Multiple sequence alignment - TraesCS4B01G398900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G398900 chr4B 100.000 4043 0 0 1 4043 673116488 673112446 0.000000e+00 7467.0
1 TraesCS4B01G398900 chr4B 79.034 725 122 12 15 715 369180220 369180938 1.700000e-128 470.0
2 TraesCS4B01G398900 chr4B 100.000 30 0 0 3867 3896 646191927 646191898 5.650000e-04 56.5
3 TraesCS4B01G398900 chr5A 90.979 1818 63 42 1281 3050 706930502 706932266 0.000000e+00 2355.0
4 TraesCS4B01G398900 chr5A 93.627 204 13 0 3103 3306 706932351 706932554 5.080000e-79 305.0
5 TraesCS4B01G398900 chr5A 91.667 192 15 1 2661 2852 706599205 706599015 8.620000e-67 265.0
6 TraesCS4B01G398900 chr5A 98.305 118 2 0 993 1110 706930175 706930292 1.470000e-49 207.0
7 TraesCS4B01G398900 chr5A 83.673 147 9 4 3750 3896 706932982 706933113 1.530000e-24 124.0
8 TraesCS4B01G398900 chr5A 88.462 78 9 0 2767 2844 706599129 706599052 1.200000e-15 95.3
9 TraesCS4B01G398900 chr5A 93.617 47 3 0 3997 4043 706933200 706933246 2.020000e-08 71.3
10 TraesCS4B01G398900 chr5A 88.679 53 4 2 924 975 706930091 706930142 3.370000e-06 63.9
11 TraesCS4B01G398900 chr5A 83.333 66 1 2 890 947 706930039 706930102 7.000000e-03 52.8
12 TraesCS4B01G398900 chrUn 95.854 1182 17 8 1870 3050 99092045 99093195 0.000000e+00 1882.0
13 TraesCS4B01G398900 chrUn 92.897 535 18 14 1295 1816 99091404 99091931 0.000000e+00 760.0
14 TraesCS4B01G398900 chrUn 88.199 322 24 10 841 1154 99090816 99091131 4.940000e-99 372.0
15 TraesCS4B01G398900 chrUn 88.832 197 4 4 3106 3302 99093223 99093401 4.070000e-55 226.0
16 TraesCS4B01G398900 chrUn 97.500 80 2 0 3701 3780 99093781 99093860 1.960000e-28 137.0
17 TraesCS4B01G398900 chrUn 90.909 99 4 1 3945 4043 99094029 99094122 1.180000e-25 128.0
18 TraesCS4B01G398900 chrUn 89.041 73 7 1 1815 1886 99091957 99092029 5.570000e-14 89.8
19 TraesCS4B01G398900 chr7B 89.266 736 58 6 1 716 217694967 217695701 0.000000e+00 902.0
20 TraesCS4B01G398900 chr7B 94.737 57 3 0 3051 3107 162095014 162094958 5.570000e-14 89.8
21 TraesCS4B01G398900 chr7B 91.803 61 3 2 3051 3111 457538031 457538089 2.590000e-12 84.2
22 TraesCS4B01G398900 chr5D 83.924 734 94 9 5 716 192650193 192650924 0.000000e+00 680.0
23 TraesCS4B01G398900 chr5D 83.081 727 101 9 9 715 363983564 363982840 3.410000e-180 641.0
24 TraesCS4B01G398900 chr5D 83.333 366 60 1 260 625 364045751 364045387 1.800000e-88 337.0
25 TraesCS4B01G398900 chr2B 89.271 494 50 3 182 674 647601303 647601794 2.060000e-172 616.0
26 TraesCS4B01G398900 chr2B 79.945 723 120 14 14 715 697467288 697466570 3.610000e-140 508.0
27 TraesCS4B01G398900 chr2B 79.694 719 119 15 19 716 707786345 707785633 1.010000e-135 494.0
28 TraesCS4B01G398900 chr2B 96.491 57 2 0 3051 3107 797332331 797332387 1.200000e-15 95.3
29 TraesCS4B01G398900 chr2B 95.082 61 0 3 3051 3111 644565940 644565883 4.300000e-15 93.5
30 TraesCS4B01G398900 chr5B 84.075 584 81 2 5 576 197509681 197509098 1.640000e-153 553.0
31 TraesCS4B01G398900 chr5B 93.939 66 1 3 3051 3115 255181232 255181295 3.330000e-16 97.1
32 TraesCS4B01G398900 chr5B 86.667 60 7 1 394 453 268537518 268537576 9.380000e-07 65.8
33 TraesCS4B01G398900 chr7A 95.161 62 2 1 3051 3112 596735598 596735538 3.330000e-16 97.1
34 TraesCS4B01G398900 chr2D 96.491 57 2 0 3051 3107 638373444 638373500 1.200000e-15 95.3
35 TraesCS4B01G398900 chr2D 100.000 29 0 0 936 964 33543789 33543817 2.000000e-03 54.7
36 TraesCS4B01G398900 chr1B 98.039 51 1 0 3051 3101 602239572 602239522 5.570000e-14 89.8
37 TraesCS4B01G398900 chr1B 100.000 29 0 0 154 182 377682067 377682095 2.000000e-03 54.7
38 TraesCS4B01G398900 chr6B 94.737 57 2 1 3051 3107 503547041 503547096 2.000000e-13 87.9
39 TraesCS4B01G398900 chr6B 96.875 32 1 0 154 185 392145682 392145713 2.000000e-03 54.7
40 TraesCS4B01G398900 chr3D 97.368 38 0 1 928 964 75140266 75140303 3.370000e-06 63.9
41 TraesCS4B01G398900 chr3D 100.000 30 0 0 3868 3897 546663655 546663684 5.650000e-04 56.5
42 TraesCS4B01G398900 chr3D 100.000 29 0 0 3870 3898 587198928 587198956 2.000000e-03 54.7
43 TraesCS4B01G398900 chr3A 100.000 32 0 0 3866 3897 416097801 416097832 4.360000e-05 60.2
44 TraesCS4B01G398900 chr3A 97.143 35 0 1 3868 3901 713620788 713620822 1.570000e-04 58.4
45 TraesCS4B01G398900 chr6D 100.000 31 0 0 3868 3898 84641932 84641902 1.570000e-04 58.4
46 TraesCS4B01G398900 chr3B 100.000 30 0 0 3868 3897 713285707 713285736 5.650000e-04 56.5
47 TraesCS4B01G398900 chr4A 100.000 29 0 0 3868 3896 485229111 485229139 2.000000e-03 54.7
48 TraesCS4B01G398900 chr1A 96.875 32 1 0 3870 3901 581207581 581207612 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G398900 chr4B 673112446 673116488 4042 True 7467.000000 7467 100.000000 1 4043 1 chr4B.!!$R2 4042
1 TraesCS4B01G398900 chr4B 369180220 369180938 718 False 470.000000 470 79.034000 15 715 1 chr4B.!!$F1 700
2 TraesCS4B01G398900 chr5A 706930039 706933246 3207 False 454.142857 2355 90.316143 890 4043 7 chr5A.!!$F1 3153
3 TraesCS4B01G398900 chrUn 99090816 99094122 3306 False 513.542857 1882 91.890286 841 4043 7 chrUn.!!$F1 3202
4 TraesCS4B01G398900 chr7B 217694967 217695701 734 False 902.000000 902 89.266000 1 716 1 chr7B.!!$F1 715
5 TraesCS4B01G398900 chr5D 192650193 192650924 731 False 680.000000 680 83.924000 5 716 1 chr5D.!!$F1 711
6 TraesCS4B01G398900 chr5D 363982840 363983564 724 True 641.000000 641 83.081000 9 715 1 chr5D.!!$R1 706
7 TraesCS4B01G398900 chr2B 697466570 697467288 718 True 508.000000 508 79.945000 14 715 1 chr2B.!!$R2 701
8 TraesCS4B01G398900 chr2B 707785633 707786345 712 True 494.000000 494 79.694000 19 716 1 chr2B.!!$R3 697
9 TraesCS4B01G398900 chr5B 197509098 197509681 583 True 553.000000 553 84.075000 5 576 1 chr5B.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 789 0.179089 CTCTGAACTCGGGCTGATGG 60.179 60.0 0.0 0.0 0.00 3.51 F
1176 1313 0.318441 CTCTGCTCGTGTCCCTCAAA 59.682 55.0 0.0 0.0 0.00 2.69 F
2558 2975 0.829990 GCTTCTAGGCTGCTCTTCCT 59.170 55.0 0.0 0.0 36.51 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 2288 0.185175 GATGTTATGGACCCCACCCC 59.815 60.0 0.00 0.0 35.80 4.95 R
2911 3328 0.311165 CGGCGATCGTAATCTGGACT 59.689 55.0 17.81 0.0 0.00 3.85 R
3831 4434 0.256752 ATGTAAGCAGCATGGCCTGA 59.743 50.0 3.32 0.0 35.86 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 2.493278 CAAGTTGATCACAATGGGGGAC 59.507 50.000 0.00 0.00 38.32 4.46
105 107 0.604578 CACAATGGGGGACAAAGCAG 59.395 55.000 0.00 0.00 0.00 4.24
201 215 2.855209 CAGGGAATCTCCTGCATAGG 57.145 55.000 5.13 0.00 46.47 2.57
235 249 7.619965 TCACTTACCATCATACAAATGTGAGA 58.380 34.615 0.00 0.00 34.50 3.27
237 251 8.340443 CACTTACCATCATACAAATGTGAGATG 58.660 37.037 16.59 16.59 38.85 2.90
