Multiple sequence alignment - TraesCS4B01G396600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G396600 chr4B 100.000 2504 0 0 1 2504 671126086 671123583 0.000000e+00 4625.0
1 TraesCS4B01G396600 chr4B 91.103 281 13 2 1977 2257 671117685 671117417 1.090000e-98 370.0
2 TraesCS4B01G396600 chrUn 91.095 977 42 14 799 1770 28715866 28714930 0.000000e+00 1280.0
3 TraesCS4B01G396600 chrUn 93.443 305 10 3 2203 2504 28714529 28714232 6.360000e-121 444.0
4 TraesCS4B01G396600 chrUn 95.597 159 4 2 1984 2139 28714687 28714529 4.130000e-63 252.0
5 TraesCS4B01G396600 chrUn 90.816 196 4 4 305 500 28716475 28716294 1.490000e-62 250.0
6 TraesCS4B01G396600 chrUn 87.662 154 4 6 669 816 28716038 28715894 5.540000e-37 165.0
7 TraesCS4B01G396600 chrUn 80.435 184 16 6 1 184 28716633 28716470 3.380000e-24 122.0
8 TraesCS4B01G396600 chrUn 88.372 86 4 1 1828 1907 28714910 28714825 5.700000e-17 99.0
9 TraesCS4B01G396600 chr3B 83.065 124 12 6 2061 2178 473536964 473537084 1.230000e-18 104.0
10 TraesCS4B01G396600 chr1D 87.013 77 4 4 127 199 42907007 42906933 5.740000e-12 82.4
11 TraesCS4B01G396600 chr1D 87.324 71 4 3 133 199 42955550 42955481 2.670000e-10 76.8
12 TraesCS4B01G396600 chr7A 95.918 49 2 0 2133 2181 34489300 34489252 2.060000e-11 80.5
13 TraesCS4B01G396600 chr2B 87.671 73 4 4 127 195 675327259 675327330 2.060000e-11 80.5
14 TraesCS4B01G396600 chr3A 79.612 103 15 5 2076 2178 234247834 234247738 4.470000e-08 69.4
15 TraesCS4B01G396600 chr1A 90.698 43 4 0 127 169 12672053 12672095 9.670000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G396600 chr4B 671123583 671126086 2503 True 4625.000000 4625 100.000000 1 2504 1 chr4B.!!$R2 2503
1 TraesCS4B01G396600 chrUn 28714232 28716633 2401 True 373.142857 1280 89.631429 1 2504 7 chrUn.!!$R1 2503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 614 0.250038 AGCAGCGGCATAATCACGAT 60.25 50.0 12.44 0.0 44.61 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2446 0.107268 AGTGTGCTGCATCACTCACA 59.893 50.0 23.05 10.98 40.28 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.994432 GTAAGTAGGTCAGAATTCATTTCATTG 57.006 33.333 8.44 0.00 36.75 2.82
56 57 1.550524 CTGCTTGTGGAGGCTGTAGTA 59.449 52.381 0.00 0.00 0.00 1.82
58 59 1.550976 GCTTGTGGAGGCTGTAGTACT 59.449 52.381 0.00 0.00 0.00 2.73
59 60 2.758979 GCTTGTGGAGGCTGTAGTACTA 59.241 50.000 0.00 0.00 0.00 1.82
60 61 3.181485 GCTTGTGGAGGCTGTAGTACTAG 60.181 52.174 1.87 0.00 0.00 2.57
61 62 3.733883 TGTGGAGGCTGTAGTACTAGT 57.266 47.619 1.87 0.00 0.00 2.57
62 63 3.618351 TGTGGAGGCTGTAGTACTAGTC 58.382 50.000 1.87 0.00 0.00 2.59
63 64 2.950975 GTGGAGGCTGTAGTACTAGTCC 59.049 54.545 1.87 4.99 0.00 3.85
64 65 2.220313 GGAGGCTGTAGTACTAGTCCG 58.780 57.143 1.87 0.00 0.00 4.79
65 66 2.421248 GGAGGCTGTAGTACTAGTCCGT 60.421 54.545 1.87 0.00 0.00 4.69
66 67 2.613133 GAGGCTGTAGTACTAGTCCGTG 59.387 54.545 1.87 0.00 0.00 4.94
67 68 1.065251 GGCTGTAGTACTAGTCCGTGC 59.935 57.143 1.87 2.10 0.00 5.34
68 69 2.015587 GCTGTAGTACTAGTCCGTGCT 58.984 52.381 1.87 0.00 34.23 4.40
69 70 2.422832 GCTGTAGTACTAGTCCGTGCTT 59.577 50.000 1.87 0.00 32.10 3.91
70 71 3.731264 GCTGTAGTACTAGTCCGTGCTTG 60.731 52.174 1.87 0.00 32.10 4.01
71 72 2.163010 TGTAGTACTAGTCCGTGCTTGC 59.837 50.000 1.87 0.00 32.10 4.01
72 73 1.546961 AGTACTAGTCCGTGCTTGCT 58.453 50.000 0.00 0.00 0.00 3.91
73 74 1.893801 AGTACTAGTCCGTGCTTGCTT 59.106 47.619 0.00 0.00 0.00 3.91
74 75 2.299297 AGTACTAGTCCGTGCTTGCTTT 59.701 45.455 0.00 0.00 0.00 3.51
75 76 2.256117 ACTAGTCCGTGCTTGCTTTT 57.744 45.000 0.00 0.00 0.00 2.27
76 77 2.143925 ACTAGTCCGTGCTTGCTTTTC 58.856 47.619 0.00 0.00 0.00 2.29
77 78 2.143122 CTAGTCCGTGCTTGCTTTTCA 58.857 47.619 0.00 0.00 0.00 2.69
87 88 1.341209 CTTGCTTTTCAGTGTTCCCCC 59.659 52.381 0.00 0.00 0.00 5.40
91 92 1.341209 CTTTTCAGTGTTCCCCCTTGC 59.659 52.381 0.00 0.00 0.00 4.01
95 96 0.251297 CAGTGTTCCCCCTTGCATCA 60.251 55.000 0.00 0.00 0.00 3.07
99 100 1.177401 GTTCCCCCTTGCATCAGTTC 58.823 55.000 0.00 0.00 0.00 3.01
104 105 1.675310 CCTTGCATCAGTTCGGCCA 60.675 57.895 2.24 0.00 0.00 5.36
117 118 2.494073 GTTCGGCCATTGTAATTTGGGA 59.506 45.455 2.24 0.00 33.40 4.37
119 120 2.955660 TCGGCCATTGTAATTTGGGATC 59.044 45.455 2.24 0.00 33.40 3.36
125 126 4.566360 CCATTGTAATTTGGGATCGTTTGC 59.434 41.667 0.00 0.00 0.00 3.68
134 135 2.007608 GGGATCGTTTGCTGTAACTCC 58.992 52.381 0.00 0.00 0.00 3.85
137 138 2.902705 TCGTTTGCTGTAACTCCTGT 57.097 45.000 0.00 0.00 0.00 4.00
140 141 1.798813 GTTTGCTGTAACTCCTGTCCG 59.201 52.381 0.00 0.00 0.00 4.79
149 150 1.573108 ACTCCTGTCCGGTTGATGAT 58.427 50.000 0.00 0.00 0.00 2.45
165 166 7.951565 CGGTTGATGATTTTGTTAATTCAAAGC 59.048 33.333 0.00 0.00 38.32 3.51
174 175 1.363145 TAATTCAAAGCCGGTCCGCG 61.363 55.000 5.50 0.00 0.00 6.46
184 185 4.699522 GGTCCGCGAGCCTTGGTT 62.700 66.667 8.23 0.00 0.00 3.67
185 186 3.119096 GTCCGCGAGCCTTGGTTC 61.119 66.667 8.23 0.00 0.00 3.62
186 187 3.311110 TCCGCGAGCCTTGGTTCT 61.311 61.111 8.23 0.00 0.00 3.01
187 188 1.980232 TCCGCGAGCCTTGGTTCTA 60.980 57.895 8.23 0.00 0.00 2.10
188 189 1.079405 CCGCGAGCCTTGGTTCTAA 60.079 57.895 8.23 0.00 0.00 2.10
189 190 0.672401 CCGCGAGCCTTGGTTCTAAA 60.672 55.000 8.23 0.00 0.00 1.85
190 191 1.153353 CGCGAGCCTTGGTTCTAAAA 58.847 50.000 0.00 0.00 0.00 1.52
191 192 1.533731 CGCGAGCCTTGGTTCTAAAAA 59.466 47.619 0.00 0.00 0.00 1.94
286 287 8.701908 TGTAGTAGTGTAATTAGGGTATCCAG 57.298 38.462 0.00 0.00 34.83 3.86
287 288 6.667558 AGTAGTGTAATTAGGGTATCCAGC 57.332 41.667 0.00 0.00 34.83 4.85
288 289 4.976540 AGTGTAATTAGGGTATCCAGCC 57.023 45.455 0.00 0.00 43.09 4.85
289 290 3.651423 AGTGTAATTAGGGTATCCAGCCC 59.349 47.826 0.00 0.00 43.87 5.19
295 296 4.564110 GGTATCCAGCCCCGGCAC 62.564 72.222 8.74 0.00 44.88 5.01
296 297 3.480133 GTATCCAGCCCCGGCACT 61.480 66.667 8.74 0.00 44.88 4.40
297 298 3.161450 TATCCAGCCCCGGCACTC 61.161 66.667 8.74 0.00 44.88 3.51
298 299 3.993865 TATCCAGCCCCGGCACTCA 62.994 63.158 8.74 0.00 44.88 3.41
