>input_sequence_78108
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--------------------------------------------ATGGCAGCTCTCAAGCAGAGTGCTCTCAAGGGTGCC
TTCGCACAGCATTTCGAGGTCGTGGCCATCCTTGCGGGCCTCTTCGTCTTCGCGGTCCTCGTCACTCCGTCGCCGCCGGT
GCAGGGCTCCCTCCGTCCCCCCAGCGTTTGTGTCGTGCCGTACGTCTACTACGAGCGGATCGGCATGATACAGCCCTACC
TCTTGTTCTCCATCCTCGTCTCCGGCCTCCTCACCTCCAGCCTCAAGCGCCGCACCGCCGCGGCCGACGCGCCCACGCCG
ACTCCGTGGATCCGAGCATATGGGATGCTGGCTCTCCTCCTGTCGTTCGTGAGCATCGTTCTTCTCGCGGTGCTCGATTT
CTACCTGGTGCAGGTGAAGTCTTCGACCTTCTCTTGCTGGAGCGGGGCAAGCAAGGCCTCTGCCTACACCTTCGGCACCT
TCGTTGGCGTAGCGTGCGTGGCTACCTACTATGAGCTCGCGACGGTCATCATGTGGGCTGCTTACTAG------------
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>chr4B_1_TraesCS4B01G396600
GTAGTAATGTAAGTAGGTCAGAATTCATTTCATTGGCTGCTTGTGGAGGCTGTAGTACTAGTCCGTGCTTGCTTTTCAGT
GTTCCCCCTTGCATCAGTTCGGCCATTGTAATTTGGGATCGTTTGCTGTAACTCCTGTCCGGTTGATGATTTTGTTAATT
CAAAGCCGGTCCGCGAGCCTTGGTTCTAAAAAAAATAATCTCATAATTTGATGGAGTTCTATAAAGTTTTTAAGTTATCT
TATTATTGTCTTTTCTATATATGTAGTAGTGTAATTAGGGTATCCAGCCCCGGCACTCAATTGGCTTGGTAAACCCAAAG
AAGCAATACGTGGAGCAGTGTGCAAAATGCACAGCGGTCACATGCTTGCTTCCCATTTTTGAAACGAAAAGGATTTGACA
ACCGGGGGAGGCCCCATCTCTCAAACTGCGAGAGGGGATCGAGGCTGCATCGCTCAAACTGGGAGTAGTAGTAATGTAAG
TAGGTGGCTCTCTCCATAAATAAA----------------------------AGGAATTGAATTCTGCGGGAAGCTAGGT
GCAGACGCCGGATCGTGGAGCCCAAATCTTCTGCAGCAGCGGCATAATCACGATTCA-----------------------
-------------------------AGCTATGGCAGCCAGCACTTGTAGTAACACTCCATAAGCACTTGTATTA------
---------------TATTTAAACAAAGCCAACATCACTCCCTGC----------------CCGTTGCCCCCGTGGTACT
CCTACTTGGGTTAATTAGGTTATTGTATGAGAGGATAAAATAATACAGCTTCGCCCCACCTTCTTCCCTATATAA----T
CGCCTCCCCACTCCATACCTCCTCCTAGCTCCACCGTCG-----------------------------------------
------TCCTCCTCCTCACGCGCGGCGCGACCCACTCCAGCTGCGTTTGCTGCGCAGCGTTCGTCCTCCTCCGCACGCGC
CTCGTCTTTGTAAGTGCTCCTCTTTCCTCTGTTCATGCATTCTGCTTAGGCATCACGGCCGGGTTCTTGTGCCTCTTAAT
TTCTCACCTAAACCTTGTGGAATTTGTTGACCCACCGCAGGAGCATGGCAGCTCTCAAGCAGAGTGCTCTCAAGGGTGCC
TTCGCACAGCATTTCGAGGTCGTGGCCATCCTTGCGGGCCTCTTCGTCTTCGCGGTCCTCGTCACTCCGTCGCCGCCGGT
GCAGGGCTCCCTCCGTCCCCCCAGCGTTTGTGTCGTGCCGTACGTCTACTACGAGCGGATCGGCATGATACAGCCCTACC
TCTTGTTCTCCATCCTCGTCTCCGGCCTCCTCACCTCCAGCCTCAAGCGCCGCACCGCCGCGGCCGACGCGCCCACGCCG
ACTCCGTGGATCCGAGCATATGGGATGCTGGCTCTCCTCCTGTCGTTCGTGAGCATCGTTCTTCTCGCGGTGCTCGATTT
CTACCTGGTGCAGGTGAAGTCTTCGACCTTCTCTTGCTGGAGCGGGGCAAGCAAGGCCTCTGCCTACACCTTCGGCACCT
TCGTTGGCGTAGCGTGCGTGGCTACCTACTATGAGCTCGCGACGGTCATCATGTGGGCTGCTTACTAGTCTTTTCGATCG
ATTATGGCTCGACTATTACCATGTCATTACTCATTAGTACTGCTGTCTTTCCAATTATCGATCAGATGGTGATGAGTGTG
TGAGGTGTGAGGTATCCTATATATCTTCTCTGGATGTATGCATTTGAGAACTTTCCTTATATGATATGTATTACCGGAGT
GTTAGTGGAGAAAATCAACATGTAATAATCAGTTTCAGTTGTTAACTTGCTCCGCTTGGAATGAT----TCAGTTTCTGC
CATCGGCTTGTGATATACTCCTTGCGTGAAATGTAATGATTCACTGTATTCAGGTCCAGGTCCATATATAGATTATTCCT
TGGGTCACATGCCATCCACTTGCCTCCCCGGCCAT------GCATGCTATATGTACACCATGGAGTATACAACCGTCGTA
TACTCGTATCTGTCAAGTACACGCTTC-----------------------------------------------------
-------AACAAGGTTCTTTGTT-------------------------------GCAAAAAAGTACTACAAGTGCACCTG
CCCCGGAGAGCCACCCCTCCCACTCCCAGGGTGCATTGTCAAATCACGTTAATGAGTGAAATGTAATAAACGGCACCCGC
AATTCCCATTTAGTCAGATT--TAGTTAGCTCCATAGTTCAGTTTTCCTTTAAA-AAAATATTACTGAACCATTAGATCA