320 334 2.887152 GTTGTTGGGAAGCTCTGATTGT 59.113 45.455 0.00 0.00 0.00 2.71
333 347 5.879223 AGCTCTGATTGTTCATAGAAACAGG 59.121 40.000 0.00 0.00 40.08 4.00
352 366 2.861147 GGGCTTATCACCCTATGTCC 57.139 55.000 0.00 0.00 44.68 4.02
360 374 6.206829 GCTTATCACCCTATGTCCAAATTACC 59.793 42.308 0.00 0.00 0.00 2.85
409 423 1.971481 TGCCATGGAAATCCTCATCG 58.029 50.000 18.40 0.00 36.82 3.84
479 494 1.001641 GGCAGCAGTCCATTCAGGT 60.002 57.895 0.00 0.00 39.02 4.00
487 502 3.490348 CAGTCCATTCAGGTTTGGAAGT 58.510 45.455 0.00 0.00 43.42 3.01
490 505 2.158475 TCCATTCAGGTTTGGAAGTGCT 60.158 45.455 0.00 0.00 39.05 4.40
510 525 3.181499 GCTTGCTGAAACATGATCTCCTG 60.181 47.826 0.00 0.00 0.00 3.86
555 570 3.132824 CCAAGTTTGAAGCCCAACTTTCT 59.867 43.478 0.00 0.00 39.29 2.52
569 584 4.272018 CCAACTTTCTAGCTGGATTGATCG 59.728 45.833 12.09 0.00 39.55 3.69
632 649 4.278419 AGAACATGAGTTGGTTAACTTGGC 59.722 41.667 5.42 0.00 46.79 4.52
731 759 3.355626 AAAAAGAAAAGACGCCTGAGC 57.644 42.857 0.00 0.00 0.00 4.26
732 760 2.262423 AAAGAAAAGACGCCTGAGCT 57.738 45.000 0.00 0.00 36.60 4.09
733 761 3.402628 AAAGAAAAGACGCCTGAGCTA 57.597 42.857 0.00 0.00 36.60 3.32
734 762 3.402628 AAGAAAAGACGCCTGAGCTAA 57.597 42.857 0.00 0.00 36.60 3.09
735 763 3.402628 AGAAAAGACGCCTGAGCTAAA 57.597 42.857 0.00 0.00 36.60 1.85
736 764 3.740115 AGAAAAGACGCCTGAGCTAAAA 58.260 40.909 0.00 0.00 36.60 1.52
737 765 4.327680 AGAAAAGACGCCTGAGCTAAAAT 58.672 39.130 0.00 0.00 36.60 1.82
738 766 4.762251 AGAAAAGACGCCTGAGCTAAAATT 59.238 37.500 0.00 0.00 36.60 1.82
739 767 4.425577 AAAGACGCCTGAGCTAAAATTG 57.574 40.909 0.00 0.00 36.60 2.32
740 768 2.359900 AGACGCCTGAGCTAAAATTGG 58.640 47.619 0.00 0.00 36.60 3.16
741 769 2.084546 GACGCCTGAGCTAAAATTGGT 58.915 47.619 0.00 0.00 36.60 3.67
742 770 2.084546 ACGCCTGAGCTAAAATTGGTC 58.915 47.619 0.00 0.00 36.60 4.02
743 771 2.290323 ACGCCTGAGCTAAAATTGGTCT 60.290 45.455 0.00 0.00 36.60 3.85
744 772 2.352960 CGCCTGAGCTAAAATTGGTCTC 59.647 50.000 0.00 0.00 36.60 3.36
745 773 3.615155 GCCTGAGCTAAAATTGGTCTCT 58.385 45.455 0.00 0.00 35.50 3.10
746 774 3.376546 GCCTGAGCTAAAATTGGTCTCTG 59.623 47.826 0.00 0.00 35.50 3.35
747 775 4.836825 CCTGAGCTAAAATTGGTCTCTGA 58.163 43.478 0.00 0.00 33.59 3.27
748 776 5.248640 CCTGAGCTAAAATTGGTCTCTGAA 58.751 41.667 0.00 0.00 33.59 3.02
749 777 5.123027 CCTGAGCTAAAATTGGTCTCTGAAC 59.877 44.000 0.00 0.00 33.59 3.18
750 778 5.869579 TGAGCTAAAATTGGTCTCTGAACT 58.130 37.500 0.00 0.00 33.59 3.01
751 779 5.934625 TGAGCTAAAATTGGTCTCTGAACTC 59.065 40.000 0.00 0.00 33.59 3.01
752 780 4.932200 AGCTAAAATTGGTCTCTGAACTCG 59.068 41.667 0.00 0.00 0.00 4.18
753 781 4.093556 GCTAAAATTGGTCTCTGAACTCGG 59.906 45.833 0.00 0.00 0.00 4.63
754 782 2.770164 AATTGGTCTCTGAACTCGGG 57.230 50.000 0.00 0.00 0.00 5.14
755 783 0.250513 ATTGGTCTCTGAACTCGGGC 59.749 55.000 0.00 0.00 0.00 6.13
756 784 0.832135 TTGGTCTCTGAACTCGGGCT 60.832 55.000 0.00 0.00 0.00 5.19
757 785 1.216710 GGTCTCTGAACTCGGGCTG 59.783 63.158 0.00 0.00 0.00 4.85
758 786 1.251527 GGTCTCTGAACTCGGGCTGA 61.252 60.000 0.00 0.00 0.00 4.26
759 787 0.820871 GTCTCTGAACTCGGGCTGAT 59.179 55.000 0.00 0.00 0.00 2.90
760 788 0.820226 TCTCTGAACTCGGGCTGATG 59.180 55.000 0.00 0.00 0.00 3.07
761 789 0.179089 CTCTGAACTCGGGCTGATGG 60.179 60.000 0.00 0.00 0.00 3.51
762 790 0.904865 TCTGAACTCGGGCTGATGGT 60.905 55.000 0.00 0.00 0.00 3.55
763 791 0.460987 CTGAACTCGGGCTGATGGTC 60.461 60.000 0.00 0.04 0.00 4.02
764 792 1.153349 GAACTCGGGCTGATGGTCC 60.153 63.158 0.00 0.00 36.08 4.46
765 793 1.899437 GAACTCGGGCTGATGGTCCA 61.899 60.000 0.00 0.00 40.36 4.02
766 794 1.274703 AACTCGGGCTGATGGTCCAT 61.275 55.000 3.26 3.26 40.36 3.41
767 795 1.227764 CTCGGGCTGATGGTCCATG 60.228 63.158 9.76 0.00 40.36 3.66
768 796 1.688884 TCGGGCTGATGGTCCATGA 60.689 57.895 9.76 0.00 40.36 3.07
769 797 1.056125 TCGGGCTGATGGTCCATGAT 61.056 55.000 9.76 0.00 40.36 2.45
770 798 0.887836 CGGGCTGATGGTCCATGATG 60.888 60.000 9.76 0.03 40.36 3.07
771 799 0.538977 GGGCTGATGGTCCATGATGG 60.539 60.000 9.76 4.74 40.02 3.51
772 800 0.475475 GGCTGATGGTCCATGATGGA 59.525 55.000 10.75 10.75 45.98 3.41
785 813 6.286240 TCCATGATGGAGTGTGTATATAGC 57.714 41.667 10.75 0.00 42.67 2.97
786 814 5.779771 TCCATGATGGAGTGTGTATATAGCA 59.220 40.000 10.75 0.00 42.67 3.49
787 815 6.071165 TCCATGATGGAGTGTGTATATAGCAG 60.071 42.308 10.75 0.00 42.67 4.24
788 816 5.139435 TGATGGAGTGTGTATATAGCAGC 57.861 43.478 0.00 0.00 0.00 5.25
789 817 4.835056 TGATGGAGTGTGTATATAGCAGCT 59.165 41.667 0.00 0.00 0.00 4.24
790 818 5.305386 TGATGGAGTGTGTATATAGCAGCTT 59.695 40.000 0.00 0.00 0.00 3.74
791 819 4.948847 TGGAGTGTGTATATAGCAGCTTG 58.051 43.478 0.00 0.00 0.00 4.01
792 820 3.743396 GGAGTGTGTATATAGCAGCTTGC 59.257 47.826 0.00 0.00 45.46 4.01
793 821 3.733337 AGTGTGTATATAGCAGCTTGCC 58.267 45.455 0.00 0.00 46.52 4.52
794 822 2.476619 GTGTGTATATAGCAGCTTGCCG 59.523 50.000 0.00 0.00 46.52 5.69
795 823 2.102420 TGTGTATATAGCAGCTTGCCGT 59.898 45.455 0.00 0.00 46.52 5.68
796 824 2.476619 GTGTATATAGCAGCTTGCCGTG 59.523 50.000 0.00 0.00 46.52 4.94
797 825 2.364002 TGTATATAGCAGCTTGCCGTGA 59.636 45.455 0.00 0.00 46.52 4.35
798 826 2.620251 ATATAGCAGCTTGCCGTGAA 57.380 45.000 0.00 0.00 46.52 3.18
799 827 2.394930 TATAGCAGCTTGCCGTGAAA 57.605 45.000 0.00 0.00 46.52 2.69
800 828 1.089920 ATAGCAGCTTGCCGTGAAAG 58.910 50.000 0.00 0.00 46.52 2.62
801 829 1.577328 TAGCAGCTTGCCGTGAAAGC 61.577 55.000 0.00 8.18 46.52 3.51
820 848 3.119096 GGAGCGGACCGAGCAAAC 61.119 66.667 20.50 0.00 37.01 2.93
821 849 2.048127 GAGCGGACCGAGCAAACT 60.048 61.111 20.50 3.16 37.01 2.66
822 850 2.357517 AGCGGACCGAGCAAACTG 60.358 61.111 20.50 0.00 37.01 3.16
823 851 2.357034 GCGGACCGAGCAAACTGA 60.357 61.111 20.50 0.00 34.19 3.41
824 852 1.959226 GCGGACCGAGCAAACTGAA 60.959 57.895 20.50 0.00 34.19 3.02
825 853 1.860078 CGGACCGAGCAAACTGAAC 59.140 57.895 8.64 0.00 0.00 3.18
826 854 1.566018 CGGACCGAGCAAACTGAACC 61.566 60.000 8.64 0.00 0.00 3.62
827 855 1.566018 GGACCGAGCAAACTGAACCG 61.566 60.000 0.00 0.00 0.00 4.44
828 856 0.599204 GACCGAGCAAACTGAACCGA 60.599 55.000 0.00 0.00 0.00 4.69
829 857 0.600255 ACCGAGCAAACTGAACCGAG 60.600 55.000 0.00 0.00 0.00 4.63
830 858 1.493311 CGAGCAAACTGAACCGAGC 59.507 57.895 0.00 0.00 0.00 5.03
831 859 1.869690 GAGCAAACTGAACCGAGCC 59.130 57.895 0.00 0.00 0.00 4.70
832 860 1.901650 GAGCAAACTGAACCGAGCCG 61.902 60.000 0.00 0.00 0.00 5.52
833 861 1.959226 GCAAACTGAACCGAGCCGA 60.959 57.895 0.00 0.00 0.00 5.54
834 862 1.901650 GCAAACTGAACCGAGCCGAG 61.902 60.000 0.00 0.00 0.00 4.63
835 863 1.668151 AAACTGAACCGAGCCGAGC 60.668 57.895 0.00 0.00 0.00 5.03
836 864 3.916392 AACTGAACCGAGCCGAGCG 62.916 63.158 0.00 0.00 0.00 5.03
868 896 0.798776 CATGAAGAGCCCACAACGTC 59.201 55.000 0.00 0.00 0.00 4.34
