>input_sequence_76008
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----------------------------------------ATGGCTCGCCAACTCATAACCTTTGCAGCTCTAGCCCCT-
--CTACTCATGGCCATGGCTGT------CATCGTCTCCCCTGCCGCCTCTGCCTTCCGAGGCGTGGGCGCGCGAGAATCC
TACCACCTGCGCTTCTACATGCACGATTTCTCCAACGGCCCAAACGCCAGCGCCATCGTG------GTCGCCCACGGCAC
CGGCCCGCTTCTTGGAGGCTCCAAGGACAGGCGCTTTGGCGACGTGGTGGTCATGGACGACACCCTCACCGAAGGCCCTA
ACACGACGTCCAGGGCCCTCGGACGCGCCCAGGGGTTCTACATCGCGTCGTCCTCCATCAGCGGCGACCCCACGCTGCAC
ATCTCCATGGACCTGGTAGTCACCAGCGGGCCCTGCAGTGGGAGCACGCTTGCCGTCACGGGCCGTGACAACGTCTTGGC
TCCGGTGCGGGAGCTCCCGGTGGTCGGCGGCATGGGGAGATTCAGGATGGCATCGGGGTACGTGCTGATGAAGACGGTGA
AC---TGGCATGGGAACGACGTTCTTCTGGAGCTGGATGTCTACGTGCATGCGTGA------------------------
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>chr4B_1_TraesCS4B01G382800
GATGTCAGATATGTTTCTGATTTATATCAA-TTTATATTTTAGTGTGAATTAATTTCATATGTAAACGGGAATAAACAAA
TGATTGTGCTGCAGCACGAGTAGTTCGCTCGGCTTTCACTCGTCCATGCCCTGCATGGTGTGTGTCCTTCGACAACACCC
CTCATCTACATGTGCCTCTCGTGGTGATGATCATATGTCTGCTGCTAGAGGTCGTGCCTTCTATTGGGCGTCCATTTCTT
CTCTTCTTCTTTAACTTTGATATTTGTATGGTTTCGACCTAGTTATCTAAG-AACGGGGTTAACTTGTTAAGGTTTTTGA
TTCGGTTTTT-TTTTATAAATTGGATCAAAGCCTAAGGAGAACTCCCCCACCCCTATGAGTGATTCTCAAAGGAAAAAAG
---ATCCAAAAAGAGCTGTACCACGACGTACCATTGTATGT-GGTGTATCCCGGGGTTTGAAATAGTTCAGGCTAGCTAA
TGCATTGAAAAGGTTCTGGCCGGCTAATAACACCCACCAGACGAAACAAATTAACGATTTTAGTTATTTATTTTG--TTT
TATTATAGATTCCCTAGTTTCTTATTTAGTTTTTTTTTACGGAAGTTTCCTATTTAGCCACAGTATTTGTTTGGTTAGTC
TAGCACTC------------------------------------------------------------------------
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-----------------------GTACTAAGGACCACCATGTATCGAGAATTTTTTGCCTCTCGACTGTAGCTCTATATC
TATGGAATAAAACTCCTTTCACCATAAGAAAAATC-GTTTTGCAGCGTCACGTTATCGCCCAGTTCAGAAACATCT-CTT
TTTGTTAGTACTACACGC--------------------------------------------------------------
------------------------------------------------AGAAAAATGCGCTC------------------
TTATCTTCTGCCATGCATCGATCGCACTTGCAAAAGGTGAGCAGTGATCTAGGGAACACTGTTACTCTACTTTCGTGCAT
CCATCATCATTGTCATAACGACCACTTGCTGGA-GCTCGTGCTATTTAAGCACACCCATGCATCCACCATTAGGA-----
TTAGGTCCATCACCTTGGCATGCAAGATCGGTAAATCGACATGGCTCGCCAACTCATAACCTTTGCAGCTCTAGCCCCT-
--CTACTCATGGCCATGGCTGT------CATCGTCTCCCCTGCCGCCTCTGCCTTCCGAGGCGTGGGCGCGCGAGAATCC
TACCACCTGCGCTTCTACATGCACGATTTCTCCAACGGCCCAAACGCCAGCGCCATCGTG------GTCGCCCACGGCAC
CGGCCCGCTTCTTGGAGGCTCCAAGGACAGGCGCTTTGGCGACGTGGTGGTCATGGACGACACCCTCACCGAAGGCCCTA
ACACGACGTCCAGGGCCCTCGGACGCGCCCAGGGGTTCTACATCGCGTCGTCCTCCATCAGCGGCGACCCCACGCTGCAC
ATCTCCATGGACCTGGTAGTCACCAGCGGGCCCTGCAGTGGGAGCACGCTTGCCGTCACGGGCCGTGACAACGTCTTGGC
TCCGGTGCGGGAGCTCCCGGTGGTCGGCGGCATGGGGAGATTCAGGATGGCATCGGGGTACGTGCTGATGAAGACGGTGA
AC---TGGCATGGGAACGACGTTCTTCTGGAGCTGGATGTCTACGTGCATGCGTGAACATTATCGACCCGGCGGATGCAA
TGTGGACGCGTCCCATAATAACCAAGATAATTGGCGTGTTTGATATTGTAATATTTTGTCTCATCTTTTTCTCGTGTGAA
CGAATTTCGGATGCAAATTGAA----ATAAAAGAAAATGATGATGCTTCAGCGCCACTTGTTTGCCCGGTGCGCGCTCTC
ACTCTAGCCTGGTCTATTGTCCGAGATGAAAATGTTCACACATGCACGTGCACTCATTTTTATATATGAACACTCG-CCG
