAGGTGGTGT 57.763 40.909 0.00 0.00 0.00 4.16
40 41 4.260784 CGAAGACTTTTGAAGAAGGTGGTG 60.261 45.833 0.00 0.00 0.00 4.17
41 42 3.877508 CGAAGACTTTTGAAGAAGGTGGT 59.122 43.478 0.00 0.00 0.00 4.16
42 43 4.127171 TCGAAGACTTTTGAAGAAGGTGG 58.873 43.478 0.00 0.00 0.00 4.61
43 44 4.212214 CCTCGAAGACTTTTGAAGAAGGTG 59.788 45.833 0.00 0.00 0.00 4.00
44 45 4.381411 CCTCGAAGACTTTTGAAGAAGGT 58.619 43.478 0.00 0.00 0.00 3.50
45 46 3.748568 CCCTCGAAGACTTTTGAAGAAGG 59.251 47.826 0.00 0.00 0.00 3.46
46 47 3.748568 CCCCTCGAAGACTTTTGAAGAAG 59.251 47.826 0.00 0.00 0.00 2.85
47 48 3.135895 ACCCCTCGAAGACTTTTGAAGAA 59.864 43.478 0.00 0.00 0.00 2.52
48 49 2.704065 ACCCCTCGAAGACTTTTGAAGA 59.296 45.455 0.00 0.00 0.00 2.87
49 50 3.127425 ACCCCTCGAAGACTTTTGAAG 57.873 47.619 0.00 0.00 0.00 3.02
50 51 3.244318 GGTACCCCTCGAAGACTTTTGAA 60.244 47.826 0.00 0.00 0.00 2.69
51 52 2.301009 GGTACCCCTCGAAGACTTTTGA 59.699 50.000 0.00 0.00 0.00 2.69
52 53 2.038033 TGGTACCCCTCGAAGACTTTTG 59.962 50.000 10.07 0.00 0.00 2.44
53 54 2.332117 TGGTACCCCTCGAAGACTTTT 58.668 47.619 10.07 0.00 0.00 2.27
54 55 2.019807 TGGTACCCCTCGAAGACTTT 57.980 50.000 10.07 0.00 0.00 2.66
55 56 2.019807 TTGGTACCCCTCGAAGACTT 57.980 50.000 10.07 0.00 0.00 3.01
56 57 1.622312 GTTTGGTACCCCTCGAAGACT 59.378 52.381 10.07 0.00 0.00 3.24
57 58 1.338484 GGTTTGGTACCCCTCGAAGAC 60.338 57.143 10.07 0.00 41.43 3.01
58 59 0.978907 GGTTTGGTACCCCTCGAAGA 59.021 55.000 10.07 0.00 41.43 2.87
59 60 0.390735 CGGTTTGGTACCCCTCGAAG 60.391 60.000 10.07 0.00 44.70 3.79
60 61 1.120795 ACGGTTTGGTACCCCTCGAA 61.121 55.000 10.07 0.00 44.70 3.71
61 62 1.120795 AACGGTTTGGTACCCCTCGA 61.121 55.000 10.07 0.00 44.70 4.04
62 63 0.250424 AAACGGTTTGGTACCCCTCG 60.250 55.000 10.07 10.60 44.70 4.63
63 64 1.610038 CAAAACGGTTTGGTACCCCTC 59.390 52.381 18.34 0.00 44.70 4.30
64 65 1.694844 CAAAACGGTTTGGTACCCCT 58.305 50.000 18.34 0.00 44.70 4.79
73 74 2.356695 GTCACTAGGCACAAAACGGTTT 59.643 45.455 0.00 0.00 0.00 3.27
74 75 1.944709 GTCACTAGGCACAAAACGGTT 59.055 47.619 0.00 0.00 0.00 4.44
75 76 1.589803 GTCACTAGGCACAAAACGGT 58.410 50.000 0.00 0.00 0.00 4.83
76 77 0.511221 CGTCACTAGGCACAAAACGG 59.489 55.000 0.00 0.00 0.00 4.44
77 78 1.493772 TCGTCACTAGGCACAAAACG 58.506 50.000 0.00 0.00 0.00 3.60
78 79 2.349532 GCTTCGTCACTAGGCACAAAAC 60.350 50.000 0.00 0.00 0.00 2.43
79 80 1.871039 GCTTCGTCACTAGGCACAAAA 59.129 47.619 0.00 0.00 0.00 2.44
80 81 1.508632 GCTTCGTCACTAGGCACAAA 58.491 50.000 0.00 0.00 0.00 2.83
81 82 0.666274 CGCTTCGTCACTAGGCACAA 60.666 55.000 0.00 0.00 0.00 3.33
82 83 1.080772 CGCTTCGTCACTAGGCACA 60.081 57.895 0.00 0.00 0.00 4.57