869 897 0.321653 ATGAAGAGCCCACAACGTCC 60.322 55.000 0.00 0.00 0.00 4.79
870 898 1.070786 GAAGAGCCCACAACGTCCA 59.929 57.895 0.00 0.00 0.00 4.02
871 899 1.227853 AAGAGCCCACAACGTCCAC 60.228 57.895 0.00 0.00 0.00 4.02
888 916 1.609208 CACTTTGTGGGTAGCTTGCT 58.391 50.000 0.00 0.00 0.00 3.91
891 919 3.031013 ACTTTGTGGGTAGCTTGCTTTT 58.969 40.909 0.00 0.00 0.00 2.27
892 920 3.181476 ACTTTGTGGGTAGCTTGCTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
941 989 4.507916 TCCCCTCCTCTCTCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
978 1026 4.994471 CGCACAGCACAGCAGGGA 62.994 66.667 0.00 0.00 0.00 4.20
979 1027 3.360340 GCACAGCACAGCAGGGAC 61.360 66.667 0.00 0.00 0.00 4.46
981 1029 2.851102 ACAGCACAGCAGGGACCT 60.851 61.111 0.00 0.00 0.00 3.85
982 1030 2.046507 CAGCACAGCAGGGACCTC 60.047 66.667 0.00 0.00 0.00 3.85
983 1031 2.527624 AGCACAGCAGGGACCTCA 60.528 61.111 0.00 0.00 0.00 3.86
984 1032 2.359230 GCACAGCAGGGACCTCAC 60.359 66.667 0.00 0.00 0.00 3.51
990 1038 2.283966 CAGGGACCTCACCGGAGT 60.284 66.667 9.46 0.00 39.64 3.85
1050 1113 4.194720 GAGACGCGGCAGTCGGAT 62.195 66.667 17.71 0.00 45.26 4.18
1140 1203 0.591994 CTCTCATCGTGCTCTGCTCG 60.592 60.000 7.55 7.55 45.04 5.03
1174 1311 2.640302 GCTCTGCTCGTGTCCCTCA 61.640 63.158 0.00 0.00 0.00 3.86
1176 1313 0.318441 CTCTGCTCGTGTCCCTCAAA 59.682 55.000 0.00 0.00 0.00 2.69
1177 1314 0.976641 TCTGCTCGTGTCCCTCAAAT 59.023 50.000 0.00 0.00 0.00 2.32
1179 1316 2.166459 TCTGCTCGTGTCCCTCAAATAG 59.834 50.000 0.00 0.00 0.00 1.73
1236 1461 8.021973 GCTCTATGGATGAATGAATGAATGAAC 58.978 37.037 0.00 0.00 0.00 3.18
1288 1579 9.630098 ACAACTATCTAAATTTCAATGCAACTG 57.370 29.630 0.00 0.00 0.00 3.16
1289 1580 9.630098 CAACTATCTAAATTTCAATGCAACTGT 57.370 29.630 0.00 0.00 0.00 3.55
1295 1586 9.677567 TCTAAATTTCAATGCAACTGTTTCTAC 57.322 29.630 0.00 0.00 0.00 2.59
1296 1587 9.462174 CTAAATTTCAATGCAACTGTTTCTACA 57.538 29.630 0.00 0.00 0.00 2.74
1446 1742 5.256474 CCTCTTTGTCTCTCTCTCTCTCTT 58.744 45.833 0.00 0.00 0.00 2.85
1448 1744 6.349611 CCTCTTTGTCTCTCTCTCTCTCTTTG 60.350 46.154 0.00 0.00 0.00 2.77
1452 1748 5.003160 TGTCTCTCTCTCTCTCTTTGTCTG 58.997 45.833 0.00 0.00 0.00 3.51
1456 1752 4.000325 CTCTCTCTCTCTTTGTCTGTCGA 59.000 47.826 0.00 0.00 0.00 4.20
1459 1755 5.053140 TCTCTCTCTTTGTCTGTCGAATG 57.947 43.478 0.00 0.00 0.00 2.67
1460 1756 4.762251 TCTCTCTCTTTGTCTGTCGAATGA 59.238 41.667 0.00 0.00 0.00 2.57
1461 1757 5.241728 TCTCTCTCTTTGTCTGTCGAATGAA 59.758 40.000 0.00 0.00 0.00 2.57
1462 1758 6.030548 TCTCTCTTTGTCTGTCGAATGAAT 57.969 37.500 0.00 0.00 0.00 2.57
1463 1759 5.866092 TCTCTCTTTGTCTGTCGAATGAATG 59.134 40.000 0.00 0.00 0.00 2.67
1464 1760 5.783111 TCTCTTTGTCTGTCGAATGAATGA 58.217 37.500 0.00 0.00 0.00 2.57
1466 1762 5.296748 TCTTTGTCTGTCGAATGAATGACA 58.703 37.500 0.00 0.00 42.49 3.58
1469 1765 4.568956 TGTCTGTCGAATGAATGACATGT 58.431 39.130 0.00 0.00 43.59 3.21
1470 1766 4.627035 TGTCTGTCGAATGAATGACATGTC 59.373 41.667 19.27 19.27 43.59 3.06
1471 1767 4.867047 GTCTGTCGAATGAATGACATGTCT 59.133 41.667 25.55 7.38 43.59 3.41
1472 1768 5.349817 GTCTGTCGAATGAATGACATGTCTT 59.650 40.000 25.55 17.25 43.59 3.01
1473 1769 5.578336 TCTGTCGAATGAATGACATGTCTTC 59.422 40.000 25.55 23.08 43.59 2.87
1474 1770 4.631377 TGTCGAATGAATGACATGTCTTCC 59.369 41.667 25.55 9.19 40.02 3.46
1475 1771 4.872691 GTCGAATGAATGACATGTCTTCCT 59.127 41.667 25.55 15.67 39.39 3.36
1478 1774 7.064609 GTCGAATGAATGACATGTCTTCCTAAA 59.935 37.037 25.55 11.26 39.39 1.85
1480 1776 8.400947 CGAATGAATGACATGTCTTCCTAAATT 58.599 33.333 25.55 18.37 39.39 1.82
1481 1777 9.727627 GAATGAATGACATGTCTTCCTAAATTC 57.272 33.333 25.55 21.54 39.39 2.17
1483 1779 8.634335 TGAATGACATGTCTTCCTAAATTCAA 57.366 30.769 25.55 11.95 30.78 2.69
1512 1829 2.125350 CAGCAAGAGGAGCCGGTC 60.125 66.667 1.90 0.00 0.00 4.79
1803 2132 4.154737 TGCTGCAAATCTTGTATGACTGAC 59.845 41.667 0.00 0.00 0.00 3.51
1805 2134 5.673068 GCTGCAAATCTTGTATGACTGACTG 60.673 44.000 0.00 0.00 0.00 3.51
1806 2135 5.550290 TGCAAATCTTGTATGACTGACTGA 58.450 37.500 0.00 0.00 0.00 3.41
1809 2138 7.823799 TGCAAATCTTGTATGACTGACTGATTA 59.176 33.333 0.00 0.00 0.00 1.75
1810 2139 8.333908 GCAAATCTTGTATGACTGACTGATTAG 58.666 37.037 0.00 0.00 0.00 1.73
1812 2141 9.950496 AAATCTTGTATGACTGACTGATTAGTT 57.050 29.630 0.00 0.00 37.25 2.24
1813 2142 8.939201 ATCTTGTATGACTGACTGATTAGTTG 57.061 34.615 0.00 0.00 37.25 3.16
1854 2206 2.106332 GCAGGCATGGCATTGCTC 59.894 61.111 22.64 8.21 42.38 4.26
1855 2207 2.423898 GCAGGCATGGCATTGCTCT 61.424 57.895 22.64 9.89 42.38 4.09
1856 2208 1.437573 CAGGCATGGCATTGCTCTG 59.562 57.895 22.64 17.09 42.38 3.35
1857 2209 2.106332 GGCATGGCATTGCTCTGC 59.894 61.111 15.47 20.48 42.38 4.26
1859 2211 1.105167 GGCATGGCATTGCTCTGCTA 61.105 55.000 24.62 5.48 42.38 3.49
1860 2212 0.959553 GCATGGCATTGCTCTGCTAT 59.040 50.000 21.01 7.40 43.22 2.97
1873 2258 6.106648 TGCTCTGCTATTACTGCATCTAAT 57.893 37.500 0.00 0.00 39.86 1.73
1874 2259 5.930569 TGCTCTGCTATTACTGCATCTAATG 59.069 40.000 6.93 0.00 39.86 1.90
1890 2275 6.591261 CATCTAATGATGCACTGATTCTTCG 58.409 40.000 0.00 0.00 42.83 3.79
1902 2287 6.615088 CACTGATTCTTCGGTCATTTCATTT 58.385 36.000 0.00 0.00 39.53 2.32
1903 2288 6.525628 CACTGATTCTTCGGTCATTTCATTTG 59.474 38.462 0.00 0.00 39.53 2.32
1904 2289 5.953183 TGATTCTTCGGTCATTTCATTTGG 58.047 37.500 0.00 0.00 0.00 3.28
1905 2290 4.782019 TTCTTCGGTCATTTCATTTGGG 57.218 40.909 0.00 0.00 0.00 4.12
1906 2291 3.088532 TCTTCGGTCATTTCATTTGGGG 58.911 45.455 0.00 0.00 0.00 4.96
1967 2353 5.287226 CCGACTAGTTAGGTTATTTCGCAT 58.713 41.667 0.00 0.00 0.00 4.73
1968 2354 5.751990 CCGACTAGTTAGGTTATTTCGCATT 59.248 40.000 0.00 0.00 0.00 3.56
1969 2355 6.292168 CCGACTAGTTAGGTTATTTCGCATTG 60.292 42.308 0.00 0.00 0.00 2.82
2066 2454 9.010029 GTTGGATGGTCTTTCTTCTTACAATAA 57.990 33.333 0.00 0.00 0.00 1.40
2067 2455 9.753674 TTGGATGGTCTTTCTTCTTACAATAAT 57.246 29.630 0.00 0.00 0.00 1.28
2068 2456 9.753674 TGGATGGTCTTTCTTCTTACAATAATT 57.246 29.630 0.00 0.00 0.00 1.40
2186 2574 5.063944 CCGTCAAGTCATTAACTCTCCAATG 59.936 44.000 0.00 0.00 37.17 2.82
2196 2584 4.457834 AACTCTCCAATGTCGTAGGAAG 57.542 45.455 0.00 0.00 0.00 3.46
2295 2683 3.897141 TTTTTGAATTAATCCGCCCCC 57.103 42.857 0.00 0.00 0.00 5.40
2466 2883 4.455190 GCTGAAGCTTTTCTCATTGTCTCT 59.545 41.667 0.00 0.00 38.21 3.10
2467 2884 5.048852 GCTGAAGCTTTTCTCATTGTCTCTT 60.049 40.000 0.00 0.00 38.21 2.85
2468 2885 6.551385 TGAAGCTTTTCTCATTGTCTCTTC 57.449 37.500 0.00 0.00 0.00 2.87
2469 2886 6.294473 TGAAGCTTTTCTCATTGTCTCTTCT 58.706 36.000 0.00 0.00 0.00 2.85
2470 2887 6.204301 TGAAGCTTTTCTCATTGTCTCTTCTG 59.796 38.462 0.00 0.00 0.00 3.02
2471 2888 4.455190 AGCTTTTCTCATTGTCTCTTCTGC 59.545 41.667 0.00 0.00 0.00 4.26
2472 2889 4.455190 GCTTTTCTCATTGTCTCTTCTGCT 59.545 41.667 0.00 0.00 0.00 4.24
