Multiple sequence alignment - TraesCS4B01G349400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G349400 chr4B 100.000 2678 0 0 1 2678 642543091 642545768 0.000000e+00 4946.0
1 TraesCS4B01G349400 chr5A 90.869 1807 109 25 898 2678 680579914 680581690 0.000000e+00 2372.0
2 TraesCS4B01G349400 chr5A 87.552 241 24 4 667 901 680579266 680579506 9.450000e-70 274.0
3 TraesCS4B01G349400 chr5A 94.737 38 2 0 2419 2456 503509327 503509364 2.880000e-05 60.2
4 TraesCS4B01G349400 chr4D 93.037 1192 49 9 700 1863 499554400 499555585 0.000000e+00 1711.0
5 TraesCS4B01G349400 chr4D 89.593 663 61 3 2019 2678 499555821 499556478 0.000000e+00 835.0
6 TraesCS4B01G349400 chr4D 100.000 31 0 0 372 402 41718237 41718207 1.040000e-04 58.4
7 TraesCS4B01G349400 chr1D 82.301 226 30 2 371 594 494305112 494304895 1.270000e-43 187.0
8 TraesCS4B01G349400 chr7D 78.261 230 37 6 373 593 439241827 439241602 4.650000e-28 135.0
9 TraesCS4B01G349400 chr3A 78.378 185 33 7 370 550 706511771 706511952 2.180000e-21 113.0
10 TraesCS4B01G349400 chr3A 77.273 154 30 4 372 522 503716640 503716489 4.750000e-13 86.1
11 TraesCS4B01G349400 chr3A 75.521 192 31 9 372 549 503716233 503716044 2.210000e-11 80.5
12 TraesCS4B01G349400 chr3A 85.965 57 8 0 373 429 738194471 738194415 8.010000e-06 62.1
13 TraesCS4B01G349400 chr4A 73.504 234 53 8 371 600 523055480 523055708 2.210000e-11 80.5
14 TraesCS4B01G349400 chr4A 97.297 37 1 0 2420 2456 542528551 542528515 2.230000e-06 63.9
15 TraesCS4B01G349400 chr2B 100.000 38 0 0 2420 2457 646658895 646658932 1.330000e-08 71.3
16 TraesCS4B01G349400 chr1A 100.000 30 0 0 373 402 575451447 575451476 3.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G349400 chr4B 642543091 642545768 2677 False 4946 4946 100.0000 1 2678 1 chr4B.!!$F1 2677
1 TraesCS4B01G349400 chr5A 680579266 680581690 2424 False 1323 2372 89.2105 667 2678 2 chr5A.!!$F2 2011
2 TraesCS4B01G349400 chr4D 499554400 499556478 2078 False 1273 1711 91.3150 700 2678 2 chr4D.!!$F1 1978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.106268 TGCCCTTTGACCATGTGTGT 60.106 50.0 0.0 0.0 0.0 3.72 F
481 482 0.112995 AGCCTGAAACTTGCCATCCA 59.887 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1993 1.920835 GGTGGTGGCTTCCTCCTCT 60.921 63.158 11.2 0.0 37.97 3.69 R
1907 2356 2.315176 CACCAACCATGAAGAACCCAA 58.685 47.619 0.0 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.003763 AGAAGACGTGGGGCTCCC 61.004 66.667 0.00 0.72 45.71 4.30
27 28 4.745116 GGGCTCCCCAAAGACTTC 57.255 61.111 0.00 0.00 44.65 3.01
28 29 1.767692 GGGCTCCCCAAAGACTTCA 59.232 57.895 0.00 0.00 44.65 3.02
29 30 0.112412 GGGCTCCCCAAAGACTTCAA 59.888 55.000 0.00 0.00 44.65 2.69
30 31 1.272704 GGGCTCCCCAAAGACTTCAAT 60.273 52.381 0.00 0.00 44.65 2.57
31 32 2.025321 GGGCTCCCCAAAGACTTCAATA 60.025 50.000 0.00 0.00 44.65 1.90
32 33 3.373110 GGGCTCCCCAAAGACTTCAATAT 60.373 47.826 0.00 0.00 44.65 1.28
33 34 4.281657 GGCTCCCCAAAGACTTCAATATT 58.718 43.478 0.00 0.00 0.00 1.28
34 35 4.711846 GGCTCCCCAAAGACTTCAATATTT 59.288 41.667 0.00 0.00 0.00 1.40
35 36 5.163509 GGCTCCCCAAAGACTTCAATATTTC 60.164 44.000 0.00 0.00 0.00 2.17
36 37 5.654209 GCTCCCCAAAGACTTCAATATTTCT 59.346 40.000 0.00 0.00 0.00 2.52
37 38 6.153510 GCTCCCCAAAGACTTCAATATTTCTT 59.846 38.462 0.00 0.00 0.00 2.52
38 39 7.310052 GCTCCCCAAAGACTTCAATATTTCTTT 60.310 37.037 6.93 6.93 38.55 2.52
39 40 8.491045 TCCCCAAAGACTTCAATATTTCTTTT 57.509 30.769 9.24 0.00 36.40 2.27
40 41 8.585018 TCCCCAAAGACTTCAATATTTCTTTTC 58.415 33.333 9.24 0.00 36.40 2.29
41 42 7.819415 CCCCAAAGACTTCAATATTTCTTTTCC 59.181 37.037 9.24 0.00 36.40 3.13
42 43 8.588472 CCCAAAGACTTCAATATTTCTTTTCCT 58.412 33.333 9.24 0.00 36.40 3.36
43 44 9.987272 CCAAAGACTTCAATATTTCTTTTCCTT 57.013 29.630 9.24 0.00 36.40 3.36
49 50 9.899226 ACTTCAATATTTCTTTTCCTTCTTTCG 57.101 29.630 0.00 0.00 0.00 3.46
50 51 9.346725 CTTCAATATTTCTTTTCCTTCTTTCGG 57.653 33.333 0.00 0.00 0.00 4.30
51 52 8.630054 TCAATATTTCTTTTCCTTCTTTCGGA 57.370 30.769 0.00 0.00 0.00 4.55
52 53 9.243105 TCAATATTTCTTTTCCTTCTTTCGGAT 57.757 29.630 0.00 0.00 0.00 4.18
53 54 9.860898 CAATATTTCTTTTCCTTCTTTCGGATT 57.139 29.630 0.00 0.00 0.00 3.01
99 100 8.793592 TCTAATTTAGAGTTTTCTGCCTTTTCC 58.206 33.333 1.90 0.00 34.79 3.13
100 101 6.976934 ATTTAGAGTTTTCTGCCTTTTCCA 57.023 33.333 0.00 0.00 34.79 3.53
101 102 5.767816 TTAGAGTTTTCTGCCTTTTCCAC 57.232 39.130 0.00 0.00 34.79 4.02
102 103 3.631250 AGAGTTTTCTGCCTTTTCCACA 58.369 40.909 0.00 0.00 30.72 4.17
103 104 3.381590 AGAGTTTTCTGCCTTTTCCACAC 59.618 43.478 0.00 0.00 30.72 3.82
104 105 3.096092 AGTTTTCTGCCTTTTCCACACA 58.904 40.909 0.00 0.00 0.00 3.72
105 106 3.513515 AGTTTTCTGCCTTTTCCACACAA 59.486 39.130 0.00 0.00 0.00 3.33
106 107 4.020662 AGTTTTCTGCCTTTTCCACACAAA 60.021 37.500 0.00 0.00 0.00 2.83
107 108 4.543590 TTTCTGCCTTTTCCACACAAAA 57.456 36.364 0.00 0.00 0.00 2.44
108 109 4.543590 TTCTGCCTTTTCCACACAAAAA 57.456 36.364 0.00 0.00 0.00 1.94
109 110 4.751767 TCTGCCTTTTCCACACAAAAAT 57.248 36.364 0.00 0.00 0.00 1.82
110 111 5.860941 TCTGCCTTTTCCACACAAAAATA 57.139 34.783 0.00 0.00 0.00 1.40
111 112 6.418057 TCTGCCTTTTCCACACAAAAATAT 57.582 33.333 0.00 0.00 0.00 1.28
112 113 6.222389 TCTGCCTTTTCCACACAAAAATATG 58.778 36.000 0.00 0.00 0.00 1.78
113 114 5.923204 TGCCTTTTCCACACAAAAATATGT 58.077 33.333 0.00 0.00 0.00 2.29
114 115 5.988561 TGCCTTTTCCACACAAAAATATGTC 59.011 36.000 0.00 0.00 0.00 3.06
115 116 5.988561 GCCTTTTCCACACAAAAATATGTCA 59.011 36.000 0.00 0.00 0.00 3.58
116 117 6.650390 GCCTTTTCCACACAAAAATATGTCAT 59.350 34.615 0.00 0.00 0.00 3.06
117 118 7.360269 GCCTTTTCCACACAAAAATATGTCATG 60.360 37.037 0.00 0.00 0.00 3.07
118 119 7.118101 CCTTTTCCACACAAAAATATGTCATGG 59.882 37.037 0.00 0.00 37.70 3.66
119 120 6.907853 TTCCACACAAAAATATGTCATGGA 57.092 33.333 0.00 6.05 40.97 3.41
120 121 7.479352 TTCCACACAAAAATATGTCATGGAT 57.521 32.000 9.55 0.00 41.67 3.41
121 122 8.586879 TTCCACACAAAAATATGTCATGGATA 57.413 30.769 9.55 0.00 41.67 2.59
122 123 8.586879 TCCACACAAAAATATGTCATGGATAA 57.413 30.769 0.00 0.00 39.22 1.75
123 124 9.199645 TCCACACAAAAATATGTCATGGATAAT 57.800 29.630 0.00 0.00 39.22 1.28
124 125 9.251792 CCACACAAAAATATGTCATGGATAATG 57.748 33.333 0.00 0.00 38.22 1.90
125 126 9.806203 CACACAAAAATATGTCATGGATAATGT 57.194 29.630 0.00 0.00 37.56 2.71
139 140 9.729023 TCATGGATAATGTTTTTAGCATAAACG 57.271 29.630 0.00 0.00 38.11 3.60
140 141 8.967218 CATGGATAATGTTTTTAGCATAAACGG 58.033 33.333 0.00 0.00 38.11 4.44
141 142 8.057536 TGGATAATGTTTTTAGCATAAACGGT 57.942 30.769 0.00 0.00 38.11 4.83
142 143 8.524487 TGGATAATGTTTTTAGCATAAACGGTT 58.476 29.630 0.00 0.00 38.11 4.44
143 144 9.361315 GGATAATGTTTTTAGCATAAACGGTTT 57.639 29.630 11.33 11.33 38.11 3.27
146 147 8.426881 AATGTTTTTAGCATAAACGGTTTTGT 57.573 26.923 11.87 0.00 38.11 2.83
147 148 9.530633 AATGTTTTTAGCATAAACGGTTTTGTA 57.469 25.926 11.87 0.00 38.11 2.41
148 149 8.922058 TGTTTTTAGCATAAACGGTTTTGTAA 57.078 26.923 11.87 8.29 38.11 2.41
149 150 9.362539 TGTTTTTAGCATAAACGGTTTTGTAAA 57.637 25.926 11.87 12.26 38.11 2.01
153 154 9.968870 TTTAGCATAAACGGTTTTGTAAAATCT 57.031 25.926 11.87 4.68 0.00 2.40
154 155 9.615295 TTAGCATAAACGGTTTTGTAAAATCTC 57.385 29.630 11.87 0.00 0.00 2.75
155 156 7.653647 AGCATAAACGGTTTTGTAAAATCTCA 58.346 30.769 11.87 0.00 0.00 3.27
156 157 8.303876 AGCATAAACGGTTTTGTAAAATCTCAT 58.696 29.630 11.87 0.00 0.00 2.90
157 158 8.921670 GCATAAACGGTTTTGTAAAATCTCATT 58.078 29.630 11.87 0.00 0.00 2.57
172 173 8.538409 AAAATCTCATTTACATGTTTTCTGGC 57.462 30.769 2.30 0.00 0.00 4.85
173 174 6.839124 ATCTCATTTACATGTTTTCTGGCA 57.161 33.333 2.30 0.00 0.00 4.92
174 175 6.012658 TCTCATTTACATGTTTTCTGGCAC 57.987 37.500 2.30 0.00 0.00 5.01
175 176 5.769662 TCTCATTTACATGTTTTCTGGCACT 59.230 36.000 2.30 0.00 0.00 4.40
176 177 6.012658 TCATTTACATGTTTTCTGGCACTC 57.987 37.500 2.30 0.00 0.00 3.51
177 178 4.481930 TTTACATGTTTTCTGGCACTCG 57.518 40.909 2.30 0.00 0.00 4.18
178 179 1.967319 ACATGTTTTCTGGCACTCGT 58.033 45.000 0.00 0.00 0.00 4.18
179 180 1.603802 ACATGTTTTCTGGCACTCGTG 59.396 47.619 0.00 0.00 0.00 4.35
180 181 1.603802 CATGTTTTCTGGCACTCGTGT 59.396 47.619 0.00 0.00 0.00 4.49
181 182 1.295792 TGTTTTCTGGCACTCGTGTC 58.704 50.000 0.00 0.00 35.37 3.67
182 183 0.586802 GTTTTCTGGCACTCGTGTCC 59.413 55.000 0.00 1.94 33.48 4.02
183 184 0.468226 TTTTCTGGCACTCGTGTCCT 59.532 50.000 0.00 0.00 33.48 3.85
184 185 0.468226 TTTCTGGCACTCGTGTCCTT 59.532 50.000 0.00 0.00 33.48 3.36
185 186 0.468226 TTCTGGCACTCGTGTCCTTT 59.532 50.000 0.00 0.00 33.48 3.11
186 187 0.468226 TCTGGCACTCGTGTCCTTTT 59.532 50.000 0.00 0.00 33.48 2.27