83 84 0.179134 ATCGCTTCGTCACTAGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
84 85 0.530744 AATCGCTTCGTCACTAGGCA 59.469 50.000 0.00 0.00 0.00 4.75
85 86 0.924090 CAATCGCTTCGTCACTAGGC 59.076 55.000 0.00 0.00 0.00 3.93
86 87 2.561733 TCAATCGCTTCGTCACTAGG 57.438 50.000 0.00 0.00 0.00 3.02
87 88 5.744345 AGTATTTCAATCGCTTCGTCACTAG 59.256 40.000 0.00 0.00 0.00 2.57
88 89 5.647589 AGTATTTCAATCGCTTCGTCACTA 58.352 37.500 0.00 0.00 0.00 2.74
89 90 4.495422 AGTATTTCAATCGCTTCGTCACT 58.505 39.130 0.00 0.00 0.00 3.41
90 91 4.326278 TGAGTATTTCAATCGCTTCGTCAC 59.674 41.667 0.00 0.00 31.34 3.67
91 92 4.490743 TGAGTATTTCAATCGCTTCGTCA 58.509 39.130 0.00 0.00 31.34 4.35
92 93 5.450376 TTGAGTATTTCAATCGCTTCGTC 57.550 39.130 0.00 0.00 40.82 4.20
93 94 4.330074 CCTTGAGTATTTCAATCGCTTCGT 59.670 41.667 0.00 0.00 44.48 3.85
94 95 4.330074 ACCTTGAGTATTTCAATCGCTTCG 59.670 41.667 0.00 0.00 44.48 3.79
95 96 5.803020 ACCTTGAGTATTTCAATCGCTTC 57.197 39.130 0.00 0.00 44.48 3.86
96 97 6.092259 GTGTACCTTGAGTATTTCAATCGCTT 59.908 38.462 0.00 0.00 44.48 4.68
97 98 5.581085 GTGTACCTTGAGTATTTCAATCGCT 59.419 40.000 0.00 0.00 44.48 4.93
98 99 5.500290 CGTGTACCTTGAGTATTTCAATCGC 60.500 44.000 0.00 0.00 44.48 4.58
99 100 5.803461 TCGTGTACCTTGAGTATTTCAATCG 59.197 40.000 0.00 0.00 44.48 3.34
100 101 7.772332 ATCGTGTACCTTGAGTATTTCAATC 57.228 36.000 0.00 0.00 44.48 2.67
101 102 9.314321 CTAATCGTGTACCTTGAGTATTTCAAT 57.686 33.333 0.00 0.00 44.48 2.57
102 103 8.308931 ACTAATCGTGTACCTTGAGTATTTCAA 58.691 33.333 0.00 0.00 43.40 2.69
103 104 7.833786 ACTAATCGTGTACCTTGAGTATTTCA 58.166 34.615 0.00 0.00 32.28 2.69
104 105 7.434602 GGACTAATCGTGTACCTTGAGTATTTC 59.565 40.741 0.00 0.00 32.28 2.17
105 106 7.263496 GGACTAATCGTGTACCTTGAGTATTT 58.737 38.462 0.00 0.00 32.28 1.40
106 107 6.459298 CGGACTAATCGTGTACCTTGAGTATT 60.459 42.308 0.00 0.00 32.28 1.89
107 108 5.008415 CGGACTAATCGTGTACCTTGAGTAT 59.992 44.000 0.00 0.00 32.28 2.12
108 109 4.333649 CGGACTAATCGTGTACCTTGAGTA 59.666 45.833 0.00 0.00 0.00 2.59
109 110 3.128242 CGGACTAATCGTGTACCTTGAGT 59.872 47.826 0.00 0.00 0.00 3.41
110 111 3.692576 CGGACTAATCGTGTACCTTGAG 58.307 50.000 0.00 0.00 0.00 3.02
111 112 2.159338 GCGGACTAATCGTGTACCTTGA 60.159 50.000 0.00 0.00 0.00 3.02
112 113 2.190981 GCGGACTAATCGTGTACCTTG 58.809 52.381 0.00 0.00 0.00 3.61
113 114 1.820519 TGCGGACTAATCGTGTACCTT 59.179 47.619 0.00 0.00 0.00 3.50
114 115 1.466856 TGCGGACTAATCGTGTACCT 58.533 50.000 0.00 0.00 0.00 3.08
115 116 2.282701 TTGCGGACTAATCGTGTACC 57.717 50.000 0.00 0.00 0.00 3.34