300 301 4.431131 CCAGCCCCGGCACTCAAT 62.431 66.667 8.74 0.00 44.88 2.57
301 302 2.361610 CAGCCCCGGCACTCAATT 60.362 61.111 8.74 0.00 44.88 2.32
302 303 2.361610 AGCCCCGGCACTCAATTG 60.362 61.111 8.74 0.00 44.88 2.32
303 304 3.451894 GCCCCGGCACTCAATTGG 61.452 66.667 5.42 0.00 41.49 3.16
304 305 3.451894 CCCCGGCACTCAATTGGC 61.452 66.667 5.42 0.82 38.68 4.52
305 306 2.361610 CCCGGCACTCAATTGGCT 60.362 61.111 5.42 0.00 39.89 4.75
306 307 1.978617 CCCGGCACTCAATTGGCTT 60.979 57.895 5.42 0.00 39.89 4.35
307 308 1.213537 CCGGCACTCAATTGGCTTG 59.786 57.895 5.42 1.77 39.89 4.01
369 370 2.033141 AGCGGTCACATGCTTGCT 59.967 55.556 0.00 0.00 38.57 3.91
428 429 1.034292 GGCCCCATCTCTCAAACTGC 61.034 60.000 0.00 0.00 0.00 4.40
437 438 0.541998 TCTCAAACTGCGAGAGGGGA 60.542 55.000 0.00 0.00 34.59 4.81
438 439 0.539051 CTCAAACTGCGAGAGGGGAT 59.461 55.000 0.00 0.00 31.84 3.85
439 440 0.537188 TCAAACTGCGAGAGGGGATC 59.463 55.000 0.00 0.00 0.00 3.36
440 441 0.807667 CAAACTGCGAGAGGGGATCG 60.808 60.000 0.00 0.00 43.00 3.69
441 442 0.970937 AAACTGCGAGAGGGGATCGA 60.971 55.000 0.00 0.00 42.76 3.59
442 443 1.388065 AACTGCGAGAGGGGATCGAG 61.388 60.000 0.00 0.00 42.76 4.04
443 444 2.519541 TGCGAGAGGGGATCGAGG 60.520 66.667 0.00 0.00 42.76 4.63
444 445 3.984749 GCGAGAGGGGATCGAGGC 61.985 72.222 0.00 0.00 42.76 4.70
445 446 2.203422 CGAGAGGGGATCGAGGCT 60.203 66.667 0.00 0.00 42.76 4.58
446 447 2.560119 CGAGAGGGGATCGAGGCTG 61.560 68.421 0.00 0.00 42.76 4.85
447 448 2.841988 AGAGGGGATCGAGGCTGC 60.842 66.667 0.00 0.00 0.00 5.25
448 449 3.157252 GAGGGGATCGAGGCTGCA 61.157 66.667 0.50 0.00 0.00 4.41
449 450 2.447379 AGGGGATCGAGGCTGCAT 60.447 61.111 0.50 0.00 0.00 3.96
450 451 2.031768 GGGGATCGAGGCTGCATC 59.968 66.667 3.86 3.86 0.00 3.91
500 501 4.561752 AGTAGGTGGCTCTCTCCATAAAT 58.438 43.478 0.00 0.00 38.57 1.40
502 503 6.143915 AGTAGGTGGCTCTCTCCATAAATAA 58.856 40.000 0.00 0.00 38.57 1.40
527 556 4.741431 GGAATTGAATTCTGCGGGAAGCT 61.741 47.826 16.58 0.00 40.26 3.74
528 557 5.460742 GGAATTGAATTCTGCGGGAAGCTA 61.461 45.833 16.58 0.00 40.26 3.32
529 558 7.215998 GGAATTGAATTCTGCGGGAAGCTAG 62.216 48.000 16.58 0.00 40.26 3.42
535 564 2.512515 GCGGGAAGCTAGGTGCAG 60.513 66.667 1.52 0.00 45.94 4.41
536 565 3.019003 GCGGGAAGCTAGGTGCAGA 62.019 63.158 1.52 0.00 45.94 4.26
537 566 1.153549 CGGGAAGCTAGGTGCAGAC 60.154 63.158 1.52 0.00 45.94 3.51
538 567 1.153549 GGGAAGCTAGGTGCAGACG 60.154 63.158 1.52 0.00 45.94 4.18
539 568 1.811679 GGAAGCTAGGTGCAGACGC 60.812 63.158 1.52 0.00 45.94 5.19
547 576 4.796231 GTGCAGACGCCGGATCGT 62.796 66.667 5.05 6.12 46.38 3.73
548 577 4.794439 TGCAGACGCCGGATCGTG 62.794 66.667 12.00 6.55 43.42 4.35
550 579 3.822192 CAGACGCCGGATCGTGGA 61.822 66.667 12.00 0.00 43.42 4.02
551 580 3.518998 AGACGCCGGATCGTGGAG 61.519 66.667 12.00 5.88 43.42 3.86
562 591 1.943340 GATCGTGGAGCCCAAATCTTC 59.057 52.381 0.00 0.00 34.18 2.87
577 606 1.816679 CTTCTGCAGCAGCGGCATA 60.817 57.895 21.10 11.23 46.95 3.14
582 611 1.009222 GCAGCAGCGGCATAATCAC 60.009 57.895 13.20 0.00 44.61 3.06
584 613 1.143838 AGCAGCGGCATAATCACGA 59.856 52.632 12.44 0.00 44.61 4.35
585 614 0.250038 AGCAGCGGCATAATCACGAT 60.250 50.000 12.44 0.00 44.61 3.73
586 615 0.588252 GCAGCGGCATAATCACGATT 59.412 50.000 3.18 0.00 40.72 3.34
613 690 4.386413 GCAGCCAGCACTTGTAGT 57.614 55.556 0.00 0.00 44.79 2.73
614 691 3.532896 GCAGCCAGCACTTGTAGTA 57.467 52.632 0.00 0.00 44.79 1.82
615 692 1.808411 GCAGCCAGCACTTGTAGTAA 58.192 50.000 0.00 0.00 44.79 2.24
616 693 1.464997 GCAGCCAGCACTTGTAGTAAC 59.535 52.381 0.00 0.00 44.79 2.50
617 694 2.766313 CAGCCAGCACTTGTAGTAACA 58.234 47.619 0.00 0.00 0.00 2.41
618 695 2.480419 CAGCCAGCACTTGTAGTAACAC 59.520 50.000 0.00 0.00 34.61 3.32
620 697 2.737252 GCCAGCACTTGTAGTAACACTC 59.263 50.000 0.00 0.00 34.61 3.51
621 698 3.326747 CCAGCACTTGTAGTAACACTCC 58.673 50.000 0.00 0.00 34.61 3.85
622 699 3.244078 CCAGCACTTGTAGTAACACTCCA 60.244 47.826 0.00 0.00 34.61 3.86
623 700 4.563580 CCAGCACTTGTAGTAACACTCCAT 60.564 45.833 0.00 0.00 34.61 3.41
625 702 6.163476 CAGCACTTGTAGTAACACTCCATAA 58.837 40.000 0.00 0.00 34.61 1.90
626 703 6.311445 CAGCACTTGTAGTAACACTCCATAAG 59.689 42.308 0.00 0.00 34.61 1.73
627 704 5.063564 GCACTTGTAGTAACACTCCATAAGC 59.936 44.000 0.00 0.00 34.61 3.09
628 705 6.163476 CACTTGTAGTAACACTCCATAAGCA 58.837 40.000 0.00 0.00 34.61 3.91
631 708 6.354794 TGTAGTAACACTCCATAAGCACTT 57.645 37.500 0.00 0.00 0.00 3.16
632 709 6.163476 TGTAGTAACACTCCATAAGCACTTG 58.837 40.000 0.00 0.00 0.00 3.16
633 710 5.228945 AGTAACACTCCATAAGCACTTGT 57.771 39.130 0.00 0.00 0.00 3.16
634 711 6.354794 AGTAACACTCCATAAGCACTTGTA 57.645 37.500 0.00 0.00 0.00 2.41
635 712 6.947464 AGTAACACTCCATAAGCACTTGTAT 58.053 36.000 0.00 0.00 0.00 2.29
637 714 8.537016 AGTAACACTCCATAAGCACTTGTATTA 58.463 33.333 0.00 0.00 0.00 0.98
663 761 3.733443 AAACAAAGCCAACATCACTCC 57.267 42.857 0.00 0.00 0.00 3.85
686 800 4.011517 CGTTGCCCCCGTGGTACT 62.012 66.667 0.00 0.00 36.04 2.73
687 801 2.046604 GTTGCCCCCGTGGTACTC 60.047 66.667 0.00 0.00 36.04 2.59
688 802 3.324108 TTGCCCCCGTGGTACTCC 61.324 66.667 0.00 0.00 36.04 3.85
711 825 9.338622 CTCCTACTTGGGTTAATTAGGTTATTG 57.661 37.037 0.00 0.00 40.66 1.90
712 826 8.838741 TCCTACTTGGGTTAATTAGGTTATTGT 58.161 33.333 0.00 0.00 40.66 2.71
747 861 1.562672 AATACAGCTTCGCCCCACCT 61.563 55.000 0.00 0.00 0.00 4.00
751 865 2.034221 GCTTCGCCCCACCTTCTT 59.966 61.111 0.00 0.00 0.00 2.52
797 915 0.556747 TACCTCCTCCTAGCTCCACC 59.443 60.000 0.00 0.00 0.00 4.61
801 919 2.482333 CCTCCTAGCTCCACCGTCG 61.482 68.421 0.00 0.00 0.00 5.12
906 1071 3.259374 TGTAAGTGCTCCTCTTTCCTCTG 59.741 47.826 0.00 0.00 0.00 3.35
970 1135 6.181190 GCCTCTTAATTTCTCACCTAAACCT 58.819 40.000 0.00 0.00 0.00 3.50
973 1138 7.665974 CCTCTTAATTTCTCACCTAAACCTTGT 59.334 37.037 0.00 0.00 0.00 3.16
976 1141 4.781775 TTTCTCACCTAAACCTTGTGGA 57.218 40.909 0.00 0.00 37.04 4.02
