Multiple sequence alignment - TraesCS4B01G382800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G382800 chr4B 100.000 2558 0 0 1 2558 662155839 662158396 0.000000e+00 4724.0
1 TraesCS4B01G382800 chr4B 93.333 45 3 0 2169 2213 602780994 602780950 1.640000e-07 67.6
2 TraesCS4B01G382800 chr5A 88.772 1808 102 33 640 2391 702190940 702192702 0.000000e+00 2121.0
3 TraesCS4B01G382800 chr5A 89.780 499 37 12 149 639 702190192 702190684 6.010000e-176 627.0
4 TraesCS4B01G382800 chr5A 85.938 128 15 3 1923 2049 394073977 394073852 1.600000e-27 134.0
5 TraesCS4B01G382800 chr7B 93.924 790 31 11 1 786 654946358 654945582 0.000000e+00 1177.0
6 TraesCS4B01G382800 chr7B 96.053 152 6 0 807 958 654945431 654945280 5.470000e-62 248.0
7 TraesCS4B01G382800 chr4D 80.088 678 97 21 903 1561 506029718 506030376 1.070000e-128 470.0
8 TraesCS4B01G382800 chr3D 85.185 135 18 2 1922 2055 601236400 601236533 1.230000e-28 137.0
9 TraesCS4B01G382800 chr3D 84.615 117 16 2 1929 2044 600566071 600566186 5.780000e-22 115.0
10 TraesCS4B01G382800 chr3B 90.385 104 9 1 1929 2032 791274155 791274053 4.440000e-28 135.0
11 TraesCS4B01G382800 chr3B 91.379 58 4 1 2166 2223 22795750 22795806 7.590000e-11 78.7
12 TraesCS4B01G382800 chr3B 87.273 55 6 1 2160 2213 755983369 755983423 7.640000e-06 62.1
13 TraesCS4B01G382800 chr6D 88.542 96 10 1 1929 2024 13676316 13676410 5.780000e-22 115.0
14 TraesCS4B01G382800 chr1A 84.034 119 18 1 1920 2038 10140216 10140333 2.080000e-21 113.0
15 TraesCS4B01G382800 chr1A 96.078 51 2 0 2164 2214 516661679 516661629 1.630000e-12 84.2
16 TraesCS4B01G382800 chr1D 83.898 118 17 2 1927 2043 460759232 460759348 7.480000e-21 111.0
17 TraesCS4B01G382800 chr1D 100.000 35 0 0 2179 2213 473582666 473582700 5.910000e-07 65.8
18 TraesCS4B01G382800 chrUn 82.171 129 21 2 1921 2049 262403830 262403704 2.690000e-20 110.0
19 TraesCS4B01G382800 chrUn 90.909 44 1 2 2173 2213 165283334 165283291 3.560000e-04 56.5
20 TraesCS4B01G382800 chr4A 94.340 53 2 1 2171 2223 42833606 42833657 2.110000e-11 80.5
21 TraesCS4B01G382800 chr4A 95.652 46 2 0 2169 2214 608157388 608157343 9.820000e-10 75.0
22 TraesCS4B01G382800 chr7A 95.652 46 2 0 2169 2214 125693784 125693739 9.820000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G382800 chr4B 662155839 662158396 2557 False 4724.0 4724 100.0000 1 2558 1 chr4B.!!$F1 2557
1 TraesCS4B01G382800 chr5A 702190192 702192702 2510 False 1374.0 2121 89.2760 149 2391 2 chr5A.!!$F1 2242
2 TraesCS4B01G382800 chr7B 654945280 654946358 1078 True 712.5 1177 94.9885 1 958 2 chr7B.!!$R1 957
3 TraesCS4B01G382800 chr4D 506029718 506030376 658 False 470.0 470 80.0880 903 1561 1 chr4D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 378 0.327576 AGAACTCCCCCACCCCTATG 60.328 60.0 0.0 0.0 0.0 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2658 0.038526 CAGCAAGTAGGGACGACGTT 60.039 55.0 0.13 0.0 39.49 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 8.749841 TGTAAACGGGAATAAACAAATGATTG 57.250 30.769 0.00 0.00 42.46 2.67
104 106 2.074124 GCTGCAGCACGAGTAGTTC 58.926 57.895 33.36 0.00 41.59 3.01
167 169 1.822990 TCGACAACACCCCTCATCTAC 59.177 52.381 0.00 0.00 0.00 2.59
207 209 5.479375 TGATGATCATATGTCTGCTGCTAGA 59.521 40.000 8.54 0.00 0.00 2.43
208 210 5.388408 TGATCATATGTCTGCTGCTAGAG 57.612 43.478 1.90 0.00 0.00 2.43
278 280 7.610305 ACTTTGATATTTGTATGGTTTCGACCT 59.390 33.333 0.00 0.00 0.00 3.85
289 291 8.627403 TGTATGGTTTCGACCTAGTTATCTAAG 58.373 37.037 0.00 0.00 0.00 2.18
374 378 0.327576 AGAACTCCCCCACCCCTATG 60.328 60.000 0.00 0.00 0.00 2.23
532 540 6.635239 CACCAGACGAAACAAATTAACGATTT 59.365 34.615 0.00 0.00 38.49 2.17
628 638 5.705609 AGCCACAGTATTTGTTTGGTTAG 57.294 39.130 0.00 0.00 38.16 2.34
634 644 7.360946 CCACAGTATTTGTTTGGTTAGTCTAGC 60.361 40.741 0.00 0.00 38.16 3.42
723 988 8.348285 TGGAATAAAACTCCTTTCACCATAAG 57.652 34.615 0.00 0.00 33.77 1.73
771 1038 1.734465 CGCCCAGTTCAGAAACATCTC 59.266 52.381 0.00 0.00 37.88 2.75