116 117 3.483085 GCTTTTGCGGACTAATCGTGTAC 60.483 47.826 0.00 0.00 34.86 2.90
117 118 2.669434 GCTTTTGCGGACTAATCGTGTA 59.331 45.455 0.00 0.00 34.86 2.90
118 119 1.463444 GCTTTTGCGGACTAATCGTGT 59.537 47.619 0.00 0.00 34.86 4.49
119 120 2.159467 GCTTTTGCGGACTAATCGTG 57.841 50.000 0.00 0.00 34.86 4.35
124 125 9.392705 ATTGATGACAATGCTTTTGCGGACTAA 62.393 37.037 0.00 0.00 43.90 2.24
125 126 8.013948 ATTGATGACAATGCTTTTGCGGACTA 62.014 38.462 0.00 0.00 43.90 2.59
126 127 7.293939 ATTGATGACAATGCTTTTGCGGACT 62.294 40.000 0.00 0.00 43.90 3.85
127 128 5.147208 ATTGATGACAATGCTTTTGCGGAC 61.147 41.667 0.00 0.00 43.90 4.79
128 129 3.056678 ATTGATGACAATGCTTTTGCGGA 60.057 39.130 0.00 0.00 43.90 5.54
129 130 3.255725 ATTGATGACAATGCTTTTGCGG 58.744 40.909 0.00 0.00 43.90 5.69
130 131 3.921630 TGATTGATGACAATGCTTTTGCG 59.078 39.130 0.00 0.00 45.30 4.85
131 132 4.092383 GGTGATTGATGACAATGCTTTTGC 59.908 41.667 0.00 0.00 45.30 3.68
132 133 5.231702 TGGTGATTGATGACAATGCTTTTG 58.768 37.500 0.00 0.00 45.30 2.44
133 134 5.471556 TGGTGATTGATGACAATGCTTTT 57.528 34.783 0.00 0.00 45.30 2.27
134 135 5.471556 TTGGTGATTGATGACAATGCTTT 57.528 34.783 0.00 0.00 45.30 3.51
135 136 5.471556 TTTGGTGATTGATGACAATGCTT 57.528 34.783 0.00 0.00 45.30 3.91
136 137 5.221481 TGTTTTGGTGATTGATGACAATGCT 60.221 36.000 0.00 0.00 45.30 3.79
137 138 4.989797 TGTTTTGGTGATTGATGACAATGC 59.010 37.500 0.00 0.00 45.30 3.56
138 139 5.406175 GGTGTTTTGGTGATTGATGACAATG 59.594 40.000 0.00 0.00 45.30 2.82
140 141 4.648762 AGGTGTTTTGGTGATTGATGACAA 59.351 37.500 0.00 0.00 40.42 3.18
141 142 4.214310 AGGTGTTTTGGTGATTGATGACA 58.786 39.130 0.00 0.00 0.00 3.58
142 143 4.853924 AGGTGTTTTGGTGATTGATGAC 57.146 40.909 0.00 0.00 0.00 3.06
143 144 5.476599 CCTAAGGTGTTTTGGTGATTGATGA 59.523 40.000 0.00 0.00 0.00 2.92
144 145 5.476599 TCCTAAGGTGTTTTGGTGATTGATG 59.523 40.000 0.00 0.00 33.90 3.07
145 146 5.640147 TCCTAAGGTGTTTTGGTGATTGAT 58.360 37.500 0.00 0.00 33.90 2.57
146 147 5.055265 TCCTAAGGTGTTTTGGTGATTGA 57.945 39.130 0.00 0.00 33.90 2.57
147 148 5.782893 TTCCTAAGGTGTTTTGGTGATTG 57.217 39.130 0.00 0.00 33.90 2.67
148 149 8.485578 TTTATTCCTAAGGTGTTTTGGTGATT 57.514 30.769 0.00 0.00 33.90 2.57
149 150 8.664669 ATTTATTCCTAAGGTGTTTTGGTGAT 57.335 30.769 0.00 0.00 33.90 3.06
150 151 9.762381 ATATTTATTCCTAAGGTGTTTTGGTGA 57.238 29.630 0.00 0.00 33.90 4.02
151 152 9.801873 CATATTTATTCCTAAGGTGTTTTGGTG 57.198 33.333 0.00 0.00 33.90 4.17
152 153 8.474831 GCATATTTATTCCTAAGGTGTTTTGGT 58.525 33.333 0.00 0.00 33.90 3.67
153 154 7.926018 GGCATATTTATTCCTAAGGTGTTTTGG 59.074 37.037 0.00 0.00 33.54 3.28