1031 1196 4.613929 GCAGAGTGCTCTCAAGGG 57.386 61.111 17.51 5.67 42.66 3.95
1032 1197 1.676384 GCAGAGTGCTCTCAAGGGT 59.324 57.895 17.51 0.00 42.66 4.34
1033 1198 0.673022 GCAGAGTGCTCTCAAGGGTG 60.673 60.000 17.51 7.88 42.66 4.61
1088 1253 2.509561 GGGCCTCTTCGTCTTCGC 60.510 66.667 0.84 0.00 36.96 4.70
1151 1316 2.590575 CCCCAGCGTTTGTGTCGT 60.591 61.111 0.00 0.00 0.00 4.34
1152 1317 2.631428 CCCAGCGTTTGTGTCGTG 59.369 61.111 0.00 0.00 0.00 4.35
1212 1377 3.386402 CCTACCTCTTGTTCTCCATCCTC 59.614 52.174 0.00 0.00 0.00 3.71
1333 1498 1.406219 CCTGTCGTTCGTGAGCATCG 61.406 60.000 0.00 0.00 38.61 3.84
1352 1517 2.622962 TTCTTCTCGCGGTGCTCGA 61.623 57.895 6.13 0.00 42.43 4.04
1353 1518 1.934220 TTCTTCTCGCGGTGCTCGAT 61.934 55.000 6.13 0.00 42.43 3.59
1355 1520 1.078759 CTTCTCGCGGTGCTCGATTT 61.079 55.000 6.13 0.00 42.43 2.17
1360 1525 1.480219 CGCGGTGCTCGATTTCTACC 61.480 60.000 0.00 0.00 42.43 3.18
1364 1529 1.207329 GGTGCTCGATTTCTACCTGGT 59.793 52.381 4.05 4.05 0.00 4.00
1479 1644 0.110599 CCTACTATGAGCTCGCGACG 60.111 60.000 3.71 2.50 0.00 5.12
1539 1704 5.801531 TTATGGCTCGACTATTACCATGT 57.198 39.130 3.14 0.00 41.18 3.21
1540 1705 3.728076 TGGCTCGACTATTACCATGTC 57.272 47.619 0.00 0.00 0.00 3.06
1541 1706 3.028130 TGGCTCGACTATTACCATGTCA 58.972 45.455 0.00 0.00 0.00 3.58
1542 1707 3.641436 TGGCTCGACTATTACCATGTCAT 59.359 43.478 0.00 0.00 0.00 3.06
1543 1708 4.100963 TGGCTCGACTATTACCATGTCATT 59.899 41.667 0.00 0.00 0.00 2.57
1544 1709 5.303333 TGGCTCGACTATTACCATGTCATTA 59.697 40.000 0.00 0.00 0.00 1.90
1545 1710 5.634020 GGCTCGACTATTACCATGTCATTAC 59.366 44.000 0.00 0.00 0.00 1.89
1575 1740 5.812642 AGTACTGCTGTCTTTCCAATTATCG 59.187 40.000 0.00 0.00 0.00 2.92
1576 1741 4.832248 ACTGCTGTCTTTCCAATTATCGA 58.168 39.130 0.00 0.00 0.00 3.59
1577 1742 5.431765 ACTGCTGTCTTTCCAATTATCGAT 58.568 37.500 2.16 2.16 0.00 3.59
1578 1743 5.525378 ACTGCTGTCTTTCCAATTATCGATC 59.475 40.000 0.00 0.00 0.00 3.69
1590 1755 6.014327 TCCAATTATCGATCAGATGGTGATGA 60.014 38.462 0.00 0.00 46.64 2.92
1593 1758 3.722728 TCGATCAGATGGTGATGAGTG 57.277 47.619 0.00 0.00 46.64 3.51
1606 1771 2.036346 TGATGAGTGTGTGAGGTGTGAG 59.964 50.000 0.00 0.00 0.00 3.51
1612 1777 1.899814 TGTGTGAGGTGTGAGGTATCC 59.100 52.381 0.00 0.00 0.00 2.59
1616 1781 5.138276 GTGTGAGGTGTGAGGTATCCTATA 58.862 45.833 0.00 0.00 31.76 1.31
1618 1783 6.946583 GTGTGAGGTGTGAGGTATCCTATATA 59.053 42.308 0.00 0.00 31.76 0.86
1619 1784 7.616150 GTGTGAGGTGTGAGGTATCCTATATAT 59.384 40.741 0.00 0.00 31.76 0.86
1620 1785 7.834681 TGTGAGGTGTGAGGTATCCTATATATC 59.165 40.741 0.00 0.00 31.76 1.63
1621 1786 8.056400 GTGAGGTGTGAGGTATCCTATATATCT 58.944 40.741 0.00 0.00 31.76 1.98
1622 1787 8.624670 TGAGGTGTGAGGTATCCTATATATCTT 58.375 37.037 0.00 0.00 31.76 2.40
1625 1790 9.127277 GGTGTGAGGTATCCTATATATCTTCTC 57.873 40.741 0.00 0.00 31.76 2.87
1659 1824 8.806429 TGCATTTGAGAACTTTCCTTATATGA 57.194 30.769 0.00 0.00 0.00 2.15
1693 1858 4.994852 CGGAGTGTTAGTGGAGAAAATCAA 59.005 41.667 0.00 0.00 0.00 2.57
1725 1890 9.463443 AATAATCAGTTTCAGTTGTTAACTTGC 57.537 29.630 7.22 0.00 40.46 4.01
1727 1892 6.119144 TCAGTTTCAGTTGTTAACTTGCTC 57.881 37.500 7.22 0.00 40.46 4.26
1756 1925 4.497006 GGAATGATTCAGTTTCTGCCATCG 60.497 45.833 7.56 0.00 0.00 3.84
1770 1939 3.045601 GCCATCGGCTTGTGATATACT 57.954 47.619 0.00 0.00 46.69 2.12
1771 1940 2.996621 GCCATCGGCTTGTGATATACTC 59.003 50.000 0.00 0.00 46.69 2.59
1772 1941 3.589988 CCATCGGCTTGTGATATACTCC 58.410 50.000 0.00 0.00 0.00 3.85
1773 1942 3.259374 CCATCGGCTTGTGATATACTCCT 59.741 47.826 0.00 0.00 0.00 3.69
1774 1943 4.262635 CCATCGGCTTGTGATATACTCCTT 60.263 45.833 0.00 0.00 0.00 3.36
1775 1944 4.322080 TCGGCTTGTGATATACTCCTTG 57.678 45.455 0.00 0.00 0.00 3.61
1776 1945 2.802816 CGGCTTGTGATATACTCCTTGC 59.197 50.000 0.00 0.00 0.00 4.01
1777 1946 2.802816 GGCTTGTGATATACTCCTTGCG 59.197 50.000 0.00 0.00 0.00 4.85
1778 1947 3.458189 GCTTGTGATATACTCCTTGCGT 58.542 45.455 0.00 0.00 0.00 5.24
1779 1948 3.246226 GCTTGTGATATACTCCTTGCGTG 59.754 47.826 0.00 0.00 0.00 5.34
1780 1949 4.682787 CTTGTGATATACTCCTTGCGTGA 58.317 43.478 0.00 0.00 0.00 4.35
1781 1950 4.729227 TGTGATATACTCCTTGCGTGAA 57.271 40.909 0.00 0.00 0.00 3.18
1782 1951 5.079689 TGTGATATACTCCTTGCGTGAAA 57.920 39.130 0.00 0.00 0.00 2.69
1783 1952 5.670485 TGTGATATACTCCTTGCGTGAAAT 58.330 37.500 0.00 0.00 0.00 2.17
1784 1953 5.523552 TGTGATATACTCCTTGCGTGAAATG 59.476 40.000 0.00 0.00 0.00 2.32
1785 1954 5.523916 GTGATATACTCCTTGCGTGAAATGT 59.476 40.000 0.00 0.00 0.00 2.71
1786 1955 6.700081 GTGATATACTCCTTGCGTGAAATGTA 59.300 38.462 0.00 0.00 0.00 2.29
1787 1956 7.223971 GTGATATACTCCTTGCGTGAAATGTAA 59.776 37.037 0.00 0.00 0.00 2.41
1788 1957 7.931407 TGATATACTCCTTGCGTGAAATGTAAT 59.069 33.333 0.00 0.00 0.00 1.89
1789 1958 4.685169 ACTCCTTGCGTGAAATGTAATG 57.315 40.909 0.00 0.00 0.00 1.90
1790 1959 4.323417 ACTCCTTGCGTGAAATGTAATGA 58.677 39.130 0.00 0.00 0.00 2.57
1791 1960 4.943705 ACTCCTTGCGTGAAATGTAATGAT 59.056 37.500 0.00 0.00 0.00 2.45
1792 1961 5.415701 ACTCCTTGCGTGAAATGTAATGATT 59.584 36.000 0.00 0.00 0.00 2.57
1813 1982 2.832129 TCACTGTATTCAGGTCCAGGTC 59.168 50.000 4.24 0.00 45.14 3.85
1814 1983 2.093447 CACTGTATTCAGGTCCAGGTCC 60.093 54.545 4.24 0.00 45.14 4.46
1815 1984 2.187958 CTGTATTCAGGTCCAGGTCCA 58.812 52.381 5.43 0.00 37.97 4.02
1816 1985 2.774234 CTGTATTCAGGTCCAGGTCCAT 59.226 50.000 5.43 0.00 37.97 3.41
1817 1986 3.967326 CTGTATTCAGGTCCAGGTCCATA 59.033 47.826 5.43 0.00 37.97 2.74
1818 1987 4.566837 TGTATTCAGGTCCAGGTCCATAT 58.433 43.478 5.43 0.00 0.00 1.78
1819 1988 5.722290 TGTATTCAGGTCCAGGTCCATATA 58.278 41.667 5.43 0.00 0.00 0.86
1820 1989 6.331032 TGTATTCAGGTCCAGGTCCATATAT 58.669 40.000 5.43 0.00 0.00 0.86
1821 1990 7.483881 TGTATTCAGGTCCAGGTCCATATATA 58.516 38.462 5.43 0.00 0.00 0.86
1822 1991 7.619698 TGTATTCAGGTCCAGGTCCATATATAG 59.380 40.741 5.43 0.00 0.00 1.31
1823 1992 5.878484 TCAGGTCCAGGTCCATATATAGA 57.122 43.478 5.43 0.00 0.00 1.98
