>input_sequence_54425
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----------------------------------ATGTGCTCGTTGGAGGCGACGCGGGCGGAGCTGGGGCTGGCGGTGC
TGTACCTGAACAAGGCGGAGGCTCGGGACAAGATCTGCAGGGCCATCCAGTACGGCTCCAAGTTCATCAGCAACGGCCAG
CCCGGCACCGCGCAGAACGTCGACAAGTCCACCACCTTGGCTCGCAAGGTCTTCCGCCTCCTCAAGGTCAGTCCACCACC
TTGG----AGTACCATTATAATCTGCTCCATGTAGGCTGCAGTTGTGTTAAATTGGTTTTGGCCCTGACTCGATCGATCT
GCGATTCTGCAGTGGGTGAACGATCTGCATGCTCTCATCAGCCCAGCCCCCAAAGGGACCCCTCTCACACTCGTCTTGCT
TGGGAAGGTAGGTACTCTATTCATTTTAGTACCTGTGTTAATTTTTCACTAACAAGAAACCCCTTTGAGTAAGGCTGTCA
GAATGATATTCTCACTGTCTGTGA------------CTGCAGTCTAAGAATGCGCTGCTGTCGACCTTCCTGTTCCTGGA
CCAGTTCGTGTGGATAGGAAGATCAGGGATATACCAGGTTGGTTCGTTGCCGAGATTCAAGCGTCTCGCCCTCTAA-AAT
GGTCCACTCCAACGACTATAGTA--------ATTGGTTAGCAACTTGTGAAATGTAATTTGAAT-TTC-TGCTGTTGCTG
GTATATATATATATG--TAGAACAAGGAGCGCACGGACCGCATCGCCAGGATATCCCTCTACTGCTGGATGGCCTCCTCT
GTCTGTGCAAGCCTAGTCGAGGTACGTACTAGGCACAATAGTGTTTCATCTCATGGAAACTCCTATGATATGTCC-----
------------ATGACTGATCTTTTGAGTGGGATCGC--AGCTTGGGGAGCTCAAGAGGCTATCGAAGGCGATGAGGAA
GCGCGCCAAGGAGCTCAGGGGCGCCGACAAATACGAGGTACGGTATCATTTTAAATCTGCCACCCACGAAGATGTATTTT
AAAATTTTAACATAATG-----TGCTGTGCTTTGTGATCTTCTCACAGGACGAGCAGTACCTGGGGAAGATGAAGCAGTC
GGACGACCGGCTGCTGGCGCTGGTGAAGGCGGGGATGGACGTGGTGGTGGCCGTGGGGCTGCTGCAGCTGGCGCCCAAGA
AGGTCACCCCCAGGGTCACCGGGGCCTTCGGCTTCGTCACCTCCCTCATCTCCTGCTACCAGGTATACTCCTACTAAACT
TCACTGACAAACAAACCTGCA-TTGGCTCCGTTTTGTTCTTGTGACAGTTCTGAATTGTATTCCATCCCATGCTCTGTTT
GTTTCCCTTCAGCAACTCCCGTCTCGGGCTCCCCTGGCCAAACTCAAGGCGTGA--------------------------
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-------------------------------------------
>chr4B_1_TraesCS4B01G355100
ATGTTGGGTCG-GGAGGCCAGCGTGGGCG-GGTCCGACGTGGCGGGCGCCCCATATCCACCCCATATTTGGGCTAGATAT
GGGGAGTGCCGGTCCGGCCAGACGTTTGAGGGCCGTTTGTGGGTCTCGTCTAGGCCAAAAAACCATGACAAGA-------
---------------GCCCGATCATATGAGGCGGGTTTGAGGCGTCCGGTTGTTGATGCTTTAAGGTTTGAGAAGACGTA
GGGAAAGTCAAAATTTAAGAGGGTCGATTAGAGATGCCTTGAGCGCTTGCATAT-AACTCCAGCCCACACACGAATTATC
TACCGCTAAATCCATTCACGGCCTGGTGTCGTGTGGGCACAGCCACACGCATGGCAGGGCTAAAATCCAAACCCGTCCGC
CTCTCATCAGCCGGAGGTGAGGGAGCCAGCCCCGTCCGTCCCTCCACGGCTCATCCCCTCTCAGTCCACACAAAAATCGG
AT--------GCAGTAGCAGCCGGAGAAGCAGTTCCCCTCCGCAGCAGCTAGGC----CACCAGCCGG------CCGCCC
CTTCTCCATCCTCCTCCCCTCGCCCAGCTCCGTCATTAGCAAGGTAATCTTCGGCTC-----------------------