187 188 1.134220 TCTGGCACTCGTGTCCTTTTT 60.134 47.619 0.00 0.00 33.48 1.94
213 214 7.562454 TTTTTGAATTAGTCTCGTGTCCTTT 57.438 32.000 0.00 0.00 0.00 3.11
214 215 7.562454 TTTTGAATTAGTCTCGTGTCCTTTT 57.438 32.000 0.00 0.00 0.00 2.27
215 216 6.539649 TTGAATTAGTCTCGTGTCCTTTTG 57.460 37.500 0.00 0.00 0.00 2.44
216 217 5.607477 TGAATTAGTCTCGTGTCCTTTTGT 58.393 37.500 0.00 0.00 0.00 2.83
217 218 6.053005 TGAATTAGTCTCGTGTCCTTTTGTT 58.947 36.000 0.00 0.00 0.00 2.83
218 219 5.924475 ATTAGTCTCGTGTCCTTTTGTTG 57.076 39.130 0.00 0.00 0.00 3.33
219 220 3.536956 AGTCTCGTGTCCTTTTGTTGA 57.463 42.857 0.00 0.00 0.00 3.18
220 221 4.073293 AGTCTCGTGTCCTTTTGTTGAT 57.927 40.909 0.00 0.00 0.00 2.57
221 222 3.809832 AGTCTCGTGTCCTTTTGTTGATG 59.190 43.478 0.00 0.00 0.00 3.07
222 223 3.560068 GTCTCGTGTCCTTTTGTTGATGT 59.440 43.478 0.00 0.00 0.00 3.06
223 224 3.559655 TCTCGTGTCCTTTTGTTGATGTG 59.440 43.478 0.00 0.00 0.00 3.21
224 225 3.275143 TCGTGTCCTTTTGTTGATGTGT 58.725 40.909 0.00 0.00 0.00 3.72
225 226 4.443621 TCGTGTCCTTTTGTTGATGTGTA 58.556 39.130 0.00 0.00 0.00 2.90
226 227 5.060506 TCGTGTCCTTTTGTTGATGTGTAT 58.939 37.500 0.00 0.00 0.00 2.29
227 228 5.178623 TCGTGTCCTTTTGTTGATGTGTATC 59.821 40.000 0.00 0.00 0.00 2.24
228 229 5.616866 CGTGTCCTTTTGTTGATGTGTATCC 60.617 44.000 0.00 0.00 32.09 2.59
229 230 4.454161 TGTCCTTTTGTTGATGTGTATCCG 59.546 41.667 0.00 0.00 32.09 4.18
230 231 4.006989 TCCTTTTGTTGATGTGTATCCGG 58.993 43.478 0.00 0.00 32.09 5.14
231 232 3.756434 CCTTTTGTTGATGTGTATCCGGT 59.244 43.478 0.00 0.00 32.09 5.28
232 233 4.379394 CCTTTTGTTGATGTGTATCCGGTG 60.379 45.833 0.00 0.00 32.09 4.94
233 234 3.410631 TTGTTGATGTGTATCCGGTGT 57.589 42.857 0.00 0.00 32.09 4.16
234 235 3.410631 TGTTGATGTGTATCCGGTGTT 57.589 42.857 0.00 0.00 32.09 3.32
235 236 3.745799 TGTTGATGTGTATCCGGTGTTT 58.254 40.909 0.00 0.00 32.09 2.83
236 237 4.138290 TGTTGATGTGTATCCGGTGTTTT 58.862 39.130 0.00 0.00 32.09 2.43
237 238 4.023622 TGTTGATGTGTATCCGGTGTTTTG 60.024 41.667 0.00 0.00 32.09 2.44
238 239 2.486203 TGATGTGTATCCGGTGTTTTGC 59.514 45.455 0.00 0.00 32.09 3.68
239 240 1.240256 TGTGTATCCGGTGTTTTGCC 58.760 50.000 0.00 0.00 0.00 4.52
240 241 0.524414 GTGTATCCGGTGTTTTGCCC 59.476 55.000 0.00 0.00 0.00 5.36
241 242 0.402504 TGTATCCGGTGTTTTGCCCT 59.597 50.000 0.00 0.00 0.00 5.19
242 243 1.202952 TGTATCCGGTGTTTTGCCCTT 60.203 47.619 0.00 0.00 0.00 3.95
243 244 1.890489 GTATCCGGTGTTTTGCCCTTT 59.110 47.619 0.00 0.00 0.00 3.11
244 245 0.678950 ATCCGGTGTTTTGCCCTTTG 59.321 50.000 0.00 0.00 0.00 2.77
245 246 0.395862 TCCGGTGTTTTGCCCTTTGA 60.396 50.000 0.00 0.00 0.00 2.69
246 247 0.249280 CCGGTGTTTTGCCCTTTGAC 60.249 55.000 0.00 0.00 0.00 3.18
247 248 0.249280 CGGTGTTTTGCCCTTTGACC 60.249 55.000 0.00 0.00 0.00 4.02
248 249 0.827368 GGTGTTTTGCCCTTTGACCA 59.173 50.000 0.00 0.00 0.00 4.02
249 250 1.416030 GGTGTTTTGCCCTTTGACCAT 59.584 47.619 0.00 0.00 0.00 3.55
250 251 2.482864 GTGTTTTGCCCTTTGACCATG 58.517 47.619 0.00 0.00 0.00 3.66
251 252 2.114616 TGTTTTGCCCTTTGACCATGT 58.885 42.857 0.00 0.00 0.00 3.21
252 253 2.158986 TGTTTTGCCCTTTGACCATGTG 60.159 45.455 0.00 0.00 0.00 3.21
253 254 1.786937 TTTGCCCTTTGACCATGTGT 58.213 45.000 0.00 0.00 0.00 3.72
254 255 1.039068 TTGCCCTTTGACCATGTGTG 58.961 50.000 0.00 0.00 0.00 3.82
255 256 0.106268 TGCCCTTTGACCATGTGTGT 60.106 50.000 0.00 0.00 0.00 3.72
256 257 1.143889 TGCCCTTTGACCATGTGTGTA 59.856 47.619 0.00 0.00 0.00 2.90
257 258 2.224992 TGCCCTTTGACCATGTGTGTAT 60.225 45.455 0.00 0.00 0.00 2.29
258 259 2.164219 GCCCTTTGACCATGTGTGTATG 59.836 50.000 0.00 0.00 0.00 2.39
259 260 3.684908 CCCTTTGACCATGTGTGTATGA 58.315 45.455 0.00 0.00 0.00 2.15
260 261 4.078537 CCCTTTGACCATGTGTGTATGAA 58.921 43.478 0.00 0.00 0.00 2.57
261 262 4.156556 CCCTTTGACCATGTGTGTATGAAG 59.843 45.833 0.00 0.00 0.00 3.02
262 263 4.156556 CCTTTGACCATGTGTGTATGAAGG 59.843 45.833 0.00 0.00 0.00 3.46
263 264 3.348647 TGACCATGTGTGTATGAAGGG 57.651 47.619 0.00 0.00 0.00 3.95
264 265 2.026356 TGACCATGTGTGTATGAAGGGG 60.026 50.000 0.00 0.00 0.00 4.79
265 266 1.992557 ACCATGTGTGTATGAAGGGGT 59.007 47.619 0.00 0.00 0.00 4.95
266 267 2.290896 ACCATGTGTGTATGAAGGGGTG 60.291 50.000 0.00 0.00 0.00 4.61
267 268 2.368439 CATGTGTGTATGAAGGGGTGG 58.632 52.381 0.00 0.00 0.00 4.61
268 269 1.440618 TGTGTGTATGAAGGGGTGGT 58.559 50.000 0.00 0.00 0.00 4.16
269 270 1.777878 TGTGTGTATGAAGGGGTGGTT 59.222 47.619 0.00 0.00 0.00 3.67
270 271 2.224670 TGTGTGTATGAAGGGGTGGTTC 60.225 50.000 0.00 0.00 0.00 3.62
271 272 2.058705 TGTGTATGAAGGGGTGGTTCA 58.941 47.619 0.00 0.00 38.28 3.18
272 273 2.647299 TGTGTATGAAGGGGTGGTTCAT 59.353 45.455 3.95 3.95 44.86 2.57
273 274 3.075283 TGTGTATGAAGGGGTGGTTCATT 59.925 43.478 3.80 0.00 40.96 2.57
274 275 4.086457 GTGTATGAAGGGGTGGTTCATTT 58.914 43.478 3.80 0.00 40.96 2.32
275 276 4.526650 GTGTATGAAGGGGTGGTTCATTTT 59.473 41.667 3.80 0.00 40.96 1.82
276 277 4.526262 TGTATGAAGGGGTGGTTCATTTTG 59.474 41.667 3.80 0.00 40.96 2.44
277 278 1.691434 TGAAGGGGTGGTTCATTTTGC 59.309 47.619 0.00 0.00 0.00 3.68
278 279 1.001974 GAAGGGGTGGTTCATTTTGCC 59.998 52.381 0.00 0.00 0.00 4.52
279 280 0.835971 AGGGGTGGTTCATTTTGCCC 60.836 55.000 0.00 0.00 35.52 5.36
280 281 1.676968 GGGTGGTTCATTTTGCCCC 59.323 57.895 0.00 0.00 0.00 5.80
281 282 0.835971 GGGTGGTTCATTTTGCCCCT 60.836 55.000 0.00 0.00 0.00 4.79
282 283 0.608130 GGTGGTTCATTTTGCCCCTC 59.392 55.000 0.00 0.00 0.00 4.30
283 284 1.632589 GTGGTTCATTTTGCCCCTCT 58.367 50.000 0.00 0.00 0.00 3.69
284 285 2.556559 GGTGGTTCATTTTGCCCCTCTA 60.557 50.000 0.00 0.00 0.00 2.43
285 286 3.365472 GTGGTTCATTTTGCCCCTCTAT 58.635 45.455 0.00 0.00 0.00 1.98
286 287 3.131046 GTGGTTCATTTTGCCCCTCTATG 59.869 47.826 0.00 0.00 0.00 2.23
287 288 2.101415 GGTTCATTTTGCCCCTCTATGC 59.899 50.000 0.00 0.00 0.00 3.14
288 289 2.760092 GTTCATTTTGCCCCTCTATGCA 59.240 45.455 0.00 0.00 35.27 3.96
289 290 2.378038 TCATTTTGCCCCTCTATGCAC 58.622 47.619 0.00 0.00 37.18 4.57
290 291 1.066002 CATTTTGCCCCTCTATGCACG 59.934 52.381 0.00 0.00 37.18 5.34
291 292 0.679640 TTTTGCCCCTCTATGCACGG 60.680 55.000 0.00 0.00 37.18 4.94
292 293 1.847798 TTTGCCCCTCTATGCACGGT 61.848 55.000 0.00 0.00 37.18 4.83
293 294 2.109181 GCCCCTCTATGCACGGTC 59.891 66.667 0.00 0.00 0.00 4.79
294 295 2.731571 GCCCCTCTATGCACGGTCA 61.732 63.158 0.00 0.00 0.00 4.02
295 296 2.044806 GCCCCTCTATGCACGGTCAT 62.045 60.000 0.00 0.00 0.00 3.06
296 297 0.469917 CCCCTCTATGCACGGTCATT 59.530 55.000 0.00 0.00 0.00 2.57
297 298 1.586422 CCCTCTATGCACGGTCATTG 58.414 55.000 0.00 0.00 0.00 2.82
298 299 1.138859 CCCTCTATGCACGGTCATTGA 59.861 52.381 0.00 1.13 0.00 2.57
299 300 2.205074 CCTCTATGCACGGTCATTGAC 58.795 52.381 8.34 8.34 0.00 3.18
300 301 2.159043 CCTCTATGCACGGTCATTGACT 60.159 50.000 16.02 0.00 32.47 3.41
301 302 3.119291 CTCTATGCACGGTCATTGACTC 58.881 50.000 16.02 6.07 32.47 3.36
302 303 2.495669 TCTATGCACGGTCATTGACTCA 59.504 45.455 16.02 9.58 32.47 3.41
303 304 2.408271 ATGCACGGTCATTGACTCAT 57.592 45.000 16.02 11.15 32.47 2.90
304 305 1.441738 TGCACGGTCATTGACTCATG 58.558 50.000 16.02 12.32 32.47 3.07
305 306 0.729116 GCACGGTCATTGACTCATGG 59.271 55.000 16.02 4.02 32.47 3.66
306 307 1.675714 GCACGGTCATTGACTCATGGA 60.676 52.381 16.02 0.00 32.47 3.41
307 308 2.698803 CACGGTCATTGACTCATGGAA 58.301 47.619 16.02 0.00 32.47 3.53
308 309 2.416547 CACGGTCATTGACTCATGGAAC 59.583 50.000 16.02 0.00 32.47 3.62
309 310 2.009774 CGGTCATTGACTCATGGAACC 58.990 52.381 16.02 0.00 32.47 3.62
310 311 2.369394 GGTCATTGACTCATGGAACCC 58.631 52.381 16.02 0.00 32.47 4.11
311 312 2.290896 GGTCATTGACTCATGGAACCCA 60.291 50.000 16.02 0.00 33.32 4.51
312 313 2.749621 GTCATTGACTCATGGAACCCAC 59.250 50.000 9.59 0.00 35.80 4.61
313 314 2.644299 TCATTGACTCATGGAACCCACT 59.356 45.455 0.00 0.00 35.80 4.00
314 315 2.859165 TTGACTCATGGAACCCACTC 57.141 50.000 0.00 0.00 35.80 3.51
315 316 0.608130 TGACTCATGGAACCCACTCG 59.392 55.000 0.00 0.00 35.80 4.18
316 317 0.895530 GACTCATGGAACCCACTCGA 59.104 55.000 0.00 0.00 35.80 4.04
317 318 1.482593 GACTCATGGAACCCACTCGAT 59.517 52.381 0.00 0.00 35.80 3.59
318 319 2.693591 GACTCATGGAACCCACTCGATA 59.306 50.000 0.00 0.00 35.80 2.92
319 320 2.695666 ACTCATGGAACCCACTCGATAG 59.304 50.000 0.00 0.00 35.80 2.08
320 321 2.959030 CTCATGGAACCCACTCGATAGA 59.041 50.000 0.00 0.00 38.90 1.98
321 322 3.371034 TCATGGAACCCACTCGATAGAA 58.629 45.455 0.00 0.00 39.46 2.10
322 323 3.772572 TCATGGAACCCACTCGATAGAAA 59.227 43.478 0.00 0.00 39.46 2.52
323 324 3.871594 CATGGAACCCACTCGATAGAAAC 59.128 47.826 0.00 0.00 39.46 2.78
324 325 3.517901 ATGGAACCCACTCGATAGAAACA 59.482 43.478 0.00 0.00 39.46 2.83
325 326 4.623171 ATGGAACCCACTCGATAGAAACAC 60.623 45.833 0.00 0.00 39.46 3.32