154 155 7.926018 GGGCATATTTATTCCTAAGGTGTTTTG 59.074 37.037 0.00 0.00 0.00 2.44
155 156 7.844269 AGGGCATATTTATTCCTAAGGTGTTTT 59.156 33.333 0.00 0.00 0.00 2.43
156 157 7.362234 AGGGCATATTTATTCCTAAGGTGTTT 58.638 34.615 0.00 0.00 0.00 2.83
157 158 6.922540 AGGGCATATTTATTCCTAAGGTGTT 58.077 36.000 0.00 0.00 0.00 3.32
158 159 6.530601 AGGGCATATTTATTCCTAAGGTGT 57.469 37.500 0.00 0.00 0.00 4.16
159 160 7.942341 TGTAAGGGCATATTTATTCCTAAGGTG 59.058 37.037 0.00 0.00 0.00 4.00
160 161 7.942894 GTGTAAGGGCATATTTATTCCTAAGGT 59.057 37.037 0.00 0.00 0.00 3.50
161 162 7.942341 TGTGTAAGGGCATATTTATTCCTAAGG 59.058 37.037 0.00 0.00 0.00 2.69
162 163 8.784043 GTGTGTAAGGGCATATTTATTCCTAAG 58.216 37.037 0.00 0.00 0.00 2.18
163 164 7.442969 CGTGTGTAAGGGCATATTTATTCCTAA 59.557 37.037 0.00 0.00 0.00 2.69
164 165 6.932400 CGTGTGTAAGGGCATATTTATTCCTA 59.068 38.462 0.00 0.00 0.00 2.94
165 166 5.763204 CGTGTGTAAGGGCATATTTATTCCT 59.237 40.000 0.00 0.00 0.00 3.36
166 167 5.048991 CCGTGTGTAAGGGCATATTTATTCC 60.049 44.000 0.00 0.00 0.00 3.01
167 168 5.529800 ACCGTGTGTAAGGGCATATTTATTC 59.470 40.000 0.00 0.00 37.32 1.75
168 169 5.442391 ACCGTGTGTAAGGGCATATTTATT 58.558 37.500 0.00 0.00 37.32 1.40
169 170 5.043737 ACCGTGTGTAAGGGCATATTTAT 57.956 39.130 0.00 0.00 37.32 1.40
170 171 4.490899 ACCGTGTGTAAGGGCATATTTA 57.509 40.909 0.00 0.00 37.32 1.40
171 172 3.359695 ACCGTGTGTAAGGGCATATTT 57.640 42.857 0.00 0.00 37.32 1.40
172 173 3.359695 AACCGTGTGTAAGGGCATATT 57.640 42.857 0.00 0.00 37.32 1.28
173 174 3.359695 AAACCGTGTGTAAGGGCATAT 57.640 42.857 0.00 0.00 37.32 1.78
174 175 2.863132 AAACCGTGTGTAAGGGCATA 57.137 45.000 0.00 0.00 37.32 3.14
175 176 2.863132 TAAACCGTGTGTAAGGGCAT 57.137 45.000 0.00 0.00 37.32 4.40
176 177 2.634815 TTAAACCGTGTGTAAGGGCA 57.365 45.000 0.00 0.00 37.32 5.36
177 178 2.162809 CCATTAAACCGTGTGTAAGGGC 59.837 50.000 5.20 0.00 31.79 5.19
178 179 3.414269 ACCATTAAACCGTGTGTAAGGG 58.586 45.455 13.03 13.03 41.36 3.95
179 180 7.333921 TGTTATACCATTAAACCGTGTGTAAGG 59.666 37.037 0.00 0.00 0.00 2.69
180 181 8.254178 TGTTATACCATTAAACCGTGTGTAAG 57.746 34.615 0.00 0.00 0.00 2.34
181 182 8.789825 ATGTTATACCATTAAACCGTGTGTAA 57.210 30.769 0.00 0.00 0.00 2.41
182 183 8.666573 CAATGTTATACCATTAAACCGTGTGTA 58.333 33.333 0.00 0.00 33.37 2.90
183 184 7.390996 TCAATGTTATACCATTAAACCGTGTGT 59.609 33.333 0.00 0.00 33.37 3.72
184 185 7.694784 GTCAATGTTATACCATTAAACCGTGTG 59.305 37.037 0.00 0.00 33.37 3.82
185 186 7.390996 TGTCAATGTTATACCATTAAACCGTGT 59.609 33.333 0.00 0.00 33.37 4.49
199 200 5.744171 AGAGCCATGTGTGTCAATGTTATA 58.256 37.500 0.00 0.00 0.00 0.98