2473 2890 5.048852 GCTTTTCTCATTGTCTCTTCTGCTT 60.049 40.000 0.00 0.00 0.00 3.91
2474 2891 6.551385 TTTTCTCATTGTCTCTTCTGCTTC 57.449 37.500 0.00 0.00 0.00 3.86
2558 2975 0.829990 GCTTCTAGGCTGCTCTTCCT 59.170 55.000 0.00 0.00 36.51 3.36
3050 3467 6.867293 GGCTATGGTCGTTATTAGGTAAGAAG 59.133 42.308 0.00 0.00 0.00 2.85
3053 3470 6.212888 TGGTCGTTATTAGGTAAGAAGACC 57.787 41.667 13.33 13.33 39.95 3.85
3054 3471 5.127682 TGGTCGTTATTAGGTAAGAAGACCC 59.872 44.000 15.50 3.18 40.74 4.46
3055 3472 5.362143 GGTCGTTATTAGGTAAGAAGACCCT 59.638 44.000 11.08 0.00 40.74 4.34
3056 3473 6.127225 GGTCGTTATTAGGTAAGAAGACCCTT 60.127 42.308 11.08 0.00 40.74 3.95
3057 3474 6.977502 GTCGTTATTAGGTAAGAAGACCCTTC 59.022 42.308 0.00 0.00 40.74 3.46
3058 3475 6.097412 TCGTTATTAGGTAAGAAGACCCTTCC 59.903 42.308 3.33 0.00 40.74 3.46
3059 3476 6.590068 GTTATTAGGTAAGAAGACCCTTCCC 58.410 44.000 3.33 0.00 40.74 3.97
3060 3477 1.968278 AGGTAAGAAGACCCTTCCCC 58.032 55.000 3.33 2.38 40.74 4.81
3061 3478 0.540454 GGTAAGAAGACCCTTCCCCG 59.460 60.000 3.33 0.00 32.88 5.73
3062 3479 0.540454 GTAAGAAGACCCTTCCCCGG 59.460 60.000 0.00 0.00 0.00 5.73
3063 3480 0.414629 TAAGAAGACCCTTCCCCGGA 59.585 55.000 0.73 0.00 0.00 5.14
3065 3482 2.609921 AAGACCCTTCCCCGGACC 60.610 66.667 0.73 0.00 0.00 4.46
3066 3483 4.735599 AGACCCTTCCCCGGACCC 62.736 72.222 0.73 0.00 0.00 4.46
3067 3484 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3083 3500 2.434185 CTGCGCAAACGGGAGCTA 60.434 61.111 13.05 0.00 40.57 3.32
3084 3501 2.740714 CTGCGCAAACGGGAGCTAC 61.741 63.158 13.05 0.00 40.57 3.58
3085 3502 2.740826 GCGCAAACGGGAGCTACA 60.741 61.111 0.30 0.00 40.57 2.74
3086 3503 2.106683 GCGCAAACGGGAGCTACAT 61.107 57.895 0.30 0.00 40.57 2.29
3087 3504 1.715585 CGCAAACGGGAGCTACATG 59.284 57.895 0.00 0.00 34.97 3.21
3088 3505 1.429423 GCAAACGGGAGCTACATGC 59.571 57.895 0.00 0.00 43.29 4.06
3089 3506 1.305219 GCAAACGGGAGCTACATGCA 61.305 55.000 0.00 0.00 45.94 3.96
3090 3507 0.447801 CAAACGGGAGCTACATGCAC 59.552 55.000 0.00 0.00 45.94 4.57
3094 3511 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3095 3512 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3096 3513 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3097 3514 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3098 3515 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3099 3516 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3183 3660 2.845967 GCGGTGCTACATTTGATTTTCG 59.154 45.455 0.00 0.00 0.00 3.46
3189 3666 4.946772 TGCTACATTTGATTTTCGATCCCA 59.053 37.500 0.00 0.00 0.00 4.37
3194 3671 5.187576 ACATTTGATTTTCGATCCCATTGGT 59.812 36.000 1.20 0.00 0.00 3.67
3232 3709 4.528206 ACTTTTCAGGGTGGATTGATTTCC 59.472 41.667 0.00 0.00 36.24 3.13
3297 3774 1.003233 GCTCAGACCCTTTTCGGCT 60.003 57.895 0.00 0.00 0.00 5.52
3302 3779 0.182775 AGACCCTTTTCGGCTGTGTT 59.817 50.000 0.00 0.00 0.00 3.32
3345 3858 2.742053 CCACCTTGTGTATTTGAGACGG 59.258 50.000 0.00 0.00 0.00 4.79
3369 3882 6.157645 GGATAGTTCATATCAGGTGGGATCAT 59.842 42.308 0.00 0.00 41.94 2.45
3370 3883 5.495926 AGTTCATATCAGGTGGGATCATC 57.504 43.478 0.00 0.00 0.00 2.92
3372 3885 5.370584 AGTTCATATCAGGTGGGATCATCAA 59.629 40.000 0.00 0.00 0.00 2.57
3373 3886 5.494390 TCATATCAGGTGGGATCATCAAG 57.506 43.478 0.00 0.00 0.00 3.02
3374 3887 2.653234 ATCAGGTGGGATCATCAAGC 57.347 50.000 0.00 0.00 0.00 4.01
3375 3888 1.588239 TCAGGTGGGATCATCAAGCT 58.412 50.000 0.00 0.00 0.00 3.74
3376 3889 1.211212 TCAGGTGGGATCATCAAGCTG 59.789 52.381 10.96 10.96 39.04 4.24
3377 3890 0.106819 AGGTGGGATCATCAAGCTGC 60.107 55.000 0.00 0.00 0.00 5.25
3431 3968 6.721318 TCTTAATGGCCTCTTGACAAACTAT 58.279 36.000 3.32 0.00 0.00 2.12
3446 3983 4.468510 ACAAACTATGACGGTGAATCCCTA 59.531 41.667 0.00 0.00 0.00 3.53
3458 3995 4.154942 GTGAATCCCTATGCATTTCCCAT 58.845 43.478 3.54 0.00 0.00 4.00
3464 4001 3.181436 CCCTATGCATTTCCCATCTGACT 60.181 47.826 3.54 0.00 0.00 3.41
3485 4022 7.110155 TGACTCTTTGGAGAAGTAGTTTGTTT 58.890 34.615 0.00 0.00 41.86 2.83
3486 4023 7.065803 TGACTCTTTGGAGAAGTAGTTTGTTTG 59.934 37.037 0.00 0.00 41.86 2.93
3487 4024 6.884836 ACTCTTTGGAGAAGTAGTTTGTTTGT 59.115 34.615 0.00 0.00 41.86 2.83
3488 4025 7.393515 ACTCTTTGGAGAAGTAGTTTGTTTGTT 59.606 33.333 0.00 0.00 41.86 2.83
3489 4026 8.117813 TCTTTGGAGAAGTAGTTTGTTTGTTT 57.882 30.769 0.00 0.00 0.00 2.83
3490 4027 8.026607 TCTTTGGAGAAGTAGTTTGTTTGTTTG 58.973 33.333 0.00 0.00 0.00 2.93
3491 4028 6.827586 TGGAGAAGTAGTTTGTTTGTTTGT 57.172 33.333 0.00 0.00 0.00 2.83
3492 4029 6.848451 TGGAGAAGTAGTTTGTTTGTTTGTC 58.152 36.000 0.00 0.00 0.00 3.18
3534 4075 4.743124 TCGATCCCTGTATGGTATTGGTA 58.257 43.478 0.00 0.00 0.00 3.25
3535 4076 5.338632 TCGATCCCTGTATGGTATTGGTAT 58.661 41.667 0.00 0.00 0.00 2.73
3536 4077 5.783360 TCGATCCCTGTATGGTATTGGTATT 59.217 40.000 0.00 0.00 0.00 1.89
3537 4078 5.874810 CGATCCCTGTATGGTATTGGTATTG 59.125 44.000 0.00 0.00 0.00 1.90
3538 4079 5.576563 TCCCTGTATGGTATTGGTATTGG 57.423 43.478 0.00 0.00 0.00 3.16
3539 4080 4.979039 TCCCTGTATGGTATTGGTATTGGT 59.021 41.667 0.00 0.00 0.00 3.67
3540 4081 6.151767 TCCCTGTATGGTATTGGTATTGGTA 58.848 40.000 0.00 0.00 0.00 3.25
3541 4082 6.795507 TCCCTGTATGGTATTGGTATTGGTAT 59.204 38.462 0.00 0.00 0.00 2.73
3542 4083 7.296150 TCCCTGTATGGTATTGGTATTGGTATT 59.704 37.037 0.00 0.00 0.00 1.89
3543 4084 7.393234 CCCTGTATGGTATTGGTATTGGTATTG 59.607 40.741 0.00 0.00 0.00 1.90
3544 4085 7.393234 CCTGTATGGTATTGGTATTGGTATTGG 59.607 40.741 0.00 0.00 0.00 3.16
3545 4086 7.817440 TGTATGGTATTGGTATTGGTATTGGT 58.183 34.615 0.00 0.00 0.00 3.67
3546 4087 8.946248 TGTATGGTATTGGTATTGGTATTGGTA 58.054 33.333 0.00 0.00 0.00 3.25
3547 4088 9.969001 GTATGGTATTGGTATTGGTATTGGTAT 57.031 33.333 0.00 0.00 0.00 2.73
3549 4090 8.698973 TGGTATTGGTATTGGTATTGGTATTG 57.301 34.615 0.00 0.00 0.00 1.90
3550 4091 7.726291 TGGTATTGGTATTGGTATTGGTATTGG 59.274 37.037 0.00 0.00 0.00 3.16
3551 4092 7.726738 GGTATTGGTATTGGTATTGGTATTGGT 59.273 37.037 0.00 0.00 0.00 3.67
3552 4093 9.796180 GTATTGGTATTGGTATTGGTATTGGTA 57.204 33.333 0.00 0.00 0.00 3.25
3579 4120 2.489938 TGGTATGCCTTCCAGTTGAC 57.510 50.000 0.16 0.00 35.27 3.18
3584 4125 1.131638 TGCCTTCCAGTTGACTGACT 58.868 50.000 12.54 0.00 46.59 3.41
3589 4130 5.012664 TGCCTTCCAGTTGACTGACTATAAA 59.987 40.000 12.54 0.00 46.59 1.40
3595 4136 8.322906 TCCAGTTGACTGACTATAAAATGTTG 57.677 34.615 12.54 0.00 46.59 3.33
3596 4137 7.936847 TCCAGTTGACTGACTATAAAATGTTGT 59.063 33.333 12.54 0.00 46.59 3.32
3597 4138 9.214957 CCAGTTGACTGACTATAAAATGTTGTA 57.785 33.333 12.54 0.00 46.59 2.41
3600 4141 9.525007 GTTGACTGACTATAAAATGTTGTAACG 57.475 33.333 0.00 0.00 0.00 3.18
3603 4146 6.093082 ACTGACTATAAAATGTTGTAACGCCC 59.907 38.462 0.00 0.00 0.00 6.13