326 327 7.032242 ATGGAACCCACTCGATAGAAACACA 62.032 44.000 0.00 0.00 39.46 3.72
327 328 8.957901 ATGGAACCCACTCGATAGAAACACAC 62.958 46.154 0.00 0.00 39.46 3.82
335 336 5.298197 TCGATAGAAACACACACTCTCTC 57.702 43.478 0.00 0.00 46.15 3.20
336 337 5.004448 TCGATAGAAACACACACTCTCTCT 58.996 41.667 0.00 0.00 46.15 3.10
337 338 5.122554 TCGATAGAAACACACACTCTCTCTC 59.877 44.000 0.00 0.00 46.15 3.20
338 339 5.123186 CGATAGAAACACACACTCTCTCTCT 59.877 44.000 0.00 0.00 39.76 3.10
339 340 4.846779 AGAAACACACACTCTCTCTCTC 57.153 45.455 0.00 0.00 0.00 3.20
340 341 4.469657 AGAAACACACACTCTCTCTCTCT 58.530 43.478 0.00 0.00 0.00 3.10
341 342 4.518970 AGAAACACACACTCTCTCTCTCTC 59.481 45.833 0.00 0.00 0.00 3.20
342 343 3.788227 ACACACACTCTCTCTCTCTCT 57.212 47.619 0.00 0.00 0.00 3.10
343 344 3.674997 ACACACACTCTCTCTCTCTCTC 58.325 50.000 0.00 0.00 0.00 3.20
344 345 3.327757 ACACACACTCTCTCTCTCTCTCT 59.672 47.826 0.00 0.00 0.00 3.10
345 346 4.202461 ACACACACTCTCTCTCTCTCTCTT 60.202 45.833 0.00 0.00 0.00 2.85
346 347 4.761739 CACACACTCTCTCTCTCTCTCTTT 59.238 45.833 0.00 0.00 0.00 2.52
347 348 5.241506 CACACACTCTCTCTCTCTCTCTTTT 59.758 44.000 0.00 0.00 0.00 2.27
348 349 6.429692 CACACACTCTCTCTCTCTCTCTTTTA 59.570 42.308 0.00 0.00 0.00 1.52
349 350 7.001674 ACACACTCTCTCTCTCTCTCTTTTAA 58.998 38.462 0.00 0.00 0.00 1.52
350 351 7.504238 ACACACTCTCTCTCTCTCTCTTTTAAA 59.496 37.037 0.00 0.00 0.00 1.52
351 352 8.522830 CACACTCTCTCTCTCTCTCTTTTAAAT 58.477 37.037 0.00 0.00 0.00 1.40
352 353 9.747898 ACACTCTCTCTCTCTCTCTTTTAAATA 57.252 33.333 0.00 0.00 0.00 1.40
357 358 9.683069 CTCTCTCTCTCTCTTTTAAATATCAGC 57.317 37.037 0.00 0.00 0.00 4.26
358 359 9.194972 TCTCTCTCTCTCTTTTAAATATCAGCA 57.805 33.333 0.00 0.00 0.00 4.41
359 360 9.814899 CTCTCTCTCTCTTTTAAATATCAGCAA 57.185 33.333 0.00 0.00 0.00 3.91
360 361 9.814899 TCTCTCTCTCTTTTAAATATCAGCAAG 57.185 33.333 0.00 0.00 0.00 4.01
361 362 9.814899 CTCTCTCTCTTTTAAATATCAGCAAGA 57.185 33.333 0.00 0.00 0.00 3.02
376 377 9.812347 ATATCAGCAAGAATAAATGATTACCCA 57.188 29.630 0.00 0.00 32.99 4.51
377 378 7.953005 TCAGCAAGAATAAATGATTACCCAA 57.047 32.000 0.00 0.00 0.00 4.12
378 379 8.359875 TCAGCAAGAATAAATGATTACCCAAA 57.640 30.769 0.00 0.00 0.00 3.28
379 380 8.980596 TCAGCAAGAATAAATGATTACCCAAAT 58.019 29.630 0.00 0.00 0.00 2.32
380 381 9.037737 CAGCAAGAATAAATGATTACCCAAATG 57.962 33.333 0.00 0.00 0.00 2.32
381 382 8.980596 AGCAAGAATAAATGATTACCCAAATGA 58.019 29.630 0.00 0.00 0.00 2.57
382 383 9.768662 GCAAGAATAAATGATTACCCAAATGAT 57.231 29.630 0.00 0.00 0.00 2.45
390 391 8.821686 AATGATTACCCAAATGATAAGTGTCA 57.178 30.769 0.00 0.00 0.00 3.58
391 392 7.624360 TGATTACCCAAATGATAAGTGTCAC 57.376 36.000 0.00 0.00 0.00 3.67
392 393 7.171653 TGATTACCCAAATGATAAGTGTCACA 58.828 34.615 5.62 0.00 0.00 3.58
393 394 6.811253 TTACCCAAATGATAAGTGTCACAC 57.189 37.500 0.00 0.00 34.10 3.82
394 395 3.751175 ACCCAAATGATAAGTGTCACACG 59.249 43.478 1.22 0.00 39.64 4.49
395 396 3.751175 CCCAAATGATAAGTGTCACACGT 59.249 43.478 1.22 1.06 39.64 4.49
396 397 4.378356 CCCAAATGATAAGTGTCACACGTG 60.378 45.833 15.48 15.48 39.64 4.49
397 398 4.213270 CCAAATGATAAGTGTCACACGTGT 59.787 41.667 17.22 17.22 39.64 4.49
398 399 4.990543 AATGATAAGTGTCACACGTGTG 57.009 40.909 37.04 37.04 46.91 3.82
399 400 2.749776 TGATAAGTGTCACACGTGTGG 58.250 47.619 39.88 25.18 45.65 4.17
400 401 2.101750 TGATAAGTGTCACACGTGTGGT 59.898 45.455 39.88 24.73 45.65 4.16
401 402 3.318557 TGATAAGTGTCACACGTGTGGTA 59.681 43.478 39.88 28.48 45.65 3.25
402 403 2.218953 AAGTGTCACACGTGTGGTAG 57.781 50.000 39.88 21.10 45.65 3.18
403 404 1.108776 AGTGTCACACGTGTGGTAGT 58.891 50.000 39.88 29.30 45.65 2.73
404 405 1.479323 AGTGTCACACGTGTGGTAGTT 59.521 47.619 39.88 23.00 45.65 2.24
405 406 2.689471 AGTGTCACACGTGTGGTAGTTA 59.311 45.455 39.88 22.46 45.65 2.24
406 407 3.047796 GTGTCACACGTGTGGTAGTTAG 58.952 50.000 39.88 18.65 45.65 2.34
407 408 2.689471 TGTCACACGTGTGGTAGTTAGT 59.311 45.455 39.88 5.48 45.65 2.24
408 409 3.882288 TGTCACACGTGTGGTAGTTAGTA 59.118 43.478 39.88 20.41 45.65 1.82
409 410 4.337836 TGTCACACGTGTGGTAGTTAGTAA 59.662 41.667 39.88 19.72 45.65 2.24
410 411 4.676924 GTCACACGTGTGGTAGTTAGTAAC 59.323 45.833 39.88 25.64 45.65 2.50
411 412 4.337836 TCACACGTGTGGTAGTTAGTAACA 59.662 41.667 39.88 19.05 45.65 2.41
417 418 3.593096 GTGGTAGTTAGTAACACTGCCC 58.407 50.000 15.28 7.45 44.88 5.36
418 419 3.260128 GTGGTAGTTAGTAACACTGCCCT 59.740 47.826 15.28 0.00 44.88 5.19
419 420 3.259876 TGGTAGTTAGTAACACTGCCCTG 59.740 47.826 15.28 0.00 44.27 4.45
420 421 3.512724 GGTAGTTAGTAACACTGCCCTGA 59.487 47.826 15.28 0.00 40.26 3.86
421 422 4.020839 GGTAGTTAGTAACACTGCCCTGAA 60.021 45.833 15.28 0.00 40.26 3.02
422 423 4.699925 AGTTAGTAACACTGCCCTGAAA 57.300 40.909 15.28 0.00 0.00 2.69
423 424 5.242795 AGTTAGTAACACTGCCCTGAAAT 57.757 39.130 15.28 0.00 0.00 2.17
424 425 5.631119 AGTTAGTAACACTGCCCTGAAATT 58.369 37.500 15.28 0.00 0.00 1.82
425 426 6.068670 AGTTAGTAACACTGCCCTGAAATTT 58.931 36.000 15.28 0.00 0.00 1.82
426 427 6.549736 AGTTAGTAACACTGCCCTGAAATTTT 59.450 34.615 15.28 0.00 0.00 1.82
427 428 5.869649 AGTAACACTGCCCTGAAATTTTT 57.130 34.783 0.00 0.00 0.00 1.94
428 429 6.969993 AGTAACACTGCCCTGAAATTTTTA 57.030 33.333 0.00 0.00 0.00 1.52
429 430 7.539034 AGTAACACTGCCCTGAAATTTTTAT 57.461 32.000 0.00 0.00 0.00 1.40
430 431 8.644374 AGTAACACTGCCCTGAAATTTTTATA 57.356 30.769 0.00 0.00 0.00 0.98
431 432 9.084533 AGTAACACTGCCCTGAAATTTTTATAA 57.915 29.630 0.00 0.00 0.00 0.98
432 433 9.135843 GTAACACTGCCCTGAAATTTTTATAAC 57.864 33.333 0.00 0.00 0.00 1.89
433 434 7.539034 ACACTGCCCTGAAATTTTTATAACT 57.461 32.000 0.00 0.00 0.00 2.24
434 435 8.644374 ACACTGCCCTGAAATTTTTATAACTA 57.356 30.769 0.00 0.00 0.00 2.24
435 436 9.084533 ACACTGCCCTGAAATTTTTATAACTAA 57.915 29.630 0.00 0.00 0.00 2.24
436 437 9.921637 CACTGCCCTGAAATTTTTATAACTAAA 57.078 29.630 0.00 0.00 0.00 1.85
473 474 7.686438 AAAAATGTCAAAAAGCCTGAAACTT 57.314 28.000 0.00 0.00 0.00 2.66
474 475 6.667007 AAATGTCAAAAAGCCTGAAACTTG 57.333 33.333 0.00 0.00 0.00 3.16
475 476 3.520569 TGTCAAAAAGCCTGAAACTTGC 58.479 40.909 0.00 0.00 0.00 4.01
476 477 2.866156 GTCAAAAAGCCTGAAACTTGCC 59.134 45.455 0.00 0.00 0.00 4.52
477 478 2.499289 TCAAAAAGCCTGAAACTTGCCA 59.501 40.909 0.00 0.00 0.00 4.92
478 479 3.134442 TCAAAAAGCCTGAAACTTGCCAT 59.866 39.130 0.00 0.00 0.00 4.40
479 480 3.391506 AAAAGCCTGAAACTTGCCATC 57.608 42.857 0.00 0.00 0.00 3.51
480 481 1.260544 AAGCCTGAAACTTGCCATCC 58.739 50.000 0.00 0.00 0.00 3.51
481 482 0.112995 AGCCTGAAACTTGCCATCCA 59.887 50.000 0.00 0.00 0.00 3.41
482 483 0.968405 GCCTGAAACTTGCCATCCAA 59.032 50.000 0.00 0.00 0.00 3.53
483 484 1.344114 GCCTGAAACTTGCCATCCAAA 59.656 47.619 0.00 0.00 31.94 3.28
484 485 2.027837 GCCTGAAACTTGCCATCCAAAT 60.028 45.455 0.00 0.00 31.94 2.32
485 486 3.195396 GCCTGAAACTTGCCATCCAAATA 59.805 43.478 0.00 0.00 31.94 1.40
486 487 4.322650 GCCTGAAACTTGCCATCCAAATAA 60.323 41.667 0.00 0.00 31.94 1.40
487 488 5.792741 CCTGAAACTTGCCATCCAAATAAA 58.207 37.500 0.00 0.00 31.94 1.40
488 489 6.229733 CCTGAAACTTGCCATCCAAATAAAA 58.770 36.000 0.00 0.00 31.94 1.52
489 490 6.709846 CCTGAAACTTGCCATCCAAATAAAAA 59.290 34.615 0.00 0.00 31.94 1.94
516 517 8.671384 TTAACATACTTCACAACTAAAGCTGT 57.329 30.769 0.00 0.00 0.00 4.40
517 518 6.787085 ACATACTTCACAACTAAAGCTGTC 57.213 37.500 0.00 0.00 0.00 3.51
518 519 6.288294 ACATACTTCACAACTAAAGCTGTCA 58.712 36.000 0.00 0.00 0.00 3.58
519 520 6.936900 ACATACTTCACAACTAAAGCTGTCAT 59.063 34.615 0.00 0.00 0.00 3.06
520 521 5.931441 ACTTCACAACTAAAGCTGTCATC 57.069 39.130 0.00 0.00 0.00 2.92
521 522 4.757149 ACTTCACAACTAAAGCTGTCATCC 59.243 41.667 0.00 0.00 0.00 3.51
522 523 4.623932 TCACAACTAAAGCTGTCATCCT 57.376 40.909 0.00 0.00 0.00 3.24
523 524 4.569943 TCACAACTAAAGCTGTCATCCTC 58.430 43.478 0.00 0.00 0.00 3.71
524 525 3.369147 CACAACTAAAGCTGTCATCCTCG 59.631 47.826 0.00 0.00 0.00 4.63
525 526 2.932614 CAACTAAAGCTGTCATCCTCGG 59.067 50.000 0.00 0.00 0.00 4.63
526 527 2.457598 ACTAAAGCTGTCATCCTCGGA 58.542 47.619 0.00 0.00 0.00 4.55
527 528 3.034635 ACTAAAGCTGTCATCCTCGGAT 58.965 45.455 0.00 0.00 34.81 4.18
528 529 4.215908 ACTAAAGCTGTCATCCTCGGATA 58.784 43.478 0.00 0.00 32.93 2.59
529 530 4.649674 ACTAAAGCTGTCATCCTCGGATAA 59.350 41.667 0.00 0.00 32.93 1.75
530 531 3.460857 AAGCTGTCATCCTCGGATAAC 57.539 47.619 0.00 0.00 32.93 1.89
531 532 2.672098 AGCTGTCATCCTCGGATAACT 58.328 47.619 0.00 0.00 32.93 2.24
532 533 3.833732 AGCTGTCATCCTCGGATAACTA 58.166 45.455 0.00 0.00 32.93 2.24
533 534 4.215908 AGCTGTCATCCTCGGATAACTAA 58.784 43.478 0.00 0.00 32.93 2.24
534 535 4.649674 AGCTGTCATCCTCGGATAACTAAA 59.350 41.667 0.00 0.00 32.93 1.85