777 1044 6.211515 CCCAGTTCAGAAACATCTCTTTTTG 58.788 40.000 0.00 0.00 37.88 2.44
778 1045 6.183360 CCCAGTTCAGAAACATCTCTTTTTGT 60.183 38.462 0.00 0.00 37.88 2.83
779 1046 7.260603 CCAGTTCAGAAACATCTCTTTTTGTT 58.739 34.615 0.00 0.00 37.88 2.83
780 1047 8.405531 CCAGTTCAGAAACATCTCTTTTTGTTA 58.594 33.333 0.00 0.00 37.88 2.41
781 1048 9.443283 CAGTTCAGAAACATCTCTTTTTGTTAG 57.557 33.333 0.00 0.00 37.88 2.34
782 1049 9.178758 AGTTCAGAAACATCTCTTTTTGTTAGT 57.821 29.630 0.00 0.00 37.88 2.24
954 1350 0.685131 CACACCCATGCATCCACCAT 60.685 55.000 0.00 0.00 0.00 3.55
958 1354 1.133388 ACCCATGCATCCACCATTAGG 60.133 52.381 0.00 0.00 42.21 2.69
999 1400 3.604772 GCATGCAAGATCGGTAAATCGAC 60.605 47.826 14.21 0.00 42.21 4.20
1323 1739 1.658717 CATCGCGTCGTCCTCCATC 60.659 63.158 5.77 0.00 0.00 3.51
1425 1841 4.027755 CGTGACAACGTCTTGGCT 57.972 55.556 0.00 0.00 44.93 4.75
1477 1893 0.776176 GGGGAGATTCAGGATGGCAT 59.224 55.000 0.00 0.00 36.16 4.40
1527 1946 0.953960 GGCATGGGAACGACGTTCTT 60.954 55.000 32.79 19.02 41.70 2.52
1536 1955 0.039074 ACGACGTTCTTCTGGAGCTG 60.039 55.000 0.00 0.00 0.00 4.24
1568 1987 2.030335 TGCATGCGTGAACATTATCGAC 59.970 45.455 14.09 0.00 0.00 4.20
1683 2102 4.804108 ACGAATTTCGGATGCAAATTGAA 58.196 34.783 21.71 0.00 45.59 2.69
1714 2137 1.354506 GATGATGCTTCAGCGCCAC 59.645 57.895 2.29 0.00 45.83 5.01
1744 2167 1.585002 GTGCGCGCTCTCACTCTAG 60.585 63.158 33.29 0.00 0.00 2.43
1753 2176 2.422235 GCTCTCACTCTAGCCTGGTCTA 60.422 54.545 0.00 0.00 32.40 2.59
1785 2208 3.370276 TGAAAATGTTCACACATGCACG 58.630 40.909 0.00 0.00 43.34 5.34
1825 2249 4.088762 CACTCGCCGCGCACAAAT 62.089 61.111 8.75 0.00 0.00 2.32
1828 2252 2.735677 CTCGCCGCGCACAAATACA 61.736 57.895 8.75 0.00 0.00 2.29
1836 2260 4.597079 CCGCGCACAAATACATTCTATTT 58.403 39.130 8.75 0.00 0.00 1.40
1861 2285 7.831753 TCTATGAGTACCTTCAAAAGACTGAG 58.168 38.462 0.00 0.00 0.00 3.35
1863 2287 4.100963 TGAGTACCTTCAAAAGACTGAGCA 59.899 41.667 0.00 0.00 0.00 4.26
1867 2291 2.478134 CCTTCAAAAGACTGAGCAGACG 59.522 50.000 4.21 0.00 0.00 4.18
1870 2309 2.300152 TCAAAAGACTGAGCAGACGGAT 59.700 45.455 4.21 0.00 0.00 4.18
1880 2319 2.917971 GAGCAGACGGATATTATCACGC 59.082 50.000 6.04 1.24 0.00 5.34
1889 2328 3.678548 GGATATTATCACGCGGGACTTTC 59.321 47.826 16.24 6.64 0.00 2.62
1902 2342 3.556213 CGGGACTTTCTGTGATGGTGTAA 60.556 47.826 0.00 0.00 0.00 2.41
1909 2349 3.814625 TCTGTGATGGTGTAAAAGTGCA 58.185 40.909 0.00 0.00 0.00 4.57
1910 2350 4.397420 TCTGTGATGGTGTAAAAGTGCAT 58.603 39.130 0.00 0.00 0.00 3.96
1911 2351 4.216042 TCTGTGATGGTGTAAAAGTGCATG 59.784 41.667 0.00 0.00 0.00 4.06
1912 2352 3.244976 GTGATGGTGTAAAAGTGCATGC 58.755 45.455 11.82 11.82 0.00 4.06
1913 2353 3.057315 GTGATGGTGTAAAAGTGCATGCT 60.057 43.478 20.33 0.00 0.00 3.79
1914 2354 3.191162 TGATGGTGTAAAAGTGCATGCTC 59.809 43.478 20.33 15.94 0.00 4.26
1915 2355 2.862541 TGGTGTAAAAGTGCATGCTCT 58.137 42.857 20.33 18.23 0.00 4.09
1916 2356 4.014569 TGGTGTAAAAGTGCATGCTCTA 57.985 40.909 21.70 4.71 0.00 2.43
1917 2357 4.002982 TGGTGTAAAAGTGCATGCTCTAG 58.997 43.478 21.70 0.00 0.00 2.43
1918 2358 4.003648 GGTGTAAAAGTGCATGCTCTAGT 58.996 43.478 21.70 14.73 0.00 2.57
1919 2359 4.093556 GGTGTAAAAGTGCATGCTCTAGTC 59.906 45.833 21.70 12.96 0.00 2.59
1959 2399 6.943146 CCTAATAATAAAGGGAGGAGGCTTTC 59.057 42.308 0.00 0.00 0.00 2.62
1968 2408 3.181459 GGGAGGAGGCTTTCATAGTTCTC 60.181 52.174 0.00 0.00 0.00 2.87
1976 2416 5.370880 AGGCTTTCATAGTTCTCCATATGGT 59.629 40.000 21.28 4.34 36.34 3.55
1981 2421 7.496346 TTCATAGTTCTCCATATGGTATCCC 57.504 40.000 21.28 7.26 36.34 3.85
1983 2423 4.510303 AGTTCTCCATATGGTATCCCCT 57.490 45.455 21.28 8.30 36.34 4.79
1990 2430 9.588432 TTCTCCATATGGTATCCCCTTTATATT 57.412 33.333 21.28 0.00 36.34 1.28
1991 2431 9.225682 TCTCCATATGGTATCCCCTTTATATTC 57.774 37.037 21.28 0.00 36.34 1.75
1992 2432 8.941639 TCCATATGGTATCCCCTTTATATTCA 57.058 34.615 21.28 0.00 36.34 2.57