3607 4150 7.659186 ACTATAAAATGTTGTAACGCCCAAAA 58.341 30.769 0.00 0.00 0.00 2.44
3683 4251 1.289160 AAGTTAGCATGGCCTGGAGA 58.711 50.000 3.32 0.00 0.00 3.71
3684 4252 1.516110 AGTTAGCATGGCCTGGAGAT 58.484 50.000 3.32 0.00 0.00 2.75
3685 4253 1.849039 AGTTAGCATGGCCTGGAGATT 59.151 47.619 3.32 0.00 0.00 2.40
3686 4254 2.243221 AGTTAGCATGGCCTGGAGATTT 59.757 45.455 3.32 0.00 0.00 2.17
3687 4255 3.459598 AGTTAGCATGGCCTGGAGATTTA 59.540 43.478 3.32 0.00 0.00 1.40
3688 4256 4.105377 AGTTAGCATGGCCTGGAGATTTAT 59.895 41.667 3.32 0.00 0.00 1.40
3689 4257 3.151912 AGCATGGCCTGGAGATTTATC 57.848 47.619 3.32 0.00 0.00 1.75
3690 4258 2.165998 GCATGGCCTGGAGATTTATCC 58.834 52.381 3.32 0.00 40.03 2.59
3692 4260 3.152341 CATGGCCTGGAGATTTATCCAC 58.848 50.000 3.32 0.00 44.56 4.02
3693 4261 2.492025 TGGCCTGGAGATTTATCCACT 58.508 47.619 3.32 0.00 44.56 4.00
3694 4262 2.439507 TGGCCTGGAGATTTATCCACTC 59.560 50.000 3.32 0.00 44.56 3.51
3695 4263 2.224646 GGCCTGGAGATTTATCCACTCC 60.225 54.545 0.00 0.00 44.56 3.85
3748 4316 6.346919 CCGATCTTGTTGTAAGTTTCACTGAG 60.347 42.308 0.00 0.00 0.00 3.35
3802 4405 4.163078 TGGGGAAAAAGAGTTTGCATTTCA 59.837 37.500 8.49 0.00 32.91 2.69
3806 4409 7.201812 GGGGAAAAAGAGTTTGCATTTCAAAAT 60.202 33.333 8.49 0.00 45.35 1.82
3849 4452 0.677731 GTCAGGCCATGCTGCTTACA 60.678 55.000 5.01 0.00 0.00 2.41
3850 4453 0.256752 TCAGGCCATGCTGCTTACAT 59.743 50.000 5.01 0.00 0.00 2.29
3860 4463 2.289882 TGCTGCTTACATCTGTCTGCTT 60.290 45.455 0.00 0.00 0.00 3.91
3865 4468 3.265791 CTTACATCTGTCTGCTTGGGAC 58.734 50.000 0.00 0.00 0.00 4.46
3866 4469 1.356124 ACATCTGTCTGCTTGGGACT 58.644 50.000 0.00 0.00 35.04 3.85
3896 4499 0.038892 TACAGTCGGACGCCTCAAAC 60.039 55.000 1.89 0.00 0.00 2.93
3897 4500 2.049433 AGTCGGACGCCTCAAACG 60.049 61.111 1.89 0.00 0.00 3.60
3898 4501 3.774702 GTCGGACGCCTCAAACGC 61.775 66.667 0.00 0.00 0.00 4.84
3902 4505 3.723348 GACGCCTCAAACGCCCAC 61.723 66.667 0.00 0.00 0.00 4.61
3919 4522 2.972505 CGCCCGCTTTCTGTGTGT 60.973 61.111 0.00 0.00 0.00 3.72
3924 4527 1.280746 CGCTTTCTGTGTGTGCCAG 59.719 57.895 0.00 0.00 0.00 4.85
3950 4553 1.688735 GCCAACCTTTTCTTTCCTGCT 59.311 47.619 0.00 0.00 0.00 4.24
3991 4607 1.074566 CTGACAAAGGAAGGAGGGCTT 59.925 52.381 0.00 0.00 0.00 4.35
3992 4608 1.202927 TGACAAAGGAAGGAGGGCTTG 60.203 52.381 0.00 0.00 0.00 4.01
3993 4609 0.853530 ACAAAGGAAGGAGGGCTTGT 59.146 50.000 0.00 0.00 0.00 3.16
3994 4610 1.251251 CAAAGGAAGGAGGGCTTGTG 58.749 55.000 0.00 0.00 0.00 3.33
3995 4611 0.113190 AAAGGAAGGAGGGCTTGTGG 59.887 55.000 0.00 0.00 0.00 4.17
3996 4612 2.361737 GGAAGGAGGGCTTGTGGC 60.362 66.667 0.00 0.00 40.90 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 1.790623 GCAAAGATGTGTGCTGCTTTG 59.209 47.619 0.00 0.00 46.01 2.77
164 166 3.464907 CCTGTCATGTAAGAGCATCCAG 58.535 50.000 0.00 0.00 33.66 3.86
198 212 6.843752 TGATGGTAAGTGAAAAGGTTTCCTA 58.156 36.000 0.00 0.00 31.13 2.94
201 215 8.106247 TGTATGATGGTAAGTGAAAAGGTTTC 57.894 34.615 0.00 0.00 0.00 2.78
205 219 8.522830 ACATTTGTATGATGGTAAGTGAAAAGG 58.477 33.333 0.00 0.00 35.65 3.11
235 249 0.038599 TCAGCATTGGAGTGGCACAT 59.961 50.000 21.41 4.74 44.52 3.21
237 251 0.524862 CTTCAGCATTGGAGTGGCAC 59.475 55.000 10.29 10.29 0.00 5.01
320 334 5.437060 GTGATAAGCCCCTGTTTCTATGAA 58.563 41.667 0.00 0.00 0.00 2.57
333 347 2.054799 TGGACATAGGGTGATAAGCCC 58.945 52.381 0.00 0.00 46.43 5.19
360 374 2.447443 GGAAGGGCTTTAACCAAGAGG 58.553 52.381 0.00 0.00 42.21 3.69
479 494 2.495270 TGTTTCAGCAAGCACTTCCAAA 59.505 40.909 0.00 0.00 0.00 3.28
487 502 2.751259 GGAGATCATGTTTCAGCAAGCA 59.249 45.455 0.00 0.00 0.00 3.91
490 505 2.751259 GCAGGAGATCATGTTTCAGCAA 59.249 45.455 0.00 0.00 0.00 3.91
530 545 1.068588 GTTGGGCTTCAAACTTGGACC 59.931 52.381 0.00 0.00 37.08 4.46
555 570 3.450817 TGAGAAACCGATCAATCCAGCTA 59.549 43.478 0.00 0.00 0.00 3.32
598 615 5.391950 CCAACTCATGTTCTATCAAAACCCG 60.392 44.000 0.00 0.00 33.52 5.28
632 649 4.871933 AAAAATTACAAGCCACAGAGGG 57.128 40.909 0.00 0.00 38.09 4.30
674 692 9.023962 ACCCGTAGAACAATCGGTATATATTAA 57.976 33.333 0.00 0.00 42.30 1.40
677 705 7.472334 AACCCGTAGAACAATCGGTATATAT 57.528 36.000 0.00 0.00 42.30 0.86
684 712 1.657094 CGAAACCCGTAGAACAATCGG 59.343 52.381 0.00 0.00 43.30 4.18
716 744 4.686839 ATTTTAGCTCAGGCGTCTTTTC 57.313 40.909 0.00 0.00 44.37 2.29
717 745 4.321230 CCAATTTTAGCTCAGGCGTCTTTT 60.321 41.667 0.00 0.00 44.37 2.27
718 746 3.191371 CCAATTTTAGCTCAGGCGTCTTT 59.809 43.478 0.00 0.00 44.37 2.52
719 747 2.749621 CCAATTTTAGCTCAGGCGTCTT 59.250 45.455 0.00 0.00 44.37 3.01
720 748 2.290323 ACCAATTTTAGCTCAGGCGTCT 60.290 45.455 0.00 0.00 44.37 4.18
721 749 2.084546 ACCAATTTTAGCTCAGGCGTC 58.915 47.619 0.00 0.00 44.37 5.19
722 750 2.084546 GACCAATTTTAGCTCAGGCGT 58.915 47.619 0.00 0.00 44.37 5.68
723 751 2.352960 GAGACCAATTTTAGCTCAGGCG 59.647 50.000 0.00 0.00 44.37 5.52
724 752 3.376546 CAGAGACCAATTTTAGCTCAGGC 59.623 47.826 0.00 0.00 39.06 4.85
725 753 4.836825 TCAGAGACCAATTTTAGCTCAGG 58.163 43.478 0.00 0.00 0.00 3.86
726 754 5.936956 AGTTCAGAGACCAATTTTAGCTCAG 59.063 40.000 0.00 0.00 0.00 3.35
727 755 5.869579 AGTTCAGAGACCAATTTTAGCTCA 58.130 37.500 0.00 0.00 0.00 4.26
728 756 5.062809 CGAGTTCAGAGACCAATTTTAGCTC 59.937 44.000 0.00 0.00 0.00 4.09
729 757 4.932200 CGAGTTCAGAGACCAATTTTAGCT 59.068 41.667 0.00 0.00 0.00 3.32
730 758 4.093556 CCGAGTTCAGAGACCAATTTTAGC 59.906 45.833 0.00 0.00 0.00 3.09
731 759 4.631813 CCCGAGTTCAGAGACCAATTTTAG 59.368 45.833 0.00 0.00 0.00 1.85
732 760 4.575885 CCCGAGTTCAGAGACCAATTTTA 58.424 43.478 0.00 0.00 0.00 1.52
733 761 3.412386 CCCGAGTTCAGAGACCAATTTT 58.588 45.455 0.00 0.00 0.00 1.82
734 762 2.876079 GCCCGAGTTCAGAGACCAATTT 60.876 50.000 0.00 0.00 0.00 1.82
735 763 1.339151 GCCCGAGTTCAGAGACCAATT 60.339 52.381 0.00 0.00 0.00 2.32
736 764 0.250513 GCCCGAGTTCAGAGACCAAT 59.749 55.000 0.00 0.00 0.00 3.16
737 765 0.832135 AGCCCGAGTTCAGAGACCAA 60.832 55.000 0.00 0.00 0.00 3.67
738 766 1.228894 AGCCCGAGTTCAGAGACCA 60.229 57.895 0.00 0.00 0.00 4.02
739 767 1.216710 CAGCCCGAGTTCAGAGACC 59.783 63.158 0.00 0.00 0.00 3.85
740 768 0.820871 ATCAGCCCGAGTTCAGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
741 769 0.820226 CATCAGCCCGAGTTCAGAGA 59.180 55.000 0.00 0.00 0.00 3.10
742 770 0.179089 CCATCAGCCCGAGTTCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
743 771 0.904865 ACCATCAGCCCGAGTTCAGA 60.905 55.000 0.00 0.00 0.00 3.27
744 772 0.460987 GACCATCAGCCCGAGTTCAG 60.461 60.000 0.00 0.00 0.00 3.02
745 773 1.596934 GACCATCAGCCCGAGTTCA 59.403 57.895 0.00 0.00 0.00 3.18
746 774 1.153349 GGACCATCAGCCCGAGTTC 60.153 63.158 0.00 0.00 0.00 3.01
747 775 1.274703 ATGGACCATCAGCCCGAGTT 61.275 55.000 0.00 0.00 0.00 3.01
748 776 1.690633 ATGGACCATCAGCCCGAGT 60.691 57.895 0.00 0.00 0.00 4.18