535 536 5.305644 AGCTGTCATCCTCGGATAACTAAAT 59.694 40.000 0.00 0.00 32.93 1.40
536 537 5.992217 GCTGTCATCCTCGGATAACTAAATT 59.008 40.000 0.00 0.00 32.93 1.82
537 538 6.483640 GCTGTCATCCTCGGATAACTAAATTT 59.516 38.462 0.00 0.00 32.93 1.82
538 539 7.656137 GCTGTCATCCTCGGATAACTAAATTTA 59.344 37.037 0.00 0.00 32.93 1.40
539 540 8.882415 TGTCATCCTCGGATAACTAAATTTAC 57.118 34.615 0.00 0.00 32.93 2.01
540 541 7.929785 TGTCATCCTCGGATAACTAAATTTACC 59.070 37.037 0.00 0.00 32.93 2.85
541 542 7.929785 GTCATCCTCGGATAACTAAATTTACCA 59.070 37.037 0.00 0.00 32.93 3.25
542 543 8.656806 TCATCCTCGGATAACTAAATTTACCAT 58.343 33.333 0.00 0.00 32.93 3.55
543 544 8.936864 CATCCTCGGATAACTAAATTTACCATC 58.063 37.037 0.00 0.00 32.93 3.51
544 545 8.025270 TCCTCGGATAACTAAATTTACCATCA 57.975 34.615 0.00 0.00 0.00 3.07
545 546 8.487848 TCCTCGGATAACTAAATTTACCATCAA 58.512 33.333 0.00 0.00 0.00 2.57
546 547 9.116067 CCTCGGATAACTAAATTTACCATCAAA 57.884 33.333 0.00 0.00 0.00 2.69
565 566 3.935027 AAAAACGTTTGGGCGAAATTG 57.065 38.095 15.46 0.00 35.59 2.32
566 567 1.213491 AAACGTTTGGGCGAAATTGC 58.787 45.000 13.81 0.00 35.59 3.56
567 568 0.387565 AACGTTTGGGCGAAATTGCT 59.612 45.000 0.00 0.00 35.59 3.91
568 569 0.387565 ACGTTTGGGCGAAATTGCTT 59.612 45.000 0.00 0.00 35.59 3.91
569 570 1.059942 CGTTTGGGCGAAATTGCTTC 58.940 50.000 0.00 0.00 34.52 3.86
577 578 3.863681 GAAATTGCTTCGTGCCACA 57.136 47.368 0.00 0.00 42.00 4.17
578 579 1.408422 GAAATTGCTTCGTGCCACAC 58.592 50.000 0.00 0.00 42.00 3.82
592 593 3.218721 CACACGCGTGGCATTTATC 57.781 52.632 39.21 0.00 39.64 1.75
593 594 0.445829 CACACGCGTGGCATTTATCA 59.554 50.000 39.21 0.00 39.64 2.15
594 595 1.135831 CACACGCGTGGCATTTATCAA 60.136 47.619 39.21 0.00 39.64 2.57
595 596 1.130373 ACACGCGTGGCATTTATCAAG 59.870 47.619 39.21 13.24 34.19 3.02
596 597 0.732571 ACGCGTGGCATTTATCAAGG 59.267 50.000 12.93 0.00 0.00 3.61
597 598 0.732571 CGCGTGGCATTTATCAAGGT 59.267 50.000 0.00 0.00 0.00 3.50
598 599 1.268032 CGCGTGGCATTTATCAAGGTC 60.268 52.381 0.00 0.00 0.00 3.85
599 600 1.065551 GCGTGGCATTTATCAAGGTCC 59.934 52.381 0.00 0.00 0.00 4.46
600 601 2.364632 CGTGGCATTTATCAAGGTCCA 58.635 47.619 0.00 0.00 0.00 4.02
601 602 2.752354 CGTGGCATTTATCAAGGTCCAA 59.248 45.455 0.00 0.00 0.00 3.53
602 603 3.181497 CGTGGCATTTATCAAGGTCCAAG 60.181 47.826 0.00 0.00 0.00 3.61
603 604 4.016444 GTGGCATTTATCAAGGTCCAAGA 58.984 43.478 0.00 0.00 0.00 3.02
604 605 4.646492 GTGGCATTTATCAAGGTCCAAGAT 59.354 41.667 0.00 0.00 0.00 2.40
605 606 4.646040 TGGCATTTATCAAGGTCCAAGATG 59.354 41.667 6.38 0.00 0.00 2.90
606 607 4.038402 GGCATTTATCAAGGTCCAAGATGG 59.962 45.833 6.38 0.00 39.43 3.51
607 608 4.646492 GCATTTATCAAGGTCCAAGATGGT 59.354 41.667 6.38 0.00 39.03 3.55
608 609 5.127682 GCATTTATCAAGGTCCAAGATGGTT 59.872 40.000 6.38 0.00 39.03 3.67
609 610 6.351286 GCATTTATCAAGGTCCAAGATGGTTT 60.351 38.462 6.38 0.00 39.03 3.27
610 611 6.588719 TTTATCAAGGTCCAAGATGGTTTG 57.411 37.500 6.38 1.55 39.03 2.93
611 612 3.593442 TCAAGGTCCAAGATGGTTTGT 57.407 42.857 0.00 0.00 39.03 2.83
612 613 3.486383 TCAAGGTCCAAGATGGTTTGTC 58.514 45.455 0.00 0.00 39.03 3.18
613 614 2.558359 CAAGGTCCAAGATGGTTTGTCC 59.442 50.000 0.00 0.00 39.03 4.02
624 625 3.673543 TGGTTTGTCCACTTTAACCCT 57.326 42.857 0.00 0.00 41.93 4.34
625 626 3.983821 TGGTTTGTCCACTTTAACCCTT 58.016 40.909 0.00 0.00 41.93 3.95
626 627 4.354662 TGGTTTGTCCACTTTAACCCTTT 58.645 39.130 0.00 0.00 41.93 3.11
627 628 4.403113 TGGTTTGTCCACTTTAACCCTTTC 59.597 41.667 0.00 0.00 41.93 2.62
628 629 4.498513 GGTTTGTCCACTTTAACCCTTTCG 60.499 45.833 0.00 0.00 35.17 3.46
629 630 3.842007 TGTCCACTTTAACCCTTTCGA 57.158 42.857 0.00 0.00 0.00 3.71
630 631 4.360951 TGTCCACTTTAACCCTTTCGAT 57.639 40.909 0.00 0.00 0.00 3.59
631 632 4.721132 TGTCCACTTTAACCCTTTCGATT 58.279 39.130 0.00 0.00 0.00 3.34
632 633 5.134661 TGTCCACTTTAACCCTTTCGATTT 58.865 37.500 0.00 0.00 0.00 2.17
633 634 5.595133 TGTCCACTTTAACCCTTTCGATTTT 59.405 36.000 0.00 0.00 0.00 1.82
634 635 6.097129 TGTCCACTTTAACCCTTTCGATTTTT 59.903 34.615 0.00 0.00 0.00 1.94
635 636 6.639686 GTCCACTTTAACCCTTTCGATTTTTC 59.360 38.462 0.00 0.00 0.00 2.29
636 637 6.548251 TCCACTTTAACCCTTTCGATTTTTCT 59.452 34.615 0.00 0.00 0.00 2.52
637 638 7.720515 TCCACTTTAACCCTTTCGATTTTTCTA 59.279 33.333 0.00 0.00 0.00 2.10
638 639 8.520351 CCACTTTAACCCTTTCGATTTTTCTAT 58.480 33.333 0.00 0.00 0.00 1.98
639 640 9.908152 CACTTTAACCCTTTCGATTTTTCTATT 57.092 29.630 0.00 0.00 0.00 1.73
645 646 9.907229 AACCCTTTCGATTTTTCTATTAGATCT 57.093 29.630 0.00 0.00 0.00 2.75
646 647 9.549078 ACCCTTTCGATTTTTCTATTAGATCTC 57.451 33.333 0.00 0.00 0.00 2.75
647 648 9.547753 CCCTTTCGATTTTTCTATTAGATCTCA 57.452 33.333 0.00 0.00 0.00 3.27
664 665 7.854166 AGATCTCACCTAATGCTAAGAATCT 57.146 36.000 0.00 0.00 0.00 2.40
665 666 8.261349 AGATCTCACCTAATGCTAAGAATCTT 57.739 34.615 0.00 0.00 0.00 2.40
666 667 9.373450 AGATCTCACCTAATGCTAAGAATCTTA 57.627 33.333 2.44 2.44 0.00 2.10
667 668 9.988815 GATCTCACCTAATGCTAAGAATCTTAA 57.011 33.333 4.13 0.00 0.00 1.85
715 716 9.986157 TCTAGAAAATCTAGTACCTTAACTCCA 57.014 33.333 12.73 0.00 45.11 3.86
725 727 9.280174 CTAGTACCTTAACTCCAATGAACAAAA 57.720 33.333 0.00 0.00 0.00 2.44
871 889 0.739813 AAGATCACGCCGCACCTAAC 60.740 55.000 0.00 0.00 0.00 2.34
888 907 0.706433 AACCCACTACCGACCCTCTA 59.294 55.000 0.00 0.00 0.00 2.43
889 908 0.706433 ACCCACTACCGACCCTCTAA 59.294 55.000 0.00 0.00 0.00 2.10
891 910 1.109609 CCACTACCGACCCTCTAACC 58.890 60.000 0.00 0.00 0.00 2.85
892 911 1.109609 CACTACCGACCCTCTAACCC 58.890 60.000 0.00 0.00 0.00 4.11
925 1360 2.757077 GACCCCACCTGAACCCAG 59.243 66.667 0.00 0.00 40.09 4.45
1242 1684 3.647771 GGGAAGAAGCCCCACCGT 61.648 66.667 0.00 0.00 42.62 4.83
1341 1783 2.828549 GCGATTCACCGGGCCATT 60.829 61.111 6.32 0.00 0.00 3.16
1464 1906 4.021925 GTTGACCCTCCGCTGCCT 62.022 66.667 0.00 0.00 0.00 4.75
1518 1960 2.046892 CTGGCGGAGGTGGTTGAG 60.047 66.667 0.00 0.00 0.00 3.02
1522 1964 3.636231 CGGAGGTGGTTGAGGGCA 61.636 66.667 0.00 0.00 0.00 5.36
1551 1993 2.224209 GGAAGTGAAGAAGACGGTGGAA 60.224 50.000 0.00 0.00 0.00 3.53
1704 2146 1.862806 GCAAGCCGATATTCCTCGC 59.137 57.895 0.00 0.00 37.33 5.03
1792 2236 9.878667 TTTGATTAGTCAGTCAAATCGGTATTA 57.121 29.630 0.00 0.00 38.88 0.98
1879 2328 2.491693 GGTGTGGTGGTCATGTATTTGG 59.508 50.000 0.00 0.00 0.00 3.28
1880 2329 3.153919 GTGTGGTGGTCATGTATTTGGT 58.846 45.455 0.00 0.00 0.00 3.67
1901 2350 6.998802 TGGTTCCTTGGTGTAAATATTTTGG 58.001 36.000 5.91 0.00 0.00 3.28
1906 2355 8.251383 TCCTTGGTGTAAATATTTTGGTTTGA 57.749 30.769 5.91 0.00 0.00 2.69
1907 2356 8.875168 TCCTTGGTGTAAATATTTTGGTTTGAT 58.125 29.630 5.91 0.00 0.00 2.57
1911 2360 7.880195 TGGTGTAAATATTTTGGTTTGATTGGG 59.120 33.333 5.91 0.00 0.00 4.12
1936 2387 4.285775 TCTTCATGGTTGGTGTCATGAGTA 59.714 41.667 0.00 0.00 46.76 2.59
1942 2393 3.436704 GGTTGGTGTCATGAGTATGTGTG 59.563 47.826 0.00 0.00 35.73 3.82
1946 2397 3.857665 GGTGTCATGAGTATGTGTGTACG 59.142 47.826 0.00 0.00 35.73 3.67
2000 2460 4.962362 AGTGGTGAAGGGTTCAAGAATTTT 59.038 37.500 0.00 0.00 42.15 1.82
2001 2461 5.049828 GTGGTGAAGGGTTCAAGAATTTTG 58.950 41.667 0.00 0.00 42.15 2.44
2016 2476 8.977505 TCAAGAATTTTGCAGTATTTTTGTAGC 58.022 29.630 17.73 0.00 31.47 3.58
2068 2683 3.857052 TGACTAGAAGCCGTATGGTTTG 58.143 45.455 7.93 0.00 39.01 2.93
2082 2698 2.404559 TGGTTTGTGTCTGGTCCTACT 58.595 47.619 0.00 0.00 0.00 2.57
2186 2802 1.113788 CAATAGTTGTGCCATGGGGG 58.886 55.000 15.13 0.00 40.85 5.40
2225 2842 6.611613 TTAGAGGAATAGGTCTATGCCATG 57.388 41.667 15.46 0.00 42.66 3.66
2242 2859 7.671495 ATGCCATGGTTTTTATTGAAAGAAC 57.329 32.000 14.67 0.00 0.00 3.01
2244 2861 7.050377 TGCCATGGTTTTTATTGAAAGAACAA 58.950 30.769 14.67 0.00 30.79 2.83
2268 2888 7.775397 AAAATTTTCATGTGGTTGAACTCAG 57.225 32.000 0.00 0.00 35.42 3.35
2303 2923 7.233632 TCTATAGGATTGCATGCAAAATAGGT 58.766 34.615 34.84 18.87 39.55 3.08
2318 2938 7.015098 TGCAAAATAGGTCAGAGGAAAAATTCA 59.985 33.333 0.00 0.00 0.00 2.57
2352 2972 3.202818 TCCATAGAGACCAAACATGCCAT 59.797 43.478 0.00 0.00 0.00 4.40
2385 3005 6.808321 AATGAGCCTTGTATACCTAGACAA 57.192 37.500 0.00 0.00 35.31 3.18
2400 3020 7.886629 ACCTAGACAAAAGGTATACGTATGA 57.113 36.000 18.37 0.00 45.69 2.15
2471 3091 9.920946 AGAAGCCCTAAGTAATTTATGATTCAA 57.079 29.630 0.00 0.00 0.00 2.69
2509 3129 6.796705 ACATAGGGTATTGCGCTTATAAAC 57.203 37.500 9.73 3.64 40.99 2.01
2510 3130 6.292923 ACATAGGGTATTGCGCTTATAAACA 58.707 36.000 9.73 0.00 40.99 2.83
2535 3155 1.185618 TGGTGCTAGCGAGTCCAAGT 61.186 55.000 10.77 0.00 0.00 3.16
2548 3168 4.982916 CGAGTCCAAGTATAGTTGTATGCC 59.017 45.833 17.14 4.07 0.00 4.40