----------------------GCGTCCCATGCCAGCTTGTGTAGCCATGCCTGCTGCCTGATTTCGTAGTGATGCAGTA
TTGCAATGCGCTCCTGAGCTGGCTGTTTCAGAATTATAGCTTAGCCTCTCTGCATCTCCCGGCCTGCTCACTCACTTCTG
TTTT-AGTTCCTAGCTTTCTTTTCGAGAAATTACACCTAC--TTGCCAAGAGAAATTGTCGATGGTAGGAGTAGGAGA--
----TTATAAGCTGTTGCCTGCTTCGGCGTTTGGAGTTCTGAATTTTGTTGTCAGCCGCG-----------GTAGAAGAT
TGTAAGCTCTGCTCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGTCTTCTGAATTTCGAACTGC
TTCAGATCGAGTTCAGAAGAGGTTTCACACGTAGTAGTACTAGAAGACTGCCATGAAAATCTGGTTGAATTTCGTGCC--
-ATTAATTTACAAGTTGGGAGCGCAGGAAGGAAGATGTGCTCGTTGGAGGCGACGCGGGCGGAGCTGGGGCTGGCGGTGC
TGTACCTGAACAAGGCGGAGGCTCGGGACAAGATCTGCAGGGCCATCCAGTACGGCTCCAAGTTCATCAGCAACGGCCAG
CCCGGCACCGCGCAGAACGTCGACAAGTCCACCACCTTGGCTCGCAAGGTCTTCCGCCTCCTCAAGGTCAGTCCACCACC
TTGG----AGTACCATTATAATCTGCTCCATGTAGGCTGCAGTTGTGTTAAATTGGTTTTGGCCCTGACTCGATCGATCT
GCGATTCTGCAGTGGGTGAACGATCTGCATGCTCTCATCAGCCCAGCCCCCAAAGGGACCCCTCTCACACTCGTCTTGCT
TGGGAAGGTAGGTACTCTATTCATTTTAGTACCTGTGTTAATTTTTCACTAACAAGAAACCCCTTTGAGTAAGGCTGTCA
GAATGATATTCTCACTGTCTGTGA------------CTGCAGTCTAAGAATGCGCTGCTGTCGACCTTCCTGTTCCTGGA
CCAGTTCGTGTGGATAGGAAGATCAGGGATATACCAGGTTGGTTCGTTGCCGAGATTCAAGCGTCTCGCCCTCTAA-AAT
GGTCCACTCCAACGACTATAGTA--------ATTGGTTAGCAACTTGTGAAATGTAATTTGAAT-TTC-TGCTGTTGCTG
GTATATATATATATG--TAGAACAAGGAGCGCACGGACCGCATCGCCAGGATATCCCTCTACTGCTGGATGGCCTCCTCT
GTCTGTGCAAGCCTAGTCGAGGTACGTACTAGGCACAATAGTGTTTCATCTCATGGAAACTCCTATGATATGTCC-----
------------ATGACTGATCTTTTGAGTGGGATCGC--AGCTTGGGGAGCTCAAGAGGCTATCGAAGGCGATGAGGAA
GCGCGCCAAGGAGCTCAGGGGCGCCGACAAATACGAGGTACGGTATCATTTTAAATCTGCCACCCACGAAGATGTATTTT
AAAATTTTAACATAATG-----TGCTGTGCTTTGTGATCTTCTCACAGGACGAGCAGTACCTGGGGAAGATGAAGCAGTC
GGACGACCGGCTGCTGGCGCTGGTGAAGGCGGGGATGGACGTGGTGGTGGCCGTGGGGCTGCTGCAGCTGGCGCCCAAGA
AGGTCACCCCCAGGGTCACCGGGGCCTTCGGCTTCGTCACCTCCCTCATCTCCTGCTACCAGGTATACTCCTACTAAACT
TCACTGACAAACAAACCTGCA-TTGGCTCCGTTTTGTTCTTGTGACAGTTCTGAATTGTATTCCATCCCATGCTCTGTTT
GTTTCCCTTCAGCAACTCCCGTCTCGGGCTCCCCTGGCCAAACTCAAGGCGTGAGCAATCGCGAGGAACGCTACACCGCT
----CTGCTCCACAGTCCGCCTCCACTTAATTGGAGTCGGTGCTGTGCTCGAGCATGGAATCCGAGATGCTTTATTCCTG
TGTACGTAGCAG----TATAGAATGATGATGTCGATCATCTGTACGTACGGTTTTCATACATATACATGTACACGGTA--
TGCTATGAACAGTACTAATGGACATGGTATGTATGGTCGATCATGTGTTCGTGCATGGTGCTTATG---TAGGCCAACAG
TGTTGGCACTTGCGAACCAAAGGTAATAATTAAGTACACGGAGAGTACTCCCTCTGTTCGGAAATATTTATCCTAAAAAT
GGTTTAAAATGGATGTATCTATAACTAAAATAAGTCTAGATACAACCATTTCTAGAACAGGTATTTCCGCACGGAAAGAG