207 208 4.994744 CGAGAGCCATGTGTGTCA 57.005 55.556 0.00 0.00 0.00 3.58
258 259 1.970917 GAAAGGACTGCACGATGGCG 61.971 60.000 0.00 0.00 44.79 5.69
262 263 0.389948 GGTCGAAAGGACTGCACGAT 60.390 55.000 0.00 0.00 45.35 3.73
266 267 1.488705 ATGGGGTCGAAAGGACTGCA 61.489 55.000 0.00 0.00 45.35 4.41
310 311 0.033208 TGCTAGGGGATTGCCTTTGG 60.033 55.000 0.00 0.00 0.00 3.28
313 314 0.468771 GCATGCTAGGGGATTGCCTT 60.469 55.000 11.37 0.00 0.00 4.35
333 334 2.177977 CTGACTATTGCTGACGTCGAC 58.822 52.381 11.62 5.18 0.00 4.20
368 369 2.355126 CGACGAGCTGTGCACTGT 60.355 61.111 22.70 11.36 0.00 3.55
377 378 1.405821 CACTTCTTATCCCGACGAGCT 59.594 52.381 0.00 0.00 0.00 4.09
435 454 1.128200 AGTATCCCGCTTGCCATGTA 58.872 50.000 0.00 0.00 0.00 2.29
446 465 2.428171 TCACCGGTTTTCTAGTATCCCG 59.572 50.000 2.97 6.67 35.32 5.14
483 503 3.053245 TGTCCAAAACCAGAAAGAAGGGA 60.053 43.478 0.00 0.00 0.00 4.20
486 506 5.687285 CGAATTGTCCAAAACCAGAAAGAAG 59.313 40.000 0.00 0.00 0.00 2.85
487 507 5.126384 ACGAATTGTCCAAAACCAGAAAGAA 59.874 36.000 0.00 0.00 0.00 2.52
488 508 4.642885 ACGAATTGTCCAAAACCAGAAAGA 59.357 37.500 0.00 0.00 0.00 2.52
505 525 4.562082 TGTTCTGATACCGAACACGAATT 58.438 39.130 1.82 0.00 44.03 2.17
568 588 6.850317 CGAATTTGCAAAAGGTTAACATTTGG 59.150 34.615 25.14 20.77 35.21 3.28
580 600 1.672737 GGCCCCTCGAATTTGCAAAAG 60.673 52.381 17.19 8.77 0.00 2.27
582 602 0.829602 TGGCCCCTCGAATTTGCAAA 60.830 50.000 15.44 15.44 0.00 3.68
586 606 1.544724 TTTCTGGCCCCTCGAATTTG 58.455 50.000 0.00 0.00 0.00 2.32
655 1193 3.391382 GAGCTGGCCGTACCACCT 61.391 66.667 0.00 0.00 46.36 4.00
656 1194 3.702048 TGAGCTGGCCGTACCACC 61.702 66.667 0.00 0.00 46.36 4.61
673 1211 2.331194 CGTCACGACCCTTTTATTCGT 58.669 47.619 0.00 0.00 46.57 3.85
681 1219 3.677648 CGACCCGTCACGACCCTT 61.678 66.667 0.00 0.00 0.00 3.95
684 1222 4.712425 CACCGACCCGTCACGACC 62.712 72.222 0.00 0.00 0.00 4.79
685 1223 4.712425 CCACCGACCCGTCACGAC 62.712 72.222 0.00 0.00 0.00 4.34
687 1225 4.712425 GACCACCGACCCGTCACG 62.712 72.222 0.00 0.00 0.00 4.35
688 1226 2.864471 AAGACCACCGACCCGTCAC 61.864 63.158 0.00 0.00 0.00 3.67
690 1228 2.048503 CAAGACCACCGACCCGTC 60.049 66.667 0.00 0.00 0.00 4.79
691 1229 3.622826 CCAAGACCACCGACCCGT 61.623 66.667 0.00 0.00 0.00 5.28
692 1230 4.388499 CCCAAGACCACCGACCCG 62.388 72.222 0.00 0.00 0.00 5.28
693 1231 4.029809 CCCCAAGACCACCGACCC 62.030 72.222 0.00 0.00 0.00 4.46
694 1232 4.717313 GCCCCAAGACCACCGACC 62.717 72.222 0.00 0.00 0.00 4.79
696 1234 2.852075 AAGCCCCAAGACCACCGA 60.852 61.111 0.00 0.00 0.00 4.69
698 1236 1.603739 GTCAAGCCCCAAGACCACC 60.604 63.158 0.00 0.00 0.00 4.61
