Multiple sequence alignment - TraesCS4B01G355100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G355100 chr4B 100.000 3326 0 0 1 3326 646192970 646196295 0.000000e+00 6143.0
1 TraesCS4B01G355100 chr4D 85.065 1694 135 62 955 2608 502073442 502075057 0.000000e+00 1618.0
2 TraesCS4B01G355100 chr4D 89.087 504 25 10 2739 3223 502076445 502076937 1.710000e-167 599.0
3 TraesCS4B01G355100 chr4D 85.222 609 33 21 1 565 502072439 502073034 1.040000e-159 573.0
4 TraesCS4B01G355100 chr4D 79.778 361 50 19 566 908 502073080 502073435 1.190000e-59 241.0
5 TraesCS4B01G355100 chr4D 92.000 50 2 2 7 54 439701390 439701341 5.950000e-08 69.4
6 TraesCS4B01G355100 chr5A 82.002 1878 170 97 796 2611 685004818 685006589 0.000000e+00 1441.0
7 TraesCS4B01G355100 chr5A 89.068 558 31 13 2755 3292 685006765 685007312 0.000000e+00 665.0
8 TraesCS4B01G355100 chr5A 90.930 430 21 6 152 565 685003905 685004332 2.240000e-156 562.0
9 TraesCS4B01G355100 chr5A 79.630 432 49 24 583 983 685004381 685004804 1.180000e-69 274.0
10 TraesCS4B01G355100 chr5A 90.000 120 11 1 2623 2742 436331019 436331137 1.600000e-33 154.0
11 TraesCS4B01G355100 chr5B 91.358 243 17 3 955 1197 707212745 707212507 2.470000e-86 329.0
12 TraesCS4B01G355100 chr6A 90.756 119 11 0 2624 2742 447643846 447643728 3.430000e-35 159.0
13 TraesCS4B01G355100 chr6A 80.769 104 18 2 41 142 4713372 4713475 2.750000e-11 80.5
14 TraesCS4B01G355100 chr6A 86.765 68 5 4 1967 2031 616025945 616026011 4.600000e-09 73.1
15 TraesCS4B01G355100 chr5D 89.062 128 13 1 2623 2750 312934349 312934223 1.240000e-34 158.0
16 TraesCS4B01G355100 chr5D 88.889 126 13 1 2625 2750 138565671 138565547 1.600000e-33 154.0
17 TraesCS4B01G355100 chr5D 78.261 184 31 7 24 199 468356386 468356568 3.510000e-20 110.0
18 TraesCS4B01G355100 chr5D 83.333 108 17 1 41 147 371631337 371631230 7.590000e-17 99.0
19 TraesCS4B01G355100 chr4A 90.598 117 11 0 2625 2741 541364243 541364359 4.440000e-34 156.0
20 TraesCS4B01G355100 chr6B 89.831 118 12 0 2625 2742 438623455 438623338 5.750000e-33 152.0
21 TraesCS4B01G355100 chr6B 85.294 68 6 4 1967 2031 675805424 675805490 2.140000e-07 67.6
22 TraesCS4B01G355100 chr6B 100.000 29 0 0 161 189 686413295 686413267 2.000000e-03 54.7
23 TraesCS4B01G355100 chr2A 89.916 119 11 1 2624 2742 502330364 502330481 5.750000e-33 152.0
24 TraesCS4B01G355100 chr2D 89.256 121 12 1 2623 2743 179353764 179353883 2.070000e-32 150.0
25 TraesCS4B01G355100 chr1A 88.618 123 13 1 2620 2741 587847753 587847875 7.430000e-32 148.0
26 TraesCS4B01G355100 chr3B 86.316 95 13 0 41 135 362050100 362050006 1.630000e-18 104.0
27 TraesCS4B01G355100 chr3D 83.654 104 13 4 41 141 434891216 434891114 9.820000e-16 95.3
28 TraesCS4B01G355100 chr7A 82.243 107 19 0 41 147 25139766 25139872 3.530000e-15 93.5
29 TraesCS4B01G355100 chr7D 81.250 112 21 0 36 147 130767026 130766915 1.270000e-14 91.6
30 TraesCS4B01G355100 chr3A 80.769 104 20 0 44 147 644718913 644719016 7.650000e-12 82.4
31 TraesCS4B01G355100 chr1D 82.474 97 14 3 43 138 195005560 195005654 7.650000e-12 82.4
32 TraesCS4B01G355100 chr2B 86.765 68 5 4 1967 2031 61181950 61182016 4.600000e-09 73.1
33 TraesCS4B01G355100 chr7B 85.294 68 6 4 1967 2031 565763546 565763612 2.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G355100 chr4B 646192970 646196295 3325 False 6143.00 6143 100.0000 1 3326 1 chr4B.!!$F1 3325
1 TraesCS4B01G355100 chr4D 502072439 502076937 4498 False 757.75 1618 84.7880 1 3223 4 chr4D.!!$F1 3222
2 TraesCS4B01G355100 chr5A 685003905 685007312 3407 False 735.50 1441 85.4075 152 3292 4 chr5A.!!$F2 3140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 132 0.599558 CCGTTTGTGGGTCTCGTCTA 59.400 55.0 0.0 0.0 0.00 2.59 F
1204 1519 0.035458 CCTCAAGGTCAGTCCACCAC 59.965 60.0 0.0 0.0 39.16 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1669 0.035458 CCTTCCCAAGCAAGACGAGT 59.965 55.0 0.00 0.00 0.00 4.18 R
2725 3107 0.168788 TACGTACTCTTTCCGTGCGG 59.831 55.0 3.94 3.94 43.25 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 62 4.660938 GGCGCCCCATATCCACCC 62.661 72.222 18.11 0.00 0.00 4.61
82 85 4.478317 CCATATTTGGGCTAGATATGGGGA 59.522 45.833 24.42 0.00 44.56 4.81
92 95 2.113243 GATATGGGGAGTGCCGGTCC 62.113 65.000 1.90 1.28 33.83 4.46
129 132 0.599558 CCGTTTGTGGGTCTCGTCTA 59.400 55.000 0.00 0.00 0.00 2.59
132 135 0.606604 TTTGTGGGTCTCGTCTAGGC 59.393 55.000 0.00 0.00 0.00 3.93
157 182 0.620556 AACCATGACAAGAGCCCGAT 59.379 50.000 0.00 0.00 0.00 4.18
185 210 4.324991 GGGTTTGAGGCGTCCGGT 62.325 66.667 0.00 0.00 0.00 5.28
189 214 1.153127 TTTGAGGCGTCCGGTTGTT 60.153 52.632 0.00 0.00 0.00 2.83
196 221 1.852067 GCGTCCGGTTGTTGATGCTT 61.852 55.000 0.00 0.00 39.77 3.91
213 238 5.179368 TGATGCTTTAAGGTTTGAGAAGACG 59.821 40.000 0.00 0.00 0.00 4.18
223 248 4.502777 GGTTTGAGAAGACGTAGGGAAAGT 60.503 45.833 0.00 0.00 0.00 2.66
374 400 1.131693 CTAAAATCCAAACCCGTCCGC 59.868 52.381 0.00 0.00 0.00 5.54
430 456 2.764128 TCCCTCCACGGCTCATCC 60.764 66.667 0.00 0.00 0.00 3.51
450 476 2.422803 CCCCTCTCAGTCCACACAAAAA 60.423 50.000 0.00 0.00 0.00 1.94
451 477 3.490348 CCCTCTCAGTCCACACAAAAAT 58.510 45.455 0.00 0.00 0.00 1.82
452 478 3.503748 CCCTCTCAGTCCACACAAAAATC 59.496 47.826 0.00 0.00 0.00 2.17
454 480 3.138304 TCTCAGTCCACACAAAAATCGG 58.862 45.455 0.00 0.00 0.00 4.18
455 481 3.138304 CTCAGTCCACACAAAAATCGGA 58.862 45.455 0.00 0.00 0.00 4.55
456 482 3.750371 TCAGTCCACACAAAAATCGGAT 58.250 40.909 0.00 0.00 0.00 4.18
488 522 1.219393 GAGAAGCAGTTCCCCTCCG 59.781 63.158 0.00 0.00 32.48 4.63
490 524 3.249189 AAGCAGTTCCCCTCCGCA 61.249 61.111 0.00 0.00 0.00 5.69
491 525 3.259633 AAGCAGTTCCCCTCCGCAG 62.260 63.158 0.00 0.00 0.00 5.18
493 527 4.020617 CAGTTCCCCTCCGCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
494 528 3.710722 AGTTCCCCTCCGCAGCAG 61.711 66.667 0.00 0.00 0.00 4.24
497 531 4.777854 TCCCCTCCGCAGCAGCTA 62.778 66.667 0.00 0.00 39.10 3.32
498 532 4.232878 CCCCTCCGCAGCAGCTAG 62.233 72.222 0.00 0.00 39.10 3.42
538 582 1.532794 CTCCATCCTCCTCCCCTCG 60.533 68.421 0.00 0.00 0.00 4.63
555 599 1.592669 CGCCCAGCTCCGTCATTAG 60.593 63.158 0.00 0.00 0.00 1.73
565 609 3.495001 GCTCCGTCATTAGCAAGGTAATC 59.505 47.826 1.79 0.00 38.63 1.75