1824 1993 6.423358 TCAGGTCCAGGTCCATATATAGAT 57.577 41.667 5.43 0.00 0.00 1.98
1825 1994 6.815880 TCAGGTCCAGGTCCATATATAGATT 58.184 40.000 5.43 0.00 0.00 2.40
1826 1995 7.950803 TCAGGTCCAGGTCCATATATAGATTA 58.049 38.462 5.43 0.00 0.00 1.75
1876 2051 1.002257 CCCGGCCATGCATGCTATA 60.002 57.895 21.69 0.00 0.00 1.31
1884 2059 3.127548 GCCATGCATGCTATATGTACACC 59.872 47.826 21.69 0.00 0.00 4.16
1886 2061 4.945543 CCATGCATGCTATATGTACACCAT 59.054 41.667 21.69 0.00 37.58 3.55
1894 2069 8.695456 CATGCTATATGTACACCATGGAGTATA 58.305 37.037 22.65 20.46 34.86 1.47
1901 2076 2.835764 ACACCATGGAGTATACAACCGT 59.164 45.455 21.47 6.81 0.00 4.83
1902 2077 3.118884 ACACCATGGAGTATACAACCGTC 60.119 47.826 21.47 0.00 0.00 4.79
1903 2078 2.100252 ACCATGGAGTATACAACCGTCG 59.900 50.000 21.47 5.24 0.00 5.12
1904 2079 2.100252 CCATGGAGTATACAACCGTCGT 59.900 50.000 5.56 0.00 0.00 4.34
1905 2080 3.316029 CCATGGAGTATACAACCGTCGTA 59.684 47.826 5.56 0.00 0.00 3.43
1906 2081 4.022589 CCATGGAGTATACAACCGTCGTAT 60.023 45.833 5.56 0.00 34.08 3.06
1907 2082 5.181811 CCATGGAGTATACAACCGTCGTATA 59.818 44.000 5.56 0.00 32.01 1.47
1908 2083 5.673337 TGGAGTATACAACCGTCGTATAC 57.327 43.478 10.61 10.61 46.36 1.47
1928 2103 4.337985 ACTCGTATCTGTCAAGTACACG 57.662 45.455 0.00 0.00 33.45 4.49
1947 2182 2.752903 ACGCTTCAACAAGGTTCTTTGT 59.247 40.909 0.00 0.00 42.82 2.83
1974 2240 5.751243 AAAAAGTACTACAAGTGCACCTG 57.249 39.130 14.63 14.27 32.98 4.00
1975 2241 2.457366 AGTACTACAAGTGCACCTGC 57.543 50.000 15.43 0.00 42.50 4.85
1976 2242 1.002087 AGTACTACAAGTGCACCTGCC 59.998 52.381 15.43 0.00 41.18 4.85
1977 2243 0.323629 TACTACAAGTGCACCTGCCC 59.676 55.000 15.43 0.00 41.18 5.36
1978 2244 1.675641 CTACAAGTGCACCTGCCCC 60.676 63.158 15.43 0.00 41.18 5.80
1979 2245 3.545124 TACAAGTGCACCTGCCCCG 62.545 63.158 15.43 0.00 41.18 5.73
2064 2330 2.358372 GGCACCCGCAATTCCCATT 61.358 57.895 0.00 0.00 41.24 3.16
2085 2353 7.442666 CCCATTTAGTCAGATTTAGTTAGCTCC 59.557 40.741 0.00 0.00 0.00 4.70
2140 2409 5.989477 TGAACCATTAGATCAGTAAGTGGG 58.011 41.667 0.00 0.00 0.00 4.61
2141 2410 4.423625 ACCATTAGATCAGTAAGTGGGC 57.576 45.455 0.00 0.00 0.00 5.36
2142 2411 4.040755 ACCATTAGATCAGTAAGTGGGCT 58.959 43.478 0.00 0.00 0.00 5.19
2143 2412 4.475016 ACCATTAGATCAGTAAGTGGGCTT 59.525 41.667 0.00 0.00 38.66 4.35
2144 2413 5.665812 ACCATTAGATCAGTAAGTGGGCTTA 59.334 40.000 0.00 0.00 36.22 3.09
2145 2414 6.157994 ACCATTAGATCAGTAAGTGGGCTTAA 59.842 38.462 0.00 0.00 38.74 1.85
2146 2415 7.054124 CCATTAGATCAGTAAGTGGGCTTAAA 58.946 38.462 0.00 0.00 38.74 1.52
2147 2416 7.012421 CCATTAGATCAGTAAGTGGGCTTAAAC 59.988 40.741 0.00 0.00 38.74 2.01
2148 2417 4.504858 AGATCAGTAAGTGGGCTTAAACG 58.495 43.478 0.00 0.00 38.74 3.60
2149 2418 3.048337 TCAGTAAGTGGGCTTAAACGG 57.952 47.619 0.00 0.00 38.74 4.44
2150 2419 2.081462 CAGTAAGTGGGCTTAAACGGG 58.919 52.381 0.00 0.00 38.74 5.28
2151 2420 1.980036 AGTAAGTGGGCTTAAACGGGA 59.020 47.619 0.00 0.00 38.74 5.14
2152 2421 2.574824 AGTAAGTGGGCTTAAACGGGAT 59.425 45.455 0.00 0.00 38.74 3.85
2153 2422 2.597578 AAGTGGGCTTAAACGGGATT 57.402 45.000 0.00 0.00 32.27 3.01
2154 2423 3.724732 AAGTGGGCTTAAACGGGATTA 57.275 42.857 0.00 0.00 32.27 1.75
2155 2424 3.724732 AGTGGGCTTAAACGGGATTAA 57.275 42.857 0.00 0.00 0.00 1.40
2156 2425 4.036941 AGTGGGCTTAAACGGGATTAAA 57.963 40.909 0.00 0.00 0.00 1.52
2157 2426 3.760151 AGTGGGCTTAAACGGGATTAAAC 59.240 43.478 0.00 0.00 0.00 2.01
2158 2427 3.506844 GTGGGCTTAAACGGGATTAAACA 59.493 43.478 0.00 0.00 0.00 2.83
2159 2428 3.759618 TGGGCTTAAACGGGATTAAACAG 59.240 43.478 0.00 0.00 0.00 3.16
2160 2429 4.011698 GGGCTTAAACGGGATTAAACAGA 58.988 43.478 0.00 0.00 0.00 3.41
2161 2430 4.460034 GGGCTTAAACGGGATTAAACAGAA 59.540 41.667 0.00 0.00 0.00 3.02
2162 2431 5.396484 GGCTTAAACGGGATTAAACAGAAC 58.604 41.667 0.00 0.00 0.00 3.01
2163 2432 5.396484 GCTTAAACGGGATTAAACAGAACC 58.604 41.667 0.00 0.00 0.00 3.62
2164 2433 5.620654 GCTTAAACGGGATTAAACAGAACCC 60.621 44.000 0.00 0.00 37.42 4.11
2167 2436 2.502142 GGGATTAAACAGAACCCGGT 57.498 50.000 0.00 0.00 0.00 5.28
2168 2437 2.799017 GGGATTAAACAGAACCCGGTT 58.201 47.619 1.22 1.22 32.11 4.44
2169 2438 3.159472 GGGATTAAACAGAACCCGGTTT 58.841 45.455 3.77 0.00 42.01 3.27
2170 2439 4.334552 GGGATTAAACAGAACCCGGTTTA 58.665 43.478 3.77 0.00 40.31 2.01
2171 2440 4.156556 GGGATTAAACAGAACCCGGTTTAC 59.843 45.833 3.77 0.00 40.71 2.01
2172 2441 4.761227 GGATTAAACAGAACCCGGTTTACA 59.239 41.667 3.77 0.00 40.71 2.41
2173 2442 5.416639 GGATTAAACAGAACCCGGTTTACAT 59.583 40.000 3.77 0.00 40.71 2.29
2174 2443 5.945466 TTAAACAGAACCCGGTTTACATC 57.055 39.130 3.77 0.00 40.71 3.06
2175 2444 2.484742 ACAGAACCCGGTTTACATCC 57.515 50.000 3.77 0.00 0.00 3.51
2176 2445 1.003928 ACAGAACCCGGTTTACATCCC 59.996 52.381 3.77 0.00 0.00 3.85
2177 2446 1.280998 CAGAACCCGGTTTACATCCCT 59.719 52.381 3.77 0.00 0.00 4.20
2178 2447 1.280998 AGAACCCGGTTTACATCCCTG 59.719 52.381 3.77 0.00 0.00 4.45
2179 2448 1.003928 GAACCCGGTTTACATCCCTGT 59.996 52.381 3.77 0.00 39.49 4.00
2180 2449 0.326927 ACCCGGTTTACATCCCTGTG 59.673 55.000 0.00 0.00 36.79 3.66
2181 2450 0.616371 CCCGGTTTACATCCCTGTGA 59.384 55.000 0.00 0.00 36.79 3.58
2182 2451 1.406887 CCCGGTTTACATCCCTGTGAG 60.407 57.143 0.00 0.00 36.79 3.51
2183 2452 1.278127 CCGGTTTACATCCCTGTGAGT 59.722 52.381 0.00 0.00 36.79 3.41
2184 2453 2.346803 CGGTTTACATCCCTGTGAGTG 58.653 52.381 0.00 0.00 36.79 3.51
2185 2454 2.028476 CGGTTTACATCCCTGTGAGTGA 60.028 50.000 0.00 0.00 36.79 3.41
2186 2455 3.369471 CGGTTTACATCCCTGTGAGTGAT 60.369 47.826 0.00 0.00 36.79 3.06
2187 2456 3.941483 GGTTTACATCCCTGTGAGTGATG 59.059 47.826 0.00 0.00 41.26 3.07
2188 2457 2.988010 TACATCCCTGTGAGTGATGC 57.012 50.000 0.00 0.00 39.55 3.91
2189 2458 0.986527 ACATCCCTGTGAGTGATGCA 59.013 50.000 0.00 0.00 39.55 3.96
2190 2459 1.065636 ACATCCCTGTGAGTGATGCAG 60.066 52.381 0.00 0.00 39.55 4.41
2191 2460 0.107312 ATCCCTGTGAGTGATGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