2022 2462 9.787532 ATTTTGTGATAACCATAAAGATTGACG 57.212 29.630 0.00 0.00 37.22 4.35
2023 2463 6.918892 TGTGATAACCATAAAGATTGACGG 57.081 37.500 0.00 0.00 0.00 4.79
2024 2464 6.645306 TGTGATAACCATAAAGATTGACGGA 58.355 36.000 0.00 0.00 0.00 4.69
2025 2465 7.279615 TGTGATAACCATAAAGATTGACGGAT 58.720 34.615 0.00 0.00 0.00 4.18
2026 2466 7.226523 TGTGATAACCATAAAGATTGACGGATG 59.773 37.037 0.00 0.00 0.00 3.51
2027 2467 7.226720 GTGATAACCATAAAGATTGACGGATGT 59.773 37.037 0.00 0.00 0.00 3.06
2093 2533 8.217131 AGTATGTACACATTGACACGTCTATA 57.783 34.615 0.00 0.00 37.76 1.31
2098 2538 8.083462 TGTACACATTGACACGTCTATAAAGAA 58.917 33.333 0.00 0.00 32.16 2.52
2099 2539 9.084164 GTACACATTGACACGTCTATAAAGAAT 57.916 33.333 0.00 0.00 32.16 2.40
2143 2583 1.168714 GAGGAATCCAACCTGCACAC 58.831 55.000 0.61 0.00 37.93 3.82
2144 2584 0.478072 AGGAATCCAACCTGCACACA 59.522 50.000 0.61 0.00 36.30 3.72
2146 2586 1.686052 GGAATCCAACCTGCACACAAA 59.314 47.619 0.00 0.00 0.00 2.83
2157 2597 6.254281 ACCTGCACACAAACATATTAGTTC 57.746 37.500 0.00 0.00 0.00 3.01
2184 2625 7.741554 AAAAAGGATATGTCTAGGTCTCAGT 57.258 36.000 0.00 0.00 0.00 3.41
2185 2626 6.969993 AAAGGATATGTCTAGGTCTCAGTC 57.030 41.667 0.00 0.00 0.00 3.51
2186 2627 4.647611 AGGATATGTCTAGGTCTCAGTCG 58.352 47.826 0.00 0.00 0.00 4.18
2187 2628 4.348461 AGGATATGTCTAGGTCTCAGTCGA 59.652 45.833 0.00 0.00 0.00 4.20
2188 2629 4.453136 GGATATGTCTAGGTCTCAGTCGAC 59.547 50.000 7.70 7.70 0.00 4.20
2189 2630 3.637911 ATGTCTAGGTCTCAGTCGACT 57.362 47.619 13.58 13.58 34.38 4.18
2190 2631 2.701107 TGTCTAGGTCTCAGTCGACTG 58.299 52.381 34.76 34.76 45.08 3.51
2217 2658 1.654954 GCGAAGTCTCAGTCGGGCTA 61.655 60.000 0.00 0.00 37.73 3.93
2223 2664 1.226323 CTCAGTCGGGCTAACGTCG 60.226 63.158 0.00 0.00 34.94 5.12
2232 2673 0.813821 GGCTAACGTCGTCCCTACTT 59.186 55.000 0.00 0.00 0.00 2.24
2234 2675 1.905449 CTAACGTCGTCCCTACTTGC 58.095 55.000 0.00 0.00 0.00 4.01
2238 2679 0.456312 CGTCGTCCCTACTTGCTGTC 60.456 60.000 0.00 0.00 0.00 3.51
2278 2726 2.956987 CCTGGCCTTGCTTGTTCG 59.043 61.111 3.32 0.00 0.00 3.95
2286 2734 1.601903 CCTTGCTTGTTCGTTGCTGTA 59.398 47.619 0.00 0.00 0.00 2.74
2299 2747 5.297547 TCGTTGCTGTATTTTCTCTGTCTT 58.702 37.500 0.00 0.00 0.00 3.01
2305 2753 5.073311 TGTATTTTCTCTGTCTTCCTCGG 57.927 43.478 0.00 0.00 0.00 4.63
2310 2758 0.528470 CTCTGTCTTCCTCGGTGGAC 59.472 60.000 0.00 0.00 46.14 4.02
2317 2765 3.706373 CCTCGGTGGACCTGGGTG 61.706 72.222 0.00 0.00 38.35 4.61
2324 2772 3.408853 GGACCTGGGTGGGGCTAC 61.409 72.222 0.00 0.00 41.11 3.58
2333 2781 1.746991 GTGGGGCTACTGCTTGCTC 60.747 63.158 0.00 0.00 39.59 4.26
2335 2783 2.266055 GGGCTACTGCTTGCTCGT 59.734 61.111 0.00 0.00 39.59 4.18
2337 2785 2.103042 GGCTACTGCTTGCTCGTGG 61.103 63.158 0.00 0.00 39.59 4.94
2362 2810 0.586802 GAACTTGGTGCGTGAGGTTC 59.413 55.000 0.00 0.00 0.00 3.62
2371 2819 3.431233 GGTGCGTGAGGTTCTTAAAGTAC 59.569 47.826 0.00 0.00 0.00 2.73
2375 2823 3.916776 CGTGAGGTTCTTAAAGTACCGAC 59.083 47.826 0.00 0.00 40.19 4.79
2379 2827 3.057245 AGGTTCTTAAAGTACCGACGGAC 60.057 47.826 23.38 14.22 40.19 4.79
2384 2832 5.540911 TCTTAAAGTACCGACGGACAATTT 58.459 37.500 23.38 19.72 0.00 1.82
2386 2834 2.375173 AGTACCGACGGACAATTTCC 57.625 50.000 23.38 0.00 41.75 3.13
2391 2839 2.033675 ACCGACGGACAATTTCCAAAAC 59.966 45.455 23.38 0.00 46.29 2.43
2392 2840 2.292292 CCGACGGACAATTTCCAAAACT 59.708 45.455 8.64 0.00 46.29 2.66
2393 2841 3.243267 CCGACGGACAATTTCCAAAACTT 60.243 43.478 8.64 0.00 46.29 2.66
2394 2842 4.356289 CGACGGACAATTTCCAAAACTTT 58.644 39.130 7.24 0.00 46.29 2.66
2395 2843 4.801516 CGACGGACAATTTCCAAAACTTTT 59.198 37.500 7.24 0.00 46.29 2.27
2396 2844 5.289917 CGACGGACAATTTCCAAAACTTTTT 59.710 36.000 7.24 0.00 46.29 1.94
2415 2863 4.781775 TTTTACCAAAGGACAGAGGTCA 57.218 40.909 0.00 0.00 46.17 4.02
2416 2864 4.781775 TTTACCAAAGGACAGAGGTCAA 57.218 40.909 0.00 0.00 46.17 3.18
2417 2865 2.640316 ACCAAAGGACAGAGGTCAAC 57.360 50.000 0.00 0.00 46.17 3.18