566 610 4.740934 GCTCCGTCATTAGCAAGGTAATCT 60.741 45.833 1.79 0.00 38.63 2.40
567 611 5.353394 TCCGTCATTAGCAAGGTAATCTT 57.647 39.130 1.79 0.00 35.79 2.40
568 612 5.357257 TCCGTCATTAGCAAGGTAATCTTC 58.643 41.667 1.79 0.00 32.41 2.87
569 613 4.209288 CCGTCATTAGCAAGGTAATCTTCG 59.791 45.833 1.79 7.09 32.41 3.79
570 614 4.209288 CGTCATTAGCAAGGTAATCTTCGG 59.791 45.833 1.79 0.00 32.41 4.30
571 615 4.024809 GTCATTAGCAAGGTAATCTTCGGC 60.025 45.833 1.79 0.00 32.41 5.54
572 616 3.906720 TTAGCAAGGTAATCTTCGGCT 57.093 42.857 0.00 0.00 38.05 5.52
606 695 1.805254 CTTGTGTAGCCATGCCTGC 59.195 57.895 0.00 0.00 0.00 4.85
612 701 3.709348 TAGCCATGCCTGCTGCCTG 62.709 63.158 5.32 0.00 39.91 4.85
618 707 1.381928 ATGCCTGCTGCCTGATTTCG 61.382 55.000 0.00 0.00 40.16 3.46
621 710 1.293924 CCTGCTGCCTGATTTCGTAG 58.706 55.000 0.00 0.00 0.00 3.51
633 722 5.755375 CCTGATTTCGTAGTGATGCAGTATT 59.245 40.000 0.00 0.00 0.00 1.89
664 753 1.544093 CCTGAGCTGGCTGTTTCAGAA 60.544 52.381 20.86 0.00 39.46 3.02
667 756 4.005650 CTGAGCTGGCTGTTTCAGAATTA 58.994 43.478 16.95 0.00 39.46 1.40
672 761 4.578105 GCTGGCTGTTTCAGAATTATAGCT 59.422 41.667 0.00 0.00 34.36 3.32
673 762 5.067023 GCTGGCTGTTTCAGAATTATAGCTT 59.933 40.000 0.00 0.00 34.36 3.74
674 763 6.260936 GCTGGCTGTTTCAGAATTATAGCTTA 59.739 38.462 0.00 0.00 34.36 3.09
675 764 7.519649 GCTGGCTGTTTCAGAATTATAGCTTAG 60.520 40.741 0.00 4.72 34.36 2.18
676 765 6.260936 TGGCTGTTTCAGAATTATAGCTTAGC 59.739 38.462 0.00 0.00 32.44 3.09
678 767 6.484977 GCTGTTTCAGAATTATAGCTTAGCCT 59.515 38.462 0.00 0.00 32.44 4.58
681 770 7.928706 TGTTTCAGAATTATAGCTTAGCCTCTC 59.071 37.037 0.00 0.00 0.00 3.20
707 796 3.699894 CCGGCCTGCTCACTCACT 61.700 66.667 0.00 0.00 0.00 3.41
756 848 4.020928 TCGAGAAATTACACCTACTTGCCA 60.021 41.667 0.00 0.00 0.00 4.92
758 850 5.163854 CGAGAAATTACACCTACTTGCCAAG 60.164 44.000 2.11 2.11 0.00 3.61
766 858 4.520492 ACACCTACTTGCCAAGAGAAATTG 59.480 41.667 12.25 3.14 0.00 2.32
773 865 2.749076 TGCCAAGAGAAATTGTCGATGG 59.251 45.455 11.64 11.64 33.63 3.51
777 869 4.572389 CCAAGAGAAATTGTCGATGGTAGG 59.428 45.833 8.93 0.00 0.00 3.18
779 871 5.269505 AGAGAAATTGTCGATGGTAGGAG 57.730 43.478 0.00 0.00 0.00 3.69
780 872 4.712337 AGAGAAATTGTCGATGGTAGGAGT 59.288 41.667 0.00 0.00 0.00 3.85
783 875 4.939052 AATTGTCGATGGTAGGAGTAGG 57.061 45.455 0.00 0.00 0.00 3.18
784 876 3.657398 TTGTCGATGGTAGGAGTAGGA 57.343 47.619 0.00 0.00 0.00 2.94
797 895 6.949463 GGTAGGAGTAGGAGATTATAAGCTGT 59.051 42.308 8.21 0.00 0.00 4.40
800 898 5.929415 GGAGTAGGAGATTATAAGCTGTTGC 59.071 44.000 8.21 0.00 40.05 4.17
816 914 4.404654 GCCTGCTTCGGCGTTTGG 62.405 66.667 6.85 4.86 45.37 3.28
817 915 2.668212 CCTGCTTCGGCGTTTGGA 60.668 61.111 6.85 0.00 45.37 3.53
818 916 2.680913 CCTGCTTCGGCGTTTGGAG 61.681 63.158 6.85 8.78 45.37 3.86
837 935 6.135290 TGGAGTTCTGAATTTTGTTGTCAG 57.865 37.500 0.00 0.00 40.15 3.51
838 936 4.978580 GGAGTTCTGAATTTTGTTGTCAGC 59.021 41.667 0.00 0.00 38.92 4.26
841 939 2.053627 CTGAATTTTGTTGTCAGCCGC 58.946 47.619 0.00 0.00 32.96 6.53
842 940 1.052287 GAATTTTGTTGTCAGCCGCG 58.948 50.000 0.00 0.00 0.00 6.46
863 972 3.799420 CGGTAGAAGATTGTAAGCTCTGC 59.201 47.826 0.00 0.00 0.00 4.26
884 1196 3.997021 GCTCTGGTCTTCTGAATTTCGAA 59.003 43.478 0.00 0.00 0.00 3.71
908 1220 3.507622 TGCTTCAGATCGAGTTCAGAAGA 59.492 43.478 19.54 7.06 40.02 2.87
909 1221 4.104776 GCTTCAGATCGAGTTCAGAAGAG 58.895 47.826 19.54 2.03 40.02 2.85
910 1222 4.671377 CTTCAGATCGAGTTCAGAAGAGG 58.329 47.826 13.16 0.00 40.02 3.69
913 1225 4.524714 TCAGATCGAGTTCAGAAGAGGTTT 59.475 41.667 0.00 0.00 0.00 3.27
915 1227 4.524714 AGATCGAGTTCAGAAGAGGTTTCA 59.475 41.667 0.00 0.00 0.00 2.69
917 1229 3.383505 TCGAGTTCAGAAGAGGTTTCACA 59.616 43.478 0.00 0.00 0.00 3.58
918 1230 3.491267 CGAGTTCAGAAGAGGTTTCACAC 59.509 47.826 0.00 0.00 0.00 3.82
919 1231 3.458189 AGTTCAGAAGAGGTTTCACACG 58.542 45.455 0.00 0.00 0.00 4.49
920 1232 3.118738 AGTTCAGAAGAGGTTTCACACGT 60.119 43.478 0.00 0.00 0.00 4.49
922 1234 4.238761 TCAGAAGAGGTTTCACACGTAG 57.761 45.455 0.00 0.00 0.00 3.51
925 1237 5.048921 TCAGAAGAGGTTTCACACGTAGTAG 60.049 44.000 0.00 0.00 41.61 2.57
927 1239 6.000219 AGAAGAGGTTTCACACGTAGTAGTA 59.000 40.000 0.00 0.00 41.61 1.82
928 1240 5.619625 AGAGGTTTCACACGTAGTAGTAC 57.380 43.478 0.00 0.00 41.61 2.73
929 1241 5.312079 AGAGGTTTCACACGTAGTAGTACT 58.688 41.667 8.14 8.14 41.61 2.73
932 1244 6.467677 AGGTTTCACACGTAGTAGTACTAGA 58.532 40.000 10.38 1.59 41.61 2.43
933 1245 6.936900 AGGTTTCACACGTAGTAGTACTAGAA 59.063 38.462 10.38 7.42 41.61 2.10
934 1246 7.118971 AGGTTTCACACGTAGTAGTACTAGAAG 59.881 40.741 10.38 7.82 41.61 2.85
935 1247 7.118390 GGTTTCACACGTAGTAGTACTAGAAGA 59.882 40.741 10.38 2.76 41.61 2.87
936 1248 7.588143 TTCACACGTAGTAGTACTAGAAGAC 57.412 40.000 10.38 0.40 41.61 3.01
937 1249 6.929625 TCACACGTAGTAGTACTAGAAGACT 58.070 40.000 10.38 1.44 41.61 3.24
938 1250 6.810676 TCACACGTAGTAGTACTAGAAGACTG 59.189 42.308 10.38 4.74 41.61 3.51
939 1251 5.580297 ACACGTAGTAGTACTAGAAGACTGC 59.420 44.000 10.38 1.87 41.61 4.40
940 1252 5.006552 CACGTAGTAGTACTAGAAGACTGCC 59.993 48.000 10.38 0.00 41.61 4.85
941 1253 5.114780 CGTAGTAGTACTAGAAGACTGCCA 58.885 45.833 10.38 0.00 30.12 4.92
942 1254 5.759273 CGTAGTAGTACTAGAAGACTGCCAT 59.241 44.000 10.38 0.00 30.12 4.40
943 1255 6.292973 CGTAGTAGTACTAGAAGACTGCCATG 60.293 46.154 10.38 0.00 30.12 3.66
944 1256 5.756918 AGTAGTACTAGAAGACTGCCATGA 58.243 41.667 1.87 0.00 0.00 3.07
947 1259 6.360370 AGTACTAGAAGACTGCCATGAAAA 57.640 37.500 0.00 0.00 0.00 2.29
948 1260 6.951971 AGTACTAGAAGACTGCCATGAAAAT 58.048 36.000 0.00 0.00 0.00 1.82
949 1261 7.044798 AGTACTAGAAGACTGCCATGAAAATC 58.955 38.462 0.00 0.00 0.00 2.17
951 1263 5.879223 ACTAGAAGACTGCCATGAAAATCTG 59.121 40.000 0.00 0.00 0.00 2.90
952 1264 4.015084 AGAAGACTGCCATGAAAATCTGG 58.985 43.478 0.00 0.00 35.53 3.86
953 1265 3.446442 AGACTGCCATGAAAATCTGGT 57.554 42.857 0.00 0.00 34.86 4.00
960 1272 5.867330 TGCCATGAAAATCTGGTTGAATTT 58.133 33.333 0.00 0.00 34.86 1.82
975 1290 7.378966 TGGTTGAATTTCGTGCCATTAATTTA 58.621 30.769 3.32 0.00 0.00 1.40
976 1291 7.329717 TGGTTGAATTTCGTGCCATTAATTTAC 59.670 33.333 3.32 0.00 0.00 2.01
983 1298 5.704888 TCGTGCCATTAATTTACAAGTTGG 58.295 37.500 7.96 0.00 0.00 3.77
