>input_sequence_72007
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-ATGGGCAAGGGCAAGGTCCACCCGTCGCCGTCGCCACCGGTGGCCGGCGGCGAGACGGCGAAGGGGGTGCTCCTCCGGC
TGCTCCCCGCGGTCGTGCTCGCCATGGCGGCGCCGCTGGGGCCCGAGGGGAAGGAGGTGCTCGCGTACCTTGTCCTCGCC
TCGCTGCGCTCCTCGGCGCCGCCCACGCCGGCGAGGGAGGAGCTCTCCGCGGCTGGGGAGGGCTGCGGGAAGAAGCCCCA
CCGTCCGGAGCTCGGGTGCGGGTGCTTCGGGTGCTACACGGCGTACTGGTCGCGCTGGGACGGGTCCCCGGAGCGCGACC
GCGAGGCGATTCACCGGGCCATTGAGGCCTTCGACGAGCACCTGGCCCGGCAGGAGGAGGGGAAGGGTGGCCGCCGCCGC
AAGAAGCGAGCGGCCTCCTCCAGGGGCAAGGCCAAGGCGTCGGCGGCCGTTGACCCTCCGCTGCCTGAGCAGGGGGAGAC
CTCGGACGCCGCGGCTCCTGTGCTGGCGGAGGTGGTTGAGGGCAGGGAGGAGGAAGTGAAGAAGACGGTGGAAGAGGAGG
AAGCCACCACCGCGTCTTGCGCCCGCGACGACGTCCCGGAGGAGCGCAGGCGCCGGGTGTGGGGCGCGGTCGCCGGCGTG
TTCAACTGGAGGGGATGGGGCCTGTGGGGGTCCCACTAG-----------------------------------------
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>chr4B_1_TraesCS4B01G349400
AGAAGACGTGGGGCTCCCCAAAGACTTCAATATTTCTTTTCCTTCTTTCGGATTTTTTTGGAAGTGGACATATTCTAATT
TAGAGTTTTCTGCCTTTTCCACACAAAAATATGTCATGGATAATGTTTTTAGCATAAACGGTTTTGTAAAATCTCATTTA
CATGTTTTCTGGCACTCGTGTCCTTTTTTTTTTTGAATTAGTCTCGTGTCCTTTTGTTGATGTGTATCCGGTGTTTTGCC
CTTTGACCATGTGTGTATGAAGGGGTGGTTCATTTTGCCCCTCTATGCACGGTCATTGACTCATGGAACCCACTCGATAG
AAACACACACTCTCTCTCTCTCTCTTTTAAATATCAGCAAGAATAAATGATTACCCAAATGATAAGTGTCACACGTGTGG
TAGTTAGTAACACTGCCCTGAAATTTTTATAACTAAAATTATCATCCAAAAAAATGTCAAAAAGCCTGAAACTTGCCATC
CAAATAAAAAATTAACATACTTCACAACTAAAGCTGTCATCCTCGGATAACTAAATTTACCATCAAAAAACGTTTGGGCG
AAATTGCTTCGTGCCACACGCGTGGCATTTATCAAGGTCCAAGATGGTTTGTCCACTTTAACCCTTTCGATTTTTCTATT
AGATCTCACCTAATGCTAAGAATCTTAAAAAAAACAATATATACATAATTCTAGAAAATCTAGTACCTTAACTCCAATG-
AACAAAACACGTTGTAAGAAAATATAAGCGTCAAAATCAT------------ATGAGCCCTAGCCAACAGAGCTTCGGCC
GATTGGTGGCTTTATCAGATGA-TCCATCCGCCGGCCAGACCGTCCCCACGCCATCACGGTCACGAAAGATCACGCC---
GCACCTAACCCACTACCGACCCTCT-AACCCGCGCATAAAAC--------------------------------------
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------------------------------------------------------AGTCGACCCCACCTGAA----CCCAG