2418 2866 1.843851 ACCAAAGGACAGAGGTCAACA 59.156 47.619 0.00 0.00 46.17 3.33
2419 2867 2.222027 CCAAAGGACAGAGGTCAACAC 58.778 52.381 0.00 0.00 46.17 3.32
2420 2868 2.421388 CCAAAGGACAGAGGTCAACACA 60.421 50.000 0.00 0.00 46.17 3.72
2421 2869 2.614057 CAAAGGACAGAGGTCAACACAC 59.386 50.000 0.00 0.00 46.17 3.82
2422 2870 1.496060 AGGACAGAGGTCAACACACA 58.504 50.000 0.00 0.00 46.17 3.72
2423 2871 1.139058 AGGACAGAGGTCAACACACAC 59.861 52.381 0.00 0.00 46.17 3.82
2424 2872 1.134521 GGACAGAGGTCAACACACACA 60.135 52.381 0.00 0.00 46.17 3.72
2425 2873 1.933853 GACAGAGGTCAACACACACAC 59.066 52.381 0.00 0.00 43.73 3.82
2426 2874 1.277842 ACAGAGGTCAACACACACACA 59.722 47.619 0.00 0.00 0.00 3.72
2427 2875 1.665679 CAGAGGTCAACACACACACAC 59.334 52.381 0.00 0.00 0.00 3.82
2428 2876 1.277842 AGAGGTCAACACACACACACA 59.722 47.619 0.00 0.00 0.00 3.72
2429 2877 1.396996 GAGGTCAACACACACACACAC 59.603 52.381 0.00 0.00 0.00 3.82
2430 2878 1.160989 GGTCAACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
2431 2879 1.135803 GGTCAACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
2432 2880 1.533299 GTCAACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2433 2881 1.533299 TCAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
2434 2882 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.00 0.00 4.49
2435 2883 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2436 2884 2.021243 CACACACACACACACGCG 59.979 61.111 3.53 3.53 0.00 6.01
2437 2885 3.860125 ACACACACACACACGCGC 61.860 61.111 5.73 0.00 0.00 6.86
2438 2886 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
2455 2903 4.250431 GCGCCCACACACACACAC 62.250 66.667 0.00 0.00 0.00 3.82
2456 2904 2.821810 CGCCCACACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
2457 2905 2.798009 GCCCACACACACACACAC 59.202 61.111 0.00 0.00 0.00 3.82
2458 2906 2.043405 GCCCACACACACACACACA 61.043 57.895 0.00 0.00 0.00 3.72
2459 2907 1.800032 CCCACACACACACACACAC 59.200 57.895 0.00 0.00 0.00 3.82
2460 2908 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2461 2909 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
2462 2910 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2463 2911 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2464 2912 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2465 2913 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2466 2914 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2467 2915 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2468 2916 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2469 2917 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2470 2918 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2471 2919 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2472 2920 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2473 2921 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2474 2922 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2475 2923 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2476 2924 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2477 2925 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2478 2926 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2479 2927 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2480 2928 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2481 2929 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2482 2930 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2483 2931 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2484 2932 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2485 2933 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2486 2934 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2487 2935 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2488 2936 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2489 2937 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2490 2938 