1200 1515 3.073228 CCTCCTCAAGGTCAGTCCA 57.927 57.895 0.00 0.00 40.67 4.02
1203 1518 0.105194 TCCTCAAGGTCAGTCCACCA 60.105 55.000 0.00 0.00 39.16 4.17
1204 1519 0.035458 CCTCAAGGTCAGTCCACCAC 59.965 60.000 0.00 0.00 39.16 4.16
1206 1521 0.399949 TCAAGGTCAGTCCACCACCT 60.400 55.000 0.00 0.00 42.72 4.00
1207 1522 2.945718 AAGGTCAGTCCACCACCTT 58.054 52.632 5.26 5.26 44.29 3.50
1208 1523 0.474184 AAGGTCAGTCCACCACCTTG 59.526 55.000 9.10 0.00 46.73 3.61
1209 1524 1.073199 GGTCAGTCCACCACCTTGG 59.927 63.158 0.00 0.00 45.02 3.61
1244 1563 1.222936 GCTCCATGTAGGCTGCAGT 59.777 57.895 16.64 0.00 36.83 4.40
1270 1589 2.928801 AAATTGGTTTTGGCCCTGAC 57.071 45.000 0.00 0.00 0.00 3.51
1284 1603 0.385348 CCTGACTCGATCGATCTGCG 60.385 60.000 19.78 9.07 42.69 5.18
1353 1672 1.079438 AGGGACCCCTCTCACACTC 59.921 63.158 7.00 0.00 44.43 3.51
1372 1691 1.275291 TCGTCTTGCTTGGGAAGGTAG 59.725 52.381 0.00 0.00 0.00 3.18
1373 1692 1.676014 CGTCTTGCTTGGGAAGGTAGG 60.676 57.143 0.00 0.00 0.00 3.18
1374 1693 1.351350 GTCTTGCTTGGGAAGGTAGGT 59.649 52.381 0.00 0.00 0.00 3.08
1375 1694 2.570302 GTCTTGCTTGGGAAGGTAGGTA 59.430 50.000 0.00 0.00 0.00 3.08
1382 1701 4.654724 GCTTGGGAAGGTAGGTACTCTATT 59.345 45.833 0.00 0.00 41.75 1.73
1384 1703 5.476950 TGGGAAGGTAGGTACTCTATTCA 57.523 43.478 0.00 0.00 41.75 2.57
1387 1706 6.906901 TGGGAAGGTAGGTACTCTATTCATTT 59.093 38.462 0.00 0.00 41.75 2.32
1415 1734 9.398538 AGTACCTGTGTTAATTTTTCACTAACA 57.601 29.630 0.00 0.00 34.10 2.41
1418 1737 8.962679 ACCTGTGTTAATTTTTCACTAACAAGA 58.037 29.630 0.00 0.00 37.30 3.02
1419 1738 9.796120 CCTGTGTTAATTTTTCACTAACAAGAA 57.204 29.630 0.00 0.00 37.30 2.52
1424 1743 9.037737 GTTAATTTTTCACTAACAAGAAACCCC 57.962 33.333 0.00 0.00 33.82 4.95
1432 1751 6.059484 CACTAACAAGAAACCCCTTTGAGTA 58.941 40.000 0.00 0.00 0.00 2.59
1464 1783 7.263496 TCAGAATGATATTCTCACTGTCTGTG 58.737 38.462 3.55 3.55 42.56 3.66
1465 1784 7.263496 CAGAATGATATTCTCACTGTCTGTGA 58.737 38.462 11.57 11.57 46.80 3.58
1474 1805 1.407936 ACTGTCTGTGACTGCAGTCT 58.592 50.000 38.81 19.54 44.99 3.24
1534 1865 4.023980 AGTTCGTGTGGATAGGAAGATCA 58.976 43.478 0.00 0.00 0.00 2.92
1540 1871 5.087323 GTGTGGATAGGAAGATCAGGGATA 58.913 45.833 0.00 0.00 0.00 2.59
1550 1881 5.280215 GGAAGATCAGGGATATACCAGGTTG 60.280 48.000 6.78 0.00 41.20 3.77
1551 1882 4.171234 AGATCAGGGATATACCAGGTTGG 58.829 47.826 6.78 0.00 45.02 3.77
1567 1898 1.136057 GTTGGTTCGTTGCCGAGATTC 60.136 52.381 0.00 0.00 45.24 2.52
1600 1932 3.010138 CCCTCTAAAATGGTCCACTCCAA 59.990 47.826 0.00 0.00 41.09 3.53
1601 1933 4.010349 CCTCTAAAATGGTCCACTCCAAC 58.990 47.826 0.00 0.00 41.09 3.77
1602 1934 3.670625 TCTAAAATGGTCCACTCCAACG 58.329 45.455 0.00 0.00 41.09 4.10
1603 1935 2.649531 AAAATGGTCCACTCCAACGA 57.350 45.000 0.00 0.00 41.09 3.85
1604 1936 1.892209 AAATGGTCCACTCCAACGAC 58.108 50.000 0.00 0.00 41.09 4.34
1606 1938 1.933021 ATGGTCCACTCCAACGACTA 58.067 50.000 0.00 0.00 41.09 2.59
1607 1939 1.933021 TGGTCCACTCCAACGACTAT 58.067 50.000 0.00 0.00 34.24 2.12
1608 1940 3.090210 TGGTCCACTCCAACGACTATA 57.910 47.619 0.00 0.00 34.24 1.31
1616 1956 5.983720 CCACTCCAACGACTATAGTAATTGG 59.016 44.000 27.42 27.42 41.20 3.16
1624 1964 7.998753 ACGACTATAGTAATTGGTTAGCAAC 57.001 36.000 5.09 0.00 0.00 4.17
1625 1965 7.779073 ACGACTATAGTAATTGGTTAGCAACT 58.221 34.615 5.09 0.00 0.00 3.16
1632 1972 7.341445 AGTAATTGGTTAGCAACTTGTGAAA 57.659 32.000 0.00 0.00 0.00 2.69
1633 1973 7.951591 AGTAATTGGTTAGCAACTTGTGAAAT 58.048 30.769 0.00 0.00 0.00 2.17
1634 1974 7.867403 AGTAATTGGTTAGCAACTTGTGAAATG 59.133 33.333 0.00 0.00 0.00 2.32
1635 1975 5.590530 TTGGTTAGCAACTTGTGAAATGT 57.409 34.783 0.00 0.00 0.00 2.71
1636 1976 6.701145 TTGGTTAGCAACTTGTGAAATGTA 57.299 33.333 0.00 0.00 0.00 2.29
1637 1977 6.701145 TGGTTAGCAACTTGTGAAATGTAA 57.299 33.333 0.00 0.00 0.00 2.41
1660 2002 2.309613 TGAATTTCTGCTGTTGCTGGT 58.690 42.857 0.00 0.00 40.48 4.00
1661 2003 3.485394 TGAATTTCTGCTGTTGCTGGTA 58.515 40.909 0.00 0.00 40.48 3.25
1662 2004 4.081406 TGAATTTCTGCTGTTGCTGGTAT 58.919 39.130 0.00 0.00 40.48 2.73
1663 2005 5.252547 TGAATTTCTGCTGTTGCTGGTATA 58.747 37.500 0.00 0.00 40.48 1.47
1664 2006 5.887598 TGAATTTCTGCTGTTGCTGGTATAT 59.112 36.000 0.00 0.00 40.48 0.86
1665 2007 7.053498 TGAATTTCTGCTGTTGCTGGTATATA 58.947 34.615 0.00 0.00 40.48 0.86
1666 2008 7.720957 TGAATTTCTGCTGTTGCTGGTATATAT 59.279 33.333 0.00 0.00 40.48 0.86
1667 2009 9.219603 GAATTTCTGCTGTTGCTGGTATATATA 57.780 33.333 0.00 0.00 40.48 0.86
1668 2010 9.745018 AATTTCTGCTGTTGCTGGTATATATAT 57.255 29.630 0.00 0.00 40.48 0.86
1748 2092 0.673022 CCTCCTCTGTCTGTGCAAGC 60.673 60.000 0.00 0.00 0.00 4.01
1770 2114 1.946745 AGTCGAGGTACGTACTAGGC 58.053 55.000 24.07 16.50 43.13 3.93
1772 2116 1.328986 GTCGAGGTACGTACTAGGCAC 59.671 57.143 24.07 11.48 43.13 5.01
1773 2117 1.066215 TCGAGGTACGTACTAGGCACA 60.066 52.381 24.07 1.07 43.13 4.57
1775 2119 2.357009 CGAGGTACGTACTAGGCACAAT 59.643 50.000 24.07 1.08 37.22 2.71
1778 2122 4.530875 AGGTACGTACTAGGCACAATAGT 58.469 43.478 24.07 0.00 37.29 2.12
1803 2147 7.256756 GTTTCATCTCATGGAAACTCCTATG 57.743 40.000 14.44 0.00 45.78 2.23
1807 2151 8.676397 TCATCTCATGGAAACTCCTATGATAT 57.324 34.615 0.00 5.12 37.46 1.63
1808 2152 8.537858 TCATCTCATGGAAACTCCTATGATATG 58.462 37.037 16.68 16.68 38.36 1.78
1809 2153 7.862274 TCTCATGGAAACTCCTATGATATGT 57.138 36.000 0.00 0.00 37.46 2.29
1811 2155 7.009179 TCATGGAAACTCCTATGATATGTCC 57.991 40.000 0.00 0.00 37.46 4.02
1822 2183 7.187676 TCCTATGATATGTCCATGACTGATCT 58.812 38.462 0.00 0.00 33.15 2.75
1835 2196 4.836825 TGACTGATCTTTTGAGTGGGATC 58.163 43.478 0.00 0.00 36.21 3.36
1845 2208 2.825836 GTGGGATCGCAGCTTGGG 60.826 66.667 13.49 0.00 0.00 4.12
1863 2226 0.316841 GGGAGCTCAAGAGGCTATCG 59.683 60.000 17.19 0.00 40.40 2.92
1939 2302 6.261381 GGTACGGTATCATTTTAAATCTGCCA 59.739 38.462 0.00 0.00 0.00 4.92
1946 2309 2.570415 TTTAAATCTGCCACCCACGA 57.430 45.000 0.00 0.00 0.00 4.35
1948 2311 2.107950 TAAATCTGCCACCCACGAAG 57.892 50.000 0.00 0.00 0.00 3.79
1949 2312 0.400213 AAATCTGCCACCCACGAAGA 59.600 50.000 0.00 0.00 0.00 2.87
1950 2313 0.620556 AATCTGCCACCCACGAAGAT 59.379 50.000 0.00 0.00 0.00 2.40
1951 2314 0.107508 ATCTGCCACCCACGAAGATG 60.108 55.000 0.00 0.00 0.00 2.90