CGCACAAATACATTCTATTTCTATGAGTACCTTCAAAAGACTGAGCAGACG---------------GATATTATCACGCG
GGACTTTCTG-TGATGGTGTAAAAGTGCATGCTCTAGTCAATCTTTATCTTTACCTAATAATAAAGGGAGGAGGCTTTCA
TAGTTCTCCATATGGTATCCCCTTTATATTCATTGATTTTGTGATAACCATAAAGATTGACGGATGTGATTTAAAAGTAG
ATATATGTAACGTTACGTAAAATATAAAGTATGTACACATTGACACGTCTATAAAGAATCTCTTCTTTTTCTAGAAAGCA
TATGAGGAATCCAACCTGCACACAAACATATTAGTTCTAAAAAAGGA-TATGTCTAGGTCTCAGTCGACTGAGACTTTGC
GAAGTCTCAGTCGGGCTAACGTCGTCCCTACTTGCTGTCGTAGCATGCCTC-------TGGGCATACGCCTGGCCTTGCT
TGTTCGTTGCTGTATTTTCTCTGTCTTCCTCGGTGGACCTGGGTGGGGCTACTGCTTGCTCGTGGGCTATGAACTTGGTG
CGTGAGGTTCTTAAAGTACCGACGGACAATTTCCAAAACTTTTTTACCAAAGGACAGAGGTCAACACACACACACACACA
CGCGCGCGCCCACACACACACACACACACACACACACACACACACACACACACACACACACACACACATGTACATAGTTT
ATACAACATTTTTGTTACACGATTTGTTTTCTTCATAAAATAGTG
>chr7B_1
GATGTCAGATATGTTTCTGATTTATATCGATTTTATATTTTAGTGTGAATTAATTTCATATCTAAATGGGAATAAACAAA
TGATTCTGCTGCAGCACGAGTAGTTTGCTTGGCTTTCACTCGTCCATGCCCTGCATTGTGTGTGTCCTTCGACAACACCC
CTCGTCTATATGTGCCTCTCGTGGTGATGATCATATGTCTGTTGCTAG--GTCGTGCCTTCTCTTGGGCGTCCATTTCTT
CTCTTCTTCTTTAACTTTGATATTTGTATGCTTTCGACCCAGTTATCTAGAAAACGGGGTTAATTTGTTAAGGTTTTTGA
TCCGGTTTTT-T--TATAAATTGGATCAAAGCCTAAGGAGAACTCCCCCACCCCCATCAGTGATTCTCAAAGAAAAAAAG
---ATCCAAAAAGAGCTGTACCACGACGTACCATTGTATGTCGGTGTATCCCGGGGTTTGAAATAGTTCAGGCTAGCTAA
TGCATTGAAAAGGTTCTGG-CGGCTAATAACACCCACCAGACGAAACAAA----CGATTGTAGTTATTTTATTTTA-TTT
TATTATAAATTCCCTAGTTTCTTATTTAGTTTTTTA--ACGGAAGTTTCTTATTTAGCCACAGTATTTGTTTGGTTAATC
TAGTACTC------------------------------------------------------------------------
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-----------------------CTACTAAGGACCACCATGTATCGAGAATTGTTTGCCTCTCGACTGTAGCTCTATATC
TATGGAATAAAACTCTTTTCACCATAAAAAAAATC-GTTTTGCAGCGTCACGTTGTCGCCCAGTTCAGAAACATCT-TTT
TTTTAGTACTCCCTCCGTCCCAAAATTCGTGTCTTACATTTGTCTAAATACGGATGTATCAAGTCACATTTTAGTATTAG
ATACATCCGTATCTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGAGAAAAATGTGCTCCCTCGATTAATTAATTCA
TTATCTTCTGCCATGCATCGATCGCACTTGCAAAAGGTGAGCAGTGATCTAGGGAACACTGTTACTCTACTTTCGTGCAT
CAATCATCATTGTCATAACGACCACTTGCTGGA-GCTCATGCTATTTAAGGACATCCATGCATGCACCACTAG-------
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>chr5A_149
CGACAACCA-----------------------------------------------------------------------
-------------------------------------------------------------------------------C
CTCATCTATATGTGCCTCTCGTGGTGATGGTCATATGCGTGCTGCTAG--GTCGTGCCTTCTCTTGGGCATTCATTTCTT
CTCTTCTTCTTTAACTTTGATATTTGTATGGTTACGGCCCAGTTTTTTCATAAACGGGGTTAACTTGTTAAGGTTTTTGA
TTCGATTTTTCT--TATAAATTGGATCAAAGCCTAAGGAGAACTCCCCCACCCCTATCAGTGATTCTCAAAGAAAAAACA
AACATCCAAAAAGAGCTGTACTACTACGTGCCATTGTATGTCCGTGTATCCCCGTGTTTGAAATAGTTCAGGCAAGCTAA
TGCATTGAAATGGTTCTGGCCGGTTAATAAGACCCACCAGACGAAACAAATTAACGATGGTAGTTATTTTATTTTATTTT
TATTATAAATTCCCTAGTTTCTTATTTAGTTTTTTTTAG-GGAAGTTTCTTATTTAGCCACAGTATTTGTTTGGTCTATC
TAGTACTCCCTCCTTCCCAACATATAAGGCAAGCTTAACTTTGCACAGTCTTTGATGCATGACTTTGACCACTAATATAT
AATATCAAAGTAGTTGAATTGGACATGTATAAATGGCATAGTCATATTTTTCTTGCAAAATAATTTTATTTCATATATCG