2577 3197 5.016051 TGCATAAGACTTGAGCCTTCTAG 57.984 43.478 10.12 0.00 33.19 2.43
2578 3198 4.141846 TGCATAAGACTTGAGCCTTCTAGG 60.142 45.833 10.12 0.00 38.80 3.02
2590 3210 3.922171 CCTTCTAGGCTGACCTCAAAT 57.078 47.619 0.00 0.00 46.34 2.32
2591 3211 3.802866 CCTTCTAGGCTGACCTCAAATC 58.197 50.000 0.00 0.00 46.34 2.17
2592 3212 3.198635 CCTTCTAGGCTGACCTCAAATCA 59.801 47.826 0.00 0.00 46.34 2.57
2593 3213 4.141528 CCTTCTAGGCTGACCTCAAATCAT 60.142 45.833 0.00 0.00 46.34 2.45
2594 3214 5.435291 CTTCTAGGCTGACCTCAAATCATT 58.565 41.667 0.00 0.00 46.34 2.57
2595 3215 5.441718 TCTAGGCTGACCTCAAATCATTT 57.558 39.130 0.00 0.00 46.34 2.32
2596 3216 5.819991 TCTAGGCTGACCTCAAATCATTTT 58.180 37.500 0.00 0.00 46.34 1.82
2597 3217 6.957631 TCTAGGCTGACCTCAAATCATTTTA 58.042 36.000 0.00 0.00 46.34 1.52
2628 3269 2.669924 CTGACCATGACATGTCAACGAG 59.330 50.000 31.00 20.74 43.58 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.112412 TTGAAGTCTTTGGGGAGCCC 59.888 55.000 0.00 0.00 45.71 5.19
11 12 2.222227 ATTGAAGTCTTTGGGGAGCC 57.778 50.000 0.00 0.00 0.00 4.70
12 13 5.654209 AGAAATATTGAAGTCTTTGGGGAGC 59.346 40.000 0.00 0.00 0.00 4.70
13 14 7.709149 AAGAAATATTGAAGTCTTTGGGGAG 57.291 36.000 0.00 0.00 0.00 4.30
14 15 8.491045 AAAAGAAATATTGAAGTCTTTGGGGA 57.509 30.769 11.71 0.00 39.60 4.81
15 16 7.819415 GGAAAAGAAATATTGAAGTCTTTGGGG 59.181 37.037 11.71 0.00 39.60 4.96
16 17 8.588472 AGGAAAAGAAATATTGAAGTCTTTGGG 58.412 33.333 11.71 0.00 39.60 4.12
17 18 9.987272 AAGGAAAAGAAATATTGAAGTCTTTGG 57.013 29.630 11.71 0.00 39.60 3.28
23 24 9.899226 CGAAAGAAGGAAAAGAAATATTGAAGT 57.101 29.630 0.00 0.00 0.00 3.01
24 25 9.346725 CCGAAAGAAGGAAAAGAAATATTGAAG 57.653 33.333 0.00 0.00 0.00 3.02
25 26 9.073475 TCCGAAAGAAGGAAAAGAAATATTGAA 57.927 29.630 0.00 0.00 34.33 2.69
26 27 8.630054 TCCGAAAGAAGGAAAAGAAATATTGA 57.370 30.769 0.00 0.00 34.33 2.57
27 28 9.860898 AATCCGAAAGAAGGAAAAGAAATATTG 57.139 29.630 0.00 0.00 41.69 1.90
73 74 8.793592 GGAAAAGGCAGAAAACTCTAAATTAGA 58.206 33.333 2.44 2.44 0.00 2.10
74 75 8.576442 TGGAAAAGGCAGAAAACTCTAAATTAG 58.424 33.333 0.00 0.00 0.00 1.73
75 76 8.357402 GTGGAAAAGGCAGAAAACTCTAAATTA 58.643 33.333 0.00 0.00 0.00 1.40
76 77 7.147742 TGTGGAAAAGGCAGAAAACTCTAAATT 60.148 33.333 0.00 0.00 0.00 1.82
77 78 6.323739 TGTGGAAAAGGCAGAAAACTCTAAAT 59.676 34.615 0.00 0.00 0.00 1.40
78 79 5.654650 TGTGGAAAAGGCAGAAAACTCTAAA 59.345 36.000 0.00 0.00 0.00 1.85
79 80 5.067283 GTGTGGAAAAGGCAGAAAACTCTAA 59.933 40.000 0.00 0.00 0.00 2.10
80 81 4.578928 GTGTGGAAAAGGCAGAAAACTCTA 59.421 41.667 0.00 0.00 0.00 2.43
81 82 3.381590 GTGTGGAAAAGGCAGAAAACTCT 59.618 43.478 0.00 0.00 0.00 3.24
82 83 3.130340 TGTGTGGAAAAGGCAGAAAACTC 59.870 43.478 0.00 0.00 0.00 3.01
83 84 3.096092 TGTGTGGAAAAGGCAGAAAACT 58.904 40.909 0.00 0.00 0.00 2.66
84 85 3.518634 TGTGTGGAAAAGGCAGAAAAC 57.481 42.857 0.00 0.00 0.00 2.43
85 86 4.543590 TTTGTGTGGAAAAGGCAGAAAA 57.456 36.364 0.00 0.00 0.00 2.29
86 87 4.543590 TTTTGTGTGGAAAAGGCAGAAA 57.456 36.364 0.00 0.00 0.00 2.52
87 88 4.543590 TTTTTGTGTGGAAAAGGCAGAA 57.456 36.364 0.00 0.00 0.00 3.02
88 89 4.751767 ATTTTTGTGTGGAAAAGGCAGA 57.248 36.364 0.00 0.00 30.36 4.26
89 90 5.990996 ACATATTTTTGTGTGGAAAAGGCAG 59.009 36.000 0.00 0.00 30.36 4.85
90 91 5.923204 ACATATTTTTGTGTGGAAAAGGCA 58.077 33.333 0.00 0.00 30.36 4.75
91 92 5.988561 TGACATATTTTTGTGTGGAAAAGGC 59.011 36.000 0.00 0.00 30.36 4.35
92 93 7.118101 CCATGACATATTTTTGTGTGGAAAAGG 59.882 37.037 0.00 0.00 35.50 3.11
93 94 7.871973 TCCATGACATATTTTTGTGTGGAAAAG 59.128 33.333 0.00 0.00 37.73 2.27
94 95 7.730084 TCCATGACATATTTTTGTGTGGAAAA 58.270 30.769 0.00 0.00 37.73 2.29
95 96 7.295322 TCCATGACATATTTTTGTGTGGAAA 57.705 32.000 0.00 0.00 37.73 3.13
96 97 6.907853 TCCATGACATATTTTTGTGTGGAA 57.092 33.333 0.00 0.00 37.73 3.53
97 98 8.586879 TTATCCATGACATATTTTTGTGTGGA 57.413 30.769 0.00 9.42 41.47 4.02
98 99 9.251792 CATTATCCATGACATATTTTTGTGTGG 57.748 33.333 0.00 0.00 34.31 4.17
99 100 9.806203 ACATTATCCATGACATATTTTTGTGTG 57.194 29.630 0.00 0.00 36.24 3.82
113 114 9.729023 CGTTTATGCTAAAAACATTATCCATGA 57.271 29.630 0.00 0.00 36.78 3.07
114 115 8.967218 CCGTTTATGCTAAAAACATTATCCATG 58.033 33.333 8.94 0.00 36.78 3.66
115 116 8.691797 ACCGTTTATGCTAAAAACATTATCCAT 58.308 29.630 8.94 0.00 36.78 3.41
116 117 8.057536 ACCGTTTATGCTAAAAACATTATCCA 57.942 30.769 8.94 0.00 36.78 3.41
117 118 8.920509 AACCGTTTATGCTAAAAACATTATCC 57.079 30.769 8.94 0.00 36.78 2.59
120 121 9.530633 ACAAAACCGTTTATGCTAAAAACATTA 57.469 25.926 0.00 0.00 36.78 1.90
121 122 8.426881 ACAAAACCGTTTATGCTAAAAACATT 57.573 26.923 0.00 2.01 36.78 2.71
122 123 9.530633 TTACAAAACCGTTTATGCTAAAAACAT 57.469 25.926 0.00 0.00 36.78 2.71
123 124 8.922058 TTACAAAACCGTTTATGCTAAAAACA 57.078 26.923 0.00 0.00 36.78 2.83
127 128 9.968870 AGATTTTACAAAACCGTTTATGCTAAA 57.031 25.926 0.00 3.90 0.00 1.85
128 129 9.615295 GAGATTTTACAAAACCGTTTATGCTAA 57.385 29.630 0.00 0.00 0.00 3.09
129 130 8.784994 TGAGATTTTACAAAACCGTTTATGCTA 58.215 29.630 0.00 0.00 0.00 3.49
130 131 7.653647 TGAGATTTTACAAAACCGTTTATGCT 58.346 30.769 0.00 0.00 0.00 3.79
131 132 7.861176 TGAGATTTTACAAAACCGTTTATGC 57.139 32.000 0.00 0.00 0.00 3.14
135 136 9.804758 TGTAAATGAGATTTTACAAAACCGTTT 57.195 25.926 7.18 0.00 44.74 3.60
146 147 9.638239 GCCAGAAAACATGTAAATGAGATTTTA 57.362 29.630 0.00 0.00 33.82 1.52
147 148 8.149647 TGCCAGAAAACATGTAAATGAGATTTT 58.850 29.630 0.00 0.00 33.82 1.82
148 149 7.599998 GTGCCAGAAAACATGTAAATGAGATTT 59.400 33.333 0.00 0.00 36.29 2.17
149 150 7.039504 AGTGCCAGAAAACATGTAAATGAGATT 60.040 33.333 0.00 0.00 0.00 2.40
150 151 6.435277 AGTGCCAGAAAACATGTAAATGAGAT 59.565 34.615 0.00 0.00 0.00 2.75
151 152 5.769662 AGTGCCAGAAAACATGTAAATGAGA 59.230 36.000 0.00 0.00 0.00 3.27
152 153 6.017400 AGTGCCAGAAAACATGTAAATGAG 57.983 37.500 0.00 0.00 0.00 2.90
153 154 5.334802 CGAGTGCCAGAAAACATGTAAATGA 60.335 40.000 0.00 0.00 0.00 2.57
154 155 4.853196 CGAGTGCCAGAAAACATGTAAATG 59.147 41.667 0.00 0.00 0.00 2.32
155 156 4.518970 ACGAGTGCCAGAAAACATGTAAAT 59.481 37.500 0.00 0.00 0.00 1.40
156 157 3.880490 ACGAGTGCCAGAAAACATGTAAA 59.120 39.130 0.00 0.00 0.00 2.01
157 158 3.249799 CACGAGTGCCAGAAAACATGTAA 59.750 43.478 0.00 0.00 0.00 2.41
158 159 2.805671 CACGAGTGCCAGAAAACATGTA 59.194 45.455 0.00 0.00 0.00 2.29
159 160 1.603802 CACGAGTGCCAGAAAACATGT 59.396 47.619 0.00 0.00 0.00 3.21
160 161 1.603802 ACACGAGTGCCAGAAAACATG 59.396 47.619 2.76 0.00 0.00 3.21
161 162 1.873591 GACACGAGTGCCAGAAAACAT 59.126 47.619 2.76 0.00 0.00 2.71
162 163 1.295792 GACACGAGTGCCAGAAAACA 58.704 50.000 2.76 0.00 0.00 2.83
163 164 0.586802 GGACACGAGTGCCAGAAAAC 59.413 55.000 2.76 0.00 0.00 2.43
164 165 0.468226 AGGACACGAGTGCCAGAAAA 59.532 50.000 15.33 0.00 36.65 2.29
165 166 0.468226 AAGGACACGAGTGCCAGAAA 59.532 50.000 15.33 0.00 36.65 2.52
166 167 0.468226 AAAGGACACGAGTGCCAGAA 59.532 50.000 15.33 0.00 36.65 3.02
167 168 0.468226 AAAAGGACACGAGTGCCAGA 59.532 50.000 15.33 0.00 36.65 3.86
168 169 1.308998 AAAAAGGACACGAGTGCCAG 58.691 50.000 15.33 0.00 36.65 4.85
169 170 3.487576 AAAAAGGACACGAGTGCCA 57.512 47.368 15.33 0.00 36.65 4.92
189 190 7.562454 AAAGGACACGAGACTAATTCAAAAA 57.438 32.000 0.00 0.00 0.00 1.94
190 191 7.066525 ACAAAAGGACACGAGACTAATTCAAAA 59.933 33.333 0.00 0.00 0.00 2.44
191 192 6.540914 ACAAAAGGACACGAGACTAATTCAAA 59.459 34.615 0.00 0.00 0.00 2.69
192 193 6.053005 ACAAAAGGACACGAGACTAATTCAA 58.947 36.000 0.00 0.00 0.00 2.69
193 194 5.607477 ACAAAAGGACACGAGACTAATTCA 58.393 37.500 0.00 0.00 0.00 2.57
194 195 6.202188 TCAACAAAAGGACACGAGACTAATTC 59.798 38.462 0.00 0.00 0.00 2.17
195 196 6.053005 TCAACAAAAGGACACGAGACTAATT 58.947 36.000 0.00 0.00 0.00 1.40
196 197 5.607477 TCAACAAAAGGACACGAGACTAAT 58.393 37.500 0.00 0.00 0.00 1.73
197 198 5.013568 TCAACAAAAGGACACGAGACTAA 57.986 39.130 0.00 0.00 0.00 2.24
198 199 4.659111 TCAACAAAAGGACACGAGACTA 57.341 40.909 0.00 0.00 0.00 2.59
199 200 3.536956 TCAACAAAAGGACACGAGACT 57.463 42.857 0.00 0.00 0.00 3.24
200 201 3.560068 ACATCAACAAAAGGACACGAGAC 59.440 43.478 0.00 0.00 0.00 3.36
201 202 3.559655 CACATCAACAAAAGGACACGAGA 59.440 43.478 0.00 0.00 0.00 4.04
202 203 3.312421 ACACATCAACAAAAGGACACGAG 59.688 43.478 0.00 0.00 0.00 4.18
203 204 3.275143 ACACATCAACAAAAGGACACGA 58.725 40.909 0.00 0.00 0.00 4.35
204 205 3.691049 ACACATCAACAAAAGGACACG 57.309 42.857 0.00 0.00 0.00 4.49
205 206 5.616866 CGGATACACATCAACAAAAGGACAC 60.617 44.000 0.00 0.00 32.32 3.67
206 207 4.454161 CGGATACACATCAACAAAAGGACA 59.546 41.667 0.00 0.00 32.32 4.02
207 208 4.142687 CCGGATACACATCAACAAAAGGAC 60.143 45.833 0.00 0.00 32.32 3.85
208 209 4.006989 CCGGATACACATCAACAAAAGGA 58.993 43.478 0.00 0.00 32.32 3.36