1952 2315 1.003355 CTGCCACCCACGAAGATGT 60.003 57.895 0.00 0.00 0.00 3.06
1953 2316 0.249120 CTGCCACCCACGAAGATGTA 59.751 55.000 0.00 0.00 0.00 2.29
1956 2319 2.290641 TGCCACCCACGAAGATGTATTT 60.291 45.455 0.00 0.00 0.00 1.40
1958 2321 3.942748 GCCACCCACGAAGATGTATTTTA 59.057 43.478 0.00 0.00 0.00 1.52
1994 2362 2.291465 TGTGCTGTGCTTTGTGATCTTC 59.709 45.455 0.00 0.00 0.00 2.87
1997 2365 2.810274 GCTGTGCTTTGTGATCTTCTCA 59.190 45.455 0.00 0.00 0.00 3.27
2187 2555 4.988029 CTGCTACCAGGTATACTCCTACT 58.012 47.826 0.00 0.00 35.87 2.57
2201 2569 8.954350 GTATACTCCTACTAAACTTCACTGACA 58.046 37.037 0.00 0.00 0.00 3.58
2204 2572 6.985059 ACTCCTACTAAACTTCACTGACAAAC 59.015 38.462 0.00 0.00 0.00 2.93
2211 2579 4.701956 ACTTCACTGACAAACAAACCTG 57.298 40.909 0.00 0.00 0.00 4.00
2212 2580 3.119495 ACTTCACTGACAAACAAACCTGC 60.119 43.478 0.00 0.00 0.00 4.85
2213 2581 2.441410 TCACTGACAAACAAACCTGCA 58.559 42.857 0.00 0.00 0.00 4.41
2216 2585 3.552699 CACTGACAAACAAACCTGCATTG 59.447 43.478 0.00 0.00 0.00 2.82
2221 2590 0.681175 AACAAACCTGCATTGGCTCC 59.319 50.000 3.73 0.00 41.91 4.70
2222 2591 1.213537 CAAACCTGCATTGGCTCCG 59.786 57.895 0.00 0.00 41.91 4.63
2225 2594 0.827507 AACCTGCATTGGCTCCGTTT 60.828 50.000 0.00 0.00 41.91 3.60
2233 2602 2.861462 TTGGCTCCGTTTTGTTCTTG 57.139 45.000 0.00 0.00 0.00 3.02
2238 2607 2.096819 GCTCCGTTTTGTTCTTGTGACA 59.903 45.455 0.00 0.00 0.00 3.58
2240 2609 3.340034 TCCGTTTTGTTCTTGTGACAGT 58.660 40.909 0.00 0.00 0.00 3.55
2249 2618 6.122850 TGTTCTTGTGACAGTTCTGAATTG 57.877 37.500 10.87 10.87 0.00 2.32
2253 2622 8.345565 GTTCTTGTGACAGTTCTGAATTGTATT 58.654 33.333 17.02 0.00 30.93 1.89
2255 2624 6.801539 TGTGACAGTTCTGAATTGTATTCC 57.198 37.500 17.02 6.94 30.93 3.01
2256 2625 6.295249 TGTGACAGTTCTGAATTGTATTCCA 58.705 36.000 17.02 9.17 30.93 3.53
2257 2626 6.942005 TGTGACAGTTCTGAATTGTATTCCAT 59.058 34.615 17.02 0.00 30.93 3.41
2258 2627 7.119699 TGTGACAGTTCTGAATTGTATTCCATC 59.880 37.037 17.02 5.40 30.93 3.51
2259 2628 6.599244 TGACAGTTCTGAATTGTATTCCATCC 59.401 38.462 17.02 4.78 30.93 3.51
2260 2629 5.888161 ACAGTTCTGAATTGTATTCCATCCC 59.112 40.000 15.74 0.00 28.76 3.85
2261 2630 5.887598 CAGTTCTGAATTGTATTCCATCCCA 59.112 40.000 4.88 0.00 0.00 4.37
2262 2631 6.548622 CAGTTCTGAATTGTATTCCATCCCAT 59.451 38.462 4.88 0.00 0.00 4.00
2263 2632 6.548622 AGTTCTGAATTGTATTCCATCCCATG 59.451 38.462 0.00 0.00 0.00 3.66
2264 2633 4.828939 TCTGAATTGTATTCCATCCCATGC 59.171 41.667 0.00 0.00 0.00 4.06
2265 2634 4.806892 TGAATTGTATTCCATCCCATGCT 58.193 39.130 0.00 0.00 0.00 3.79
2266 2635 4.828939 TGAATTGTATTCCATCCCATGCTC 59.171 41.667 0.00 0.00 0.00 4.26
2267 2636 4.736611 ATTGTATTCCATCCCATGCTCT 57.263 40.909 0.00 0.00 0.00 4.09
2268 2637 3.497103 TGTATTCCATCCCATGCTCTG 57.503 47.619 0.00 0.00 0.00 3.35
2269 2638 2.779430 TGTATTCCATCCCATGCTCTGT 59.221 45.455 0.00 0.00 0.00 3.41
2270 2639 3.202818 TGTATTCCATCCCATGCTCTGTT 59.797 43.478 0.00 0.00 0.00 3.16
2277 2646 2.238521 TCCCATGCTCTGTTTGTTTCC 58.761 47.619 0.00 0.00 0.00 3.13
2295 2664 1.674057 CCTTCAGCAACTCCCGTCT 59.326 57.895 0.00 0.00 0.00 4.18
2338 2707 2.202610 CGTGAGCAATCGCGAGGA 60.203 61.111 16.66 0.00 45.27 3.71
2350 2719 2.879462 CGAGGAACGCTACACCGC 60.879 66.667 0.00 0.00 34.51 5.68
2351 2720 2.572284 GAGGAACGCTACACCGCT 59.428 61.111 0.00 0.00 0.00 5.52
2354 2727 1.805945 GGAACGCTACACCGCTCTG 60.806 63.158 0.00 0.00 0.00 3.35
2355 2728 2.432628 AACGCTACACCGCTCTGC 60.433 61.111 0.00 0.00 0.00 4.26
2360 2733 1.153745 CTACACCGCTCTGCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
2372 2745 2.997315 CTCCACAGTCCGCCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
2378 2751 1.066143 CACAGTCCGCCTCCACTTAAT 60.066 52.381 0.00 0.00 0.00 1.40
2380 2753 2.009774 CAGTCCGCCTCCACTTAATTG 58.990 52.381 0.00 0.00 0.00 2.32
2381 2754 1.065418 AGTCCGCCTCCACTTAATTGG 60.065 52.381 5.50 5.50 38.10 3.16
2417 2790 1.155042 GAGCATGGAATCCGAGATGC 58.845 55.000 13.35 13.35 41.29 3.91
2461 2838 7.031975 GCAGTATAGAATGATGATGTCGATCA 58.968 38.462 0.00 0.00 42.92 2.92
2479 2856 4.203764 CGATCATCTGTACGTACGGTTTTC 59.796 45.833 28.90 20.34 34.25 2.29
2551 2930 5.405571 GGTATGTATGGTCGATCATGTGTTC 59.594 44.000 21.50 8.59 0.00 3.18
2567 2946 1.468127 TGTTCGTGCATGGTGCTTATG 59.532 47.619 5.98 0.00 45.31 1.90
2570 2952 2.549926 TCGTGCATGGTGCTTATGTAG 58.450 47.619 5.98 0.00 45.31 2.74
2611 2993 8.024285 CACTTGCGAACCAAAGGTAATAATTAA 58.976 33.333 0.00 0.00 33.12 1.40
2612 2994 8.241367 ACTTGCGAACCAAAGGTAATAATTAAG 58.759 33.333 0.00 0.00 33.12 1.85
2613 2995 7.690952 TGCGAACCAAAGGTAATAATTAAGT 57.309 32.000 0.00 0.00 33.12 2.24
2615 2997 8.667463 TGCGAACCAAAGGTAATAATTAAGTAC 58.333 33.333 0.00 0.00 33.12 2.73
2617 2999 9.977762 CGAACCAAAGGTAATAATTAAGTACAC 57.022 33.333 0.00 0.00 33.12 2.90
2618 3000 9.977762 GAACCAAAGGTAATAATTAAGTACACG 57.022 33.333 0.00 0.00 33.12 4.49
2639 3021 2.018515 GAGAGTACTCCCTCTGTTCGG 58.981 57.143 19.38 0.00 41.85 4.30
2641 3023 2.041350 AGAGTACTCCCTCTGTTCGGAA 59.959 50.000 19.38 0.00 40.30 4.30
2642 3024 2.824341 GAGTACTCCCTCTGTTCGGAAA 59.176 50.000 12.13 0.00 0.00 3.13
2643 3025 3.442076 AGTACTCCCTCTGTTCGGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
2647 3029 5.437191 ACTCCCTCTGTTCGGAAATATTT 57.563 39.130 0.00 0.00 0.00 1.40
2648 3030 6.555463 ACTCCCTCTGTTCGGAAATATTTA 57.445 37.500 0.00 0.00 0.00 1.40
2652 3034 6.329197 TCCCTCTGTTCGGAAATATTTATCCT 59.671 38.462 0.00 0.00 33.36 3.24
2654 3036 8.154856 CCCTCTGTTCGGAAATATTTATCCTAA 58.845 37.037 0.00 0.00 33.36 2.69
2718 3100 9.522804 GTCTAGATACAACCATTTCTAGAACAG 57.477 37.037 4.18 0.38 44.89 3.16
2719 3101 8.696374 TCTAGATACAACCATTTCTAGAACAGG 58.304 37.037 17.00 17.00 42.12 4.00
2720 3102 7.259088 AGATACAACCATTTCTAGAACAGGT 57.741 36.000 18.06 18.06 31.42 4.00
2722 3104 8.993424 AGATACAACCATTTCTAGAACAGGTAT 58.007 33.333 22.05 17.04 30.39 2.73
2723 3105 9.614792 GATACAACCATTTCTAGAACAGGTATT 57.385 33.333 22.05 16.00 30.39 1.89
2724 3106 9.975218 ATACAACCATTTCTAGAACAGGTATTT 57.025 29.630 22.05 14.23 30.39 1.40
2725 3107 8.336801 ACAACCATTTCTAGAACAGGTATTTC 57.663 34.615 22.05 0.00 30.39 2.17
2727 3109 6.113411 ACCATTTCTAGAACAGGTATTTCCG 58.887 40.000 20.95 0.42 41.99 4.30