700 1238 0.178992 CAAGTCAAGCCCCAAGACCA 60.179 55.000 0.00 0.00 32.82 4.02
732 1300 1.978473 CCAGAGTGTGTGCTAGGCT 59.022 57.895 0.00 0.00 0.00 4.58
734 1302 1.446792 CGCCAGAGTGTGTGCTAGG 60.447 63.158 0.00 0.00 0.00 3.02
735 1303 1.446792 CCGCCAGAGTGTGTGCTAG 60.447 63.158 0.00 0.00 0.00 3.42
736 1304 2.656646 CCGCCAGAGTGTGTGCTA 59.343 61.111 0.00 0.00 0.00 3.49
737 1305 4.320456 CCCGCCAGAGTGTGTGCT 62.320 66.667 0.00 0.00 0.00 4.40
738 1306 4.626081 ACCCGCCAGAGTGTGTGC 62.626 66.667 0.00 0.00 0.00 4.57
739 1307 2.357517 GACCCGCCAGAGTGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
740 1308 3.991051 CGACCCGCCAGAGTGTGT 61.991 66.667 0.00 0.00 0.00 3.72
741 1309 3.220999 TTCGACCCGCCAGAGTGTG 62.221 63.158 0.00 0.00 0.00 3.82
742 1310 2.915659 TTCGACCCGCCAGAGTGT 60.916 61.111 0.00 0.00 0.00 3.55
780 1348 3.116463 CGAATAAAAGGGCCGGGC 58.884 61.111 22.00 22.00 0.00 6.13
781 1349 2.486663 GGCGAATAAAAGGGCCGGG 61.487 63.158 2.18 0.00 35.59 5.73
782 1350 2.486663 GGGCGAATAAAAGGGCCGG 61.487 63.158 0.00 0.00 46.50 6.13
783 1351 3.116463 GGGCGAATAAAAGGGCCG 58.884 61.111 0.00 0.00 46.50 6.13
784 1352 1.751544 ACGGGCGAATAAAAGGGCC 60.752 57.895 0.00 0.00 44.82 5.80
785 1353 1.431845 CACGGGCGAATAAAAGGGC 59.568 57.895 0.00 0.00 0.00 5.19
786 1354 1.431845 GCACGGGCGAATAAAAGGG 59.568 57.895 0.00 0.00 0.00 3.95
797 1365 2.049156 GAAAAAGGCAGCACGGGC 60.049 61.111 0.00 0.00 41.61 6.13
802 1370 0.680618 CCATGGTGAAAAAGGCAGCA 59.319 50.000 2.57 0.00 46.25 4.41
803 1371 0.037046 CCCATGGTGAAAAAGGCAGC 60.037 55.000 11.73 0.00 0.00 5.25
804 1372 0.037046 GCCCATGGTGAAAAAGGCAG 60.037 55.000 11.73 0.00 40.20 4.85
805 1373 1.479368 GGCCCATGGTGAAAAAGGCA 61.479 55.000 11.73 0.00 42.29 4.75
811 1394 0.482446 ACTCAAGGCCCATGGTGAAA 59.518 50.000 11.73 0.00 0.00 2.69
830 1413 0.318441 CAAAGCGTCTGGACTCTGGA 59.682 55.000 0.00 0.00 0.00 3.86
864 1478 4.394712 CGTGGAGAGGGGGCACAC 62.395 72.222 0.00 0.00 0.00 3.82
866 1480 3.319198 TTCGTGGAGAGGGGGCAC 61.319 66.667 0.00 0.00 0.00 5.01
867 1481 3.319198 GTTCGTGGAGAGGGGGCA 61.319 66.667 0.00 0.00 0.00 5.36
885 1499 2.052157 GTATATTCGGCAGCAGTCGTC 58.948 52.381 2.22 0.00 44.74 4.20
887 1501 2.320367 GAGTATATTCGGCAGCAGTCG 58.680 52.381 0.00 0.00 46.11 4.18
888 1502 2.678324 GGAGTATATTCGGCAGCAGTC 58.322 52.381 0.00 0.00 0.00 3.51
889 1503 1.000163 CGGAGTATATTCGGCAGCAGT 60.000 52.381 0.00 0.00 0.00 4.40
890 1504 1.000163 ACGGAGTATATTCGGCAGCAG 60.000 52.381 0.00 0.00 41.94 4.24
891 1505 1.037493 ACGGAGTATATTCGGCAGCA 58.963 50.000 0.00 0.00 41.94 4.41