TAC-----------------------------------------------------------------------------
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-----------------------------------------------------------GTATTAAACAGAAGAACCTTT
CCGTGCGCGCCGCACACCGTGGATATATGGTTCGTGATGCACTTTGGATGTACCCTTAAGCACGGCACGCCGCCAAAGGG
AACTTTTGGAGTAGGAGCACTATACATGCTTGACGTACAGTCGCCGGCGGCCGGCCGGCCAAAAGGCGACGCACGGCCAA
CCGCCGATGCACTTGGCCGCCAAACTGAGTGAGTGAGAGGCTAATCATGGCGATCGCC-------TGATGGGTCGGCCGG
GCGCACGCGTGCAAGTGCAAGCCGGGATTTTCTTTGGTTCCCCATCGCGCGTGCTCCACTATCGCACTAATCTAGTCGTA
ACGCTCTCATCATT--------------C-----------ATACTATCACAGTATCAC--ACACGCACGCGCAGGATCAT
ATCGAACGGTGGTCCCGATCACTGCAAC-AACGCAATCATCCAGCTCTGTCTCCGA-----AAGCTCGGGAACCAAATGA
GAGCGCGGGACAGTAGTAGCCATGTTAAGAAGCCCGTCATCATTTTTGAAGCTGTTCCATCACAAGATCTCTGGATTTGA
CATGTTTTTTTTTCTTCGGTTAGCCTAGCAATCAACGGTCTTA
>chr4D_1
ATGTTGGGTCGAGGGGGCCAGCATGGGCCAGGTCCGACATGGCGGGCGCTCCATATCCGCCTCATATTTGGGCAGCATAT
GGAGGGTGCCGGTCAGGCCGGGCGTTTGAGGGCCGTTTGTGGGTCTCGTCTGGGTCAAAAAATCGTGATAAGAGCGGACA
GTGACCAGGCGGTCCGCCCGACCATATGAGGCGGGTTTGAGGCGTCCGTCTGTAGATGCTCTAAGGTTTGAGAAGAC---
--------CAAAATTTAAGAGGGTCGATTAGAGATGCCTTGAGCGCTTGCATAT-AAATCCAGCCCACACACGAATTATC
TAGCGCTAAATCCATTCACGGCCTGGTGTCGTGTGGGCACAGCCACACGCATGGCAGGGCTAAAATCCAAACCCGTCCGT
CTCTCATCAGCCGGAGGAGAGGGAGGCAGCCCCGTCCGTCCCTCCACGGCTCATCTCCTCTCAGTCCACACAAAATCGGA
TGGTGAAGCAGCAGTAGCAGCCGGAGAAGCAGTTCCCCTCCCCTCCCCAGCAGCTAAGCACCAGCCGGCCGGACCCGCCC
CTTCTCCACCCTCCTCCCCTCTCCCCGCTCCGTCATTACCAAGGTAATTGCACTGCCCAGCATGCATCTTCGTCTTAATC
CACTCTATCGGTGCTTCGTCTTGCGTCCCGTGGCAGCCTGTGCCGCCATGCCTGTTGCCTAATTTCCTACTGATGCAGTA
TCGCAATGCACTCCTGAGCTGACAGTTTTAGA-TTTTAGCAAGTGC-CTGTGCATCTCCCGGCCTGCTCACTCGCCTCTG
TTTTGAGTTCCTAGCTTTCTTTTCGAGAAATTACACCCTGCTTTGCCGACAGAGATTCTCGCTGCTAGTACGAGATTAT-
TTATTTATAAACTGATGTCTGCTTCGGCCTCTGCTTTTCTGAATTTTGTTGCCACGCGTAGTACAGTAGTACTGGAAGAT
TGCAAGCTCTGGTTTTCTGAATA---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTCGAGCTGC
TTCAGATCGAGTTCAGAAGTTTTTC----------------------------------------TGAATTCCGTGCCAT
TATTAATTTGGAAGTTGAGAGCGCAGGAAGGAAGATGGGCTCGTTGGAGGCGACGCGGGCGGAGCTGGGGCTGGCGGTGC
TGTACCTGAACAAGGCGGAGGCTCGGGACAAGATCTGCAGGGCCATCCAGTACGGCTCCAAGTTCATCAGCAACGGCCAG
CCCGGCACCGCGCAGAACGTCGACAAGTCCACCACCTTGGCTCGCAAGGTCTTCCGCCTCCTCAAGGTCAGCTCGCTCAC
GCACATACAGTACCATTATAATCTGCTCCATGTAGGCTGCAGCTGTGTTAATTTCGTTTTGGCCTTGCATCGATGGATCT
--------GCAGTGGGTGAACGATCTGCACGCCCTCATCAGCCCGGCCGCCAAAGGGACCCCTCTCACGCTGGTCTTGCT