2729 3111 4.811969 TTCTAGAACAGGTATTTCCGCA 57.188 40.909 0.00 0.00 41.99 5.69
2731 3113 1.722011 AGAACAGGTATTTCCGCACG 58.278 50.000 0.00 0.00 41.99 5.34
2732 3114 0.725117 GAACAGGTATTTCCGCACGG 59.275 55.000 1.73 1.73 41.99 4.94
2820 4458 4.018870 TGATGCACTTTGGATGTACCCTTA 60.019 41.667 0.00 0.00 38.00 2.69
2867 4505 6.223351 ACTTTTGGAGTAGGAGCACTATAC 57.777 41.667 0.00 0.00 36.65 1.47
2960 4598 1.269778 CGCCAAACTGAGTGAGTGAGA 60.270 52.381 0.00 0.00 34.02 3.27
3094 4764 5.115773 GTCGTAACGCTCTCATCATTCATAC 59.884 44.000 0.00 0.00 0.00 2.39
3143 4815 2.609737 GGATCATATCGAACGGTGGTCC 60.610 54.545 6.34 6.34 34.97 4.46
3178 4851 0.935898 CGCAATCATCCAGCTCTGTC 59.064 55.000 0.00 0.00 0.00 3.51
3182 4855 1.039068 ATCATCCAGCTCTGTCTCCG 58.961 55.000 0.00 0.00 0.00 4.63
3187 4865 0.739112 CCAGCTCTGTCTCCGAAAGC 60.739 60.000 0.00 0.00 0.00 3.51
3236 4914 4.811557 CAGTAGTAGCCATGTTAAGAAGCC 59.188 45.833 0.00 0.00 0.00 4.35
3249 4927 5.242838 TGTTAAGAAGCCCGTCATCATTTTT 59.757 36.000 0.00 0.00 0.00 1.94
3250 4928 3.855689 AGAAGCCCGTCATCATTTTTG 57.144 42.857 0.00 0.00 0.00 2.44
3255 4933 2.094545 GCCCGTCATCATTTTTGAAGCT 60.095 45.455 0.00 0.00 0.00 3.74
3259 4937 4.618489 CCGTCATCATTTTTGAAGCTGTTC 59.382 41.667 0.00 0.00 0.00 3.18
3266 4944 4.998671 TTTTTGAAGCTGTTCCATCACA 57.001 36.364 0.00 0.00 0.00 3.58
3271 4949 4.005650 TGAAGCTGTTCCATCACAAGATC 58.994 43.478 0.00 0.00 30.20 2.75
3274 4952 3.518705 AGCTGTTCCATCACAAGATCTCT 59.481 43.478 0.00 0.00 30.20 3.10
3281 4959 5.434408 TCCATCACAAGATCTCTGGATTTG 58.566 41.667 0.00 0.00 30.20 2.32
3287 4965 5.646793 CACAAGATCTCTGGATTTGACATGT 59.353 40.000 0.00 0.00 31.46 3.21
3312 4990 3.688694 TTTTCTTCGGTTAGCCTAGCA 57.311 42.857 0.00 0.00 0.00 3.49
3313 4991 3.688694 TTTCTTCGGTTAGCCTAGCAA 57.311 42.857 0.00 0.00 0.00 3.91
3314 4992 3.906720 TTCTTCGGTTAGCCTAGCAAT 57.093 42.857 0.00 0.00 0.00 3.56
3315 4993 3.454371 TCTTCGGTTAGCCTAGCAATC 57.546 47.619 0.00 0.00 0.00 2.67
3316 4994 2.764010 TCTTCGGTTAGCCTAGCAATCA 59.236 45.455 0.00 0.00 0.00 2.57
3317 4995 3.196901 TCTTCGGTTAGCCTAGCAATCAA 59.803 43.478 0.00 0.00 0.00 2.57
3318 4996 2.901249 TCGGTTAGCCTAGCAATCAAC 58.099 47.619 0.00 0.00 0.00 3.18
3319 4997 1.593006 CGGTTAGCCTAGCAATCAACG 59.407 52.381 0.00 0.00 0.00 4.10
3320 4998 1.940613 GGTTAGCCTAGCAATCAACGG 59.059 52.381 0.00 0.00 0.00 4.44
3321 4999 2.629051 GTTAGCCTAGCAATCAACGGT 58.371 47.619 0.00 0.00 0.00 4.83
3322 5000 2.596904 TAGCCTAGCAATCAACGGTC 57.403 50.000 0.00 0.00 0.00 4.79
3323 5001 0.905357 AGCCTAGCAATCAACGGTCT 59.095 50.000 0.00 0.00 0.00 3.85
3324 5002 1.279271 AGCCTAGCAATCAACGGTCTT 59.721 47.619 0.00 0.00 0.00 3.01
3325 5003 2.500098 AGCCTAGCAATCAACGGTCTTA 59.500 45.455 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 3.711863 CCAAATATGGGGTGGATATGGG 58.288 50.000 0.00 0.00 43.51 4.00
59 62 4.478317 TCCCCATATCTAGCCCAAATATGG 59.522 45.833 15.74 15.74 46.37 2.74
71 74 0.190069 ACCGGCACTCCCCATATCTA 59.810 55.000 0.00 0.00 0.00 1.98
72 75 1.074471 ACCGGCACTCCCCATATCT 60.074 57.895 0.00 0.00 0.00 1.98
73 76 1.371558 GACCGGCACTCCCCATATC 59.628 63.158 0.00 0.00 0.00 1.63
92 95 2.742372 CCCTCAAACGTCTGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
97 100 1.147600 AAACGGCCCTCAAACGTCT 59.852 52.632 0.00 0.00 40.31 4.18
99 102 1.452470 ACAAACGGCCCTCAAACGT 60.452 52.632 0.00 0.00 43.43 3.99
140 143 0.178767 TGATCGGGCTCTTGTCATGG 59.821 55.000 0.00 0.00 0.00 3.66
142 145 3.580022 TCATATGATCGGGCTCTTGTCAT 59.420 43.478 0.00 1.65 34.26 3.06
146 149 2.934364 GCCTCATATGATCGGGCTCTTG 60.934 54.545 21.47 1.73 39.68 3.02
157 182 1.140852 CCTCAAACCCGCCTCATATGA 59.859 52.381 5.07 5.07 0.00 2.15
185 210 6.707440 TCTCAAACCTTAAAGCATCAACAA 57.293 33.333 0.00 0.00 0.00 2.83
189 214 5.179368 CGTCTTCTCAAACCTTAAAGCATCA 59.821 40.000 0.00 0.00 0.00 3.07
196 221 4.834496 TCCCTACGTCTTCTCAAACCTTAA 59.166 41.667 0.00 0.00 0.00 1.85
213 238 7.450634 ACCCTCTTAAATTTTGACTTTCCCTAC 59.549 37.037 0.00 0.00 0.00 3.18
223 248 8.537016 TCTCTAATCGACCCTCTTAAATTTTGA 58.463 33.333 0.00 0.00 0.00 2.69
374 400 3.136750 CCTCCGGCTGATGAGAGG 58.863 66.667 0.00 0.00 40.00 3.69
430 456 2.638480 TTTTGTGTGGACTGAGAGGG 57.362 50.000 0.00 0.00 0.00 4.30
488 522 4.415150 TGGTGGCCTAGCTGCTGC 62.415 66.667 13.43 7.62 40.05 5.25
490 524 4.106925 GCTGGTGGCCTAGCTGCT 62.107 66.667 20.62 7.57 45.01 4.24
538 582 1.889573 GCTAATGACGGAGCTGGGC 60.890 63.158 0.00 0.00 35.73 5.36
542 586 0.905357 ACCTTGCTAATGACGGAGCT 59.095 50.000 0.00 0.00 39.54 4.09
555 599 0.931005 CGAGCCGAAGATTACCTTGC 59.069 55.000 0.00 0.00 34.68 4.01
565 609 4.514577 ATGGGACGCGAGCCGAAG 62.515 66.667 15.93 0.00 41.02 3.79
566 610 4.812476 CATGGGACGCGAGCCGAA 62.812 66.667 15.93 6.18 41.02 4.30
606 695 2.286294 GCATCACTACGAAATCAGGCAG 59.714 50.000 0.00 0.00 0.00 4.85
653 742 6.484977 AGGCTAAGCTATAATTCTGAAACAGC 59.515 38.462 0.00 1.40 0.00 4.40
655 744 7.796054 AGAGGCTAAGCTATAATTCTGAAACA 58.204 34.615 0.00 0.00 0.00 2.83
664 753 5.721000 AGATGCAGAGAGGCTAAGCTATAAT 59.279 40.000 0.00 0.00 34.04 1.28
667 756 3.509442 AGATGCAGAGAGGCTAAGCTAT 58.491 45.455 0.00 0.00 34.04 2.97
672 761 1.418334 GGGAGATGCAGAGAGGCTAA 58.582 55.000 0.00 0.00 34.04 3.09
673 762 0.825425 CGGGAGATGCAGAGAGGCTA 60.825 60.000 0.00 0.00 34.04 3.93
674 763 2.132996 CGGGAGATGCAGAGAGGCT 61.133 63.158 0.00 0.00 34.04 4.58
675 764 2.420890 CGGGAGATGCAGAGAGGC 59.579 66.667 0.00 0.00 0.00 4.70
676 765 3.136750 CCGGGAGATGCAGAGAGG 58.863 66.667 0.00 0.00 0.00 3.69
678 767 3.157252 GGCCGGGAGATGCAGAGA 61.157 66.667 2.18 0.00 0.00 3.10
705 794 7.510407 AGAAAGCTAGGAACTAAAACAGAAGT 58.490 34.615 0.00 0.00 42.17 3.01
707 796 8.747538 AAAGAAAGCTAGGAACTAAAACAGAA 57.252 30.769 0.00 0.00 42.17 3.02
748 838 4.637276 TCGACAATTTCTCTTGGCAAGTA 58.363 39.130 25.39 13.19 33.50 2.24
749 839 3.476552 TCGACAATTTCTCTTGGCAAGT 58.523 40.909 25.39 5.67 33.50 3.16
750 840 4.409570 CATCGACAATTTCTCTTGGCAAG 58.590 43.478 21.17 21.17 33.50 4.01
756 848 5.187967 ACTCCTACCATCGACAATTTCTCTT 59.812 40.000 0.00 0.00 0.00 2.85
758 850 5.012328 ACTCCTACCATCGACAATTTCTC 57.988 43.478 0.00 0.00 0.00 2.87
766 858 3.488778 TCTCCTACTCCTACCATCGAC 57.511 52.381 0.00 0.00 0.00 4.20