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2491 2939 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2492 2940 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2493 2941 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2494 2942 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2495 2943 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2496 2944 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2497 2945 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2498 2946 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2499 2947 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2500 2948 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2501 2949 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2502 2950 1.468127 ACACACACACACACACACATG 59.532 47.619 0.00 0.00 0.00 3.21
2503 2951 1.468127 CACACACACACACACACATGT 59.532 47.619 0.00 0.00 40.80 3.21
2504 2952 2.675348 CACACACACACACACACATGTA 59.325 45.455 0.00 0.00 36.72 2.29
2505 2953 2.675844 ACACACACACACACACATGTAC 59.324 45.455 0.00 0.00 36.72 2.90
2506 2954 2.675348 CACACACACACACACATGTACA 59.325 45.455 0.00 0.00 36.72 2.90
2507 2955 3.312146 CACACACACACACACATGTACAT 59.688 43.478 1.41 1.41 36.72 2.29
2508 2956 4.509600 CACACACACACACACATGTACATA 59.490 41.667 8.32 0.00 36.72 2.29
2509 2957 4.749598 ACACACACACACACATGTACATAG 59.250 41.667 8.32 6.97 36.72 2.23
2510 2958 4.749598 CACACACACACACATGTACATAGT 59.250 41.667 8.32 7.64 36.72 2.12
2511 2959 5.236263 CACACACACACACATGTACATAGTT 59.764 40.000 8.32 0.00 36.72 2.24
2512 2960 5.820423 ACACACACACACATGTACATAGTTT 59.180 36.000 8.32 0.89 36.72 2.66
2513 2961 6.987404 ACACACACACACATGTACATAGTTTA 59.013 34.615 8.32 0.00 36.72 2.01
2514 2962 7.659799 ACACACACACACATGTACATAGTTTAT 59.340 33.333 8.32 0.00 36.72 1.40
2515 2963 9.145865 CACACACACACATGTACATAGTTTATA 57.854 33.333 8.32 0.00 36.72 0.98
2516 2964 9.146984 ACACACACACATGTACATAGTTTATAC 57.853 33.333 8.32 0.00 36.72 1.47
2517 2965 9.145865 CACACACACATGTACATAGTTTATACA 57.854 33.333 8.32 0.00 36.72 2.29
2518 2966 9.713713 ACACACACATGTACATAGTTTATACAA 57.286 29.630 8.32 0.00 36.72 2.41
2519 2967 9.967245 CACACACATGTACATAGTTTATACAAC 57.033 33.333 8.32 0.00 36.72 3.32
2520 2968 9.713713 ACACACATGTACATAGTTTATACAACA 57.286 29.630 8.32 0.00 37.26 3.33
2539 2987 7.820044 ACAACATTTTTGTTACACGATTTGT 57.180 28.000 0.00 0.00 42.84 2.83
2540 2988 8.245701 ACAACATTTTTGTTACACGATTTGTT 57.754 26.923 0.00 0.00 39.91 2.83
2541 2989 8.713271 ACAACATTTTTGTTACACGATTTGTTT 58.287 25.926 0.00 0.00 39.91 2.83
2542 2990 9.535270 CAACATTTTTGTTACACGATTTGTTTT 57.465 25.926 0.00 0.00 39.91 2.43
2543 2991 9.748100 AACATTTTTGTTACACGATTTGTTTTC 57.252 25.926 0.00 0.00 39.91 2.29
2544 2992 9.145865 ACATTTTTGTTACACGATTTGTTTTCT 57.854 25.926 0.00 0.00 39.91 2.52
2545 2993 9.965748 CATTTTTGTTACACGATTTGTTTTCTT 57.034 25.926 0.00 0.00 39.91 2.52
2547 2995 8.744008 TTTTGTTACACGATTTGTTTTCTTCA 57.256 26.923 0.00 0.00 39.91 3.02
2548 2996 8.918961 TTTGTTACACGATTTGTTTTCTTCAT 57.081 26.923 0.00 0.00 39.91 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 8.643752 CACAATCATTTGTTTATTCCCGTTTAC 58.356 33.333 0.00 0.00 43.57 2.01
65 67 5.289193 CAGCACAATCATTTGTTTATTCCCG 59.711 40.000 0.00 0.00 43.57 5.14
104 106 2.430921 ACGAGTGAAAGCCGAGCG 60.431 61.111 0.00 0.00 0.00 5.03
108 110 1.970917 GCATGGACGAGTGAAAGCCG 61.971 60.000 0.00 0.00 0.00 5.52
167 169 0.107993 ATCACCACGAGAGGCACATG 60.108 55.000 0.00 0.00 0.00 3.21
208 210 3.080647 CCCAATAGAAGGCACGACC 57.919 57.895 0.00 0.00 39.61 4.79
278 280 7.961326 AGTTAACCCCGTTCTTAGATAACTA 57.039 36.000 0.88 0.00 32.32 2.24
289 291 4.136796 ACCTTAACAAGTTAACCCCGTTC 58.863 43.478 0.88 0.00 32.26 3.95
329 333 9.707957 TCCTTAGGCTTTGATCCAATTTATAAA 57.292 29.630 0.00 0.00 0.00 1.40
330 334 9.354673 CTCCTTAGGCTTTGATCCAATTTATAA 57.645 33.333 0.00 0.00 0.00 0.98
600 610 7.826690 ACCAAACAAATACTGTGGCTAAATAG 58.173 34.615 0.00 0.00 38.67 1.73