749 777 1.227764 CATGGACCATCAGCCCGAG 60.228 63.158 3.21 0.00 0.00 4.63
750 778 1.056125 ATCATGGACCATCAGCCCGA 61.056 55.000 3.21 0.00 0.00 5.14
751 779 0.887836 CATCATGGACCATCAGCCCG 60.888 60.000 3.21 0.00 0.00 6.13
752 780 0.538977 CCATCATGGACCATCAGCCC 60.539 60.000 3.21 0.00 40.96 5.19
753 781 0.475475 TCCATCATGGACCATCAGCC 59.525 55.000 0.66 0.00 42.67 4.85
754 782 1.142465 ACTCCATCATGGACCATCAGC 59.858 52.381 0.66 0.00 42.67 4.26
755 783 2.172082 ACACTCCATCATGGACCATCAG 59.828 50.000 0.66 0.00 42.67 2.90
756 784 2.092807 CACACTCCATCATGGACCATCA 60.093 50.000 0.66 0.00 42.67 3.07
757 785 2.092753 ACACACTCCATCATGGACCATC 60.093 50.000 0.66 0.00 42.67 3.51
758 786 1.918262 ACACACTCCATCATGGACCAT 59.082 47.619 0.66 0.00 42.67 3.55
759 787 1.361204 ACACACTCCATCATGGACCA 58.639 50.000 0.66 0.00 42.67 4.02
760 788 3.845781 ATACACACTCCATCATGGACC 57.154 47.619 0.66 0.00 42.67 4.46
761 789 6.102663 GCTATATACACACTCCATCATGGAC 58.897 44.000 0.66 0.00 42.67 4.02
762 790 5.779771 TGCTATATACACACTCCATCATGGA 59.220 40.000 6.13 6.13 45.98 3.41
763 791 6.041423 TGCTATATACACACTCCATCATGG 57.959 41.667 0.00 0.00 39.43 3.66
764 792 5.579904 GCTGCTATATACACACTCCATCATG 59.420 44.000 0.00 0.00 0.00 3.07
765 793 5.483231 AGCTGCTATATACACACTCCATCAT 59.517 40.000 0.00 0.00 0.00 2.45
766 794 4.835056 AGCTGCTATATACACACTCCATCA 59.165 41.667 0.00 0.00 0.00 3.07
767 795 5.398603 AGCTGCTATATACACACTCCATC 57.601 43.478 0.00 0.00 0.00 3.51
768 796 5.545588 CAAGCTGCTATATACACACTCCAT 58.454 41.667 0.90 0.00 0.00 3.41
769 797 4.740634 GCAAGCTGCTATATACACACTCCA 60.741 45.833 0.90 0.00 40.96 3.86
770 798 3.743396 GCAAGCTGCTATATACACACTCC 59.257 47.826 0.90 0.00 40.96 3.85
771 799 3.743396 GGCAAGCTGCTATATACACACTC 59.257 47.826 0.90 0.00 44.28 3.51
772 800 3.733337 GGCAAGCTGCTATATACACACT 58.267 45.455 0.90 0.00 44.28 3.55
773 801 2.476619 CGGCAAGCTGCTATATACACAC 59.523 50.000 0.90 0.00 44.28 3.82
774 802 2.102420 ACGGCAAGCTGCTATATACACA 59.898 45.455 0.90 0.00 44.28 3.72
775 803 2.476619 CACGGCAAGCTGCTATATACAC 59.523 50.000 0.90 0.00 44.28 2.90
776 804 2.364002 TCACGGCAAGCTGCTATATACA 59.636 45.455 0.90 0.00 44.28 2.29
777 805 3.026630 TCACGGCAAGCTGCTATATAC 57.973 47.619 0.90 0.00 44.28 1.47
778 806 3.744238 TTCACGGCAAGCTGCTATATA 57.256 42.857 0.90 0.00 44.28 0.86
779 807 2.620251 TTCACGGCAAGCTGCTATAT 57.380 45.000 0.90 0.00 44.28 0.86
780 808 2.279741 CTTTCACGGCAAGCTGCTATA 58.720 47.619 0.90 0.00 44.28 1.31
781 809 1.089920 CTTTCACGGCAAGCTGCTAT 58.910 50.000 0.90 0.00 44.28 2.97
782 810 1.577328 GCTTTCACGGCAAGCTGCTA 61.577 55.000 0.90 0.00 44.28 3.49
783 811 2.912624 GCTTTCACGGCAAGCTGCT 61.913 57.895 0.00 0.00 44.28 4.24
784 812 2.429739 GCTTTCACGGCAAGCTGC 60.430 61.111 0.00 0.00 42.95 5.25
785 813 2.256461 GGCTTTCACGGCAAGCTG 59.744 61.111 13.23 0.00 45.18 4.24
786 814 3.357079 CGGCTTTCACGGCAAGCT 61.357 61.111 13.23 0.00 45.18 3.74
787 815 4.404654 CCGGCTTTCACGGCAAGC 62.405 66.667 6.88 6.88 45.34 4.01
803 831 3.119096 GTTTGCTCGGTCCGCTCC 61.119 66.667 6.34 0.00 0.00 4.70
804 832 2.048127 AGTTTGCTCGGTCCGCTC 60.048 61.111 6.34 0.69 0.00 5.03
805 833 2.357517 CAGTTTGCTCGGTCCGCT 60.358 61.111 6.34 0.00 0.00 5.52
806 834 1.959226 TTCAGTTTGCTCGGTCCGC 60.959 57.895 6.34 0.00 0.00 5.54
807 835 1.566018 GGTTCAGTTTGCTCGGTCCG 61.566 60.000 4.39 4.39 0.00 4.79
808 836 1.566018 CGGTTCAGTTTGCTCGGTCC 61.566 60.000 0.00 0.00 0.00 4.46
809 837 0.599204 TCGGTTCAGTTTGCTCGGTC 60.599 55.000 0.00 0.00 0.00 4.79
810 838 0.600255 CTCGGTTCAGTTTGCTCGGT 60.600 55.000 0.00 0.00 0.00 4.69
811 839 1.901650 GCTCGGTTCAGTTTGCTCGG 61.902 60.000 0.00 0.00 0.00 4.63
812 840 1.493311 GCTCGGTTCAGTTTGCTCG 59.507 57.895 0.00 0.00 0.00 5.03
813 841 1.869690 GGCTCGGTTCAGTTTGCTC 59.130 57.895 0.00 0.00 0.00 4.26
814 842 1.961277 CGGCTCGGTTCAGTTTGCT 60.961 57.895 0.00 0.00 0.00 3.91
815 843 1.901650 CTCGGCTCGGTTCAGTTTGC 61.902 60.000 0.00 0.00 0.00 3.68
816 844 1.901650 GCTCGGCTCGGTTCAGTTTG 61.902 60.000 0.00 0.00 0.00 2.93
817 845 1.668151 GCTCGGCTCGGTTCAGTTT 60.668 57.895 0.00 0.00 0.00 2.66
818 846 2.048127 GCTCGGCTCGGTTCAGTT 60.048 61.111 0.00 0.00 0.00 3.16
819 847 4.421479 CGCTCGGCTCGGTTCAGT 62.421 66.667 0.00 0.00 0.00 3.41
869 897 1.609208 AGCAAGCTACCCACAAAGTG 58.391 50.000 0.00 0.00 0.00 3.16
870 898 2.364972 AAGCAAGCTACCCACAAAGT 57.635 45.000 0.00 0.00 0.00 2.66
871 899 3.383761 CAAAAGCAAGCTACCCACAAAG 58.616 45.455 0.00 0.00 0.00 2.77
878 906 3.119352 AGCAATAGCAAAAGCAAGCTACC 60.119 43.478 0.00 0.00 45.18 3.18
886 914 5.008118 CCCTAACTCTAGCAATAGCAAAAGC 59.992 44.000 0.00 0.00 45.49 3.51
887 915 6.116126 ACCCTAACTCTAGCAATAGCAAAAG 58.884 40.000 0.00 0.00 45.49 2.27
888 916 6.062258 ACCCTAACTCTAGCAATAGCAAAA 57.938 37.500 0.00 0.00 45.49 2.44
891 919 4.101119 GGAACCCTAACTCTAGCAATAGCA 59.899 45.833 0.00 0.00 45.49 3.49
892 920 4.101119 TGGAACCCTAACTCTAGCAATAGC 59.899 45.833 0.00 0.00 42.56 2.97
893 921 5.364157 AGTGGAACCCTAACTCTAGCAATAG 59.636 44.000 0.00 0.00 37.80 1.73
894 922 5.278061 AGTGGAACCCTAACTCTAGCAATA 58.722 41.667 0.00 0.00 37.80 1.90
975 1023 3.391382 CCACTCCGGTGAGGTCCC 61.391 72.222 11.17 0.00 45.61 4.46
976 1024 3.391382 CCCACTCCGGTGAGGTCC 61.391 72.222 17.16 0.00 45.61 4.46
983 1031 1.229529 ATCCTTCACCCACTCCGGT 60.230 57.895 0.00 0.00 36.18 5.28
984 1032 1.221840 CATCCTTCACCCACTCCGG 59.778 63.158 0.00 0.00 0.00 5.14
990 1038 2.669133 CGGCCTCATCCTTCACCCA 61.669 63.158 0.00 0.00 0.00 4.51
1050 1113 0.900182 TTGAGAAGAGGCGCTCCAGA 60.900 55.000 7.64 0.00 33.74 3.86
1140 1203 1.136695 AGAGCAGAGCAGAGCATACAC 59.863 52.381 0.00 0.00 0.00 2.90
1269 1560 9.677567 GTAGAAACAGTTGCATTGAAATTTAGA 57.322 29.630 5.80 0.00 0.00 2.10
1270 1561 9.462174 TGTAGAAACAGTTGCATTGAAATTTAG 57.538 29.630 5.80 0.00 0.00 1.85
1271 1562 9.979578 ATGTAGAAACAGTTGCATTGAAATTTA 57.020 25.926 5.80 0.00 39.49 1.40
1272 1563 8.891671 ATGTAGAAACAGTTGCATTGAAATTT 57.108 26.923 5.80 0.00 39.49 1.82
1273 1564 9.410556 GTATGTAGAAACAGTTGCATTGAAATT 57.589 29.630 5.80 0.00 39.49 1.82
1274 1565 8.796475 AGTATGTAGAAACAGTTGCATTGAAAT 58.204 29.630 5.80 0.00 39.49 2.17
1275 1566 8.075574 CAGTATGTAGAAACAGTTGCATTGAAA 58.924 33.333 5.80 0.00 39.49 2.69
1276 1567 7.584108 CAGTATGTAGAAACAGTTGCATTGAA 58.416 34.615 5.80 0.00 39.49 2.69
1277 1568 6.348458 GCAGTATGTAGAAACAGTTGCATTGA 60.348 38.462 5.80 0.00 39.49 2.57
1278 1569 5.796935 GCAGTATGTAGAAACAGTTGCATTG 59.203 40.000 0.00 0.00 39.49 2.82
1279 1570 5.473162 TGCAGTATGTAGAAACAGTTGCATT 59.527 36.000 0.00 0.00 41.34 3.56
1280 1571 5.003160 TGCAGTATGTAGAAACAGTTGCAT 58.997 37.500 0.00 0.00 41.34 3.96
1281 1572 4.384940 TGCAGTATGTAGAAACAGTTGCA 58.615 39.130 0.00 9.07 42.68 4.08
1428 1724 5.473162 CAGACAAAGAGAGAGAGAGAGACAA 59.527 44.000 0.00 0.00 0.00 3.18