773 865 8.301002 CAACAGCTTATAATCTCCTACTCCTAC 58.699 40.741 0.00 0.00 0.00 3.18
777 869 5.929415 GGCAACAGCTTATAATCTCCTACTC 59.071 44.000 0.00 0.00 0.00 2.59
779 871 5.698545 CAGGCAACAGCTTATAATCTCCTAC 59.301 44.000 0.00 0.00 41.41 3.18
780 872 5.858381 CAGGCAACAGCTTATAATCTCCTA 58.142 41.667 0.00 0.00 41.41 2.94
800 898 2.668212 TCCAAACGCCGAAGCAGG 60.668 61.111 0.00 0.00 39.83 4.85
811 909 6.811170 TGACAACAAAATTCAGAACTCCAAAC 59.189 34.615 0.00 0.00 0.00 2.93
813 911 6.522625 TGACAACAAAATTCAGAACTCCAA 57.477 33.333 0.00 0.00 0.00 3.53
816 914 4.978580 GGCTGACAACAAAATTCAGAACTC 59.021 41.667 2.02 0.00 39.36 3.01
817 915 4.498009 CGGCTGACAACAAAATTCAGAACT 60.498 41.667 2.02 0.00 39.36 3.01
818 916 3.730715 CGGCTGACAACAAAATTCAGAAC 59.269 43.478 2.02 0.00 39.36 3.01
837 935 1.859080 CTTACAATCTTCTACCGCGGC 59.141 52.381 28.58 0.00 0.00 6.53
838 936 1.859080 GCTTACAATCTTCTACCGCGG 59.141 52.381 26.86 26.86 0.00 6.46
841 939 3.799420 GCAGAGCTTACAATCTTCTACCG 59.201 47.826 0.00 0.00 0.00 4.02
842 940 5.017294 AGCAGAGCTTACAATCTTCTACC 57.983 43.478 0.00 0.00 33.89 3.18
863 972 5.119898 CAGTTCGAAATTCAGAAGACCAGAG 59.880 44.000 0.00 0.00 0.00 3.35
884 1196 2.822561 TCTGAACTCGATCTGAAGCAGT 59.177 45.455 0.00 0.00 32.61 4.40
908 1220 6.467677 TCTAGTACTACTACGTGTGAAACCT 58.532 40.000 0.00 0.00 34.36 3.50
909 1221 6.727824 TCTAGTACTACTACGTGTGAAACC 57.272 41.667 0.00 0.00 34.36 3.27
910 1222 7.954786 GTCTTCTAGTACTACTACGTGTGAAAC 59.045 40.741 0.00 0.00 37.35 2.78
913 1225 6.810676 CAGTCTTCTAGTACTACTACGTGTGA 59.189 42.308 0.00 0.00 0.00 3.58
915 1227 5.580297 GCAGTCTTCTAGTACTACTACGTGT 59.420 44.000 0.00 0.00 0.00 4.49
917 1229 5.115480 GGCAGTCTTCTAGTACTACTACGT 58.885 45.833 0.00 0.00 0.00 3.57
918 1230 5.114780 TGGCAGTCTTCTAGTACTACTACG 58.885 45.833 0.00 0.00 0.00 3.51
919 1231 6.766944 TCATGGCAGTCTTCTAGTACTACTAC 59.233 42.308 0.00 0.00 0.00 2.73
920 1232 6.896883 TCATGGCAGTCTTCTAGTACTACTA 58.103 40.000 0.00 0.00 0.00 1.82
922 1234 6.452494 TTCATGGCAGTCTTCTAGTACTAC 57.548 41.667 0.00 0.00 0.00 2.73
923 1235 7.476540 TTTTCATGGCAGTCTTCTAGTACTA 57.523 36.000 1.89 1.89 0.00 1.82
925 1237 7.010923 CAGATTTTCATGGCAGTCTTCTAGTAC 59.989 40.741 0.00 0.00 0.00 2.73
927 1239 5.879223 CAGATTTTCATGGCAGTCTTCTAGT 59.121 40.000 0.00 0.00 0.00 2.57
928 1240 5.296283 CCAGATTTTCATGGCAGTCTTCTAG 59.704 44.000 0.00 0.00 0.00 2.43
929 1241 5.188434 CCAGATTTTCATGGCAGTCTTCTA 58.812 41.667 0.00 0.00 0.00 2.10
932 1244 3.771216 ACCAGATTTTCATGGCAGTCTT 58.229 40.909 0.00 0.00 40.45 3.01
933 1245 3.446442 ACCAGATTTTCATGGCAGTCT 57.554 42.857 0.00 0.00 40.45 3.24
934 1246 3.507233 TCAACCAGATTTTCATGGCAGTC 59.493 43.478 0.00 0.00 40.45 3.51
935 1247 3.499338 TCAACCAGATTTTCATGGCAGT 58.501 40.909 0.00 0.00 40.45 4.40
936 1248 4.524316 TTCAACCAGATTTTCATGGCAG 57.476 40.909 0.00 0.00 40.45 4.85
937 1249 5.486735 AATTCAACCAGATTTTCATGGCA 57.513 34.783 0.00 0.00 40.45 4.92
938 1250 5.062558 CGAAATTCAACCAGATTTTCATGGC 59.937 40.000 10.94 0.00 42.52 4.40
939 1251 6.089820 CACGAAATTCAACCAGATTTTCATGG 59.910 38.462 10.94 0.00 42.52 3.66
940 1252 6.400303 GCACGAAATTCAACCAGATTTTCATG 60.400 38.462 10.94 8.02 42.52 3.07
941 1253 5.634859 GCACGAAATTCAACCAGATTTTCAT 59.365 36.000 10.94 0.00 42.52 2.57
942 1254 4.981674 GCACGAAATTCAACCAGATTTTCA 59.018 37.500 10.94 0.00 42.52 2.69
943 1255 4.385748 GGCACGAAATTCAACCAGATTTTC 59.614 41.667 0.00 0.00 40.58 2.29
944 1256 4.202202 TGGCACGAAATTCAACCAGATTTT 60.202 37.500 0.00 0.00 33.71 1.82
947 1259 2.513753 TGGCACGAAATTCAACCAGAT 58.486 42.857 0.00 0.00 0.00 2.90
948 1260 1.974265 TGGCACGAAATTCAACCAGA 58.026 45.000 0.00 0.00 0.00 3.86
949 1261 3.302365 AATGGCACGAAATTCAACCAG 57.698 42.857 0.00 0.00 0.00 4.00
951 1263 6.720012 AAATTAATGGCACGAAATTCAACC 57.280 33.333 0.00 0.00 0.00 3.77
952 1264 8.233692 TGTAAATTAATGGCACGAAATTCAAC 57.766 30.769 0.00 0.36 0.00 3.18
953 1265 8.818141 TTGTAAATTAATGGCACGAAATTCAA 57.182 26.923 0.00 0.00 0.00 2.69
960 1272 5.336055 CCCAACTTGTAAATTAATGGCACGA 60.336 40.000 0.00 0.00 0.00 4.35
975 1290 2.281761 CCTGCGCTCCCAACTTGT 60.282 61.111 9.73 0.00 0.00 3.16
976 1291 1.580845 CTTCCTGCGCTCCCAACTTG 61.581 60.000 9.73 0.00 0.00 3.16
983 1298 0.813210 CATCTTCCTTCCTGCGCTCC 60.813 60.000 9.73 0.00 0.00 4.70
1197 1512 0.104882 TGGTACTCCAAGGTGGTGGA 60.105 55.000 0.00 0.00 45.72 4.02
1206 1521 6.328934 TGGAGCAGATTATAATGGTACTCCAA 59.671 38.462 22.07 12.69 46.00 3.53
1207 1522 5.843969 TGGAGCAGATTATAATGGTACTCCA 59.156 40.000 21.22 21.22 46.61 3.86
1208 1523 6.360370 TGGAGCAGATTATAATGGTACTCC 57.640 41.667 18.18 18.18 41.24 3.85
1209 1524 7.390027 ACATGGAGCAGATTATAATGGTACTC 58.610 38.462 1.78 4.59 0.00 2.59
1244 1563 4.080299 AGGGCCAAAACCAATTTAACACAA 60.080 37.500 6.18 0.00 0.00 3.33
1284 1603 0.798776 CGTTCACCCACTGCAGAATC 59.201 55.000 23.35 0.98 0.00 2.52
1285 1604 0.396435 TCGTTCACCCACTGCAGAAT 59.604 50.000 23.35 0.00 0.00 2.40
1286 1605 0.396435 ATCGTTCACCCACTGCAGAA 59.604 50.000 23.35 0.00 0.00 3.02
1287 1606 0.037326 GATCGTTCACCCACTGCAGA 60.037 55.000 23.35 0.00 0.00 4.26
1288 1607 0.036952 AGATCGTTCACCCACTGCAG 60.037 55.000 13.48 13.48 0.00 4.41
1289 1608 0.320683 CAGATCGTTCACCCACTGCA 60.321 55.000 0.00 0.00 0.00 4.41
1350 1669 0.035458 CCTTCCCAAGCAAGACGAGT 59.965 55.000 0.00 0.00 0.00 4.18
1353 1672 1.676014 CCTACCTTCCCAAGCAAGACG 60.676 57.143 0.00 0.00 0.00 4.18
1392 1711 8.962679 TCTTGTTAGTGAAAAATTAACACAGGT 58.037 29.630 0.00 0.00 39.78 4.00
1397 1716 9.589111 GGGTTTCTTGTTAGTGAAAAATTAACA 57.411 29.630 0.00 0.00 38.71 2.41
1398 1717 9.037737 GGGGTTTCTTGTTAGTGAAAAATTAAC 57.962 33.333 0.00 0.00 34.52 2.01
1406 1725 5.511363 TCAAAGGGGTTTCTTGTTAGTGAA 58.489 37.500 0.00 0.00 0.00 3.18
1410 1729 7.203255 CTTACTCAAAGGGGTTTCTTGTTAG 57.797 40.000 0.00 0.00 0.00 2.34
1424 1743 5.240891 TCATTCTGACAGCCTTACTCAAAG 58.759 41.667 0.00 0.00 34.73 2.77
1432 1751 6.054295 GTGAGAATATCATTCTGACAGCCTT 58.946 40.000 11.93 0.00 40.92 4.35
1464 1783 1.325943 GCGCATTCTTAGACTGCAGTC 59.674 52.381 34.82 34.82 45.08 3.51
1465 1784 1.066573 AGCGCATTCTTAGACTGCAGT 60.067 47.619 21.88 21.88 37.96 4.40
1474 1805 0.108851 TCGACAGCAGCGCATTCTTA 60.109 50.000 11.47 0.00 0.00 2.10
1555 1886 0.095417 GACGCTTGAATCTCGGCAAC 59.905 55.000 0.00 0.00 0.00 4.17