TGGGAAGGTA----CTCTATACTTTATACCGCG----TTAATTTCTTA------------CCGTTTGAGTGAGGCTGTAA
GAATGATGTGCTGACTGTTAATTGTTTCTGAAACTGCTGCAGTCCAAGAATGCGCTGCTGTCGACTTTCCTGTTCCTGGA
CCAGTTCGTGTGGCTAGGAAGATCGGGGATTTACCAGGTTTTGT--TTGCCGAGATTTAAGCGTCTCACCCTCTTCCAAT
GGTCCACTCCATTCCATCGTGCATAGTACGTATTGATTAGCAATATGTGAACCTGGTTTTTCTTCTTC-TGTTGTTGCTG
G------------TG--TAGAACAAGGAGCGCACGGACCGCATCGCCAGGATGTCCCTCTACTGCTGGATGGCCTCCTCC
GTCTGTGCAAGTCTAGTCGAGGTACATATATATGCACAA----TTTCATCTCATGGAGACTCCTTGTAACATGCTA----
---CATGAGTATATGACTGATCGTTTGAGTGGGATTGC--AGCTTGGTGAGCTCAAGAGACTATCAAAGGCGATGAGGAA
GCGCGCCAAGGAGCTTAGGGGCGCCGACAAATACGAGGTACAGTATCATTTTAGATCTGCCGCCCACGGACGATGTATGT
GAAATTTTAACATAATT-----TGGTGGTCTTGT------------AGGACGAGCAGTACCTGGGGAAGATGAAGCAGTC
GGACGACCGGCTGCTGGCGCTGGTGAAGGCGGGCATGGACGTGGTGGTGGCCGTGGGGCTGCTGCAGCTGGCGCCCAAGA
AGATCACCCCCAGGGTCACCGGGGCCTTCGGCTTCGTCACCTCCCTCATCTCCTGCTACCAGGTATG------CCAAACT
TCACTGACCAATAAACCTCGCCTTCGCTCTCTTCTGTTCTTCTGACGGCTCTGAATTTTATGCTC--------------T
GTTTCTCTTCAGCAACTCCCGTCCCGCGCTCCCCTGGCCAAACTCAAGGCGTGAGGAACGG------ACGCTACACCATG
CATGCTAGTCCAGATGCTGCCTCCGCTTAACTCAAGCCGATGCTGTGCTCCAGCATGGAATCCGAGATGTTTTATTCCTG
TGTACGTAGCAG----TATAGAATGATGATGTCGATTGTCTGTACGTACGGTTTTTATACATATACATGTACACGGTATA
TGCTATGAATAGTAGTAATGGACATGGTATGTCTGGTCGATCATGTGTTGGTGCATGCTGCTTATA---TATGCCAACAG
TGTTGCCACTTGCGAACCAAAGGTAATAAGGACAGAGAGAGAGAGTACGCAGAGGTAATTCATTCGTGGCTCCCATATCA
TCACGGCCCCCGCGTCGCTCCCGCAGGGGCAACTCGGGCGGCGTAACCCTAGCCCGCTGCCGGCCCTCTCCCCCACCTCT
CCTCTCCCTCGTTGCCATCGGAGGTGGCCGCCGGCTCGCCGCTCGGCCGTCGGTGAAGGTGGCGGCGAGGATCTGGCCGC
CCCATTCTTCCTCGGGGGGCTTTGGATCCGTGGTGGCGGTCTCGGCTGGTGAATCGACGGCGGGTCTGCGGTGACCGGTG
CTCGTTGGTGCTGGCCGTTCTTCCTCGGTCGCGGGGGCGGCGAGGCGGCGGCAGGTGGCGGCTGTGGTGCGGGCGTCTCG
GCGGCGCCCGATCCAGATCTGAAGGCCTCCGTTTACTTCAACCAGGGCTGCCTCTGATGGTCCTACTTTGGGTGGCCTTT
ATCGTCGGAGTTGTACCTATTTGGCGGCTGGAGGTGGGAGGTGGCTCCGGAGAAATCCGAGGCCAACAGTGCTGGCCATG
ACGGCGGCGACGCCCGAGGGCGCCGTACCCTTCTTGTAGGCGCCGTCCAGGTTGCCTCCTTCCCCTCTTCCTTCCACCCA
GCTCGTATGCCGGGCGAAAGCCCGAATCCTTGCCGGATCGAGCGACAGCGGCGCTCCGGGCGTCGTCACCCTCTTGCGGG
TGTCGTTCGTGGTGAGCTTGGGGTGGATGTGATGCTTTGGTTGCTTGGTGGCGGTTGGTGGCGTGGTCGGAGTTCGTCTG
GTGGCGGTGCGTTGGCGCTCTGCCGCCTATGTGCTCAGCCTCGGAGTCCTTCTTCCACGGTGCTTGGTCTTCAGCAGCCC
TGCCGGACTCGGCGGAGCGGTGCTTCATCCTACTCATTGATGGCGGCGTATCTCGGCGGCGTGGCGCAGTGGAGATTCGG