209 210 3.756434 ACCGGATACACATCAACAAAAGG 59.244 43.478 9.46 0.00 32.32 3.11
210 211 4.215399 ACACCGGATACACATCAACAAAAG 59.785 41.667 9.46 0.00 32.32 2.27
211 212 4.138290 ACACCGGATACACATCAACAAAA 58.862 39.130 9.46 0.00 32.32 2.44
212 213 3.745799 ACACCGGATACACATCAACAAA 58.254 40.909 9.46 0.00 32.32 2.83
213 214 3.410631 ACACCGGATACACATCAACAA 57.589 42.857 9.46 0.00 32.32 2.83
214 215 3.410631 AACACCGGATACACATCAACA 57.589 42.857 9.46 0.00 32.32 3.33
215 216 4.472286 CAAAACACCGGATACACATCAAC 58.528 43.478 9.46 0.00 32.32 3.18
216 217 3.057876 GCAAAACACCGGATACACATCAA 60.058 43.478 9.46 0.00 32.32 2.57
217 218 2.486203 GCAAAACACCGGATACACATCA 59.514 45.455 9.46 0.00 32.32 3.07
218 219 2.159435 GGCAAAACACCGGATACACATC 60.159 50.000 9.46 0.00 0.00 3.06
219 220 1.816224 GGCAAAACACCGGATACACAT 59.184 47.619 9.46 0.00 0.00 3.21
220 221 1.240256 GGCAAAACACCGGATACACA 58.760 50.000 9.46 0.00 0.00 3.72
221 222 0.524414 GGGCAAAACACCGGATACAC 59.476 55.000 9.46 0.00 0.00 2.90
222 223 0.402504 AGGGCAAAACACCGGATACA 59.597 50.000 9.46 0.00 0.00 2.29
223 224 1.541379 AAGGGCAAAACACCGGATAC 58.459 50.000 9.46 0.00 0.00 2.24
224 225 1.889829 CAAAGGGCAAAACACCGGATA 59.110 47.619 9.46 0.00 0.00 2.59
225 226 0.678950 CAAAGGGCAAAACACCGGAT 59.321 50.000 9.46 0.00 0.00 4.18
226 227 0.395862 TCAAAGGGCAAAACACCGGA 60.396 50.000 9.46 0.00 0.00 5.14
227 228 0.249280 GTCAAAGGGCAAAACACCGG 60.249 55.000 0.00 0.00 0.00 5.28
228 229 0.249280 GGTCAAAGGGCAAAACACCG 60.249 55.000 0.00 0.00 0.00 4.94
229 230 0.827368 TGGTCAAAGGGCAAAACACC 59.173 50.000 0.00 0.00 0.00 4.16
230 231 2.158971 ACATGGTCAAAGGGCAAAACAC 60.159 45.455 0.00 0.00 0.00 3.32
231 232 2.114616 ACATGGTCAAAGGGCAAAACA 58.885 42.857 0.00 0.00 0.00 2.83
232 233 2.158971 ACACATGGTCAAAGGGCAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
233 234 2.114616 ACACATGGTCAAAGGGCAAAA 58.885 42.857 0.00 0.00 0.00 2.44
234 235 1.411977 CACACATGGTCAAAGGGCAAA 59.588 47.619 0.00 0.00 0.00 3.68
235 236 1.039068 CACACATGGTCAAAGGGCAA 58.961 50.000 0.00 0.00 0.00 4.52
236 237 0.106268 ACACACATGGTCAAAGGGCA 60.106 50.000 0.00 0.00 0.00 5.36
237 238 1.904287 TACACACATGGTCAAAGGGC 58.096 50.000 0.00 0.00 0.00 5.19
238 239 3.684908 TCATACACACATGGTCAAAGGG 58.315 45.455 0.00 0.00 0.00 3.95
239 240 4.156556 CCTTCATACACACATGGTCAAAGG 59.843 45.833 0.00 0.00 0.00 3.11
240 241 4.156556 CCCTTCATACACACATGGTCAAAG 59.843 45.833 0.00 0.00 0.00 2.77
241 242 4.078537 CCCTTCATACACACATGGTCAAA 58.921 43.478 0.00 0.00 0.00 2.69
242 243 3.561097 CCCCTTCATACACACATGGTCAA 60.561 47.826 0.00 0.00 0.00 3.18
243 244 2.026356 CCCCTTCATACACACATGGTCA 60.026 50.000 0.00 0.00 0.00 4.02
244 245 2.026262 ACCCCTTCATACACACATGGTC 60.026 50.000 0.00 0.00 0.00 4.02
245 246 1.992557 ACCCCTTCATACACACATGGT 59.007 47.619 0.00 0.00 0.00 3.55
246 247 2.368439 CACCCCTTCATACACACATGG 58.632 52.381 0.00 0.00 0.00 3.66
247 248 2.290896 ACCACCCCTTCATACACACATG 60.291 50.000 0.00 0.00 0.00 3.21
248 249 1.992557 ACCACCCCTTCATACACACAT 59.007 47.619 0.00 0.00 0.00 3.21
249 250 1.440618 ACCACCCCTTCATACACACA 58.559 50.000 0.00 0.00 0.00 3.72
250 251 2.224670 TGAACCACCCCTTCATACACAC 60.225 50.000 0.00 0.00 0.00 3.82
251 252 2.058705 TGAACCACCCCTTCATACACA 58.941 47.619 0.00 0.00 0.00 3.72
252 253 2.871096 TGAACCACCCCTTCATACAC 57.129 50.000 0.00 0.00 0.00 2.90
253 254 4.396357 AAATGAACCACCCCTTCATACA 57.604 40.909 0.00 0.00 37.37 2.29
254 255 4.620567 GCAAAATGAACCACCCCTTCATAC 60.621 45.833 0.00 0.00 37.37 2.39
255 256 3.513515 GCAAAATGAACCACCCCTTCATA 59.486 43.478 0.00 0.00 37.37 2.15
256 257 2.302733 GCAAAATGAACCACCCCTTCAT 59.697 45.455 0.00 0.00 39.56 2.57
257 258 1.691434 GCAAAATGAACCACCCCTTCA 59.309 47.619 0.00 0.00 32.24 3.02
258 259 1.001974 GGCAAAATGAACCACCCCTTC 59.998 52.381 0.00 0.00 0.00 3.46
259 260 1.055849 GGCAAAATGAACCACCCCTT 58.944 50.000 0.00 0.00 0.00 3.95
260 261 0.835971 GGGCAAAATGAACCACCCCT 60.836 55.000 0.00 0.00 0.00 4.79
261 262 1.676968 GGGCAAAATGAACCACCCC 59.323 57.895 0.00 0.00 0.00 4.95
262 263 0.835971 AGGGGCAAAATGAACCACCC 60.836 55.000 0.00 0.00 36.93 4.61
263 264 0.608130 GAGGGGCAAAATGAACCACC 59.392 55.000 0.00 0.00 0.00 4.61
264 265 1.632589 AGAGGGGCAAAATGAACCAC 58.367 50.000 0.00 0.00 0.00 4.16
265 266 3.364549 CATAGAGGGGCAAAATGAACCA 58.635 45.455 0.00 0.00 0.00 3.67
266 267 2.101415 GCATAGAGGGGCAAAATGAACC 59.899 50.000 0.00 0.00 0.00 3.62
267 268 2.760092 TGCATAGAGGGGCAAAATGAAC 59.240 45.455 0.00 0.00 37.03 3.18
268 269 2.760092 GTGCATAGAGGGGCAAAATGAA 59.240 45.455 0.00 0.00 42.45 2.57
269 270 2.378038 GTGCATAGAGGGGCAAAATGA 58.622 47.619 0.00 0.00 42.45 2.57
270 271 1.066002 CGTGCATAGAGGGGCAAAATG 59.934 52.381 0.00 0.00 42.45 2.32
271 272 1.392589 CGTGCATAGAGGGGCAAAAT 58.607 50.000 0.00 0.00 42.45 1.82
272 273 0.679640 CCGTGCATAGAGGGGCAAAA 60.680 55.000 0.00 0.00 42.45 2.44
273 274 1.077787 CCGTGCATAGAGGGGCAAA 60.078 57.895 0.00 0.00 42.45 3.68
274 275 2.252072 GACCGTGCATAGAGGGGCAA 62.252 60.000 0.00 0.00 42.45 4.52
275 276 2.687200 ACCGTGCATAGAGGGGCA 60.687 61.111 0.00 0.00 37.77 5.36
276 277 2.044806 ATGACCGTGCATAGAGGGGC 62.045 60.000 0.00 0.00 0.00 5.80
277 278 0.469917 AATGACCGTGCATAGAGGGG 59.530 55.000 0.00 0.00 0.00 4.79
278 279 1.138859 TCAATGACCGTGCATAGAGGG 59.861 52.381 0.00 0.00 0.00 4.30
279 280 2.159043 AGTCAATGACCGTGCATAGAGG 60.159 50.000 10.12 0.00 32.18 3.69
280 281 3.119291 GAGTCAATGACCGTGCATAGAG 58.881 50.000 10.12 0.00 32.18 2.43
281 282 2.495669 TGAGTCAATGACCGTGCATAGA 59.504 45.455 10.12 0.00 32.18 1.98
282 283 2.892374 TGAGTCAATGACCGTGCATAG 58.108 47.619 10.12 0.00 32.18 2.23
283 284 3.197265 CATGAGTCAATGACCGTGCATA 58.803 45.455 10.12 0.00 32.18 3.14
284 285 2.011947 CATGAGTCAATGACCGTGCAT 58.988 47.619 10.12 6.33 32.18 3.96
285 286 1.441738 CATGAGTCAATGACCGTGCA 58.558 50.000 10.12 4.20 32.18 4.57
286 287 0.729116 CCATGAGTCAATGACCGTGC 59.271 55.000 10.12 0.00 32.18 5.34
287 288 2.385013 TCCATGAGTCAATGACCGTG 57.615 50.000 10.12 12.26 32.18 4.94
288 289 2.615493 GGTTCCATGAGTCAATGACCGT 60.615 50.000 10.12 0.43 32.18 4.83
289 290 2.009774 GGTTCCATGAGTCAATGACCG 58.990 52.381 10.12 0.00 32.18 4.79
290 291 2.290896 TGGGTTCCATGAGTCAATGACC 60.291 50.000 10.12 3.46 32.18 4.02
291 292 2.749621 GTGGGTTCCATGAGTCAATGAC 59.250 50.000 5.02 5.02 35.28 3.06
292 293 2.644299 AGTGGGTTCCATGAGTCAATGA 59.356 45.455 0.00 0.00 35.28 2.57
293 294 3.012518 GAGTGGGTTCCATGAGTCAATG 58.987 50.000 0.00 0.00 35.28 2.82
294 295 2.355108 CGAGTGGGTTCCATGAGTCAAT 60.355 50.000 0.00 0.00 35.28 2.57
295 296 1.001974 CGAGTGGGTTCCATGAGTCAA 59.998 52.381 0.00 0.00 35.28 3.18
296 297 0.608130 CGAGTGGGTTCCATGAGTCA 59.392 55.000 0.00 0.00 35.28 3.41
297 298 0.895530 TCGAGTGGGTTCCATGAGTC 59.104 55.000 0.00 0.00 35.28 3.36
298 299 1.573108 ATCGAGTGGGTTCCATGAGT 58.427 50.000 0.00 0.00 35.28 3.41
299 300 2.959030 TCTATCGAGTGGGTTCCATGAG 59.041 50.000 0.00 0.00 35.28 2.90
300 301 3.026707 TCTATCGAGTGGGTTCCATGA 57.973 47.619 0.00 0.00 35.28 3.07
301 302 3.819564 TTCTATCGAGTGGGTTCCATG 57.180 47.619 0.00 0.00 35.28 3.66
302 303 3.517901 TGTTTCTATCGAGTGGGTTCCAT 59.482 43.478 0.00 0.00 35.28 3.41
303 304 2.901192 TGTTTCTATCGAGTGGGTTCCA 59.099 45.455 0.00 0.00 0.00 3.53
304 305 3.259902 GTGTTTCTATCGAGTGGGTTCC 58.740 50.000 0.00 0.00 0.00 3.62
305 306 3.678548 GTGTGTTTCTATCGAGTGGGTTC 59.321 47.826 0.00 0.00 0.00 3.62
306 307 3.070446 TGTGTGTTTCTATCGAGTGGGTT 59.930 43.478 0.00 0.00 0.00 4.11
307 308 2.631062 TGTGTGTTTCTATCGAGTGGGT 59.369 45.455 0.00 0.00 0.00 4.51
308 309 2.993899 GTGTGTGTTTCTATCGAGTGGG 59.006 50.000 0.00 0.00 0.00 4.61
309 310 3.914312 AGTGTGTGTTTCTATCGAGTGG 58.086 45.455 0.00 0.00 0.00 4.00
310 311 4.799678 AGAGTGTGTGTTTCTATCGAGTG 58.200 43.478 0.00 0.00 0.00 3.51
311 312 4.762765 AGAGAGTGTGTGTTTCTATCGAGT 59.237 41.667 0.00 0.00 0.00 4.18
312 313 5.123186 AGAGAGAGTGTGTGTTTCTATCGAG 59.877 44.000 0.00 0.00 35.07 4.04
313 314 5.004448 AGAGAGAGTGTGTGTTTCTATCGA 58.996 41.667 0.00 0.00 35.07 3.59
314 315 5.123186 AGAGAGAGAGTGTGTGTTTCTATCG 59.877 44.000 0.00 0.00 35.07 2.92
315 316 6.374333 AGAGAGAGAGAGTGTGTGTTTCTATC 59.626 42.308 0.00 0.00 31.16 2.08
316 317 6.245408 AGAGAGAGAGAGTGTGTGTTTCTAT 58.755 40.000 0.00 0.00 0.00 1.98
317 318 5.626142 AGAGAGAGAGAGTGTGTGTTTCTA 58.374 41.667 0.00 0.00 0.00 2.10
318 319 4.469657 AGAGAGAGAGAGTGTGTGTTTCT 58.530 43.478 0.00 0.00 0.00 2.52
319 320 4.518970 AGAGAGAGAGAGAGTGTGTGTTTC 59.481 45.833 0.00 0.00 0.00 2.78
320 321 4.469657 AGAGAGAGAGAGAGTGTGTGTTT 58.530 43.478 0.00 0.00 0.00 2.83
321 322 4.072131 GAGAGAGAGAGAGAGTGTGTGTT 58.928 47.826 0.00 0.00 0.00 3.32