AAGTCGCTTAACATCGAAGCAATCCCACCAGAAAA-------AAAAACATCGAGAGGCTTTCGGGAGACAATCTCCAAGA
AATGGGCAAGGGCAAGGTCCACCCGTCGCCGTCGCCACCGGTGGCCGGCGGCGAGACGGCGAAGGGGGTGCTCCTCCGGC
TGCTCCCCGCGGTCGTGCTCGCCATGGCGGCGCCGCTGGGGCCCGAGGGGAAGGAGGTGCTCGCGTACCTTGTCCTCGCC
TCGCTGCGCTCCTCGGCGCCGCCCACGCCGGCGAGGGAGGAGCTCTCCGCGGCTGGGGAGGGCTGCGGGAAGAAGCCCCA
CCGTCCGGAGCTCGGGTGCGGGTGCTTCGGGTGCTACACGGCGTACTGGTCGCGCTGGGACGGGTCCCCGGAGCGCGACC
GCGAGGCGATTCACCGGGCCATTGAGGCCTTCGACGAGCACCTGGCCCGGCAGGAGGAGGGGAAGGGTGGCCGCCGCCGC
AAGAAGCGAGCGGCCTCCTCCAGGGGCAAGGCCAAGGCGTCGGCGGCCGTTGACCCTCCGCTGCCTGAGCAGGGGGAGAC
CTCGGACGCCGCGGCTCCTGTGCTGGCGGAGGTGGTTGAGGGCAGGGAGGAGGAAGTGAAGAAGACGGTGGAAGAGGAGG
AAGCCACCACCGCGTCTTGCGCCCGCGACGACGTCCCGGAGGAGCGCAGGCGCCGGGTGTGGGGCGCGGTCGCCGGCGTG
TTCAACTGGAGGGGATGGGGCCTGTGGGGGTCCCACTAGTCGGTGACGCAAGCCGATATTCCTCGCCAGTGAGATCTTTA
GTTCGTTTAGCCGGTTGGTGGGCTTGATG-TTCTGTTGGGGTTTTAGGTTTGAT-TAGTCAGTCAAATCGGTATTATATT
TTTTTC--CATGTATACTAGTAGTACTACTTGTATGTTACACTAGCACAATGAT---AATAATGGTGGTGTGGTGGTCAT
GTATTTGGTTCCTTGGTGTAAATATTTTGGTTTGATTGGGTTCTT--CATGGTTGGTGTCATGAGTATGTGTGTACGTTA
TGCAAATG----GAATGTCCATTTAATGGTAAGTGGTGAAG-----GGTTCAAGAATTTTGCAGTATTTTTGTAGCATT-
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------------------------------------------------------------------------TTTT--CT
ACGTACAATGTTCGATTTACATGACTAGAAGCCGTATGGTTTGTGTCT-GGTCCTACTTTGTGTGCAAATTCTATAGGAA
CATTTTATTGAGTTCAACTTTATGAAAATTTTACTTTGTTTAAGTGATCTACATGATGTACACAATAGTTGTGCCATGGG
GGAAATGCAGGATT-TTTTTAGAGGAATAGGTCTATGCCATGGTTTTTATTGAAAGAACAAAAA--TTTTCATGTGGTTG
AACTC-AGTGAAATTTTTCTATAGGATTGCATGCAAAATAGGTCAGAGGAAAAATTCATATGATTTATATCCATAGAGAC
CAAACATGCCATGACAAACCAAATGAGCCTTGTATACCTAGACAAAAGGTATACGTATGAAAAATTCCGAAGGAATAGAA
TCCTACAAAATTTCTTTGAATCAAAGAAGCCCTAAGTAATTTATGATTCAACTCTAACCATAATTACATAGGGTATTGCG
CTTATAAACATAACTTGGTGCTAGCGAGTCCAAGTATAGTTGTATGCCAATATATGCATAAGACTTGAGCCTTCTAGGCT
GACCTCAAATCATTTTAGG---------------------TTGACGGCTGACCATGACATGTCAACGAGTGGTCAAGCAA