628 638 3.312146 GGTCCTTAGTACGAGTGCTAGAC 59.688 52.174 0.00 10.20 0.00 2.59
634 644 2.165167 TGGTGGTCCTTAGTACGAGTG 58.835 52.381 0.00 0.00 34.23 3.51
723 988 2.786578 TGACGCTGCAAAACGATTTTTC 59.213 40.909 10.07 0.00 32.27 2.29
771 1038 6.758593 TCTGCGTGTAGTACTAACAAAAAG 57.241 37.500 3.61 0.00 0.00 2.27
777 1044 6.013689 GCATTTTTCTGCGTGTAGTACTAAC 58.986 40.000 3.61 4.88 31.49 2.34
778 1045 6.160664 GCATTTTTCTGCGTGTAGTACTAA 57.839 37.500 3.61 0.00 31.49 2.24
779 1046 5.773239 GCATTTTTCTGCGTGTAGTACTA 57.227 39.130 0.00 0.00 31.49 1.82
780 1047 4.663636 GCATTTTTCTGCGTGTAGTACT 57.336 40.909 0.00 0.00 31.49 2.73
935 1331 0.685131 ATGGTGGATGCATGGGTGTG 60.685 55.000 2.46 0.00 0.00 3.82
939 1335 1.145531 TCCTAATGGTGGATGCATGGG 59.854 52.381 2.46 0.00 34.23 4.00
999 1400 1.331756 GTTATGAGTTGGCGAGCCATG 59.668 52.381 18.32 0.00 46.64 3.66
1017 1418 0.322906 GGGCTAGAGCTGCAAAGGTT 60.323 55.000 1.02 0.00 41.70 3.50
1410 1826 1.300620 CGGAGCCAAGACGTTGTCA 60.301 57.895 0.00 0.00 34.60 3.58
1477 1893 1.252215 TTCATCAGCACGTACCCCGA 61.252 55.000 0.00 0.00 40.70 5.14
1527 1946 1.341089 ACGTAGACATCCAGCTCCAGA 60.341 52.381 0.00 0.00 0.00 3.86
1536 1955 0.806102 ACGCATGCACGTAGACATCC 60.806 55.000 19.57 0.00 46.19 3.51
1568 1987 3.891400 CACATTGCATCCGCCGGG 61.891 66.667 1.90 0.00 37.32 5.73
1683 2102 9.095065 GCTGAAGCATCATCATTTTCTTTTATT 57.905 29.630 0.00 0.00 41.59 1.40
1706 2129 2.355009 GGCAAACAAGTGGCGCTG 60.355 61.111 7.64 0.00 34.03 5.18
1714 2137 4.999939 GCGCACCGGGCAAACAAG 63.000 66.667 6.32 0.00 45.17 3.16
1744 2167 1.112113 TCTCGGACAATAGACCAGGC 58.888 55.000 0.00 0.00 0.00 4.85
1753 2176 5.473162 TGTGAACATTTTCATCTCGGACAAT 59.527 36.000 0.00 0.00 43.72 2.71
1797 2220 3.239254 CGCGGCGAGTGTTCATATATAA 58.761 45.455 19.16 0.00 0.00 0.98
1811 2234 1.640210 AATGTATTTGTGCGCGGCGA 61.640 50.000 28.54 8.58 0.00 5.54
1812 2235 1.193665 GAATGTATTTGTGCGCGGCG 61.194 55.000 19.62 19.62 0.00 6.46
1836 2260 7.577807 GCTCAGTCTTTTGAAGGTACTCATAGA 60.578 40.741 0.00 0.00 38.49 1.98
1844 2268 4.632153 GTCTGCTCAGTCTTTTGAAGGTA 58.368 43.478 0.00 0.00 0.00 3.08
1850 2274 2.154854 TCCGTCTGCTCAGTCTTTTG 57.845 50.000 0.00 0.00 0.00 2.44
1861 2285 1.649171 CGCGTGATAATATCCGTCTGC 59.351 52.381 0.00 2.70 0.00 4.26
1863 2287 1.201647 CCCGCGTGATAATATCCGTCT 59.798 52.381 4.92 0.00 0.00 4.18
1867 2291 3.314541 AAGTCCCGCGTGATAATATCC 57.685 47.619 4.92 0.00 0.00 2.59
1870 2309 3.131577 ACAGAAAGTCCCGCGTGATAATA 59.868 43.478 4.92 0.00 0.00 0.98
1880 2319 1.270839 ACACCATCACAGAAAGTCCCG 60.271 52.381 0.00 0.00 0.00 5.14
1889 2328 4.478699 CATGCACTTTTACACCATCACAG 58.521 43.478 0.00 0.00 0.00 3.66
1902 2342 4.841422 AGATTGACTAGAGCATGCACTTT 58.159 39.130 22.83 10.53 0.00 2.66
1909 2349 9.771534 GGTAAAGATAAAGATTGACTAGAGCAT 57.228 33.333 0.00 0.00 0.00 3.79
1910 2350 8.982723 AGGTAAAGATAAAGATTGACTAGAGCA 58.017 33.333 0.00 0.00 0.00 4.26
1941 2381 4.978388 ACTATGAAAGCCTCCTCCCTTTAT 59.022 41.667 0.00 0.00 31.85 1.40
2119 2559 3.567164 GTGCAGGTTGGATTCCTCATATG 59.433 47.826 3.95 0.00 32.37 1.78
2165 2605 4.453136 GTCGACTGAGACCTAGACATATCC 59.547 50.000 8.70 0.00 35.22 2.59
2166 2606 5.178623 CAGTCGACTGAGACCTAGACATATC 59.821 48.000 36.73 0.00 46.59 1.63
2167 2607 5.060506 CAGTCGACTGAGACCTAGACATAT 58.939 45.833 36.73 0.00 46.59 1.78
2184 2625 1.337071 ACTTCGCAAAGTCTCAGTCGA 59.663 47.619 0.00 0.00 42.10 4.20
2185 2626 1.772182 ACTTCGCAAAGTCTCAGTCG 58.228 50.000 0.00 0.00 42.10 4.18
2200 2641 1.467713 CGTTAGCCCGACTGAGACTTC 60.468 57.143 0.00 0.00 0.00 3.01
2207 2648 1.513586 GACGACGTTAGCCCGACTG 60.514 63.158 0.13 0.00 0.00 3.51
2217 2658 0.038526 CAGCAAGTAGGGACGACGTT 60.039 55.000 0.13 0.00 39.49 3.99
2223 2664 2.563471 CTACGACAGCAAGTAGGGAC 57.437 55.000 0.00 0.00 37.32 4.46
2234 2675 0.529337 CCAGAGGCATGCTACGACAG 60.529 60.000 18.92 1.58 0.00 3.51
2259 2707 3.273080 GAACAAGCAAGGCCAGGCG 62.273 63.158 5.01 0.00 34.54 5.52