1446 1742 4.996758 ACATGTCATTCATTCGACAGACAA 59.003 37.500 0.00 0.00 44.83 3.18
1448 1744 4.867047 AGACATGTCATTCATTCGACAGAC 59.133 41.667 27.02 0.00 44.83 3.51
1452 1748 4.872691 AGGAAGACATGTCATTCATTCGAC 59.127 41.667 27.02 12.69 34.09 4.20
1456 1752 9.246670 TGAATTTAGGAAGACATGTCATTCATT 57.753 29.630 27.02 18.86 34.09 2.57
1462 1758 9.076781 TGAATTTGAATTTAGGAAGACATGTCA 57.923 29.630 27.02 5.42 0.00 3.58
1469 1765 8.971073 GGAGGAATGAATTTGAATTTAGGAAGA 58.029 33.333 0.00 0.00 0.00 2.87
1470 1766 8.752187 TGGAGGAATGAATTTGAATTTAGGAAG 58.248 33.333 0.00 0.00 0.00 3.46
1471 1767 8.663209 TGGAGGAATGAATTTGAATTTAGGAA 57.337 30.769 0.00 0.00 0.00 3.36
1472 1768 7.147846 GCTGGAGGAATGAATTTGAATTTAGGA 60.148 37.037 0.00 0.00 0.00 2.94
1473 1769 6.982724 GCTGGAGGAATGAATTTGAATTTAGG 59.017 38.462 0.00 0.00 0.00 2.69
1474 1770 7.549839 TGCTGGAGGAATGAATTTGAATTTAG 58.450 34.615 0.00 0.00 0.00 1.85
1475 1771 7.479352 TGCTGGAGGAATGAATTTGAATTTA 57.521 32.000 0.00 0.00 0.00 1.40
1478 1774 5.718130 TCTTGCTGGAGGAATGAATTTGAAT 59.282 36.000 0.00 0.00 0.00 2.57
1480 1776 4.665451 TCTTGCTGGAGGAATGAATTTGA 58.335 39.130 0.00 0.00 0.00 2.69
1481 1777 4.995124 CTCTTGCTGGAGGAATGAATTTG 58.005 43.478 0.00 0.00 0.00 2.32
1512 1829 2.742372 CTGTCGCGGTTCTTGGGG 60.742 66.667 6.13 0.00 0.00 4.96
1803 2132 8.029522 TCTAGTGTAGAGCAAACAACTAATCAG 58.970 37.037 0.00 0.00 0.00 2.90
1805 2134 8.401046 CTCTAGTGTAGAGCAAACAACTAATC 57.599 38.462 0.00 0.00 45.05 1.75
1873 2258 2.028203 TGACCGAAGAATCAGTGCATCA 60.028 45.455 0.00 0.00 0.00 3.07
1874 2259 2.621338 TGACCGAAGAATCAGTGCATC 58.379 47.619 0.00 0.00 0.00 3.91
1890 2275 1.554617 CCCACCCCAAATGAAATGACC 59.445 52.381 0.00 0.00 0.00 4.02
1902 2287 0.553862 ATGTTATGGACCCCACCCCA 60.554 55.000 0.00 0.00 35.80 4.96
1903 2288 0.185175 GATGTTATGGACCCCACCCC 59.815 60.000 0.00 0.00 35.80 4.95
1904 2289 1.222567 AGATGTTATGGACCCCACCC 58.777 55.000 0.00 0.00 35.80 4.61
1905 2290 2.241176 TGAAGATGTTATGGACCCCACC 59.759 50.000 0.00 0.00 35.80 4.61
1906 2291 3.644966 TGAAGATGTTATGGACCCCAC 57.355 47.619 0.00 0.00 35.80 4.61
1967 2353 2.708216 TTTGAGACCTCAGCACACAA 57.292 45.000 0.00 0.00 41.13 3.33
1968 2354 2.936919 ATTTGAGACCTCAGCACACA 57.063 45.000 0.00 0.00 41.13 3.72
1969 2355 3.406764 AGAATTTGAGACCTCAGCACAC 58.593 45.455 0.00 0.00 41.13 3.82
2186 2574 0.533032 AGAGCAAGCCTTCCTACGAC 59.467 55.000 0.00 0.00 0.00 4.34
2196 2584 2.039405 CAGTGGAGCAGAGCAAGCC 61.039 63.158 0.00 0.00 0.00 4.35
2295 2683 1.615392 CTGGCTCAAGACCCAAAAAGG 59.385 52.381 0.00 0.00 37.03 3.11
2296 2684 2.310538 ACTGGCTCAAGACCCAAAAAG 58.689 47.619 0.00 0.00 0.00 2.27
2297 2685 2.452600 ACTGGCTCAAGACCCAAAAA 57.547 45.000 0.00 0.00 0.00 1.94
2298 2686 2.452600 AACTGGCTCAAGACCCAAAA 57.547 45.000 0.00 0.00 0.00 2.44
2299 2687 2.306847 GAAACTGGCTCAAGACCCAAA 58.693 47.619 0.00 0.00 0.00 3.28
2313 2721 1.747355 GAGGCCATCCACATGAAACTG 59.253 52.381 5.01 0.00 33.74 3.16
2428 2836 2.232756 TCAGCAGCAAACGTACTTCA 57.767 45.000 0.00 0.00 0.00 3.02
2466 2883 5.532406 GGGTTGCAGATAATATGAAGCAGAA 59.468 40.000 0.00 0.00 33.14 3.02
2467 2884 5.065914 GGGTTGCAGATAATATGAAGCAGA 58.934 41.667 0.00 0.00 33.14 4.26
2468 2885 4.217118 GGGGTTGCAGATAATATGAAGCAG 59.783 45.833 0.00 0.00 33.14 4.24
2469 2886 4.144297 GGGGTTGCAGATAATATGAAGCA 58.856 43.478 0.00 0.00 0.00 3.91
2470 2887 3.507622 GGGGGTTGCAGATAATATGAAGC 59.492 47.826 0.00 0.00 0.00 3.86
2471 2888 4.990526 AGGGGGTTGCAGATAATATGAAG 58.009 43.478 0.00 0.00 0.00 3.02
2472 2889 4.665009 AGAGGGGGTTGCAGATAATATGAA 59.335 41.667 0.00 0.00 0.00 2.57
2473 2890 4.242811 AGAGGGGGTTGCAGATAATATGA 58.757 43.478 0.00 0.00 0.00 2.15
2474 2891 4.647564 AGAGGGGGTTGCAGATAATATG 57.352 45.455 0.00 0.00 0.00 1.78
2587 3004 3.429085 CAAAGCAAGATGCCGACAATAC 58.571 45.455 0.00 0.00 46.52 1.89
2904 3321 5.154932 CGATCGTAATCTGGACTGTAATCC 58.845 45.833 7.03 0.00 39.45 3.01
2905 3322 4.617645 GCGATCGTAATCTGGACTGTAATC 59.382 45.833 17.81 0.00 0.00 1.75
2906 3323 4.547532 GCGATCGTAATCTGGACTGTAAT 58.452 43.478 17.81 0.00 0.00 1.89
2907 3324 3.243301 GGCGATCGTAATCTGGACTGTAA 60.243 47.826 17.81 0.00 0.00 2.41
2908 3325 2.292569 GGCGATCGTAATCTGGACTGTA 59.707 50.000 17.81 0.00 0.00 2.74
2909 3326 1.067212 GGCGATCGTAATCTGGACTGT 59.933 52.381 17.81 0.00 0.00 3.55
2910 3327 1.772182 GGCGATCGTAATCTGGACTG 58.228 55.000 17.81 0.00 0.00 3.51
2911 3328 0.311165 CGGCGATCGTAATCTGGACT 59.689 55.000 17.81 0.00 0.00 3.85
2912 3329 2.797515 CGGCGATCGTAATCTGGAC 58.202 57.895 17.81 0.00 0.00 4.02
3050 3467 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3065 3482 3.950794 TAGCTCCCGTTTGCGCAGG 62.951 63.158 11.31 8.90 36.67 4.85
3066 3483 2.434185 TAGCTCCCGTTTGCGCAG 60.434 61.111 11.31 0.00 36.67 5.18
3067 3484 2.740826 GTAGCTCCCGTTTGCGCA 60.741 61.111 5.66 5.66 36.67 6.09
3068 3485 2.106683 ATGTAGCTCCCGTTTGCGC 61.107 57.895 0.00 0.00 36.67 6.09
3069 3486 1.715585 CATGTAGCTCCCGTTTGCG 59.284 57.895 0.00 0.00 37.95 4.85
3071 3488 0.447801 GTGCATGTAGCTCCCGTTTG 59.552 55.000 0.00 0.00 45.94 2.93
3078 3495 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3079 3496 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3080 3497 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3081 3498 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3082 3499 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3088 3505 4.994756 AAAAGGGGCAGCCCGGTG 62.995 66.667 25.18 0.00 46.66 4.94
3089 3506 2.163021 ATAAAAAGGGGCAGCCCGGT 62.163 55.000 25.18 11.58 46.66 5.28
3090 3507 0.975556 AATAAAAAGGGGCAGCCCGG 60.976 55.000 25.18 0.00 46.66 5.73
3091 3508 1.770294 TAATAAAAAGGGGCAGCCCG 58.230 50.000 25.18 0.00 46.66 6.13
3092 3509 6.433847 AATAATAATAAAAAGGGGCAGCCC 57.566 37.500 24.23 24.23 44.51 5.19
3093 3510 8.746052 AAAAATAATAATAAAAAGGGGCAGCC 57.254 30.769 1.26 1.26 0.00 4.85
3125 3602 6.317391 AGCACTTCAAAGATATGCTAGGAAAC 59.683 38.462 4.95 0.00 44.59 2.78
3183 3660 3.306019 GGTCAACAACAACCAATGGGATC 60.306 47.826 3.55 0.00 38.05 3.36
3189 3666 2.167487 GTGTGGGTCAACAACAACCAAT 59.833 45.455 0.00 0.00 37.28 3.16
3194 3671 3.574396 TGAAAAGTGTGGGTCAACAACAA 59.426 39.130 0.00 0.00 0.00 2.83
3232 3709 4.400567 GGATTCCTTCCTTTGTGATCCTTG 59.599 45.833 0.00 0.00 41.78 3.61
3345 3858 6.611613 TGATCCCACCTGATATGAACTATC 57.388 41.667 0.00 0.00 37.36 2.08
3369 3882 2.217750 TCGCTTAAAACAGCAGCTTGA 58.782 42.857 0.00 0.00 40.09 3.02
3370 3883 2.686558 TCGCTTAAAACAGCAGCTTG 57.313 45.000 0.00 0.00 40.09 4.01
3372 3885 2.554032 ACAATCGCTTAAAACAGCAGCT 59.446 40.909 0.00 0.00 40.09 4.24
3373 3886 2.933769 ACAATCGCTTAAAACAGCAGC 58.066 42.857 0.00 0.00 40.09 5.25
3374 3887 4.081761 CGTACAATCGCTTAAAACAGCAG 58.918 43.478 0.00 0.00 40.09 4.24