GTAAGTGGGCTTAAACGGGATTAAACAGAACCCGGTTTACATCCCTGTGAGTGATGCAGCACACTCCAGCGTTGCACCGT
GTGGCAGAAGAGCGTAGCAGTCCACATCTAGCTGTATTCCAAAATCTCTCACAGCCACGAGCGAGCCTTCTTGGTGAAGA
CTGAAGAGTCGTGCCTGGGTTGGAGCTGAATTCTAAAGGAAAATTGTGAGCAGTAGGAAATTACCCAGTTTGTACAACAT
TATTTACACCCATGAAACAG--TAACAATGGAATCAAACTCACTGGAGCCCTCAAATGCACCTTAAACGCCGGCCAGACT
GCCCAGAGTAAAA-TTGCCACCTAACCGGGCTCCCCAGAACCAGCCCAATCGCCC
>chrUn_1
GTAGTAATGTAAGTAGGTCAGAATTCATTTCATTAGCTGCTTGTGGAGGTCGTAGTTC--------------------GT
GTTCCCCATTGTATCGGTTTGGCCGTTGTAATTTGGGGTTGTTTGTTGTAACTCATGGCCAGTTGATGACTTTGTTAATT
CAAAGACGGTCCGCAAGCCTTG----------------------------------------------------------
--------------------------------------------------------------------GTAAACCCAAAG
AGGCAATACGTGGAGCAGTGTGCAAAATGCACAGCGGTCACATGCTTGCCTCCCATTTTTGAAACGAAAAGGATTTGACA
ACCGGGGGAGGCTGCATCTCTCAAACTGAGAGAGAGG--------------GCTCAAACTGGGAGTAGTAGTAATGTAAG
TAGGTGGCTCTCTCCATAAACACACGACGAGCCACAAAGAAAAGCTTGAGGCAGGAATTGAATTCTGCGGGAAGC-----
---------------------CCAAATCTTGTGCAGCAGCGGCATCATCATGTCACATCCGGGTGGCTCTCTGTGAAGTA
GTACTACTCCTATAATATCCAAGCGAGCTATGGCAGCCAGCACTCTCGAGCTTTGTATGAATATCCTGTACGTGTAGTAT
TATTGAGTAGAGAATTATCTAAACAACGCCAACATCACTCTCTGCCTCCTTCCCTGCCCGGCCGTTGCCCCCGTGG----
--TACTTGGGTTAATTAGGTTATT--ATGAGAAGATAAAATAATACAGCTTCGCCCCACCCTCT-CCCTATATAATCGGT
CGCCTCCCCACTCCATACCTCCTCCTAGCTCCACTGTCCTCCTCCTCTCCTCACGTCAGTCAACGTCCATCTGCATTTGC
TGGTCCTCCTCCTCCTCACGCGCGGCGCGACCCACTCCAGCTGCGTTTGCTGCGCAGCGTTCCTCCTCCTCCGCACGCGC
CTCGTGTTTGTAAGTGCTCCTCTTTCCTCTCTTCATGCATTCTGCTTAGGCATCA----CGGGTTCTTGTGCCTCTTAAT
TTCTCACCTAAACCATGCGGCATTTGTTGACCCACCGCAGGAGCATGGCAGTTCTCAAGGACA---------------CC
TTCGCACACCATTTCGAGGTCGTGGCCATCCTTGCGGGCCTCTTCGTCTTCGTGGTCCTCGTCACTCCGTCGCCGCCGGT
GCAGGGCTCGCTCCGTCCGCCCAGCGTTTGCGTCGCACCGTACGTCTACTACGAGCGGATCGGCATGATACAGCCCTACC
TCTTGTTCTCCATCCTTGTCTCCGGCCTCCTCACCTCCAGCCTCAAGCGCCGCACCGCCGCGGCCGACGCGCCCCCGCCG
ACTCTGTGGATCCGAGCATATGGGATGCTGGCTCTCCTCCTGTCGTTCGTGAGCATCCTTCTTCTCGCGGTGCTCGCGTC
CTACATGGCGCAGGTGAGGTCTTCGACCTTCTCTTGCTGGAGCGGGGCAAGCAAGGCCTCTGCCTGCATCTTCGGCACCT
TCGTTGGCCTAGTGTGTGTGGCTACCTACTATGAGCTCGCGACAGTCATCATGTGGGCTGCTTACTAGTCTTTTCGATCG
ATTATGGCTCGACTATTACCATG-------TCATTAGTACTGCTGTCTTTCCAATTATC----AGATGGTGATGGGTATG
TGAGGTGTGATGTATCTTATCTC----CTTTGGATGTATGCATTTGAGAACTTTCCTTATATGCTAT------CCGGAGT
GTTAGTGGAGAAAATCATCATGTAATAATCAGTTTCAGTTGTTAACTTGGTTCGCTTGGAATGATTCGATCAGTTTCTGC
CATCCGACTTGTGCTATA-----------------------CACTGTATTCAGGTCCAGGT--------------TTCCT
TGGGTCACATGCCATCCACTTGCCTCCCCGGCCATGCCCGTGCATGCTATGTGTACACGACGGAGTATGCAACCG-----
---TCGTATCTGTCAAGTACACACTTCGCCACACTTTCGTAACATGCATGCTTAATTTATCAGCGACGACTTCTAGATAC
CGAGCCAAACAAGGTTCTTTGCAGCATTGCCAGACTAAAGCACTGCGTACGCAAGCAAAAAAGTAC--------------
--------AGCCACCCCTCCCACTCCCAGGGTGCATTGTCAAATCACGTTAATGAGTGAAATGTAATAAACGGCACCCGC
AATTCCCATGTAGTCAGATTCATAGTTAGCTCGATAGTTCAGTTTTCCTTTAAACAAAACATTATTGAACCATTAGATCA
GTAAGT----------------------------------------------------------------GTTGCACCGT
GGGGCAGAAGAGCGTAGCAGTCCACATTGAGCTGTATTCCAAAATCTCTCACAGCCACGAGCGAGCCTTCTTGG------
-TGAAGAGTCGTGCTTGGGTTGGAGCTGAATTCTAAAGGAAAATTGTGAGCAGTAGGAAATTACCCAGTTTGTACAACAT
TATTTACACCCATGAAACCGTATAACAATGGAATCAAACTAACCGGAGCCCTCAAATACAGCTTAAACGCCGGCCAGACT