2266 2714 0.381801 ACAGCAACGAACAAGCAAGG 59.618 50.000 0.00 0.00 0.00 3.61
2278 2726 5.703130 AGGAAGACAGAGAAAATACAGCAAC 59.297 40.000 0.00 0.00 0.00 4.17
2286 2734 3.307059 CCACCGAGGAAGACAGAGAAAAT 60.307 47.826 0.00 0.00 41.22 1.82
2299 2747 3.923645 ACCCAGGTCCACCGAGGA 61.924 66.667 12.61 0.00 46.75 3.71
2310 2758 4.115199 GCAGTAGCCCCACCCAGG 62.115 72.222 0.00 0.00 33.58 4.45
2317 2765 2.512515 CGAGCAAGCAGTAGCCCC 60.513 66.667 0.00 0.00 43.56 5.80
2324 2772 1.153289 ATAGCCCACGAGCAAGCAG 60.153 57.895 0.00 0.00 34.23 4.24
2333 2781 1.086696 CACCAAGTTCATAGCCCACG 58.913 55.000 0.00 0.00 0.00 4.94
2335 2783 0.676466 CGCACCAAGTTCATAGCCCA 60.676 55.000 0.00 0.00 0.00 5.36
2337 2785 0.447801 CACGCACCAAGTTCATAGCC 59.552 55.000 0.00 0.00 0.00 3.93
2362 2810 5.163923 GGAAATTGTCCGTCGGTACTTTAAG 60.164 44.000 11.88 0.00 36.40 1.85
2393 2841 5.118729 TGACCTCTGTCCTTTGGTAAAAA 57.881 39.130 0.00 0.00 41.01 1.94
2394 2842 4.781775 TGACCTCTGTCCTTTGGTAAAA 57.218 40.909 0.00 0.00 41.01 1.52
2395 2843 4.080243 TGTTGACCTCTGTCCTTTGGTAAA 60.080 41.667 0.00 0.00 41.01 2.01
2396 2844 3.456644 TGTTGACCTCTGTCCTTTGGTAA 59.543 43.478 0.00 0.00 41.01 2.85
2397 2845 3.042682 TGTTGACCTCTGTCCTTTGGTA 58.957 45.455 0.00 0.00 41.01 3.25
2398 2846 1.843851 TGTTGACCTCTGTCCTTTGGT 59.156 47.619 0.00 0.00 41.01 3.67
2399 2847 2.222027 GTGTTGACCTCTGTCCTTTGG 58.778 52.381 0.00 0.00 41.01 3.28
2400 2848 2.614057 GTGTGTTGACCTCTGTCCTTTG 59.386 50.000 0.00 0.00 41.01 2.77
2401 2849 2.238646 TGTGTGTTGACCTCTGTCCTTT 59.761 45.455 0.00 0.00 41.01 3.11
2402 2850 1.837439 TGTGTGTTGACCTCTGTCCTT 59.163 47.619 0.00 0.00 41.01 3.36
2403 2851 1.139058 GTGTGTGTTGACCTCTGTCCT 59.861 52.381 0.00 0.00 41.01 3.85
2404 2852 1.134521 TGTGTGTGTTGACCTCTGTCC 60.135 52.381 0.00 0.00 41.01 4.02
2405 2853 1.933853 GTGTGTGTGTTGACCTCTGTC 59.066 52.381 0.00 0.00 42.12 3.51
2406 2854 1.277842 TGTGTGTGTGTTGACCTCTGT 59.722 47.619 0.00 0.00 0.00 3.41
2407 2855 1.665679 GTGTGTGTGTGTTGACCTCTG 59.334 52.381 0.00 0.00 0.00 3.35
2408 2856 1.277842 TGTGTGTGTGTGTTGACCTCT 59.722 47.619 0.00 0.00 0.00 3.69
2409 2857 1.396996 GTGTGTGTGTGTGTTGACCTC 59.603 52.381 0.00 0.00 0.00 3.85
2410 2858 1.271108 TGTGTGTGTGTGTGTTGACCT 60.271 47.619 0.00 0.00 0.00 3.85
2411 2859 1.135803 GTGTGTGTGTGTGTGTTGACC 60.136 52.381 0.00 0.00 0.00 4.02
2412 2860 1.533299 TGTGTGTGTGTGTGTGTTGAC 59.467 47.619 0.00 0.00 0.00 3.18
2413 2861 1.533299 GTGTGTGTGTGTGTGTGTTGA 59.467 47.619 0.00 0.00 0.00 3.18
2414 2862 1.724336 CGTGTGTGTGTGTGTGTGTTG 60.724 52.381 0.00 0.00 0.00 3.33
2415 2863 0.515127 CGTGTGTGTGTGTGTGTGTT 59.485 50.000 0.00 0.00 0.00 3.32
2416 2864 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
2417 2865 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2418 2866 2.735677 CGCGTGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
2419 2867 2.021243 CGCGTGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
2420 2868 3.860125 GCGCGTGTGTGTGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
2421 2869 4.918060 CGCGCGTGTGTGTGTGTG 62.918 66.667 24.19 0.00 0.00 3.82
2438 2886 4.250431 GTGTGTGTGTGTGGGCGC 62.250 66.667 0.00 0.00 0.00 6.53
2439 2887 2.821810 TGTGTGTGTGTGTGGGCG 60.822 61.111 0.00 0.00 0.00 6.13
2440 2888 2.043405 TGTGTGTGTGTGTGTGGGC 61.043 57.895 0.00 0.00 0.00 5.36
2441 2889 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
2442 2890 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2443 2891 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2444 2892 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2445 2893 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2446 2894 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2447 2895 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2448 2896 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2449 2897 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2450 2898 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2451 2899 