2192 2461 1.002990 CCCTGTGAGTGATGCAGCA 60.003 57.895 0.00 0.00 0.00 4.41
2193 2462 1.303799 CCCTGTGAGTGATGCAGCAC 61.304 60.000 27.12 27.12 39.05 4.40
2194 2463 0.604511 CCTGTGAGTGATGCAGCACA 60.605 55.000 34.19 19.73 41.19 4.57
2195 2464 0.516001 CTGTGAGTGATGCAGCACAC 59.484 55.000 34.19 28.61 41.19 3.82
2198 2467 4.709840 AGTGATGCAGCACACTCC 57.290 55.556 34.19 9.68 42.61 3.85
2199 2468 1.756665 AGTGATGCAGCACACTCCA 59.243 52.632 34.19 0.00 42.61 3.86
2200 2469 0.321387 AGTGATGCAGCACACTCCAG 60.321 55.000 34.19 0.00 42.61 3.86
2201 2470 1.673337 TGATGCAGCACACTCCAGC 60.673 57.895 0.00 0.00 0.00 4.85
2213 2482 4.539083 TCCAGCGTTGCACCGTGT 62.539 61.111 5.30 0.00 0.00 4.49
2286 2555 2.262915 CGAGCGAGCCTTCTTGGT 59.737 61.111 0.00 0.00 37.15 3.67
2287 2556 2.097038 CGAGCGAGCCTTCTTGGTG 61.097 63.158 0.00 0.00 34.72 4.17
2288 2557 1.293498 GAGCGAGCCTTCTTGGTGA 59.707 57.895 0.00 0.00 34.72 4.02
2289 2558 0.320771 GAGCGAGCCTTCTTGGTGAA 60.321 55.000 0.00 0.00 34.72 3.18
2390 2659 7.957002 ACAACATTATTTACACCCATGAAACA 58.043 30.769 0.00 0.00 0.00 2.83
2410 2681 8.134895 TGAAACAGTAACAATGGAATCAAACTC 58.865 33.333 0.00 0.00 0.00 3.01
2413 2684 6.772716 ACAGTAACAATGGAATCAAACTCACT 59.227 34.615 0.00 0.00 0.00 3.41
2427 2698 1.004044 ACTCACTGGAGCCCTCAAATG 59.996 52.381 0.00 0.00 45.42 2.32
2430 2701 0.610232 ACTGGAGCCCTCAAATGCAC 60.610 55.000 0.00 0.00 0.00 4.57
2475 2747 4.157840 CCAGAGTAAAATTGCCACCTAACC 59.842 45.833 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.469465 TACAGCCTCCACAAGCAGCC 62.469 60.000 0.00 0.00 0.00 4.85
49 50 3.731264 GCAAGCACGGACTAGTACTACAG 60.731 52.174 2.99 0.00 0.00 2.74
50 51 2.163010 GCAAGCACGGACTAGTACTACA 59.837 50.000 2.99 0.00 0.00 2.74
56 57 2.143925 GAAAAGCAAGCACGGACTAGT 58.856 47.619 0.00 0.00 0.00 2.57
58 59 2.143122 CTGAAAAGCAAGCACGGACTA 58.857 47.619 0.00 0.00 0.00 2.59
59 60 0.947244 CTGAAAAGCAAGCACGGACT 59.053 50.000 0.00 0.00 0.00 3.85
60 61 0.663153 ACTGAAAAGCAAGCACGGAC 59.337 50.000 0.00 0.00 0.00 4.79
61 62 0.662619 CACTGAAAAGCAAGCACGGA 59.337 50.000 0.00 0.00 0.00 4.69
62 63 0.381801 ACACTGAAAAGCAAGCACGG 59.618 50.000 0.00 0.00 0.00 4.94
63 64 2.111756 GAACACTGAAAAGCAAGCACG 58.888 47.619 0.00 0.00 0.00 5.34
64 65 2.463876 GGAACACTGAAAAGCAAGCAC 58.536 47.619 0.00 0.00 0.00 4.40
65 66 1.408702 GGGAACACTGAAAAGCAAGCA 59.591 47.619 0.00 0.00 0.00 3.91
66 67 1.269778 GGGGAACACTGAAAAGCAAGC 60.270 52.381 0.00 0.00 0.00 4.01
67 68 1.341209 GGGGGAACACTGAAAAGCAAG 59.659 52.381 0.00 0.00 0.00 4.01
68 69 1.408969 GGGGGAACACTGAAAAGCAA 58.591 50.000 0.00 0.00 0.00 3.91
69 70 3.125520 GGGGGAACACTGAAAAGCA 57.874 52.632 0.00 0.00 0.00 3.91
87 88 0.813184 AATGGCCGAACTGATGCAAG 59.187 50.000 0.00 0.00 0.00 4.01
91 92 4.637483 AATTACAATGGCCGAACTGATG 57.363 40.909 0.00 0.00 0.00 3.07
95 96 2.495669 CCCAAATTACAATGGCCGAACT 59.504 45.455 0.00 0.00 35.28 3.01
99 100 2.287547 CGATCCCAAATTACAATGGCCG 60.288 50.000 0.00 0.00 35.28 6.13
104 105 5.047377 ACAGCAAACGATCCCAAATTACAAT 60.047 36.000 0.00 0.00 0.00 2.71
117 118 3.326747 GACAGGAGTTACAGCAAACGAT 58.673 45.455 0.00 0.00 34.46 3.73
119 120 1.798813 GGACAGGAGTTACAGCAAACG 59.201 52.381 0.00 0.00 34.46 3.60
125 126 1.616865 TCAACCGGACAGGAGTTACAG 59.383 52.381 9.46 0.00 45.00 2.74
134 135 4.503741 AACAAAATCATCAACCGGACAG 57.496 40.909 9.46 0.00 0.00 3.51
137 138 7.220741 TGAATTAACAAAATCATCAACCGGA 57.779 32.000 9.46 0.00 0.00 5.14
140 141 8.229811 GGCTTTGAATTAACAAAATCATCAACC 58.770 33.333 0.00 0.00 38.90 3.77
149 150 4.623002 GGACCGGCTTTGAATTAACAAAA 58.377 39.130 0.00 0.00 38.90 2.44
260 261 9.310449 CTGGATACCCTAATTACACTACTACAT 57.690 37.037 0.00 0.00 0.00 2.29
261 262 7.232127 GCTGGATACCCTAATTACACTACTACA 59.768 40.741 0.00 0.00 0.00 2.74
262 263 7.309683 GGCTGGATACCCTAATTACACTACTAC 60.310 44.444 0.00 0.00 0.00 2.73
263 264 6.723052 GGCTGGATACCCTAATTACACTACTA 59.277 42.308 0.00 0.00 0.00 1.82
264 265 5.543020 GGCTGGATACCCTAATTACACTACT 59.457 44.000 0.00 0.00 0.00 2.57
265 266 5.279859 GGGCTGGATACCCTAATTACACTAC 60.280 48.000 0.00 0.00 44.68 2.73
266 267 4.842380 GGGCTGGATACCCTAATTACACTA 59.158 45.833 0.00 0.00 44.68 2.74
267 268 3.651423 GGGCTGGATACCCTAATTACACT 59.349 47.826 0.00 0.00 44.68 3.55
268 269 4.017177 GGGCTGGATACCCTAATTACAC 57.983 50.000 0.00 0.00 44.68 2.90
278 279 4.564110 GTGCCGGGGCTGGATACC 62.564 72.222 11.55 0.00 42.51 2.73
279 280 3.462199 GAGTGCCGGGGCTGGATAC 62.462 68.421 11.55 0.00 42.51 2.24
280 281 3.161450 GAGTGCCGGGGCTGGATA 61.161 66.667 11.55 0.00 42.51 2.59
283 284 3.944250 AATTGAGTGCCGGGGCTGG 62.944 63.158 11.55 0.00 42.51 4.85
284 285 2.361610 AATTGAGTGCCGGGGCTG 60.362 61.111 11.55 0.00 42.51 4.85
285 286 2.361610 CAATTGAGTGCCGGGGCT 60.362 61.111 11.55 0.00 42.51 5.19
286 287 3.451894 CCAATTGAGTGCCGGGGC 61.452 66.667 7.12 1.86 42.35 5.80
287 288 3.451894 GCCAATTGAGTGCCGGGG 61.452 66.667 7.12 0.00 0.00 5.73
288 289 1.978617 AAGCCAATTGAGTGCCGGG 60.979 57.895 7.12 0.00 0.00 5.73
289 290 1.213537 CAAGCCAATTGAGTGCCGG 59.786 57.895 7.12 0.00 41.83 6.13
290 291 1.213537 CCAAGCCAATTGAGTGCCG 59.786 57.895 7.12 0.00 41.83 5.69
291 292 1.544724 TACCAAGCCAATTGAGTGCC 58.455 50.000 7.12 0.00 41.83 5.01
292 293 3.317150 GTTTACCAAGCCAATTGAGTGC 58.683 45.455 7.12 1.65 41.83 4.40
293 294 3.913089 GGTTTACCAAGCCAATTGAGTG 58.087 45.455 7.12 1.60 41.83 3.51
307 308 4.216902 ACGTATTGCTTCTTTGGGTTTACC 59.783 41.667 0.00 0.00 40.81 2.85
321 322 0.321671 ACACTGCTCCACGTATTGCT 59.678 50.000 0.00 0.00 0.00 3.91
369 370 5.978814 TCCTTTTCGTTTCAAAAATGGGAA 58.021 33.333 0.00 0.00 33.01 3.97
412 413 1.205655 TCTCGCAGTTTGAGAGATGGG 59.794 52.381 8.18 0.00 45.93 4.00
413 414 2.662006 TCTCGCAGTTTGAGAGATGG 57.338 50.000 8.18 0.00 45.93 3.51
428 429 2.203422 AGCCTCGATCCCCTCTCG 60.203 66.667 0.00 0.00 37.47 4.04
434 435 2.356793 CGATGCAGCCTCGATCCC 60.357 66.667 14.34 0.00 38.38 3.85