892 1506 3.888093 ACGGAGTATATTCGGCAGC 57.112 52.632 3.15 0.00 41.94 5.25
936 1564 1.814248 GCACGAAAGAAAGACAGGGGT 60.814 52.381 0.00 0.00 0.00 4.95
938 1566 1.593196 TGCACGAAAGAAAGACAGGG 58.407 50.000 0.00 0.00 0.00 4.45
942 1570 2.095718 GTGGGATGCACGAAAGAAAGAC 60.096 50.000 0.00 0.00 0.00 3.01
943 1571 2.151202 GTGGGATGCACGAAAGAAAGA 58.849 47.619 0.00 0.00 0.00 2.52
1594 2235 4.888038 TCAATCAATCAATCAGAAGGCG 57.112 40.909 0.00 0.00 0.00 5.52
1595 2236 6.802608 TCAATCAATCAATCAATCAGAAGGC 58.197 36.000 0.00 0.00 0.00 4.35
1604 2245 9.458374 CGATCAATCAATCAATCAATCAATCAA 57.542 29.630 0.00 0.00 0.00 2.57
1605 2246 8.842280 TCGATCAATCAATCAATCAATCAATCA 58.158 29.630 0.00 0.00 0.00 2.57
1606 2247 9.841880 ATCGATCAATCAATCAATCAATCAATC 57.158 29.630 0.00 0.00 0.00 2.67
1607 2248 9.626045 CATCGATCAATCAATCAATCAATCAAT 57.374 29.630 0.00 0.00 0.00 2.57
1608 2249 7.593644 GCATCGATCAATCAATCAATCAATCAA 59.406 33.333 0.00 0.00 0.00 2.57
1609 2250 7.081976 GCATCGATCAATCAATCAATCAATCA 58.918 34.615 0.00 0.00 0.00 2.57
1610 2251 6.527023 GGCATCGATCAATCAATCAATCAATC 59.473 38.462 0.00 0.00 0.00 2.67
1611 2252 6.387465 GGCATCGATCAATCAATCAATCAAT 58.613 36.000 0.00 0.00 0.00 2.57
1612 2253 5.278610 GGGCATCGATCAATCAATCAATCAA 60.279 40.000 0.00 0.00 0.00 2.57
1613 2254 4.216902 GGGCATCGATCAATCAATCAATCA 59.783 41.667 0.00 0.00 0.00 2.57
1614 2255 4.458295 AGGGCATCGATCAATCAATCAATC 59.542 41.667 0.00 0.00 0.00 2.67
1615 2256 4.404640 AGGGCATCGATCAATCAATCAAT 58.595 39.130 0.00 0.00 0.00 2.57
1616 2257 3.817084 GAGGGCATCGATCAATCAATCAA 59.183 43.478 0.00 0.00 0.00 2.57
1643 2350 1.005394 AGATTAATACCGGGCGGCG 60.005 57.895 6.32 0.51 39.32 6.46
1648 2355 4.283467 TGATGACAGGAGATTAATACCGGG 59.717 45.833 6.32 0.00 0.00 5.73
1658 2365 5.922053 TCGATTCAATTGATGACAGGAGAT 58.078 37.500 9.40 0.00 37.92 2.75
1660 2367 6.259387 TGATTCGATTCAATTGATGACAGGAG 59.741 38.462 9.40 0.00 37.92 3.69
1661 2368 6.114767 TGATTCGATTCAATTGATGACAGGA 58.885 36.000 9.40 0.00 37.92 3.86
1662 2369 6.367686 TGATTCGATTCAATTGATGACAGG 57.632 37.500 9.40 0.00 37.92 4.00
1674 2411 3.130869 CCTTGGCCAATTGATTCGATTCA 59.869 43.478 20.85 5.92 0.00 2.57
1675 2412 3.381272 TCCTTGGCCAATTGATTCGATTC 59.619 43.478 20.85 0.29 0.00 2.52
1715 2452 7.780271 AGATGACCCTTCTCAAATAATTAACCC 59.220 37.037 0.00 0.00 0.00 4.11
1805 2739 1.991121 ATTTGCTGATCCGATGCCAT 58.009 45.000 0.00 0.00 0.00 4.40
1806 2740 1.766494 AATTTGCTGATCCGATGCCA 58.234 45.000 0.00 0.00 0.00 4.92
1807 2741 2.877043 AAATTTGCTGATCCGATGCC 57.123 45.000 0.00 0.00 0.00 4.40
1808 2742 4.032104 GTCAAAAATTTGCTGATCCGATGC 59.968 41.667 6.53 0.00 38.05 3.91