CGTCCGATGTGTGGCGATGGACTCACGCAGGAGGACGATGTTGTCTGGTGTCGTGGTGACGTTGATGGCTGAGTGGCCAG
ACAAGGTAGAAGCCTCAATATTTGCTCTGAAGACGGACCTGTGAAAGATGGCGGCGACGACACACATGTGCGTCGGACCG
GTTTGTACCCCAGACCCGGTATGTGGCTCGGCTGGGGCTTCCGGCTTTTGATGTTAGGCTTAGGTGAGTGGTCTGGGTAG
TAGCCCAGCTAGCACCCCTTCATCATTTTGATGTTAGGCTTAGATGAGTGGTCTGGGTAGTGGCCCAGCTAGCACAGCTT
CATCATTTGGATAGGAGTAGCGGCAAATGTTGCCAAGATGGCGGATTCACGCATATTGTTGTAATACTTTGTAAGGTTCC
AGATGCAGAGGCCGGGGGTCATCCTCCTTTTAAAAAAAAAGAGAGAGAGTACGTACGTAGTATTAAACAGAAGAACCTTT
CTGTGCGCGCCGCGCACCGGGGATATATGGTTCGTGATGCACTTTGGATGTACCCTTCAGCACGGCACGCCGCCAAAGGG
AACTTTTGGGGTAGGAGCACTATATATGCTTGACGTACAGTCGCCGGCGGCCGGCCGGGCTAAAGGCGACGCACGGCCAA
CCGCTGATGCACTTGGCCGCCAAACTGAGTGAGTGAGTGGCTAATCATGGCGATCCCC-------TGA---GTCGGACGG
GCGCACGCGTGC-------AGCCGGGATTTTCTTTGGTTCCCCATTGCGCGTGCTCCACTATCGCACTAATCTAGTCGTA
ACGCTCTCATCATT--------------CGTGTCATCCGCATATTATCACAGCATCACGAACACGCACGCGCGGGATCAT
ATCGAAGCGTGGTCGCGATCACGGCAACAAACGCAATCATCCAGCTCTGTTTCGAAAAGGGAAGGTCGGGAACCAAATGA
GAGCGCGGGAAAGTAGTAGC------------------------------------------------------------
-------------------------------------------
>chr5A_152
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GCCCGAACATATGAGGCGGGTTTGATGCGTCCGGCTGTAGATGCTCTAAGGTTCGGGAAGACATA
GGGAAAGGCAAAATTTAAGAGGGCCGATTAGAGATGCCTTGAGCGCTTGCATATAAACTCCAGCCCACACACGAATTATC
TACCGCTAAATCCATTCACGGCCTGGTGTCGTGTGGGCACAGCCACACGCATGGCAGGGCTAAAATCCAAACCCGTCCGT
CTCTCATGAGCCGGAGGAGAGGGAGGCAGCCCCGTCCGTCCCTCCACGGCTCATCTCCTCTCAGTCCACACAAAATCGGA
TGGTGAAGCAGCAGTAGCAGCCGGAGAAGCAGTT-----CCCCTCCCCAGCAGCTAAGCACCAGCCGGCCGGACCCGCCG
CTTCTCCACCCTCCTCCCCTCTCCCCGCTCCGTCATTACCAAGGTAATTGCACTGCCCAGCATGCATCTTCGTCTTAATC
CATTATTACATCGGT--------------GTGCCAGCTCGTGTAGCCATGCCTGTTGCTTAATTTCCTACTGATGCAGTA
TCGCAATGCACTCCTGAGCTAACAGTTTCAGATTTTTAGCAAGTGC-CTGTGCATCTCCCGGCCTGCTCACTCGCCTCTG
TTTTGAGTTCCTAGCTTTCTTTTCGAGAAATTACACCCTGCTTTGCCGACAGAAATTCTCGATGCTAGTATAGTAGGAGA
TTATTTATAAGCTGATGTCTGCTTCGGCCTCTGCTTTTCTGAATTTTGTTGTCACGCGTAGTACAGTACAAGTAGAAGAT
TGTAAGCTCTGGTCTTCTGAACATTCCAGCTGCTTCAGATCGAGTTCACAAGTTACCACACCATTCACACGTACTAGAAG
GCTGCCATAAAATCTGGTTGTCTTTCTGAATTTCTTGCCATTGATTTACAAGTTGTCTTTCTGTATTTTGTTGTCTGGTT
CAGCCTCTGGTTTTCTGAATTTTGTTGTCGCACGTGGTAGAAGATTGCAATAAGCTCTGGTCTTCTGAATTTCGAGCTGC
TTCAGATCGAGTTCAGAAGTTACGACGCGTACAAGACTGTAAGCTCTGGTTTTATGAATCTTC-----------TGCCAT
TATTAATTTGGAAGTTGTGAGGGCAGGCAGGAAGATGTGCTCGTTGGAGGCGACGCGGGCGGAGCTGGGGCTGGCGGTGC