437 438 2.028778 GAGCGATGCAGCCTCGAT 59.971 61.111 22.58 17.15 38.38 3.59
438 439 2.505635 TTTGAGCGATGCAGCCTCGA 62.506 55.000 22.58 8.98 38.38 4.04
439 440 2.102438 TTTGAGCGATGCAGCCTCG 61.102 57.895 15.10 15.10 39.11 4.63
440 441 1.023513 AGTTTGAGCGATGCAGCCTC 61.024 55.000 11.94 11.94 38.01 4.70
441 442 1.002868 AGTTTGAGCGATGCAGCCT 60.003 52.632 0.00 0.00 38.01 4.58
442 443 1.136147 CAGTTTGAGCGATGCAGCC 59.864 57.895 0.00 0.00 38.01 4.85
443 444 1.136147 CCAGTTTGAGCGATGCAGC 59.864 57.895 0.00 0.00 37.41 5.25
444 445 0.674581 TCCCAGTTTGAGCGATGCAG 60.675 55.000 0.00 0.00 0.00 4.41
445 446 0.674581 CTCCCAGTTTGAGCGATGCA 60.675 55.000 0.00 0.00 0.00 3.96
446 447 0.674895 ACTCCCAGTTTGAGCGATGC 60.675 55.000 0.00 0.00 32.98 3.91
447 448 2.093973 ACTACTCCCAGTTTGAGCGATG 60.094 50.000 0.00 0.00 32.98 3.84
448 449 2.180276 ACTACTCCCAGTTTGAGCGAT 58.820 47.619 0.00 0.00 32.98 4.58
449 450 1.629043 ACTACTCCCAGTTTGAGCGA 58.371 50.000 0.00 0.00 32.98 4.93
450 451 2.492484 ACTACTACTCCCAGTTTGAGCG 59.508 50.000 0.00 0.00 32.98 5.03
500 501 5.013547 TCCCGCAGAATTCAATTCCTTTTA 58.986 37.500 8.44 0.00 40.13 1.52
502 503 3.430453 TCCCGCAGAATTCAATTCCTTT 58.570 40.909 8.44 0.00 40.13 3.11
527 556 2.758327 ATCCGGCGTCTGCACCTA 60.758 61.111 6.01 0.00 45.35 3.08
528 557 4.148825 GATCCGGCGTCTGCACCT 62.149 66.667 6.01 0.00 45.35 4.00
530 559 4.796231 ACGATCCGGCGTCTGCAC 62.796 66.667 6.01 0.00 41.22 4.57
531 560 4.794439 CACGATCCGGCGTCTGCA 62.794 66.667 6.01 0.00 43.59 4.41
533 562 3.758088 CTCCACGATCCGGCGTCTG 62.758 68.421 6.01 0.00 43.59 3.51
534 563 3.518998 CTCCACGATCCGGCGTCT 61.519 66.667 6.01 0.00 43.59 4.18
539 568 2.608970 ATTTGGGCTCCACGATCCGG 62.609 60.000 0.00 0.00 30.78 5.14
540 569 1.153168 ATTTGGGCTCCACGATCCG 60.153 57.895 0.00 0.00 30.78 4.18
541 570 0.181350 AGATTTGGGCTCCACGATCC 59.819 55.000 0.00 0.00 30.78 3.36
542 571 1.943340 GAAGATTTGGGCTCCACGATC 59.057 52.381 0.00 2.14 30.78 3.69
543 572 1.561542 AGAAGATTTGGGCTCCACGAT 59.438 47.619 0.00 0.00 30.78 3.73
544 573 0.984230 AGAAGATTTGGGCTCCACGA 59.016 50.000 0.00 0.00 30.78 4.35
545 574 1.089920 CAGAAGATTTGGGCTCCACG 58.910 55.000 0.00 0.00 30.78 4.94
546 575 0.813821 GCAGAAGATTTGGGCTCCAC 59.186 55.000 0.00 0.00 30.78 4.02
547 576 0.405198 TGCAGAAGATTTGGGCTCCA 59.595 50.000 0.00 0.00 0.00 3.86
548 577 1.101331 CTGCAGAAGATTTGGGCTCC 58.899 55.000 8.42 0.00 0.00 4.70
549 578 0.455005 GCTGCAGAAGATTTGGGCTC 59.545 55.000 20.43 0.00 0.00 4.70
550 579 0.251474 TGCTGCAGAAGATTTGGGCT 60.251 50.000 20.43 0.00 0.00 5.19
551 580 0.172803 CTGCTGCAGAAGATTTGGGC 59.827 55.000 24.88 0.00 32.44 5.36
552 581 0.172803 GCTGCTGCAGAAGATTTGGG 59.827 55.000 32.30 3.79 39.41 4.12
562 591 1.281960 GATTATGCCGCTGCTGCAG 59.718 57.895 24.80 24.80 42.92 4.41
577 606 3.544684 TGCCATAGCTTGAATCGTGATT 58.455 40.909 0.00 0.00 40.80 2.57
608 685 5.995565 AGTGCTTATGGAGTGTTACTACA 57.004 39.130 0.00 0.00 44.42 2.74
609 686 6.164176 ACAAGTGCTTATGGAGTGTTACTAC 58.836 40.000 0.00 0.00 0.00 2.73
610 687 6.354794 ACAAGTGCTTATGGAGTGTTACTA 57.645 37.500 0.00 0.00 0.00 1.82
611 688 5.228945 ACAAGTGCTTATGGAGTGTTACT 57.771 39.130 0.00 0.00 0.00 2.24
612 689 7.611213 AATACAAGTGCTTATGGAGTGTTAC 57.389 36.000 0.00 0.00 0.00 2.50
637 714 8.034804 GGAGTGATGTTGGCTTTGTTTAAATAT 58.965 33.333 0.00 0.00 0.00 1.28
641 739 4.038642 GGGAGTGATGTTGGCTTTGTTTAA 59.961 41.667 0.00 0.00 0.00 1.52
649 747 1.001641 GCAGGGAGTGATGTTGGCT 60.002 57.895 0.00 0.00 0.00 4.75
747 861 4.715297 GGGAGGCGATTATATAGGGAAGAA 59.285 45.833 0.00 0.00 0.00 2.52
751 865 2.316677 TGGGGAGGCGATTATATAGGGA 59.683 50.000 0.00 0.00 0.00 4.20
797 915 2.751913 CGTGAGGAGGAGGACGACG 61.752 68.421 0.00 0.00 33.64 5.12
801 919 4.500116 GCGCGTGAGGAGGAGGAC 62.500 72.222 8.43 0.00 0.00 3.85
881 1046 4.646572 AGGAAAGAGGAGCACTTACAAAG 58.353 43.478 0.00 0.00 0.00 2.77
932 1097 4.660938 AGGCACAAGAACCCGGCC 62.661 66.667 0.00 0.00 44.92 6.13
933 1098 3.056328 GAGGCACAAGAACCCGGC 61.056 66.667 0.00 0.00 0.00 6.13
934 1099 0.323629 TAAGAGGCACAAGAACCCGG 59.676 55.000 0.00 0.00 0.00 5.73
970 1135 2.432510 GGTGGGTCAACAAATTCCACAA 59.567 45.455 12.06 0.00 46.93 3.33
973 1138 1.323412 CGGTGGGTCAACAAATTCCA 58.677 50.000 0.00 0.00 0.00 3.53
976 1141 0.673437 CTGCGGTGGGTCAACAAATT 59.327 50.000 0.00 0.00 0.00 1.82
1015 1180 0.673022 GCACCCTTGAGAGCACTCTG 60.673 60.000 12.54 3.14 42.99 3.35
1017 1182 1.376553 GGCACCCTTGAGAGCACTC 60.377 63.158 3.95 3.95 42.88 3.51
1019 1184 0.957888 GAAGGCACCCTTGAGAGCAC 60.958 60.000 0.42 0.00 44.82 4.40
1020 1185 1.376466 GAAGGCACCCTTGAGAGCA 59.624 57.895 0.42 0.00 44.82 4.26
1021 1186 1.743252 CGAAGGCACCCTTGAGAGC 60.743 63.158 0.42 0.00 44.82 4.09
1022 1187 1.743252 GCGAAGGCACCCTTGAGAG 60.743 63.158 0.42 0.00 44.82 3.20
1023 1188 2.347490 GCGAAGGCACCCTTGAGA 59.653 61.111 0.42 0.00 44.82 3.27
1024 1189 2.032528 TGCGAAGGCACCCTTGAG 59.967 61.111 0.42 0.00 44.82 3.02
1033 1198 1.512734 CGAAATGCTGTGCGAAGGC 60.513 57.895 0.00 0.00 40.52 4.35
1044 1209 2.750888 GGCCACGACCTCGAAATGC 61.751 63.158 0.00 0.00 43.02 3.56
1134 1299 2.590575 ACGACACAAACGCTGGGG 60.591 61.111 0.00 0.00 29.87 4.96
1270 1435 3.823330 GATCCACGGAGTCGGCGT 61.823 66.667 6.85 0.00 41.61 5.68
1280 1445 0.390340 CCCATATGCTCGGATCCACG 60.390 60.000 13.41 2.47 0.00 4.94
1333 1498 2.437343 CGAGCACCGCGAGAAGAAC 61.437 63.158 8.23 0.00 0.00 3.01
1360 1525 1.517242 GAAGACTTCACCTGCACCAG 58.483 55.000 10.42 0.00 0.00 4.00
1448 1613 0.666913 ATAGTAGGTAGCCACGCACG 59.333 55.000 0.00 0.00 0.00 5.34
1452 1617 2.226912 GAGCTCATAGTAGGTAGCCACG 59.773 54.545 9.40 0.00 35.54 4.94
1479 1644 0.682209 AAGCAGCCCACATGATGACC 60.682 55.000 0.00 0.00 0.00 4.02
1541 1706 7.982354 GGAAAGACAGCAGTACTAATGAGTAAT 59.018 37.037 12.22 0.00 39.91 1.89
1542 1707 7.039293 TGGAAAGACAGCAGTACTAATGAGTAA 60.039 37.037 12.22 0.00 39.91 2.24
1543 1708 6.436218 TGGAAAGACAGCAGTACTAATGAGTA 59.564 38.462 12.22 0.00 37.10 2.59