GCCCAGAGTAAAAATTGCCACCTAACTGGGCTCCCCAGAACCAGCCCAATCGCCC
>SNPs
----------------------------------S--------------SS-----S-SSSSSSSSSSSSSSSSSSSS--
-------S---S---S---S----S------------S-S-----S--------S--S--S--------S----------
-----S--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-S-----------------------------------------------S------------------------------
------------SS--------------S-----S--SSSSSSSSSSSSSS-----------------------------
--------------------S-S----------------------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSS---------S--------------S----S-SSS-------------------------
--------------------------------------------SSSSSSSSSSS-SSSS-SSSS--SSSSS-S------
------------------S-------S-------------S-----------------------------------SSSS
SS----------------------SS------S---------------------------S---S---------------
----------------------------------S---S-----------------------------------------
--------------------------------------------------------------S-----------------
-----S------------------------S------------------------SSSS---------------------
--------------S--S--S------------------------------S-------S-S-SSSSSSSSSSSSSSS--
--------S-------------------------------------------S---------------------------
---------S--------S-----------S----SS-------------------------------------------
----------------S---------------------------------------------------------S-----
----S----------------------------------------------------S------------------SS-S
----S---S--------S-----------------------------------------------S--S-----------
--------S---S---S--------------------------S------------------------------------
-----------------------SSSSSSS-----------------------------SSSS-----------S--S--
----------S-----S---S-SSSSS--S---------------------------------S---SSSSSS-------
-----------------S-------------------------------S-S----------------------------
----S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SSSSSSSSSSSSSS-----
--------------------------------------------------S-------S-S-------S------SSSSS
SSS-------------------S---------------------------------------------------------
---------------------SS-------------------------------------------SSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
---------S----------------------S--------------------------S----S---------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-S-------------------------SS---------------------------------------------SSSSSS
S-------------S-----------------------------------------------------------------
------------------S---------------------S--S-------------S--S-------------------
--------------------------S----------------------------
>forward_614
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----------------------------------AGCAGCGGCATAATCACGAT--------------------------
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>reverse_2446
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---------------------------------------------TGTGAGTGATGCAGCACACT---------------
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