1577 1908 2.644676 GAGTGGACCATTTTAGAGGGC 58.355 52.381 0.00 0.00 0.00 5.19
1600 1932 7.779073 AGTTGCTAACCAATTACTATAGTCGT 58.221 34.615 9.12 0.00 35.55 4.34
1601 1933 8.540492 CAAGTTGCTAACCAATTACTATAGTCG 58.460 37.037 9.12 0.00 35.55 4.18
1602 1934 9.379791 ACAAGTTGCTAACCAATTACTATAGTC 57.620 33.333 9.12 0.00 35.55 2.59
1603 1935 9.162764 CACAAGTTGCTAACCAATTACTATAGT 57.837 33.333 10.87 10.87 35.55 2.12
1604 1936 9.378551 TCACAAGTTGCTAACCAATTACTATAG 57.621 33.333 1.81 0.00 35.55 1.31
1606 1938 8.630054 TTCACAAGTTGCTAACCAATTACTAT 57.370 30.769 1.81 0.00 35.55 2.12
1607 1939 8.453238 TTTCACAAGTTGCTAACCAATTACTA 57.547 30.769 1.81 0.00 35.55 1.82
1608 1940 6.952773 TTCACAAGTTGCTAACCAATTACT 57.047 33.333 1.81 0.00 35.55 2.24
1616 1956 9.243637 TCAAATTACATTTCACAAGTTGCTAAC 57.756 29.630 1.81 0.00 29.82 2.34
1624 1964 9.801714 GCAGAAATTCAAATTACATTTCACAAG 57.198 29.630 14.62 6.83 38.75 3.16
1625 1965 9.545105 AGCAGAAATTCAAATTACATTTCACAA 57.455 25.926 14.62 0.00 38.75 3.33
1632 1972 7.117236 CAGCAACAGCAGAAATTCAAATTACAT 59.883 33.333 0.00 0.00 0.00 2.29
1633 1973 6.421501 CAGCAACAGCAGAAATTCAAATTACA 59.578 34.615 0.00 0.00 0.00 2.41
1634 1974 6.128742 CCAGCAACAGCAGAAATTCAAATTAC 60.129 38.462 0.00 0.00 0.00 1.89
1635 1975 5.927689 CCAGCAACAGCAGAAATTCAAATTA 59.072 36.000 0.00 0.00 0.00 1.40
1636 1976 4.753107 CCAGCAACAGCAGAAATTCAAATT 59.247 37.500 0.00 0.00 0.00 1.82
1637 1977 4.202284 ACCAGCAACAGCAGAAATTCAAAT 60.202 37.500 0.00 0.00 0.00 2.32
1641 1981 4.708726 ATACCAGCAACAGCAGAAATTC 57.291 40.909 0.00 0.00 0.00 2.17
1642 1982 9.745018 ATATATATACCAGCAACAGCAGAAATT 57.255 29.630 0.00 0.00 0.00 1.82
1663 2005 8.914011 TGCGCTCCTTGTTCTACATATATATAT 58.086 33.333 9.73 0.00 0.00 0.86
1664 2006 8.188799 GTGCGCTCCTTGTTCTACATATATATA 58.811 37.037 9.73 0.00 0.00 0.86
1665 2007 7.036220 GTGCGCTCCTTGTTCTACATATATAT 58.964 38.462 9.73 0.00 0.00 0.86
1666 2008 6.387465 GTGCGCTCCTTGTTCTACATATATA 58.613 40.000 9.73 0.00 0.00 0.86
1667 2009 5.230942 GTGCGCTCCTTGTTCTACATATAT 58.769 41.667 9.73 0.00 0.00 0.86
1668 2010 4.617959 GTGCGCTCCTTGTTCTACATATA 58.382 43.478 9.73 0.00 0.00 0.86
1669 2011 3.458189 GTGCGCTCCTTGTTCTACATAT 58.542 45.455 9.73 0.00 0.00 1.78
1670 2012 2.734175 CGTGCGCTCCTTGTTCTACATA 60.734 50.000 9.73 0.00 0.00 2.29
1671 2013 1.726853 GTGCGCTCCTTGTTCTACAT 58.273 50.000 9.73 0.00 0.00 2.29
1772 2116 8.048534 AGTTTCCATGAGATGAAACACTATTG 57.951 34.615 20.38 0.00 39.27 1.90
1773 2117 7.337942 GGAGTTTCCATGAGATGAAACACTATT 59.662 37.037 20.38 6.11 39.27 1.73
1775 2119 6.013379 AGGAGTTTCCATGAGATGAAACACTA 60.013 38.462 20.38 0.00 39.61 2.74
1778 2122 5.246981 AGGAGTTTCCATGAGATGAAACA 57.753 39.130 20.38 0.00 39.61 2.83
1801 2145 8.215736 TCAAAAGATCAGTCATGGACATATCAT 58.784 33.333 0.00 0.79 34.60 2.45
1803 2147 7.714377 ACTCAAAAGATCAGTCATGGACATATC 59.286 37.037 0.00 1.84 34.60 1.63
1807 2151 4.999311 CACTCAAAAGATCAGTCATGGACA 59.001 41.667 0.00 0.00 34.60 4.02
1808 2152 4.394300 CCACTCAAAAGATCAGTCATGGAC 59.606 45.833 0.00 0.00 0.00 4.02
1809 2153 4.566278 CCCACTCAAAAGATCAGTCATGGA 60.566 45.833 0.00 0.00 0.00 3.41
1811 2155 4.582869 TCCCACTCAAAAGATCAGTCATG 58.417 43.478 0.00 0.00 0.00 3.07
1822 2183 0.036732 AGCTGCGATCCCACTCAAAA 59.963 50.000 0.00 0.00 0.00 2.44
1845 2208 1.323412 TCGATAGCCTCTTGAGCTCC 58.677 55.000 12.15 0.00 41.83 4.70
1863 2226 2.529619 GCGCTTCCTCATCGCCTTC 61.530 63.158 0.00 0.00 42.71 3.46
1931 2294 0.620556 ATCTTCGTGGGTGGCAGATT 59.379 50.000 0.00 0.00 0.00 2.40
1939 2302 9.990360 AAAATTTTAAAATACATCTTCGTGGGT 57.010 25.926 13.68 0.00 0.00 4.51
1958 2321 8.606040 AGCACAGCACATTATGTTAAAATTTT 57.394 26.923 8.75 8.75 0.00 1.82
1994 2362 0.171455 GGTACTGCTCGTCCTGTGAG 59.829 60.000 0.00 0.00 36.53 3.51
1997 2365 4.845811 AGGTACTGCTCGTCCTGT 57.154 55.556 0.00 0.00 37.18 4.00
2066 2434 2.746277 GCCACCACCACGTCCATC 60.746 66.667 0.00 0.00 0.00 3.51
2179 2547 6.726490 TTGTCAGTGAAGTTTAGTAGGAGT 57.274 37.500 0.00 0.00 0.00 3.85
2180 2548 6.984474 TGTTTGTCAGTGAAGTTTAGTAGGAG 59.016 38.462 0.00 0.00 0.00 3.69
2181 2549 6.880484 TGTTTGTCAGTGAAGTTTAGTAGGA 58.120 36.000 0.00 0.00 0.00 2.94
2182 2550 7.548196 TTGTTTGTCAGTGAAGTTTAGTAGG 57.452 36.000 0.00 0.00 0.00 3.18
2183 2551 7.908601 GGTTTGTTTGTCAGTGAAGTTTAGTAG 59.091 37.037 0.00 0.00 0.00 2.57
2184 2552 7.608761 AGGTTTGTTTGTCAGTGAAGTTTAGTA 59.391 33.333 0.00 0.00 0.00 1.82
2185 2553 6.433093 AGGTTTGTTTGTCAGTGAAGTTTAGT 59.567 34.615 0.00 0.00 0.00 2.24
2187 2555 6.616947 CAGGTTTGTTTGTCAGTGAAGTTTA 58.383 36.000 0.00 0.00 0.00 2.01
2201 2569 1.070601 GGAGCCAATGCAGGTTTGTTT 59.929 47.619 0.00 0.00 41.13 2.83
2204 2572 1.213537 CGGAGCCAATGCAGGTTTG 59.786 57.895 0.00 0.00 41.13 2.93
2211 2579 1.000274 AGAACAAAACGGAGCCAATGC 60.000 47.619 0.00 0.00 37.95 3.56
2212 2580 3.052036 CAAGAACAAAACGGAGCCAATG 58.948 45.455 0.00 0.00 0.00 2.82
2213 2581 2.693074 ACAAGAACAAAACGGAGCCAAT 59.307 40.909 0.00 0.00 0.00 3.16
2216 2585 1.673920 TCACAAGAACAAAACGGAGCC 59.326 47.619 0.00 0.00 0.00 4.70
2221 2590 4.788100 CAGAACTGTCACAAGAACAAAACG 59.212 41.667 0.00 0.00 0.00 3.60
2222 2591 5.938322 TCAGAACTGTCACAAGAACAAAAC 58.062 37.500 1.73 0.00 0.00 2.43
2225 2594 6.150976 ACAATTCAGAACTGTCACAAGAACAA 59.849 34.615 0.00 0.00 0.00 2.83
2233 2602 6.801539 TGGAATACAATTCAGAACTGTCAC 57.198 37.500 0.00 0.00 0.00 3.67
2238 2607 6.078456 TGGGATGGAATACAATTCAGAACT 57.922 37.500 2.36 0.00 0.00 3.01
2240 2609 5.302568 GCATGGGATGGAATACAATTCAGAA 59.697 40.000 0.00 0.00 0.00 3.02
2249 2618 3.498774 ACAGAGCATGGGATGGAATAC 57.501 47.619 0.00 0.00 0.00 1.89
2253 2622 1.355381 ACAAACAGAGCATGGGATGGA 59.645 47.619 0.00 0.00 0.00 3.41
2255 2624 3.367703 GGAAACAAACAGAGCATGGGATG 60.368 47.826 0.00 0.00 0.00 3.51
2256 2625 2.827921 GGAAACAAACAGAGCATGGGAT 59.172 45.455 0.00 0.00 0.00 3.85
2257 2626 2.238521 GGAAACAAACAGAGCATGGGA 58.761 47.619 0.00 0.00 0.00 4.37
2258 2627 1.273327 GGGAAACAAACAGAGCATGGG 59.727 52.381 0.00 0.00 0.00 4.00
2259 2628 2.242043 AGGGAAACAAACAGAGCATGG 58.758 47.619 0.00 0.00 0.00 3.66
2260 2629 3.318839 TGAAGGGAAACAAACAGAGCATG 59.681 43.478 0.00 0.00 0.00 4.06
2261 2630 3.565307 TGAAGGGAAACAAACAGAGCAT 58.435 40.909 0.00 0.00 0.00 3.79