1544 1709 5.246203 TGGAAAGACAGCAGTACTAATGAGT 59.754 40.000 12.22 0.00 39.92 3.41
1545 1710 5.724328 TGGAAAGACAGCAGTACTAATGAG 58.276 41.667 12.22 0.00 0.00 2.90
1575 1740 3.869832 CACACACTCATCACCATCTGATC 59.130 47.826 0.00 0.00 37.53 2.92
1576 1741 3.516700 TCACACACTCATCACCATCTGAT 59.483 43.478 0.00 0.00 40.59 2.90
1577 1742 2.899256 TCACACACTCATCACCATCTGA 59.101 45.455 0.00 0.00 0.00 3.27
1578 1743 3.259902 CTCACACACTCATCACCATCTG 58.740 50.000 0.00 0.00 0.00 2.90
1590 1755 2.082140 TACCTCACACCTCACACACT 57.918 50.000 0.00 0.00 0.00 3.55
1593 1758 2.180276 AGGATACCTCACACCTCACAC 58.820 52.381 0.00 0.00 37.17 3.82
1606 1771 9.875708 ACATCCAGAGAAGATATATAGGATACC 57.124 37.037 0.00 0.00 33.57 2.73
1616 1781 8.380867 TCAAATGCATACATCCAGAGAAGATAT 58.619 33.333 0.00 0.00 34.62 1.63
1618 1783 6.598503 TCAAATGCATACATCCAGAGAAGAT 58.401 36.000 0.00 0.00 34.62 2.40
1619 1784 5.993055 TCAAATGCATACATCCAGAGAAGA 58.007 37.500 0.00 0.00 34.62 2.87
1620 1785 6.053650 TCTCAAATGCATACATCCAGAGAAG 58.946 40.000 0.00 0.00 35.86 2.85
1621 1786 5.993055 TCTCAAATGCATACATCCAGAGAA 58.007 37.500 0.00 0.00 35.86 2.87
1622 1787 5.619132 TCTCAAATGCATACATCCAGAGA 57.381 39.130 0.00 2.86 36.15 3.10
1625 1790 6.446781 AAGTTCTCAAATGCATACATCCAG 57.553 37.500 0.00 0.00 34.62 3.86
1659 1824 6.779049 TCCACTAACACTCCGGTAATACATAT 59.221 38.462 0.00 0.00 0.00 1.78
1663 1828 4.641989 TCTCCACTAACACTCCGGTAATAC 59.358 45.833 0.00 0.00 0.00 1.89
1664 1829 4.858850 TCTCCACTAACACTCCGGTAATA 58.141 43.478 0.00 0.00 0.00 0.98
1665 1830 3.705051 TCTCCACTAACACTCCGGTAAT 58.295 45.455 0.00 0.00 0.00 1.89
1666 1831 3.159213 TCTCCACTAACACTCCGGTAA 57.841 47.619 0.00 0.00 0.00 2.85
1667 1832 2.885135 TCTCCACTAACACTCCGGTA 57.115 50.000 0.00 0.00 0.00 4.02
1668 1833 2.005370 TTCTCCACTAACACTCCGGT 57.995 50.000 0.00 0.00 0.00 5.28
1725 1890 2.636830 ACTGAATCATTCCAAGCGGAG 58.363 47.619 0.00 0.00 44.10 4.63
1727 1892 3.441572 AGAAACTGAATCATTCCAAGCGG 59.558 43.478 0.00 0.00 0.00 5.52
1756 1925 2.802816 CGCAAGGAGTATATCACAAGCC 59.197 50.000 0.00 0.00 0.00 4.35
1758 1927 4.682787 TCACGCAAGGAGTATATCACAAG 58.317 43.478 0.00 0.00 46.39 3.16
1759 1928 4.729227 TCACGCAAGGAGTATATCACAA 57.271 40.909 0.00 0.00 46.39 3.33
1761 1930 5.523916 ACATTTCACGCAAGGAGTATATCAC 59.476 40.000 0.00 0.00 46.39 3.06
1762 1931 5.670485 ACATTTCACGCAAGGAGTATATCA 58.330 37.500 0.00 0.00 46.39 2.15
1763 1932 7.709269 TTACATTTCACGCAAGGAGTATATC 57.291 36.000 0.00 0.00 46.39 1.63
1764 1933 7.931407 TCATTACATTTCACGCAAGGAGTATAT 59.069 33.333 0.00 0.00 46.39 0.86
1765 1934 7.269316 TCATTACATTTCACGCAAGGAGTATA 58.731 34.615 0.00 0.00 46.39 1.47
1766 1935 6.112734 TCATTACATTTCACGCAAGGAGTAT 58.887 36.000 0.00 0.00 46.39 2.12
1767 1936 5.483811 TCATTACATTTCACGCAAGGAGTA 58.516 37.500 0.00 0.00 46.39 2.59
1768 1937 4.323417 TCATTACATTTCACGCAAGGAGT 58.677 39.130 0.00 0.00 46.39 3.85
1769 1938 4.944962 TCATTACATTTCACGCAAGGAG 57.055 40.909 0.00 0.00 46.39 3.69
1770 1939 5.414144 TGAATCATTACATTTCACGCAAGGA 59.586 36.000 0.00 0.00 46.39 3.36
1771 1940 5.512788 GTGAATCATTACATTTCACGCAAGG 59.487 40.000 0.00 0.00 39.67 3.61
1772 1941 6.544620 GTGAATCATTACATTTCACGCAAG 57.455 37.500 0.00 0.00 39.67 4.01
1779 1948 9.941664 CCTGAATACAGTGAATCATTACATTTC 57.058 33.333 0.00 0.00 42.05 2.17
1780 1949 9.466497 ACCTGAATACAGTGAATCATTACATTT 57.534 29.630 0.00 0.00 42.05 2.32
1781 1950 9.113838 GACCTGAATACAGTGAATCATTACATT 57.886 33.333 0.00 0.00 42.05 2.71
1782 1951 7.716998 GGACCTGAATACAGTGAATCATTACAT 59.283 37.037 0.00 0.00 42.05 2.29
1783 1952 7.047891 GGACCTGAATACAGTGAATCATTACA 58.952 38.462 0.00 0.00 42.05 2.41
1784 1953 7.047891 TGGACCTGAATACAGTGAATCATTAC 58.952 38.462 0.00 0.00 42.05 1.89
1785 1954 7.194112 TGGACCTGAATACAGTGAATCATTA 57.806 36.000 0.00 0.00 42.05 1.90
1786 1955 6.065976 TGGACCTGAATACAGTGAATCATT 57.934 37.500 0.00 0.00 42.05 2.57
1787 1956 5.397221 CCTGGACCTGAATACAGTGAATCAT 60.397 44.000 0.00 0.00 42.05 2.45
1788 1957 4.080919 CCTGGACCTGAATACAGTGAATCA 60.081 45.833 0.00 0.00 42.05 2.57
1789 1958 4.080863 ACCTGGACCTGAATACAGTGAATC 60.081 45.833 0.00 0.00 42.05 2.52
1790 1959 3.846588 ACCTGGACCTGAATACAGTGAAT 59.153 43.478 0.00 0.00 42.05 2.57
1791 1960 3.248024 ACCTGGACCTGAATACAGTGAA 58.752 45.455 0.00 0.00 42.05 3.18
1792 1961 2.832129 GACCTGGACCTGAATACAGTGA 59.168 50.000 0.00 0.00 42.05 3.41
1813 1982 9.838339 GTGACCCAAGGAATAATCTATATATGG 57.162 37.037 0.00 0.00 0.00 2.74
1817 1986 7.831193 GCATGTGACCCAAGGAATAATCTATAT 59.169 37.037 0.00 0.00 0.00 0.86
1818 1987 7.168219 GCATGTGACCCAAGGAATAATCTATA 58.832 38.462 0.00 0.00 0.00 1.31
1819 1988 6.006449 GCATGTGACCCAAGGAATAATCTAT 58.994 40.000 0.00 0.00 0.00 1.98
1820 1989 5.376625 GCATGTGACCCAAGGAATAATCTA 58.623 41.667 0.00 0.00 0.00 1.98
1821 1990 4.210331 GCATGTGACCCAAGGAATAATCT 58.790 43.478 0.00 0.00 0.00 2.40
1822 1991 3.319122 GGCATGTGACCCAAGGAATAATC 59.681 47.826 0.00 0.00 0.00 1.75
1823 1992 3.299503 GGCATGTGACCCAAGGAATAAT 58.700 45.455 0.00 0.00 0.00 1.28
1824 1993 2.042297 TGGCATGTGACCCAAGGAATAA 59.958 45.455 0.00 0.00 0.00 1.40
1825 1994 1.638070 TGGCATGTGACCCAAGGAATA 59.362 47.619 0.00 0.00 0.00 1.75
1826 1995 0.409092 TGGCATGTGACCCAAGGAAT 59.591 50.000 0.00 0.00 0.00 3.01
1876 2051 5.452776 CGGTTGTATACTCCATGGTGTACAT 60.453 44.000 25.04 15.80 41.14 2.29
1884 2059 3.431922 ACGACGGTTGTATACTCCATG 57.568 47.619 4.17 0.00 0.00 3.66
1886 2061 5.673337 GTATACGACGGTTGTATACTCCA 57.327 43.478 32.62 14.32 45.68 3.86
1894 2069 4.025396 CAGATACGAGTATACGACGGTTGT 60.025 45.833 22.02 6.24 37.03 3.32
1901 2076 6.980397 TGTACTTGACAGATACGAGTATACGA 59.020 38.462 0.00 0.00 36.85 3.43
1902 2077 7.062240 GTGTACTTGACAGATACGAGTATACG 58.938 42.308 0.00 0.00 39.29 3.06
1903 2078 7.062240 CGTGTACTTGACAGATACGAGTATAC 58.938 42.308 0.00 0.00 39.29 1.47
1904 2079 6.292542 GCGTGTACTTGACAGATACGAGTATA 60.293 42.308 0.00 0.00 39.29 1.47
1905 2080 5.503683 GCGTGTACTTGACAGATACGAGTAT 60.504 44.000 0.00 0.00 39.29 2.12