CTATACTAATTTTATAGACATACAATAAGTAAAACTTATAGTCAAAGTTGTGCGACGAAGACTAGAAAAGTCAAACGGCG
TCTTATATTTCGGGAAAGAGGGAGTACTAAGAACCACCATGTATCGAGGATTTTTTTTGC-----------CTCTATATC
TATGGAATAAAACTCCTTTCACCTTAAAAAAAATTTGTTTTGCAGCATCACGTTATCGCCCAACTCAGAAACATCTTTTT
TTTTAGTAGTATACAGGC--------------------------------------------------------------
------------------------------------------------AGTAAAATGCGCTCCCTTGATTAATTCATTCA
TTATCTTCTGCCATGCATCGATCGCACTTGCAAAAGCTGAGCAGTGATCTAGCACTA----TTACTCTACTTTCGTGCAT
CCATCATCATTGTCATAACGACCACTTGCTGGA-GCTCGTGCTATTTAAGGACATCCATGCACC----------A-----
TTAGGTCCATCACCTTGGCATGCAAGATCGGTAAGTCGATATGGCTCGCCAACTCATCACCTTTGCAGCTCTAGCTCCT-
--CTACTCATGGCCATGGCTGTGGCTGTCATCGTCCCCCCTGCCGCCTGTGCCTTCCGGGGCGTGGGCGCGCGAGAATCC
TACCACCTGCGCTTCTACATGCACGATTTCTCCAACGGACCAAACGCCAGCGCCATCGTG------GTCGCCCACGGCAC
CGGCCCGCTTCTTGGAGGCTCCAGTGACCGGCGCTTTGGCGACGTGGTGGTCATGGACGACACCCTCACCGAAGGCCCTA
ACACGACGTCCAGGGCCCTCGGACGCGCCCAGGGGTTCTACATCGCGTCGTCCTCCATAAGCGGCGACCCCACGCTGCAC
ATCTCCATGGACCTGGTAGTCACCAGCGGGCCCTGCAGCGGGAGCATGCTCGCCGTCACGGGCCGCGACAACGTCTTGGC
GCCGGTGCGGGAGCTCCCGGTGGTCGGCGGTATGGGGAGATTCAGGATGGCAACGGGGTACGTGCTGATGAAGACGGTGA
AC---TGGCATGGGAACGACGTTCTCCTGGAGCTCGATGTCTACGTGCATGCGTGAACATTATCGA-CCGGCGGATGCAA
TGTGGACGCGTCCCATAATAACCAAGATAATTGGCGTGTTTGATATTGTAATATTTTGTCTCATCTTTTTCTCGTGTGAA
CGAATTTCGGATGCAAATTGAGATATATAAAAGAAAATGATGATGCTTGAGCGCCAGTTGTTTGCCCGGTGCGCGCTCTC
ACTCTACCCTGGTCTTTTGTCCGAGATGAAAATGTTCACACATGCACATGCACTCATTTCTATATATGAACACGTGCCCG
CGCACAAACACGTTCTATTCCTATGAGCACCTTTAAAAGACTGAACCGACAGATATTGCAATTGACGAAATTATCACGTG
GGACTTTTTGTTGATGGTGTAGAAGTGCT----------AATCTTTATCTTTACCTAATATTAAAGGGAGGAGGCTTTTA
TAGTTCTTCATATGGCATCCACCTTATATCTGTTGATTTTGTGATAACCATAAAGATTGACATTGA-GATTTAAAAGTAG
ATATATGTAACGTTACGTAAAATATAAAGTATGTACACATTGACACCTCTATGAAGAGCCTCTTCTTTTTCTAGAAAGTA
TATGAGGAATCCAACCTGCACATGATCATATTAGTTTTAAAAAAAAGGTATGTCTAGGTCTCAGAT-------ACTTTGC
AAAGTCTTAGTCGGGCTGACGTCATCCCTACTAGTTGTTGTAGCATGTTTTCCTTCTTTGGGCATAGGCCTGGGCTTGCT
TGTTCATTGCTGTCTTTTCTCTGTCTCCCTCGATGGATCTGGGTTGGGCTATTGCTTGCTGGCGAGCTATGAACTTGGTG
CGTGAGGTTGTTAAAGTAGCGAAGGAAAATTCCTAAAA------------------------------------------
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>chr4D_903
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----------------AACGACCCCTTGCTGGATGCTCATGCTATTTAAGGACGTCCTTGTATGCACTAGTATTACTTTG
TTAGGTCCGTCACC---GCATGCAAGATCGGTCGACCAATATGGCTCGCCGACTCG---CCTTTGCAGCTCTAGTCCCCC
TGCTACTCATGTTCATGGCCTT------CGTCGTCTCCCTTGCC---TGTGCCTTCGGCCCGCAGC---------AATCC
CACCACCTGCACTTGTACATGCACGACTTCGCCGCAGGCCCCAACGTCAGCACCATCCGTGTCGGTGTCGCCCATGACAC
CGGCCCGCTCCTCGGAGGCTCCAAGCTCTGGCGCTTTGGCGACATGGTGGTCATGGACGACGCACTCACCGAGGGCCCTG
GCATGGGGTCCAGGGCTCTCGGACGCGCCCAGGGGTTCTACATCGCGGCGTCATCCAAGGGCAGCGACCCCACGCTGCAC
ATGTCATTCGATCTGCTGCTCACCAGTGGGCCTTACAACGGGAGCACGCTTGCGGTCACGGGCCGCGACAACGTCATGGC
GCCGGTGCGGGAGCTCTCGGTGGTGGGCGGCATGGGGAGGTTCAGGATGGCAACCGGGTACGTGCTGATGCAGACCGTCG