GGATTACACATAAGCAGGATCTAAGCAAATGTATTTAG
>chr5A_667
AAATAA--------------------------------------------------------------------------
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-------------------------------AACCAATATATACATGATTCTAGAAAATATAGTACCTCCATTCCTATGA
AACAAATCACGTTGTAAGAAAATATAAGCGTCAACATCAT------------ATGAGCCCTAGCCAACAGAGCTTCGGCC
GATGTGTGGCTTTGTCAGAATCGTCCATCCGCCGGCCAGACCGTCCCCACGCCATCACGGTCACAAAAGATGGTCCCGTT
GCACCTAATCCACCACCGACCCTCT-CCCTTGCGCATAAGGCCGGTTATAATGGGAAGTATCATACATATGATACTAGTC
TATGATATTACTCTCTCCGTTTCTAAATATTTGTCTTTCTGAAGGTTTCAAATGGTGACTACATACGGAGCAAAATGAGT
GAATCTACACTTTAAAAAATGTCTATATATATCCGTATGTGGTGACCATTTAAAATATCTAGAAAGACAAATATTTAGGA
ACGGAGGAGTATATCCCTAATGCATAGTATCATAAGTTGGTATTATAGGAGACTAAATTTTATTGCCATGCATGATATAA
AATAGCATATCATTTAATATGATACGGTATCATGATACGATACTCAAGCCTCTCTTTCTTTATTTAATTCTATGTCACCT
CACCAAACTTGCTTAGTTGGCATGCATGATACTTATGGGCAGCCTAATAAAACTAGTCGACCCCACCTGAA----CCCAA
AAGTCGCTTAACATCGAAGCAATCTCAGAAAGGAA-------AAAAACATCGAGAGGCTTTCGGGAGACAATCTCCAAGA
AATGGGCAAGGGCAAGGTCCACCCGTCGCCGTCGCCGTCGGCGGCCGGCGGCGAGACGGCGGAGGGGGTGCTCCTCCGGC
TGCTCCCCGCGGTCGTGCTCGCCATGGCGGCGCCGCTGGGGCCCGAGGGGAAGGAGGTGCTCGCGTACCTCGTCCTCGCC
TCGCTGCGCTCCTCGGCGCCGCCCACGCCGGCGAGGGAGGAGCCCTCCGCGGCCGGGGAGGGGTGCGGGCGGAAGCCCCA
CCGCCCGGAGCTCGGGTGCGGGTGCTTCGGGTGCTACACGGCCTACTGGTCGCGCTGGGACGGGTCCCCGGAGCGCGACC
GCGAGGCGATTCACCGGGCCATCGAGGCCTTCGACGAGCACCTGGCCCGGAAGGAGGAGGGCAAGGGTGGCCGCCGCCGC
AAGAAGCGAGCAGCCTCCTCCAAGGGCAAGGCCAAGGCGTCGGCCGCCGTTGACCCTCAGCTGCCGGAGCAGGGGGAGAC
CTCGGCCGCCGCGGCTCCTGTGCTGGCGGAGGTGGTTGAAGGCGGGGAGGAGGTAGTGAAGAAGACGGTGGAGGAGGAGG
AAGAAACCACCGCGGCCTGCGCCCGCGACGACGTTCCGGAGGAGCGCAGGCGGCGGGTGTGGGGCGCGGTCGCCGGCGTG
TTCAACTGGAGGGGATGGGGCCTGTGGGGGTCCCACTAGTCGGTGACGCGAGCCGATATTCCTCGTCAGTGAGATCTTTA
GTTCGTTTAGCCGGTTGGTGGGCTTGATGTTTCTGTTGGGGTTTTAGGTTTGAAATAGTCAGTCAAATCGGTATTGGATT
TTTTTT--CATGTACAC------TACTACTTGTATGTTACACTAGCACAATGATGATAATAATGGTGGTGTGGTGGTCAT
GTATTTGCCTCCTTGGTGTAAATATTTGGATTTGGATGGATTCTCCACATGGTTGGTGTCATGAGTGTGTGTACATATTA