1923 2865 3.300388 TCCTCGACTCTCCAGCATTATT 58.700 45.455 0.00 0.00 0.00 1.40
1926 3122 1.561643 TTCCTCGACTCTCCAGCATT 58.438 50.000 0.00 0.00 0.00 3.56
2033 3229 9.571810 GTGCAAAATGAGTGAATATAATGAACA 57.428 29.630 0.00 0.00 0.00 3.18
2034 3230 9.023967 GGTGCAAAATGAGTGAATATAATGAAC 57.976 33.333 0.00 0.00 0.00 3.18
2035 3231 7.914871 CGGTGCAAAATGAGTGAATATAATGAA 59.085 33.333 0.00 0.00 0.00 2.57
2036 3232 7.066887 ACGGTGCAAAATGAGTGAATATAATGA 59.933 33.333 0.00 0.00 0.00 2.57
2037 3233 7.195646 ACGGTGCAAAATGAGTGAATATAATG 58.804 34.615 0.00 0.00 0.00 1.90
2038 3234 7.333528 ACGGTGCAAAATGAGTGAATATAAT 57.666 32.000 0.00 0.00 0.00 1.28
2039 3235 6.751514 ACGGTGCAAAATGAGTGAATATAA 57.248 33.333 0.00 0.00 0.00 0.98
2040 3236 7.497579 ACATACGGTGCAAAATGAGTGAATATA 59.502 33.333 0.00 0.00 0.00 0.86
2041 3237 6.318648 ACATACGGTGCAAAATGAGTGAATAT 59.681 34.615 0.00 0.00 0.00 1.28
2042 3238 5.645929 ACATACGGTGCAAAATGAGTGAATA 59.354 36.000 0.00 0.00 0.00 1.75
2043 3239 4.458989 ACATACGGTGCAAAATGAGTGAAT 59.541 37.500 0.00 0.00 0.00 2.57
2044 3240 3.818210 ACATACGGTGCAAAATGAGTGAA 59.182 39.130 0.00 0.00 0.00 3.18
2045 3241 3.407698 ACATACGGTGCAAAATGAGTGA 58.592 40.909 0.00 0.00 0.00 3.41
2046 3242 3.829886 ACATACGGTGCAAAATGAGTG 57.170 42.857 0.00 0.00 0.00 3.51
2047 3243 4.575885 ACTACATACGGTGCAAAATGAGT 58.424 39.130 0.00 0.00 0.00 3.41
2048 3244 4.034048 GGACTACATACGGTGCAAAATGAG 59.966 45.833 0.00 0.00 0.00 2.90
2155 3386 4.601406 ACCCAATTAACCTGCCATTCTA 57.399 40.909 0.00 0.00 0.00 2.10
2287 3518 2.440539 AGGACACAAGTAGAACGCAG 57.559 50.000 0.00 0.00 0.00 5.18
2333 3570 3.800506 GCAGTATAGCGTTCCGTAACAAT 59.199 43.478 0.00 0.00 35.16 2.71
2334 3571 3.119388 AGCAGTATAGCGTTCCGTAACAA 60.119 43.478 0.00 0.00 40.15 2.83
2335 3572 2.424601 AGCAGTATAGCGTTCCGTAACA 59.575 45.455 0.00 0.00 40.15 2.41
2432 3669 4.708421 AGCATTCCATTGTGAGTAGCAATT 59.292 37.500 0.00 0.00 34.68 2.32
2433 3670 4.275810 AGCATTCCATTGTGAGTAGCAAT 58.724 39.130 0.00 0.00 37.06 3.56
2435 3672 3.054875 AGAGCATTCCATTGTGAGTAGCA 60.055 43.478 0.00 0.00 0.00 3.49
2436 3673 3.539604 AGAGCATTCCATTGTGAGTAGC 58.460 45.455 0.00 0.00 0.00 3.58
2437 3674 6.426328 GGATAAGAGCATTCCATTGTGAGTAG 59.574 42.308 0.00 0.00 0.00 2.57
2438 3675 6.291377 GGATAAGAGCATTCCATTGTGAGTA 58.709 40.000 0.00 0.00 0.00 2.59
2556 4490 0.251832 TGTCCTGGACTCTCCACTCC 60.252 60.000 26.03 0.00 42.67 3.85
2558 4492 1.905215 CAATGTCCTGGACTCTCCACT 59.095 52.381 26.03 0.00 42.67 4.00
2559 4493 1.625818 ACAATGTCCTGGACTCTCCAC 59.374 52.381 26.03 0.35 42.67 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.