1906 2081 4.201753 GCGTGTACTTGACAGATACGAGTA 60.202 45.833 0.00 0.00 39.29 2.59
1907 2082 3.425892 GCGTGTACTTGACAGATACGAGT 60.426 47.826 0.00 0.00 39.29 4.18
1908 2083 3.099362 GCGTGTACTTGACAGATACGAG 58.901 50.000 0.00 0.00 39.29 4.18
1961 2227 2.434331 GGGGCAGGTGCACTTGTA 59.566 61.111 27.30 0.00 45.56 2.41
1962 2228 4.954970 CGGGGCAGGTGCACTTGT 62.955 66.667 27.30 5.98 45.56 3.16
1979 2245 4.741239 TGGGAGGGGTGGCTCTCC 62.741 72.222 0.00 0.00 46.57 3.71
1980 2246 3.403558 GTGGGAGGGGTGGCTCTC 61.404 72.222 0.00 0.00 0.00 3.20
1981 2247 3.933542 GAGTGGGAGGGGTGGCTCT 62.934 68.421 0.00 0.00 0.00 4.09
1982 2248 3.403558 GAGTGGGAGGGGTGGCTC 61.404 72.222 0.00 0.00 0.00 4.70
2064 2330 9.422681 ACTATGGAGCTAACTAAATCTGACTAA 57.577 33.333 0.00 0.00 0.00 2.24
2116 2385 6.051717 CCCACTTACTGATCTAATGGTTCAG 58.948 44.000 3.57 3.57 43.62 3.02
2138 2407 4.011698 TCTGTTTAATCCCGTTTAAGCCC 58.988 43.478 0.00 0.00 0.00 5.19
2139 2408 5.396484 GTTCTGTTTAATCCCGTTTAAGCC 58.604 41.667 0.00 0.00 0.00 4.35
2140 2409 5.396484 GGTTCTGTTTAATCCCGTTTAAGC 58.604 41.667 0.00 0.00 0.00 3.09
2141 2410 5.946298 GGGTTCTGTTTAATCCCGTTTAAG 58.054 41.667 0.00 0.00 0.00 1.85
2142 2411 5.963176 GGGTTCTGTTTAATCCCGTTTAA 57.037 39.130 0.00 0.00 0.00 1.52
2148 2417 2.502142 ACCGGGTTCTGTTTAATCCC 57.498 50.000 6.32 0.00 35.22 3.85
2149 2418 4.761227 TGTAAACCGGGTTCTGTTTAATCC 59.239 41.667 8.78 0.00 38.32 3.01
2150 2419 5.945466 TGTAAACCGGGTTCTGTTTAATC 57.055 39.130 8.78 0.00 38.32 1.75
2151 2420 5.416639 GGATGTAAACCGGGTTCTGTTTAAT 59.583 40.000 8.78 0.00 38.32 1.40
2152 2421 4.761227 GGATGTAAACCGGGTTCTGTTTAA 59.239 41.667 8.78 0.00 38.32 1.52
2153 2422 4.325972 GGATGTAAACCGGGTTCTGTTTA 58.674 43.478 8.78 0.00 36.23 2.01
2154 2423 3.151554 GGATGTAAACCGGGTTCTGTTT 58.848 45.455 8.78 0.00 38.22 2.83
2155 2424 2.553685 GGGATGTAAACCGGGTTCTGTT 60.554 50.000 8.78 0.00 0.00 3.16
2156 2425 1.003928 GGGATGTAAACCGGGTTCTGT 59.996 52.381 8.78 0.00 0.00 3.41
2157 2426 1.280998 AGGGATGTAAACCGGGTTCTG 59.719 52.381 8.78 0.00 0.00 3.02
2158 2427 1.280998 CAGGGATGTAAACCGGGTTCT 59.719 52.381 8.78 0.00 0.00 3.01
2159 2428 1.003928 ACAGGGATGTAAACCGGGTTC 59.996 52.381 8.78 0.54 0.00 3.62
2160 2429 1.069775 ACAGGGATGTAAACCGGGTT 58.930 50.000 10.96 10.96 0.00 4.11
2161 2430 0.326927 CACAGGGATGTAAACCGGGT 59.673 55.000 6.32 0.00 0.00 5.28
2162 2431 0.616371 TCACAGGGATGTAAACCGGG 59.384 55.000 6.32 0.00 0.00 5.73
2163 2432 1.278127 ACTCACAGGGATGTAAACCGG 59.722 52.381 0.00 0.00 0.00 5.28
2164 2433 2.028476 TCACTCACAGGGATGTAAACCG 60.028 50.000 0.00 0.00 0.00 4.44
2165 2434 3.695830 TCACTCACAGGGATGTAAACC 57.304 47.619 0.00 0.00 0.00 3.27
2172 2441 0.107312 GCTGCATCACTCACAGGGAT 60.107 55.000 0.00 0.00 39.37 3.85
2173 2442 1.297689 GCTGCATCACTCACAGGGA 59.702 57.895 0.00 0.00 28.63 4.20
2174 2443 1.002990 TGCTGCATCACTCACAGGG 60.003 57.895 0.00 0.00 31.94 4.45
2175 2444 0.604511 TGTGCTGCATCACTCACAGG 60.605 55.000 20.42 0.00 37.81 4.00
2176 2445 0.516001 GTGTGCTGCATCACTCACAG 59.484 55.000 20.42 0.00 39.73 3.66
2177 2446 0.107268 AGTGTGCTGCATCACTCACA 59.893 50.000 23.05 10.98 40.28 3.58
2178 2447 2.924185 AGTGTGCTGCATCACTCAC 58.076 52.632 23.05 17.75 40.28 3.51
2181 2450 0.321387 CTGGAGTGTGCTGCATCACT 60.321 55.000 26.45 26.45 45.81 3.41
2182 2451 1.919956 GCTGGAGTGTGCTGCATCAC 61.920 60.000 13.71 13.71 42.17 3.06
2183 2452 1.673337 GCTGGAGTGTGCTGCATCA 60.673 57.895 5.27 3.06 42.17 3.07
2184 2453 2.747822 CGCTGGAGTGTGCTGCATC 61.748 63.158 5.27 0.00 42.17 3.91
2185 2454 2.745100 CGCTGGAGTGTGCTGCAT 60.745 61.111 5.27 0.00 42.17 3.96
2186 2455 3.755526 AACGCTGGAGTGTGCTGCA 62.756 57.895 0.00 0.00 40.83 4.41
2187 2456 2.974698 AACGCTGGAGTGTGCTGC 60.975 61.111 0.00 0.00 38.96 5.25
2188 2457 2.941333 CAACGCTGGAGTGTGCTG 59.059 61.111 0.00 0.00 38.96 4.41
2189 2458 2.974698 GCAACGCTGGAGTGTGCT 60.975 61.111 0.00 0.00 38.96 4.40
2190 2459 3.279116 TGCAACGCTGGAGTGTGC 61.279 61.111 0.00 1.50 38.96 4.57
2191 2460 2.633657 GTGCAACGCTGGAGTGTG 59.366 61.111 0.00 0.00 38.96 3.82
2192 2461 2.591715 GGTGCAACGCTGGAGTGT 60.592 61.111 0.00 0.00 41.05 3.55
2193 2462 3.716006 CGGTGCAACGCTGGAGTG 61.716 66.667 13.03 0.00 38.12 3.51
2194 2463 4.235762 ACGGTGCAACGCTGGAGT 62.236 61.111 26.87 0.00 38.12 3.85
2195 2464 3.716006 CACGGTGCAACGCTGGAG 61.716 66.667 26.87 5.33 38.12 3.86
2196 2465 4.539083 ACACGGTGCAACGCTGGA 62.539 61.111 26.87 0.00 38.12 3.86
2197 2466 4.312231 CACACGGTGCAACGCTGG 62.312 66.667 26.87 16.87 38.12 4.85
2198 2467 4.312231 CCACACGGTGCAACGCTG 62.312 66.667 26.87 22.80 38.12 5.18
2201 2470 4.312231 CTGCCACACGGTGCAACG 62.312 66.667 25.19 25.19 38.12 4.10
2213 2482 1.216444 CTGCTACGCTCTTCTGCCA 59.784 57.895 0.00 0.00 0.00 4.92
2239 2508 7.044181 TGTGAGAGATTTTGGAATACAGCTAG 58.956 38.462 0.00 0.00 0.00 3.42
2240 2509 6.946340 TGTGAGAGATTTTGGAATACAGCTA 58.054 36.000 0.00 0.00 0.00 3.32
2286 2555 1.000163 GGCACGACTCTTCAGTCTTCA 60.000 52.381 0.00 0.00 46.31 3.02
2287 2556 1.271102 AGGCACGACTCTTCAGTCTTC 59.729 52.381 0.00 0.00 46.31 2.87
2288 2557 1.000283 CAGGCACGACTCTTCAGTCTT 60.000 52.381 0.00 0.00 46.31 3.01
2289 2558 0.600557 CAGGCACGACTCTTCAGTCT 59.399 55.000 0.00 0.00 46.31 3.24
2290 2559 0.389166 CCAGGCACGACTCTTCAGTC 60.389 60.000 0.00 0.00 45.19 3.51
2291 2560 1.668294 CCAGGCACGACTCTTCAGT 59.332 57.895 0.00 0.00 34.57 3.41
2292 2561 1.079543 CCCAGGCACGACTCTTCAG 60.080 63.158 0.00 0.00 0.00 3.02
2306 2575 2.503895 AGAATTCAGCTCCAACCCAG 57.496 50.000 8.44 0.00 0.00 4.45
2390 2659 6.207417 CCAGTGAGTTTGATTCCATTGTTACT 59.793 38.462 0.00 0.00 0.00 2.24
2410 2681 0.609957 TGCATTTGAGGGCTCCAGTG 60.610 55.000 0.00 0.00 0.00 3.66
2413 2684 1.304381 GGTGCATTTGAGGGCTCCA 60.304 57.895 0.00 0.00 41.90 3.86
2427 2698 4.111016 GGCCGGCGTTTAAGGTGC 62.111 66.667 22.54 0.00 0.00 5.01
2430 2701 2.046700 TCTGGCCGGCGTTTAAGG 60.047 61.111 22.54 4.99 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.