TGTACCTGAACAAGGCGGAGGCTCGGGACAAGATCTGCAGGGCCATCCAGTACGGCTCCAAGTTCATCAGCAACGGCCAG
CCCGGCACCGCGCAGAACGTCGACAAGTCCACCACCTTGGCTCGCAAGGTCTTCAGGCTCCTCAAGGTCAGCCCGCCTGC
ACATG-------CCATTATGATATGCTCCTTGTAGGCTGCAGCTGTGTTAAATTGGTTTTGGCCCTGAATCGATCGACCT
GC--------AGTGGGTGAACGACCTGCATGCTCTCATCAGCCCAGCCCCCAAAGGGACCCCTCTCGTGTTGGTCTTGCT
TGGGAAGGTA----CTCTATACTTTATAGCGCA----TTAATTTCTCA------------CCGTTTGAGTGAGGCTGTAA
GAATGATGTGCTGACTGTTAATTGTTTCTGTAACTTGTGCAGTCCAAGAATGCGCTGCTGTCGACCTTCCTGTTCCTGGA
CCAGTTCGTGTGGATAGGAAGATCGGGGATTTACCAGGTTTTGT--TTGCCGAGATTTCAGCGTCTCACCCTCCAA---T
GGTTCACCCCGTTCCATCGTGTATA----GTATTGATTAGCAATCTGTGAACCTAGTTTTTCTTCTTCCTGTTGTTGCTG
G------------TATATAGAACAAGGAGCGCACGGACCGCATCGCCAGGATATCCCTCTACTGCTGGATGACTTCCTCT
GTCTTTGCAAGTCTAGTCGAGGTACGTATATTATATTGCAGGGCAGGAGTAAGTTCTACCAAGTTTCTTAGAGATAGATA
GCCCATGAACATATAGCTGACGATTTGCGTGGGATTGCGCAGCTTGGAGAGCTCAAGAGGCTATCCAAGGCGATGAGGAA
GCGCGCCAAGGAGCTCCGGGGTGCCGACAAATACGAGGTAAGTACATACGTAATTGGTATCTCACTGATCATACCGTCCG
TAGAGCATAAGAACCTGAACTTTGCTGTGCTTTGTGATCTTTTCCCAGGACGAGCAGTACCTGGGGAAGATGAAGCAGTC
GGACGACCGGCTGCTGGCGCTGGTGAAGGCGGGCATGGACGTGGTGGTGGCCGTGGGGCTGCTGCAGCTGGCGCCCAAGA
AGGTCACCCCCAGGGTCACCGGGGCCTTCGGCTTCGTCACCTCCCTCATCTCCTGCTACCAGGTATG------CCAAACT
AAACTCACCAATAAACCTCG-----------------TCTTCTGACGGCTCTGAATTTTATGCTC--------------T
GTTTCTCTTCAGCAACTCCCGTCCCGCGCTCCCCTGGCCAAACTCAAGGCGTGAGTAACGG------ACGCTACACCATG
CATGCTAGTCCAGACGCTGCCTCCGCTTAACTCAAGCCGATGCTGTGCTCGATCATGGAATCTGAGATGTTTTATTCCTG
TGTACGTAGCACTATATATAGAATGATGATGTCGATCGTCTGTACGTACGGTTTTTATACATATACATGTACACGGT--A
TGCTATGAACAGTACTAATGGACATGGTATGTATGGTCGATCATGTGTTAGTGCATGGTGCTTATAGTATATGCCAACAG
TGTTTGCACTTGCGAACCAAATGTAATAATTACAGAGAGATCACATTTATATTAAACCAAATCTCAGTCGAGTGACATGC
CATGTAAGAAAGAAATAGAAAAATCTGAAAAGAAATTTTACATGGATCTCAATGTATCATCGACAAAATAGCATCAACTG
AGACATGATCAAATCTTAATCGACTAAGATTTAGCAAGACTTTGAAC---------------------------------
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-----------------------------------------------------------------------AGAACCTTT
CCGTGCGCACCGCACACCGTGC----ATGGTTCGTCATGCATTACGTACCCTTTAACCAA----GCACGCCGCCAAAGGG
AACTTTTGGGGTAGGAGAACTATATATGCTTGACGTACAGTCGCCGGCGGCCGGCCGGCCTAAAGGCGACGCACGGCCAA
CCGCTGATGCACTTGGCCGCCAAACTGAGTGAGTGAGTGGCTAATCATGGCGATCGATCGCCTGATGG---GTCGGCCGG
GCGCACGCGTGCAAGTGCAAGCCGGGATTTTCTTTGGTTCCCCATCGCGCGTGCTCCACTATCGCACTAATCTAGTCGTA