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2452 2900 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2453 2901 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2454 2902 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2455 2903 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2456 2904 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2457 2905 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2458 2906 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2459 2907 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2460 2908 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2461 2909 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2462 2910 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2463 2911 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2464 2912 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2465 2913 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2466 2914 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2467 2915 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2468 2916 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2469 2917 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2470 2918 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2471 2919 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2472 2920 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2473 2921 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2474 2922 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2475 2923 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2476 2924 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2477 2925 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2478 2926 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2479 2927 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2480 2928 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2481 2929 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2482 2930 1.468127 CATGTGTGTGTGTGTGTGTGT 59.532 47.619 0.00 0.00 0.00 3.72
2483 2931 1.468127 ACATGTGTGTGTGTGTGTGTG 59.532 47.619 0.00 0.00 37.14 3.82
2484 2932 1.819928 ACATGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 37.14 3.72
2485 2933 2.675348 TGTACATGTGTGTGTGTGTGTG 59.325 45.455 9.11 0.00 39.39 3.82
2486 2934 2.979240 TGTACATGTGTGTGTGTGTGT 58.021 42.857 9.11 0.00 39.39 3.72
2487 2935 4.749598 ACTATGTACATGTGTGTGTGTGTG 59.250 41.667 18.81 0.00 39.39 3.82
2488 2936 4.956085 ACTATGTACATGTGTGTGTGTGT 58.044 39.130 18.81 0.00 39.39 3.72
2489 2937 5.922739 AACTATGTACATGTGTGTGTGTG 57.077 39.130 18.81 0.00 39.39 3.82
2490 2938 9.146984 GTATAAACTATGTACATGTGTGTGTGT 57.853 33.333 18.81 7.85 39.39 3.72
2491 2939 9.145865 TGTATAAACTATGTACATGTGTGTGTG 57.854 33.333 18.81 0.00 39.39 3.82
2492 2940 9.713713 TTGTATAAACTATGTACATGTGTGTGT 57.286 29.630 18.81 12.12 39.39 3.72
2493 2941 9.967245 GTTGTATAAACTATGTACATGTGTGTG 57.033 33.333 18.81 4.36 39.39 3.82
2494 2942 9.713713 TGTTGTATAAACTATGTACATGTGTGT 57.286 29.630 18.81 13.66 42.39 3.72
2513 2961 9.522804 ACAAATCGTGTAACAAAAATGTTGTAT 57.477 25.926 4.55 0.00 39.29 2.29
2514 2962 8.912787 ACAAATCGTGTAACAAAAATGTTGTA 57.087 26.923 4.55 0.00 39.29 2.41
2515 2963 7.820044 ACAAATCGTGTAACAAAAATGTTGT 57.180 28.000 4.55 0.00 39.29 3.32
2516 2964 9.535270 AAAACAAATCGTGTAACAAAAATGTTG 57.465 25.926 4.55 0.00 40.60 3.33
2517 2965 9.748100 GAAAACAAATCGTGTAACAAAAATGTT 57.252 25.926 0.00 0.00 40.60 2.71
2518 2966 9.145865 AGAAAACAAATCGTGTAACAAAAATGT 57.854 25.926 0.00 0.00 40.60 2.71
2519 2967 9.965748 AAGAAAACAAATCGTGTAACAAAAATG 57.034 25.926 0.00 0.00 40.60 2.32
2521 2969 9.193133 TGAAGAAAACAAATCGTGTAACAAAAA 57.807 25.926 0.00 0.00 40.60 1.94
2522 2970 8.744008 TGAAGAAAACAAATCGTGTAACAAAA 57.256 26.923 0.00 0.00 40.60 2.44
2523 2971 8.918961 ATGAAGAAAACAAATCGTGTAACAAA 57.081 26.923 0.00 0.00 40.60 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.