322 323 3.327757 AGAGAGAGAGAGAGAGTGTGTGT 59.672 47.826 0.00 0.00 0.00 3.72
323 324 3.942829 AGAGAGAGAGAGAGAGTGTGTG 58.057 50.000 0.00 0.00 0.00 3.82
324 325 4.640771 AAGAGAGAGAGAGAGAGTGTGT 57.359 45.455 0.00 0.00 0.00 3.72
325 326 5.964958 AAAAGAGAGAGAGAGAGAGTGTG 57.035 43.478 0.00 0.00 0.00 3.82
326 327 8.650143 ATTTAAAAGAGAGAGAGAGAGAGTGT 57.350 34.615 0.00 0.00 0.00 3.55
331 332 9.683069 GCTGATATTTAAAAGAGAGAGAGAGAG 57.317 37.037 0.00 0.00 0.00 3.20
332 333 9.194972 TGCTGATATTTAAAAGAGAGAGAGAGA 57.805 33.333 0.00 0.00 0.00 3.10
333 334 9.814899 TTGCTGATATTTAAAAGAGAGAGAGAG 57.185 33.333 0.00 0.00 0.00 3.20
334 335 9.814899 CTTGCTGATATTTAAAAGAGAGAGAGA 57.185 33.333 0.00 0.00 0.00 3.10
335 336 9.814899 TCTTGCTGATATTTAAAAGAGAGAGAG 57.185 33.333 0.00 0.00 0.00 3.20
350 351 9.812347 TGGGTAATCATTTATTCTTGCTGATAT 57.188 29.630 0.00 0.00 0.00 1.63
351 352 9.639563 TTGGGTAATCATTTATTCTTGCTGATA 57.360 29.630 0.00 0.00 0.00 2.15
352 353 8.537728 TTGGGTAATCATTTATTCTTGCTGAT 57.462 30.769 0.00 0.00 0.00 2.90
353 354 7.953005 TTGGGTAATCATTTATTCTTGCTGA 57.047 32.000 0.00 0.00 0.00 4.26
354 355 9.037737 CATTTGGGTAATCATTTATTCTTGCTG 57.962 33.333 0.00 0.00 0.00 4.41
355 356 8.980596 TCATTTGGGTAATCATTTATTCTTGCT 58.019 29.630 0.00 0.00 0.00 3.91
356 357 9.768662 ATCATTTGGGTAATCATTTATTCTTGC 57.231 29.630 0.00 0.00 0.00 4.01
364 365 9.253832 TGACACTTATCATTTGGGTAATCATTT 57.746 29.630 0.00 0.00 0.00 2.32
365 366 8.686334 GTGACACTTATCATTTGGGTAATCATT 58.314 33.333 0.00 0.00 0.00 2.57
366 367 7.833682 TGTGACACTTATCATTTGGGTAATCAT 59.166 33.333 7.20 0.00 0.00 2.45
367 368 7.120579 GTGTGACACTTATCATTTGGGTAATCA 59.879 37.037 8.76 0.00 0.00 2.57
368 369 7.472543 GTGTGACACTTATCATTTGGGTAATC 58.527 38.462 8.76 0.00 0.00 1.75
369 370 6.093495 CGTGTGACACTTATCATTTGGGTAAT 59.907 38.462 14.42 0.00 31.34 1.89
370 371 5.410132 CGTGTGACACTTATCATTTGGGTAA 59.590 40.000 14.42 0.00 31.34 2.85
371 372 4.932799 CGTGTGACACTTATCATTTGGGTA 59.067 41.667 14.42 0.00 31.34 3.69
372 373 3.751175 CGTGTGACACTTATCATTTGGGT 59.249 43.478 14.42 0.00 31.34 4.51
373 374 3.751175 ACGTGTGACACTTATCATTTGGG 59.249 43.478 14.42 0.00 31.34 4.12
374 375 4.213270 ACACGTGTGACACTTATCATTTGG 59.787 41.667 22.71 0.00 31.34 3.28
375 376 5.342806 ACACGTGTGACACTTATCATTTG 57.657 39.130 22.71 0.00 31.34 2.32
389 390 4.442073 GTGTTACTAACTACCACACGTGTG 59.558 45.833 36.13 36.13 45.23 3.82
390 391 4.339247 AGTGTTACTAACTACCACACGTGT 59.661 41.667 17.22 17.22 42.16 4.49
391 392 4.678287 CAGTGTTACTAACTACCACACGTG 59.322 45.833 15.48 15.48 42.16 4.49
392 393 4.794003 GCAGTGTTACTAACTACCACACGT 60.794 45.833 0.71 0.00 42.16 4.49
393 394 3.671928 GCAGTGTTACTAACTACCACACG 59.328 47.826 0.71 0.00 42.16 4.49
394 395 3.992427 GGCAGTGTTACTAACTACCACAC 59.008 47.826 0.71 0.00 38.43 3.82
395 396 3.007182 GGGCAGTGTTACTAACTACCACA 59.993 47.826 0.71 0.00 33.35 4.17
396 397 3.260128 AGGGCAGTGTTACTAACTACCAC 59.740 47.826 0.71 0.00 33.35 4.16
397 398 3.259876 CAGGGCAGTGTTACTAACTACCA 59.740 47.826 0.71 0.00 33.35 3.25
398 399 3.512724 TCAGGGCAGTGTTACTAACTACC 59.487 47.826 0.71 0.00 31.22 3.18
399 400 4.796038 TCAGGGCAGTGTTACTAACTAC 57.204 45.455 0.71 0.00 0.00 2.73
400 401 5.811796 TTTCAGGGCAGTGTTACTAACTA 57.188 39.130 0.71 0.00 0.00 2.24
401 402 4.699925 TTTCAGGGCAGTGTTACTAACT 57.300 40.909 0.71 0.00 0.00 2.24
402 403 5.959618 AATTTCAGGGCAGTGTTACTAAC 57.040 39.130 0.00 0.00 0.00 2.34
403 404 6.969993 AAAATTTCAGGGCAGTGTTACTAA 57.030 33.333 0.00 0.00 0.00 2.24
404 405 6.969993 AAAAATTTCAGGGCAGTGTTACTA 57.030 33.333 0.00 0.00 0.00 1.82
405 406 5.869649 AAAAATTTCAGGGCAGTGTTACT 57.130 34.783 0.00 0.00 0.00 2.24
406 407 9.135843 GTTATAAAAATTTCAGGGCAGTGTTAC 57.864 33.333 0.00 0.00 0.00 2.50
407 408 9.084533 AGTTATAAAAATTTCAGGGCAGTGTTA 57.915 29.630 0.00 0.00 0.00 2.41
408 409 7.962441 AGTTATAAAAATTTCAGGGCAGTGTT 58.038 30.769 0.00 0.00 0.00 3.32
409 410 7.539034 AGTTATAAAAATTTCAGGGCAGTGT 57.461 32.000 0.00 0.00 0.00 3.55
410 411 9.921637 TTTAGTTATAAAAATTTCAGGGCAGTG 57.078 29.630 0.00 0.00 0.00 3.66
449 450 7.529158 CAAGTTTCAGGCTTTTTGACATTTTT 58.471 30.769 0.00 0.00 0.00 1.94
450 451 6.403527 GCAAGTTTCAGGCTTTTTGACATTTT 60.404 34.615 0.00 0.00 0.00 1.82
451 452 5.065090 GCAAGTTTCAGGCTTTTTGACATTT 59.935 36.000 0.00 0.00 0.00 2.32
452 453 4.571984 GCAAGTTTCAGGCTTTTTGACATT 59.428 37.500 0.00 0.00 0.00 2.71
453 454 4.122046 GCAAGTTTCAGGCTTTTTGACAT 58.878 39.130 0.00 0.00 0.00 3.06
454 455 3.520569 GCAAGTTTCAGGCTTTTTGACA 58.479 40.909 0.00 0.00 0.00 3.58
455 456 2.866156 GGCAAGTTTCAGGCTTTTTGAC 59.134 45.455 0.00 0.00 0.00 3.18
456 457 2.499289 TGGCAAGTTTCAGGCTTTTTGA 59.501 40.909 0.00 0.00 0.00 2.69
457 458 2.903798 TGGCAAGTTTCAGGCTTTTTG 58.096 42.857 0.00 0.00 0.00 2.44
458 459 3.494924 GGATGGCAAGTTTCAGGCTTTTT 60.495 43.478 0.00 0.00 0.00 1.94
459 460 2.037641 GGATGGCAAGTTTCAGGCTTTT 59.962 45.455 0.00 0.00 0.00 2.27
460 461 1.620323 GGATGGCAAGTTTCAGGCTTT 59.380 47.619 0.00 0.00 0.00 3.51
461 462 1.260544 GGATGGCAAGTTTCAGGCTT 58.739 50.000 0.00 0.00 0.00 4.35
462 463 0.112995 TGGATGGCAAGTTTCAGGCT 59.887 50.000 0.00 0.00 0.00 4.58
463 464 0.968405 TTGGATGGCAAGTTTCAGGC 59.032 50.000 0.00 0.00 0.00 4.85
464 465 3.967332 ATTTGGATGGCAAGTTTCAGG 57.033 42.857 0.00 0.00 0.00 3.86
465 466 7.727331 TTTTTATTTGGATGGCAAGTTTCAG 57.273 32.000 0.00 0.00 0.00 3.02
490 491 9.284968 ACAGCTTTAGTTGTGAAGTATGTTAAT 57.715 29.630 0.00 0.00 38.07 1.40
491 492 8.671384 ACAGCTTTAGTTGTGAAGTATGTTAA 57.329 30.769 0.00 0.00 38.07 2.01
492 493 7.929245 TGACAGCTTTAGTTGTGAAGTATGTTA 59.071 33.333 3.88 0.00 39.59 2.41
493 494 6.765989 TGACAGCTTTAGTTGTGAAGTATGTT 59.234 34.615 3.88 0.00 39.59 2.71
494 495 6.288294 TGACAGCTTTAGTTGTGAAGTATGT 58.712 36.000 3.88 0.00 39.59 2.29
495 496 6.785488 TGACAGCTTTAGTTGTGAAGTATG 57.215 37.500 3.88 0.00 39.59 2.39
496 497 6.595716 GGATGACAGCTTTAGTTGTGAAGTAT 59.404 38.462 3.88 0.00 39.59 2.12
497 498 5.932303 GGATGACAGCTTTAGTTGTGAAGTA 59.068 40.000 3.88 0.00 39.59 2.24
498 499 4.757149 GGATGACAGCTTTAGTTGTGAAGT 59.243 41.667 3.88 0.00 39.59 3.01
499 500 4.999950 AGGATGACAGCTTTAGTTGTGAAG 59.000 41.667 3.88 0.00 39.59 3.02
500 501 4.973168 AGGATGACAGCTTTAGTTGTGAA 58.027 39.130 3.88 0.00 39.59 3.18
501 502 4.569943 GAGGATGACAGCTTTAGTTGTGA 58.430 43.478 3.88 0.00 39.59 3.58
502 503 3.369147 CGAGGATGACAGCTTTAGTTGTG 59.631 47.826 3.88 0.00 39.59 3.33
503 504 3.589988 CGAGGATGACAGCTTTAGTTGT 58.410 45.455 0.00 0.00 42.20 3.32
504 505 2.932614 CCGAGGATGACAGCTTTAGTTG 59.067 50.000 0.00 0.00 0.00 3.16
505 506 2.832129 TCCGAGGATGACAGCTTTAGTT 59.168 45.455 0.00 0.00 0.00 2.24
506 507 2.457598 TCCGAGGATGACAGCTTTAGT 58.542 47.619 0.00 0.00 0.00 2.24
507 508 3.742433 ATCCGAGGATGACAGCTTTAG 57.258 47.619 3.45 0.00 32.98 1.85
508 509 4.649674 AGTTATCCGAGGATGACAGCTTTA 59.350 41.667 23.27 0.00 41.66 1.85
509 510 3.452627 AGTTATCCGAGGATGACAGCTTT 59.547 43.478 23.27 5.23 41.66 3.51
510 511 3.034635 AGTTATCCGAGGATGACAGCTT 58.965 45.455 23.27 5.54 41.66 3.74
511 512 2.672098 AGTTATCCGAGGATGACAGCT 58.328 47.619 23.27 6.81 41.66 4.24
512 513 4.585955 TTAGTTATCCGAGGATGACAGC 57.414 45.455 23.27 4.86 41.66 4.40
513 514 8.979574 GTAAATTTAGTTATCCGAGGATGACAG 58.020 37.037 23.27 0.00 41.66 3.51
514 515 7.929785 GGTAAATTTAGTTATCCGAGGATGACA 59.070 37.037 23.27 10.76 41.66 3.58
515 516 7.929785 TGGTAAATTTAGTTATCCGAGGATGAC 59.070 37.037 16.45 16.45 40.18 3.06
516 517 8.025270 TGGTAAATTTAGTTATCCGAGGATGA 57.975 34.615 14.50 3.64 36.17 2.92
517 518 8.848474 ATGGTAAATTTAGTTATCCGAGGATG 57.152 34.615 14.50 0.00 36.17 3.51
518 519 8.656806 TGATGGTAAATTTAGTTATCCGAGGAT 58.343 33.333 9.80 9.80 38.54 3.24
519 520 8.025270 TGATGGTAAATTTAGTTATCCGAGGA 57.975 34.615 0.00 0.00 0.00 3.71
520 521 8.671384 TTGATGGTAAATTTAGTTATCCGAGG 57.329 34.615 0.00 0.00 0.00 4.63
545 546 2.031068 GCAATTTCGCCCAAACGTTTTT 59.969 40.909 11.66 0.00 0.00 1.94
546 547 1.595328 GCAATTTCGCCCAAACGTTTT 59.405 42.857 11.66 0.00 0.00 2.43
547 548 1.202475 AGCAATTTCGCCCAAACGTTT 60.202 42.857 7.96 7.96 0.00 3.60
548 549 0.387565 AGCAATTTCGCCCAAACGTT 59.612 45.000 0.00 0.00 0.00 3.99
549 550 0.387565 AAGCAATTTCGCCCAAACGT 59.612 45.000 0.00 0.00 0.00 3.99
550 551 1.059942 GAAGCAATTTCGCCCAAACG 58.940 50.000 0.00 0.00 0.00 3.60
574 575 0.445829 TGATAAATGCCACGCGTGTG 59.554 50.000 34.81 26.49 46.00 3.82
575 576 1.130373 CTTGATAAATGCCACGCGTGT 59.870 47.619 34.81 20.21 0.00 4.49
576 577 1.531677 CCTTGATAAATGCCACGCGTG 60.532 52.381 31.77 31.77 0.00 5.34
577 578 0.732571 CCTTGATAAATGCCACGCGT 59.267 50.000 5.58 5.58 0.00 6.01
578 579 0.732571 ACCTTGATAAATGCCACGCG 59.267 50.000 3.53 3.53 0.00 6.01