AGTGGTGGCATGGCGAGTACGCTCTCCTAGAGCTCGATGTTTACGTGCATGCATGAACA---------------------
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>SNPs
----------------------------S--------------------------------S----S-------------
-----S-------------------S---S--------------------------S-----------------------
--------S---------------------------------------SS------------S-----------------
---------------------------------------S----------S-----------------------------
------------SS-------------------------------------------S--------------S-------
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-----------------------------------------------------------S---------SS---S-----
-------S-----------------------------S-----------S---------------------------S--
---S----------------------------------------------------------------------------
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---------------------------S-------------------------------------------------S--
---SSSSSSS----------------------------------------------------------------------
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--------------------------------------------------S---S--------------S---S------
---------------------------------------S-----------------S----------------------
------------------------------------------------S---------S---------------------
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----------------------------S---------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------S--------------------------S--------------
S---------------------------------------------------S---------------------------
-------------------------S--------S-------------------------------S-------------
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---------------------S--------------------------S-------S-----------------------
------S--------S-------------------------------S-----------S-------------SS-----
--------S--S-------S-------S-----S----------S-S---S-----------------S---------S-
-------S-------------S------SSSSSSSSSSS---------------------S-----------------S-
-------S-------S----S-S------SSS-----------------------------SSSSSS-------------
----------------------------------------------S-----S----SS-------------------S-
----------------------SS-S----------S-------SSS-----------------SSSSSSSSS-------
S------S---------S-----S--------S-S---S--------SS-S---------------S------S------
-----S-------S------------S-----S----S------S------S--------S-S-S---------------
---------S--------S---S---S----S-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_378
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--------------------------------------AGAACTCCCCCACCCCTATG----------------------
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>reverse_2658
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-----------------AACGTCGTCCCTACTTGCTG-------------------------------------------
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