3375 3888 4.060288 CGTACAATCGCTTAAAACAGCA 57.940 40.909 0.00 0.00 40.09 4.41
3431 3968 1.199615 TGCATAGGGATTCACCGTCA 58.800 50.000 0.00 0.00 40.11 4.35
3446 3983 3.947612 AGAGTCAGATGGGAAATGCAT 57.052 42.857 0.00 0.00 0.00 3.96
3458 3995 6.098409 ACAAACTACTTCTCCAAAGAGTCAGA 59.902 38.462 0.00 0.00 41.26 3.27
3464 4001 7.696992 AACAAACAAACTACTTCTCCAAAGA 57.303 32.000 0.00 0.00 0.00 2.52
3485 4022 5.592054 TCACAACAAACAAACAGACAAACA 58.408 33.333 0.00 0.00 0.00 2.83
3486 4023 6.364706 TCATCACAACAAACAAACAGACAAAC 59.635 34.615 0.00 0.00 0.00 2.93
3487 4024 6.450545 TCATCACAACAAACAAACAGACAAA 58.549 32.000 0.00 0.00 0.00 2.83
3488 4025 6.018589 TCATCACAACAAACAAACAGACAA 57.981 33.333 0.00 0.00 0.00 3.18
3489 4026 5.635417 TCATCACAACAAACAAACAGACA 57.365 34.783 0.00 0.00 0.00 3.41
3490 4027 5.396362 CGATCATCACAACAAACAAACAGAC 59.604 40.000 0.00 0.00 0.00 3.51
3491 4028 5.295540 TCGATCATCACAACAAACAAACAGA 59.704 36.000 0.00 0.00 0.00 3.41
3492 4029 5.509771 TCGATCATCACAACAAACAAACAG 58.490 37.500 0.00 0.00 0.00 3.16
3534 4075 9.890915 AATACCAATACCAATACCAATACCAAT 57.109 29.630 0.00 0.00 0.00 3.16
3535 4076 9.137459 CAATACCAATACCAATACCAATACCAA 57.863 33.333 0.00 0.00 0.00 3.67
3536 4077 7.726291 CCAATACCAATACCAATACCAATACCA 59.274 37.037 0.00 0.00 0.00 3.25
3537 4078 7.726738 ACCAATACCAATACCAATACCAATACC 59.273 37.037 0.00 0.00 0.00 2.73
3538 4079 8.700439 ACCAATACCAATACCAATACCAATAC 57.300 34.615 0.00 0.00 0.00 1.89
3540 4081 9.308000 CATACCAATACCAATACCAATACCAAT 57.692 33.333 0.00 0.00 0.00 3.16
3541 4082 7.231722 GCATACCAATACCAATACCAATACCAA 59.768 37.037 0.00 0.00 0.00 3.67
3542 4083 6.717540 GCATACCAATACCAATACCAATACCA 59.282 38.462 0.00 0.00 0.00 3.25
3543 4084 6.152154 GGCATACCAATACCAATACCAATACC 59.848 42.308 0.00 0.00 35.26 2.73
3544 4085 6.946009 AGGCATACCAATACCAATACCAATAC 59.054 38.462 0.00 0.00 39.06 1.89
3545 4086 7.097623 AGGCATACCAATACCAATACCAATA 57.902 36.000 0.00 0.00 39.06 1.90
3546 4087 5.964288 AGGCATACCAATACCAATACCAAT 58.036 37.500 0.00 0.00 39.06 3.16
3547 4088 5.396057 AGGCATACCAATACCAATACCAA 57.604 39.130 0.00 0.00 39.06 3.67
3548 4089 5.381757 GAAGGCATACCAATACCAATACCA 58.618 41.667 0.00 0.00 39.06 3.25
3549 4090 4.765339 GGAAGGCATACCAATACCAATACC 59.235 45.833 0.00 0.00 39.06 2.73
3550 4091 5.381757 TGGAAGGCATACCAATACCAATAC 58.618 41.667 0.00 0.00 39.06 1.89
3551 4092 5.133660 ACTGGAAGGCATACCAATACCAATA 59.866 40.000 0.00 0.00 39.30 1.90
3552 4093 4.079212 ACTGGAAGGCATACCAATACCAAT 60.079 41.667 0.00 0.00 39.30 3.16
3579 4120 6.092944 TGGGCGTTACAACATTTTATAGTCAG 59.907 38.462 0.00 0.00 0.00 3.51
3589 4130 5.415221 CCATATTTTGGGCGTTACAACATT 58.585 37.500 0.00 0.00 42.33 2.71
3603 4146 4.871557 CCATTGCCACTCAACCATATTTTG 59.128 41.667 0.00 0.00 37.53 2.44
3607 4150 3.386932 ACCATTGCCACTCAACCATAT 57.613 42.857 0.00 0.00 37.53 1.78
3683 4251 5.983333 AAGTGGAGATGGAGTGGATAAAT 57.017 39.130 0.00 0.00 0.00 1.40
3684 4252 7.451731 AATAAGTGGAGATGGAGTGGATAAA 57.548 36.000 0.00 0.00 0.00 1.40
3685 4253 7.092444 ACAAATAAGTGGAGATGGAGTGGATAA 60.092 37.037 0.00 0.00 0.00 1.75
3686 4254 6.386927 ACAAATAAGTGGAGATGGAGTGGATA 59.613 38.462 0.00 0.00 0.00 2.59
3687 4255 5.192522 ACAAATAAGTGGAGATGGAGTGGAT 59.807 40.000 0.00 0.00 0.00 3.41
3688 4256 4.536090 ACAAATAAGTGGAGATGGAGTGGA 59.464 41.667 0.00 0.00 0.00 4.02
3689 4257 4.848357 ACAAATAAGTGGAGATGGAGTGG 58.152 43.478 0.00 0.00 0.00 4.00
3690 4258 6.824305 AAACAAATAAGTGGAGATGGAGTG 57.176 37.500 0.00 0.00 0.00 3.51
3691 4259 6.434340 GGAAAACAAATAAGTGGAGATGGAGT 59.566 38.462 0.00 0.00 0.00 3.85
3692 4260 6.127619 GGGAAAACAAATAAGTGGAGATGGAG 60.128 42.308 0.00 0.00 0.00 3.86
3693 4261 5.714806 GGGAAAACAAATAAGTGGAGATGGA 59.285 40.000 0.00 0.00 0.00 3.41
3694 4262 5.480073 TGGGAAAACAAATAAGTGGAGATGG 59.520 40.000 0.00 0.00 0.00 3.51
3695 4263 6.588719 TGGGAAAACAAATAAGTGGAGATG 57.411 37.500 0.00 0.00 0.00 2.90
3696 4264 7.454380 TCATTGGGAAAACAAATAAGTGGAGAT 59.546 33.333 0.00 0.00 33.48 2.75
3697 4265 6.780031 TCATTGGGAAAACAAATAAGTGGAGA 59.220 34.615 0.00 0.00 33.48 3.71
3698 4266 6.868339 GTCATTGGGAAAACAAATAAGTGGAG 59.132 38.462 0.00 0.00 33.48 3.86
3699 4267 6.239458 GGTCATTGGGAAAACAAATAAGTGGA 60.239 38.462 0.00 0.00 33.48 4.02
3806 4409 7.851228 ACTGATACATAAATTCAGTCAGTCCA 58.149 34.615 0.00 0.00 45.16 4.02
3831 4434 0.256752 ATGTAAGCAGCATGGCCTGA 59.743 50.000 3.32 0.00 35.86 3.86
3849 4452 3.840666 TCTAAAGTCCCAAGCAGACAGAT 59.159 43.478 0.00 0.00 36.68 2.90
3850 4453 3.239449 TCTAAAGTCCCAAGCAGACAGA 58.761 45.455 0.00 0.00 36.68 3.41
3860 4463 4.353777 ACTGTAGATGCTCTAAAGTCCCA 58.646 43.478 9.14 0.00 42.38 4.37
3865 4468 4.602995 GTCCGACTGTAGATGCTCTAAAG 58.397 47.826 8.17 8.17 39.64 1.85
3866 4469 3.064958 CGTCCGACTGTAGATGCTCTAAA 59.935 47.826 0.00 0.00 29.58 1.85
3899 4502 3.726517 CACAGAAAGCGGGCGTGG 61.727 66.667 0.00 0.00 0.00 4.94
3900 4503 2.972505 ACACAGAAAGCGGGCGTG 60.973 61.111 0.00 0.00 0.00 5.34
3901 4504 2.972505 CACACAGAAAGCGGGCGT 60.973 61.111 0.00 0.00 0.00 5.68
3902 4505 2.972505 ACACACAGAAAGCGGGCG 60.973 61.111 0.00 0.00 0.00 6.13
3903 4506 2.639286 CACACACAGAAAGCGGGC 59.361 61.111 0.00 0.00 0.00 6.13
3904 4507 2.639286 GCACACACAGAAAGCGGG 59.361 61.111 0.00 0.00 0.00 6.13
3905 4508 2.121564 CTGGCACACACAGAAAGCGG 62.122 60.000 0.00 0.00 38.20 5.52
3906 4509 1.280746 CTGGCACACACAGAAAGCG 59.719 57.895 0.00 0.00 38.20 4.68
3907 4510 0.740737 AACTGGCACACACAGAAAGC 59.259 50.000 0.00 0.00 39.24 3.51
3908 4511 1.745087 ACAACTGGCACACACAGAAAG 59.255 47.619 0.00 0.00 39.24 2.62
3909 4512 1.742831 GACAACTGGCACACACAGAAA 59.257 47.619 0.00 0.00 39.24 2.52
3910 4513 1.378531 GACAACTGGCACACACAGAA 58.621 50.000 0.00 0.00 39.24 3.02
3911 4514 0.809636 CGACAACTGGCACACACAGA 60.810 55.000 0.00 0.00 39.24 3.41
3912 4515 1.643292 CGACAACTGGCACACACAG 59.357 57.895 0.00 0.00 41.64 3.66
3988 4604 2.559440 TGTTTTTGAATGGCCACAAGC 58.441 42.857 8.16 4.19 42.60 4.01
3991 4607 3.616956 TGTTGTTTTTGAATGGCCACA 57.383 38.095 8.16 0.00 0.00 4.17
3992 4608 3.303924 GCATGTTGTTTTTGAATGGCCAC 60.304 43.478 8.16 0.00 0.00 5.01
3993 4609 2.877168 GCATGTTGTTTTTGAATGGCCA 59.123 40.909 8.56 8.56 0.00 5.36
3994 4610 2.877168 TGCATGTTGTTTTTGAATGGCC 59.123 40.909 0.00 0.00 0.00 5.36
3995 4611 3.560896 AGTGCATGTTGTTTTTGAATGGC 59.439 39.130 0.00 0.00 0.00 4.40
3996 4612 4.809958 TGAGTGCATGTTGTTTTTGAATGG 59.190 37.500 0.00 0.00 0.00 3.16
3997 4613 5.970140 TGAGTGCATGTTGTTTTTGAATG 57.030 34.783 0.00 0.00 0.00 2.67
3998 4614 6.981762 TTTGAGTGCATGTTGTTTTTGAAT 57.018 29.167 0.00 0.00 0.00 2.57
3999 4615 6.791887 TTTTGAGTGCATGTTGTTTTTGAA 57.208 29.167 0.00 0.00 0.00 2.69
4000 4616 6.981762 ATTTTGAGTGCATGTTGTTTTTGA 57.018 29.167 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.