ACGCTCTCATCATCATTCATGCCATCCGC-----------ATATTATCACAGTATCAC--ACACGCACGCGCAGGATGAT
AGCGAACGGTGGTCGCGATCACGGCAACAAACGCAATCATCCAGCTCTGTTTCCAA-----AAGGTCCGGAACCAAATGA
GAGCTCGGGACAGTAATAGCCATGTTAAGAAGCTCGTCATCATTTTA-AAGCGGTTGCATCACTAGATTTCCGGATTTAA
CATGCTTTT----------------------------------
>SNPs
--------------S-------S-----S---------S----------S--------S--S-----------SSS----
--S-S---------S----S-S-----------------------------S--S-------S-S---S-----------
---------------------S---------------------------S---S------S----------------S--
-------S------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-----------------S-------S-----------------------------S-------------------SSS-S
SS---------------------------------------S-SS-SSSSSS----------------------------
--------S------------S---S------------S---------SSSSSSSS------------------------
-----------------------------S------------------------S-----S-----S--S----------
-S-------S-----------S-S--------S--S----SSSSS-S--S-----------------------S-S----
-------------------------------------SSS-------S-S-------S------S---S-SS--SS----
--------------S--S----------S-S--SSS------------------SS--SS--------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------SSS--S-S-SSSS-SS-S-SSS--SSSSSSSSSSSSS--SSS-SSS------S--------
---------SS------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--S--SS-
SSSS--------------------------------------S-------------------------S-----------
--SSSSSS------------------------------------------------------------S--S--------
----------SSSS------S-S--S---SS-SSSSS-------S---SSSSSSSSSSSS--S-------S-------S-
-------S-S--S-----SSS-SS--------------------S-----------------------------------
------------------------S-----S---------SSS-SS-----------S---------S------------
-----------SSSSS-SSS---------------S-------SS------SSSSSS---SSS--------S--------
-SSSSSSSSSSSS-------------------------------------------------------------------
-----------S----------------SSSSSS-SS-S--S----------------------S-S---SSS-S-----
----------------------S------------S-----------S-----------------S--------------
-----------------------------------------------------S-------S------S-SSSSSS--S-
S----------------------------------------S--S-----------------------------------
---------------------------------S----------------------------------------------