579 580 1.065551 GGACCTTGATAAATGCCACGC 59.934 52.381 0.00 0.00 0.00 5.34
580 581 2.364632 TGGACCTTGATAAATGCCACG 58.635 47.619 0.00 0.00 0.00 4.94
581 582 4.016444 TCTTGGACCTTGATAAATGCCAC 58.984 43.478 0.00 0.00 0.00 5.01
582 583 4.314522 TCTTGGACCTTGATAAATGCCA 57.685 40.909 0.00 0.00 0.00 4.92
583 584 4.038402 CCATCTTGGACCTTGATAAATGCC 59.962 45.833 0.00 0.00 40.96 4.40
584 585 4.646492 ACCATCTTGGACCTTGATAAATGC 59.354 41.667 0.00 0.00 40.96 3.56
585 586 6.780457 AACCATCTTGGACCTTGATAAATG 57.220 37.500 0.00 0.00 40.96 2.32
586 587 6.725834 ACAAACCATCTTGGACCTTGATAAAT 59.274 34.615 0.00 0.00 40.96 1.40
587 588 6.074648 ACAAACCATCTTGGACCTTGATAAA 58.925 36.000 0.00 0.00 40.96 1.40
588 589 5.640147 ACAAACCATCTTGGACCTTGATAA 58.360 37.500 0.00 0.00 40.96 1.75
589 590 5.253330 GACAAACCATCTTGGACCTTGATA 58.747 41.667 0.00 0.00 40.96 2.15
590 591 4.082125 GACAAACCATCTTGGACCTTGAT 58.918 43.478 0.00 0.00 40.96 2.57
591 592 3.486383 GACAAACCATCTTGGACCTTGA 58.514 45.455 0.00 0.00 40.96 3.02
592 593 2.558359 GGACAAACCATCTTGGACCTTG 59.442 50.000 0.00 3.92 40.96 3.61
593 594 2.176798 TGGACAAACCATCTTGGACCTT 59.823 45.455 0.00 0.00 44.64 3.50
594 595 1.780309 TGGACAAACCATCTTGGACCT 59.220 47.619 0.00 0.00 44.64 3.85
595 596 2.286365 TGGACAAACCATCTTGGACC 57.714 50.000 0.00 0.00 44.64 4.46
605 606 4.498513 CGAAAGGGTTAAAGTGGACAAACC 60.499 45.833 0.00 0.00 40.56 3.27
606 607 4.336153 TCGAAAGGGTTAAAGTGGACAAAC 59.664 41.667 0.00 0.00 0.00 2.93
607 608 4.525024 TCGAAAGGGTTAAAGTGGACAAA 58.475 39.130 0.00 0.00 0.00 2.83
608 609 4.153673 TCGAAAGGGTTAAAGTGGACAA 57.846 40.909 0.00 0.00 0.00 3.18
609 610 3.842007 TCGAAAGGGTTAAAGTGGACA 57.158 42.857 0.00 0.00 0.00 4.02
610 611 5.700722 AAATCGAAAGGGTTAAAGTGGAC 57.299 39.130 0.00 0.00 0.00 4.02
611 612 6.548251 AGAAAAATCGAAAGGGTTAAAGTGGA 59.452 34.615 0.00 0.00 0.00 4.02
612 613 6.745116 AGAAAAATCGAAAGGGTTAAAGTGG 58.255 36.000 0.00 0.00 0.00 4.00
613 614 9.908152 AATAGAAAAATCGAAAGGGTTAAAGTG 57.092 29.630 0.00 0.00 0.00 3.16
619 620 9.907229 AGATCTAATAGAAAAATCGAAAGGGTT 57.093 29.630 0.00 0.00 0.00 4.11
620 621 9.549078 GAGATCTAATAGAAAAATCGAAAGGGT 57.451 33.333 0.00 0.00 0.00 4.34
621 622 9.547753 TGAGATCTAATAGAAAAATCGAAAGGG 57.452 33.333 0.00 0.00 0.00 3.95
638 639 9.373450 AGATTCTTAGCATTAGGTGAGATCTAA 57.627 33.333 0.00 0.00 37.65 2.10
639 640 8.948401 AGATTCTTAGCATTAGGTGAGATCTA 57.052 34.615 0.00 0.00 37.65 1.98
640 641 7.854166 AGATTCTTAGCATTAGGTGAGATCT 57.146 36.000 0.00 0.00 37.65 2.75
641 642 9.988815 TTAAGATTCTTAGCATTAGGTGAGATC 57.011 33.333 6.26 0.00 37.65 2.75
708 709 5.821516 ACGTGTTTTGTTCATTGGAGTTA 57.178 34.783 0.00 0.00 0.00 2.24
709 710 4.712122 ACGTGTTTTGTTCATTGGAGTT 57.288 36.364 0.00 0.00 0.00 3.01
711 712 4.420168 ACAACGTGTTTTGTTCATTGGAG 58.580 39.130 0.00 0.00 36.22 3.86
715 716 8.522178 TTTTCTTACAACGTGTTTTGTTCATT 57.478 26.923 0.00 0.00 40.29 2.57
725 727 7.116662 TGACGCTTATATTTTCTTACAACGTGT 59.883 33.333 0.00 0.00 0.00 4.49
850 865 0.459585 TAGGTGCGGCGTGATCTTTC 60.460 55.000 9.37 0.00 0.00 2.62
871 889 1.109609 GTTAGAGGGTCGGTAGTGGG 58.890 60.000 0.00 0.00 0.00 4.61
888 907 0.519961 GACTGTTTTATGCGCGGGTT 59.480 50.000 8.83 0.00 0.00 4.11
889 908 1.632046 CGACTGTTTTATGCGCGGGT 61.632 55.000 8.83 0.00 0.00 5.28
891 910 0.247145 GTCGACTGTTTTATGCGCGG 60.247 55.000 8.83 0.00 0.00 6.46
892 911 0.247145 GGTCGACTGTTTTATGCGCG 60.247 55.000 16.46 0.00 0.00 6.86
925 1360 3.291162 GCTTCGATGTTAAGCGACTTC 57.709 47.619 0.00 0.00 45.28 3.01
1341 1783 2.989253 TGCTCGTCGAAGGCCTCA 60.989 61.111 5.23 0.00 0.00 3.86
1464 1906 2.039624 GAGGTCTCCCCCTGCTCA 59.960 66.667 0.00 0.00 34.03 4.26
1518 1960 2.285743 ACTTCCTCCTCCCTGCCC 60.286 66.667 0.00 0.00 0.00 5.36
1522 1964 2.112691 TCTTCTTCACTTCCTCCTCCCT 59.887 50.000 0.00 0.00 0.00 4.20
1551 1993 1.920835 GGTGGTGGCTTCCTCCTCT 60.921 63.158 11.20 0.00 37.97 3.69
1704 2146 6.035112 GCTAAACGAACTAAAGATCTCACTGG 59.965 42.308 0.00 0.00 0.00 4.00
1814 2260 9.928236 GCTAGTGTAACATACAAGTAGTACTAC 57.072 37.037 23.03 23.03 40.93 2.73
1815 2261 9.671279 TGCTAGTGTAACATACAAGTAGTACTA 57.329 33.333 2.50 0.00 40.93 1.82
1816 2262 8.457261 GTGCTAGTGTAACATACAAGTAGTACT 58.543 37.037 0.00 0.00 40.93 2.73
1817 2263 8.239314 TGTGCTAGTGTAACATACAAGTAGTAC 58.761 37.037 15.18 15.18 40.93 2.73
1879 2328 8.769891 CAAACCAAAATATTTACACCAAGGAAC 58.230 33.333 0.01 0.00 0.00 3.62
1880 2329 8.705594 TCAAACCAAAATATTTACACCAAGGAA 58.294 29.630 0.01 0.00 0.00 3.36
1899 2348 3.577848 CCATGAAGAACCCAATCAAACCA 59.422 43.478 0.00 0.00 0.00 3.67
1901 2350 4.871933 ACCATGAAGAACCCAATCAAAC 57.128 40.909 0.00 0.00 0.00 2.93
1906 2355 2.899256 CACCAACCATGAAGAACCCAAT 59.101 45.455 0.00 0.00 0.00 3.16
1907 2356 2.315176 CACCAACCATGAAGAACCCAA 58.685 47.619 0.00 0.00 0.00 4.12
1911 2360 3.820467 TCATGACACCAACCATGAAGAAC 59.180 43.478 0.00 0.00 44.12 3.01
1916 2365 4.019411 ACATACTCATGACACCAACCATGA 60.019 41.667 0.00 0.00 44.66 3.07
1936 2387 4.697828 TCCATTTGCATAACGTACACACAT 59.302 37.500 0.00 0.00 0.00 3.21
1942 2393 5.163703 TGGACATTCCATTTGCATAACGTAC 60.164 40.000 0.00 0.00 42.67 3.67
2027 2642 6.989437 AGTCATGTAAATCGAACATTGTACG 58.011 36.000 0.00 0.00 35.39 3.67
2031 2646 7.848051 GCTTCTAGTCATGTAAATCGAACATTG 59.152 37.037 0.00 0.00 35.39 2.82
2068 2683 3.131396 CACACAAAGTAGGACCAGACAC 58.869 50.000 0.00 0.00 0.00 3.67
2142 2758 9.366216 TGTGTACATCATGTAGATCACTTAAAC 57.634 33.333 14.77 0.00 32.84 2.01
2206 2823 3.602608 ACCATGGCATAGACCTATTCCT 58.397 45.455 13.04 0.00 31.41 3.36
2216 2833 8.872845 GTTCTTTCAATAAAAACCATGGCATAG 58.127 33.333 13.04 0.00 0.00 2.23
2242 2859 7.972527 TGAGTTCAACCACATGAAAATTTTTG 58.027 30.769 4.63 3.03 40.76 2.44
2244 2861 7.278424 CACTGAGTTCAACCACATGAAAATTTT 59.722 33.333 2.28 2.28 40.76 1.82
2247 2864 5.593909 TCACTGAGTTCAACCACATGAAAAT 59.406 36.000 0.00 0.00 40.76 1.82
2256 2875 7.169158 AGAAAAATTTCACTGAGTTCAACCA 57.831 32.000 8.47 0.00 39.61 3.67
2268 2888 8.758715 GCATGCAATCCTATAGAAAAATTTCAC 58.241 33.333 14.21 0.00 39.61 3.18
2325 2945 7.168219 GGCATGTTTGGTCTCTATGGATATAA 58.832 38.462 0.00 0.00 0.00 0.98
2331 2951 3.003394 TGGCATGTTTGGTCTCTATGG 57.997 47.619 0.00 0.00 0.00 2.74
2338 2958 3.059166 GTTTGTCATGGCATGTTTGGTC 58.941 45.455 25.62 10.51 0.00 4.02
2352 2972 3.030291 ACAAGGCTCATTTGGTTTGTCA 58.970 40.909 0.00 0.00 0.00 3.58
2385 3005 8.721019 TCGGAATTTTTCATACGTATACCTTT 57.279 30.769 7.96 0.00 0.00 3.11
2441 3061 9.920946 ATCATAAATTACTTAGGGCTTCTTTGA 57.079 29.630 0.00 0.00 0.00 2.69
2479 3099 6.985188 AGCGCAATACCCTATGTAATTATG 57.015 37.500 11.47 0.00 31.94 1.90
2509 3129 2.860735 GACTCGCTAGCACCAAGTTATG 59.139 50.000 16.45 0.00 0.00 1.90
2510 3130 2.159085 GGACTCGCTAGCACCAAGTTAT 60.159 50.000 16.45 0.00 0.00 1.89
2548 3168 7.918536 AGGCTCAAGTCTTATGCATATATTG 57.081 36.000 7.36 10.08 0.00 1.90
2577 3197 4.706962 ACCTAAAATGATTTGAGGTCAGCC 59.293 41.667 19.27 0.00 32.09 4.85
2578 3198 5.904362 ACCTAAAATGATTTGAGGTCAGC 57.096 39.130 19.27 0.00 32.09 4.26
2579 3199 7.308435 GTCAACCTAAAATGATTTGAGGTCAG 58.692 38.462 23.85 19.20 34.37 3.51
2580 3200 6.072728 CGTCAACCTAAAATGATTTGAGGTCA 60.073 38.462 23.85 13.01 34.37 4.02
2581 3201 6.314784 CGTCAACCTAAAATGATTTGAGGTC 58.685 40.000 23.85 12.80 34.37 3.85
2582 3202 5.183140 CCGTCAACCTAAAATGATTTGAGGT 59.817 40.000 19.27 19.27 35.69 3.85
2583 3203 5.640732 CCGTCAACCTAAAATGATTTGAGG 58.359 41.667 18.00 18.00 33.76 3.86
2584 3204 5.095490 GCCGTCAACCTAAAATGATTTGAG 58.905 41.667 0.00 0.00 0.00 3.02
2585 3205 4.764823 AGCCGTCAACCTAAAATGATTTGA 59.235 37.500 0.00 0.00 0.00 2.69
2586 3206 4.858692 CAGCCGTCAACCTAAAATGATTTG 59.141 41.667 0.00 0.00 0.00 2.32
2587 3207 4.764823 TCAGCCGTCAACCTAAAATGATTT 59.235 37.500 0.00 0.00 0.00 2.17
2588 3208 4.156008 GTCAGCCGTCAACCTAAAATGATT 59.844 41.667 0.00 0.00 0.00 2.57
2589 3209 3.689649 GTCAGCCGTCAACCTAAAATGAT 59.310 43.478 0.00 0.00 0.00 2.45
2590 3210 3.071479 GTCAGCCGTCAACCTAAAATGA 58.929 45.455 0.00 0.00 0.00 2.57
2591 3211 2.161609 GGTCAGCCGTCAACCTAAAATG 59.838 50.000 0.00 0.00 0.00 2.32
2592 3212 2.224670 TGGTCAGCCGTCAACCTAAAAT 60.225 45.455 0.00 0.00 37.67 1.82
2593 3213 1.141254 TGGTCAGCCGTCAACCTAAAA 59.859 47.619 0.00 0.00 37.67 1.52
2594 3214 0.759959 TGGTCAGCCGTCAACCTAAA 59.240 50.000 0.00 0.00 37.67 1.85
2595 3215 0.981183 ATGGTCAGCCGTCAACCTAA 59.019 50.000 0.00 0.00 37.67 2.69
2596 3216 0.249120 CATGGTCAGCCGTCAACCTA 59.751 55.000 0.00 0.00 37.67 3.08
2597 3217 1.003355 CATGGTCAGCCGTCAACCT 60.003 57.895 0.00 0.00 37.67 3.50
2628 3269 3.146066 TGTGTAATCCTTGCTTGACCAC 58.854 45.455 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.