2262 2631 2.951642 CTGAAGGGAAACAAACAGAGCA 59.048 45.455 0.00 0.00 0.00 4.26
2263 2632 2.287849 GCTGAAGGGAAACAAACAGAGC 60.288 50.000 0.00 0.00 0.00 4.09
2264 2633 2.951642 TGCTGAAGGGAAACAAACAGAG 59.048 45.455 0.00 0.00 0.00 3.35
2265 2634 3.011566 TGCTGAAGGGAAACAAACAGA 57.988 42.857 0.00 0.00 0.00 3.41
2266 2635 3.131046 AGTTGCTGAAGGGAAACAAACAG 59.869 43.478 0.00 0.00 0.00 3.16
2267 2636 3.096092 AGTTGCTGAAGGGAAACAAACA 58.904 40.909 0.00 0.00 0.00 2.83
2268 2637 3.490933 GGAGTTGCTGAAGGGAAACAAAC 60.491 47.826 0.00 0.00 0.00 2.93
2269 2638 2.693074 GGAGTTGCTGAAGGGAAACAAA 59.307 45.455 0.00 0.00 0.00 2.83
2270 2639 2.306847 GGAGTTGCTGAAGGGAAACAA 58.693 47.619 0.00 0.00 0.00 2.83
2333 2702 2.879462 GCGGTGTAGCGTTCCTCG 60.879 66.667 5.34 0.00 43.12 4.63
2334 2703 1.516603 GAGCGGTGTAGCGTTCCTC 60.517 63.158 8.77 2.26 43.00 3.71
2335 2704 1.977544 AGAGCGGTGTAGCGTTCCT 60.978 57.895 14.90 0.00 43.00 3.36
2336 2705 1.805945 CAGAGCGGTGTAGCGTTCC 60.806 63.158 14.90 1.42 43.00 3.62
2337 2706 2.445438 GCAGAGCGGTGTAGCGTTC 61.445 63.158 11.46 11.46 43.00 3.95
2338 2707 2.432628 GCAGAGCGGTGTAGCGTT 60.433 61.111 0.00 0.00 43.00 4.84
2354 2727 4.459089 GGAGGCGGACTGTGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
2355 2728 2.997315 TGGAGGCGGACTGTGGAG 60.997 66.667 0.00 0.00 0.00 3.86
2360 2733 2.009774 CAATTAAGTGGAGGCGGACTG 58.990 52.381 0.00 0.00 0.00 3.51
2362 2735 1.065709 TCCAATTAAGTGGAGGCGGAC 60.066 52.381 20.32 0.00 42.97 4.79
2363 2736 1.281419 TCCAATTAAGTGGAGGCGGA 58.719 50.000 20.32 0.00 42.97 5.54
2372 2745 2.038557 ACAGCACCGACTCCAATTAAGT 59.961 45.455 0.00 0.00 0.00 2.24
2378 2751 2.280797 GCACAGCACCGACTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
2380 2753 2.433318 GAGCACAGCACCGACTCC 60.433 66.667 0.00 0.00 0.00 3.85
2381 2754 2.807045 CGAGCACAGCACCGACTC 60.807 66.667 0.00 0.00 0.00 3.36
2384 2757 4.724602 GCTCGAGCACAGCACCGA 62.725 66.667 31.91 6.40 41.59 4.69
2417 2790 5.408356 ACTGCTACGTACACAGGAATAAAG 58.592 41.667 19.73 0.00 35.70 1.85
2461 2838 5.953183 TGTATGAAAACCGTACGTACAGAT 58.047 37.500 24.50 6.20 39.55 2.90
2627 3009 6.329197 AGGATAAATATTTCCGAACAGAGGGA 59.671 38.462 3.39 0.00 37.10 4.20
2629 3011 9.555727 TTTAGGATAAATATTTCCGAACAGAGG 57.444 33.333 3.39 0.00 37.10 3.69
2692 3074 9.522804 CTGTTCTAGAAATGGTTGTATCTAGAC 57.477 37.037 6.78 7.28 46.02 2.59
2693 3075 8.696374 CCTGTTCTAGAAATGGTTGTATCTAGA 58.304 37.037 6.78 7.15 45.19 2.43
2694 3076 8.478877 ACCTGTTCTAGAAATGGTTGTATCTAG 58.521 37.037 19.29 0.00 41.66 2.43
2696 3078 7.259088 ACCTGTTCTAGAAATGGTTGTATCT 57.741 36.000 19.29 2.15 0.00 1.98
2697 3079 9.614792 AATACCTGTTCTAGAAATGGTTGTATC 57.385 33.333 25.94 5.90 32.81 2.24
2699 3081 9.444600 GAAATACCTGTTCTAGAAATGGTTGTA 57.555 33.333 25.94 14.73 32.81 2.41
2701 3083 7.414098 CGGAAATACCTGTTCTAGAAATGGTTG 60.414 40.741 25.94 9.09 36.31 3.77
2702 3084 6.598064 CGGAAATACCTGTTCTAGAAATGGTT 59.402 38.462 25.94 14.52 36.31 3.67
2704 3086 5.007724 GCGGAAATACCTGTTCTAGAAATGG 59.992 44.000 18.27 18.27 36.31 3.16
2706 3088 5.585047 GTGCGGAAATACCTGTTCTAGAAAT 59.415 40.000 6.78 0.00 36.31 2.17
2709 3091 3.428452 CGTGCGGAAATACCTGTTCTAGA 60.428 47.826 0.00 0.00 36.31 2.43
2710 3092 2.858344 CGTGCGGAAATACCTGTTCTAG 59.142 50.000 0.00 0.00 36.31 2.43
2712 3094 1.674817 CCGTGCGGAAATACCTGTTCT 60.675 52.381 4.35 0.00 37.50 3.01
2713 3095 0.725117 CCGTGCGGAAATACCTGTTC 59.275 55.000 4.35 0.00 37.50 3.18
2715 3097 1.976898 TCCGTGCGGAAATACCTGT 59.023 52.632 11.22 0.00 42.05 4.00
2724 3106 1.210931 CGTACTCTTTCCGTGCGGA 59.789 57.895 9.48 9.48 43.52 5.54
2725 3107 0.168788 TACGTACTCTTTCCGTGCGG 59.831 55.000 3.94 3.94 43.25 5.69
2727 3109 5.345741 TGTTTAATACGTACTCTTTCCGTGC 59.654 40.000 0.00 0.00 36.12 5.34
2729 3111 6.913170 TCTGTTTAATACGTACTCTTTCCGT 58.087 36.000 0.00 0.00 38.53 4.69
2731 3113 8.976986 TCTTCTGTTTAATACGTACTCTTTCC 57.023 34.615 0.00 0.00 0.00 3.13
2736 3118 8.754230 AAGGTTCTTCTGTTTAATACGTACTC 57.246 34.615 0.00 0.00 0.00 2.59
2737 3119 9.201127 GAAAGGTTCTTCTGTTTAATACGTACT 57.799 33.333 0.00 0.00 0.00 2.73
2739 3121 7.329226 CGGAAAGGTTCTTCTGTTTAATACGTA 59.671 37.037 0.00 0.00 0.00 3.57
2740 3122 6.146673 CGGAAAGGTTCTTCTGTTTAATACGT 59.853 38.462 0.00 0.00 0.00 3.57
2741 3123 6.146673 ACGGAAAGGTTCTTCTGTTTAATACG 59.853 38.462 0.00 0.00 41.21 3.06
2867 4505 0.366871 GCGACTGTACGTCAAGCATG 59.633 55.000 14.97 0.00 42.98 4.06
2960 4598 0.671781 GCGATCGCCATGATTAGCCT 60.672 55.000 29.48 0.00 37.47 4.58
3094 4764 3.547868 GTGCGTGTGTGATACTGTGATAG 59.452 47.826 0.00 0.00 0.00 2.08
3143 4815 1.154413 GCGTTGTTGCAGTGATCGG 60.154 57.895 0.00 0.00 34.15 4.18
3151 4823 0.957362 TGGATGATTGCGTTGTTGCA 59.043 45.000 0.00 0.00 44.61 4.08
3182 4855 2.159382 TCATTTGGTTCCCGAGCTTTC 58.841 47.619 0.00 0.00 0.00 2.62
3187 4865 1.373570 GCTCTCATTTGGTTCCCGAG 58.626 55.000 0.00 0.00 0.00 4.63
3236 4914 4.164822 ACAGCTTCAAAAATGATGACGG 57.835 40.909 0.00 0.00 0.00 4.79
3259 4937 5.296283 GTCAAATCCAGAGATCTTGTGATGG 59.704 44.000 0.00 1.29 32.19 3.51
3266 4944 7.771927 AAAACATGTCAAATCCAGAGATCTT 57.228 32.000 0.00 0.00 0.00 2.40
3292 4970 3.688694 TGCTAGGCTAACCGAAGAAAA 57.311 42.857 0.00 0.00 42.76 2.29
3293 4971 3.688694 TTGCTAGGCTAACCGAAGAAA 57.311 42.857 0.00 0.00 42.76 2.52
3294 4972 3.196901 TGATTGCTAGGCTAACCGAAGAA 59.803 43.478 0.00 0.00 42.76 2.52
3295 4973 2.764010 TGATTGCTAGGCTAACCGAAGA 59.236 45.455 0.00 0.00 42.76 2.87
3296 4974 3.179443 TGATTGCTAGGCTAACCGAAG 57.821 47.619 0.00 0.00 42.76 3.79
3297 4975 3.267483 GTTGATTGCTAGGCTAACCGAA 58.733 45.455 0.00 0.00 42.76 4.30
3298 4976 2.737359 CGTTGATTGCTAGGCTAACCGA 60.737 50.000 0.00 0.00 42.76 4.69
3299 4977 1.593006 CGTTGATTGCTAGGCTAACCG 59.407 52.381 0.00 0.00 42.76 4.44
3300 4978 1.940613 CCGTTGATTGCTAGGCTAACC 59.059 52.381 0.00 0.00 0.00 2.85
3301 4979 2.608090 GACCGTTGATTGCTAGGCTAAC 59.392 50.000 0.00 0.00 0.00 2.34
3302 4980 2.500098 AGACCGTTGATTGCTAGGCTAA 59.500 45.455 0.00 0.00 0.00 3.09
3303 4981 2.108168 AGACCGTTGATTGCTAGGCTA 58.892 47.619 0.00 0.00 0.00 3.93
3304 4982 0.905357 AGACCGTTGATTGCTAGGCT 59.095 50.000 0.00 0.00 0.00 4.58
3305 4983 1.739067 AAGACCGTTGATTGCTAGGC 58.261 50.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.