------------------------------------------------------------------SSSSSSS-S-----
--------S--S------SSS---S----SS--S-------S----S-S--------S---S-SSSSSSSSSSSSSSSS-
-----S-----------------S--S----------------------------S--SS-SSSSSS----------SSS
------SS----S-SS-S------S-----S-SS--S--S-----------------------------S----------
-------------------------------------S-----------------S------------------------
-------------------------------------------------S---------------S-----S--------
--------------------------------SSS-S-SS--------S-SS-SSSSSSSS-SSS---SS---S-S-SSS
SS-S---S-SS--SS--SSS-S-S--S---S--SSS-SS-S-SS-S-S--SS-SS-S--SSS-SSSS-S-S-SS---SS-
SSS-----------------------------------------------------------------------------
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---------------------------------------------------------S----------------------
---------S--------------S-----------------------------------S-------------------
----S--------------------------------S------------------------------SSS---------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------S-------S---------------------------S---S---------S---------------
---------------------------------S------------SS----S---S------S----S--S------S-
----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_132
--------------------------------------------------------------------------------
--------------------------------CCGTTTGTGGGTCTCGTCTA----------------------------
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>reverse_1669
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--------------------------------------------------------------------ACTCGTCTTGCT
TGGGAAGG------------------------------------------------------------------------
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>forward_1519
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-----------------------------------------------------------CCTCAAGGTCAGTCCACCAC-
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-------------------------------------------
>reverse_3107
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------------------------------------------------------------------CCGCACGGAAAGAG
TACGTA--------------------------------------------------------------------------
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-------------------------------------------