TGCAAATGGTGTGAATGCCCATTTAATGGTAAGTGGTGTCATGGTTGGTTCAAGAATTTCACAGTATTTTTGTATGATT-
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------------------------------------------------------------------------TTTTTTCT
ATGTAGAATGTTCGATTTACATGACTAGAAGCCGTATGGTTTTTGTCTAGGTCCTACGTTGTGTGCAAATTCCGTAGGAA
GATTTTATTGAGTTCAACTTTATGAAAACTTTACTTTCTTTAAGTGATCTACATGATGTACACAATAGTTGTGCCATGGG
GAAAATGCAGGATAATTTTTAGGGGAATAGGTGTATGCCATAACTTTTATTATAAGAAAAGT-TTTTTTTCATGAGGTTG
AACTCCAATTAATTTTTTCTATAGGATTGCATGCAAAATAGGCCAGCGGAAAAATTCCTATGATCTATATTCATAGAAAC
CAAACATGCCAAGACAAACCAAATGAGCCTTGTATACCCAGACAGAAGGTATACATATGTAAAATTCCAAAGGAATAGAA
TCCTACAAAATTCCTTTGAACCAAAGAAGCGCTATGTAATTTATGATTTATCTCTAACTATAATTACATAGGGTATTGCG
CTTATAAAAGTAACTTGGTGCTAGCGAGTCCAAGCATAGTTGTATGCTAATATATGCATAAGACTTGGGCCCTCTA----
-----------------GG---------------------TTGACGGCTGACCATGACATGTCAACGAATGGTCAAGCAA
GGATTACACATAAGCAGGATCTAAGCAAATGTATTTAG
>chr4D_700
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-----------------------------------------------------------CTAGTACCTCCATTCCTATGA
AACAAATCACCTTGTAAGAAAATATAAGCGTCAAAATCACACACTCCATCGGATGAGCCCTGGCCAACAGAGCTTCGGCC
GATTGGTGGCTTTACCAGATGA-TCCATCCGCCGGCCAGGCCGTCCCCACGCCATCACGGTCACAAAAGATCACGCC---
GCACCTAATCCACTACCGACCCTCTTCCCTTGCGCATAAAAC--------------------------------------
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------------------------------------------------------AGTCGACCCCACCTGAATGAGCCCAA
AAGTCGCTTAACATCGAAGCAATCTCACCAGAAAAGAAAAAGAAAAACATCGAGAGGCTTTCGGGAGACAATCTCCAAGA
AATGGGCAAGGGCAAGGTCCACCCGTCGCCGTCGCCGCCGGCGGCCGGCGGCGAGACGGCGGAGGGGGTGCTCCTCCGGC
TGCTCCCCGCGGTCGTGCTCGCCATGGCGGCGCCGCTGGGGCCCGAGGGGAAGGAGGTGCTCGCGTACCTCGTCCTCGCC
TCGCTGCGCTCCTCGGCGCCGCCCACGCCGGCGAGGGAGGAGCCCTCCGCGGCCGGGGAGGGGTGCGGGAGGAAGCCCCA
CCGCCCGGAGCTCGCGTGCGGCTGCTTCGGGTGCTACACGGCGTACTGGTCGCGCTGGGACGGGTCCCCGGAGCGCGACC
GCGAGGCGATTCACCGGGCCATAGAGGCCTTCGACGAGCACCTGGCCCGGCAGGAGGAGGGGAAGGGTGGCCGCCGCCGC
AAGAAGCGAGCTGCCTCCTCCAAGGGCAAGGCCAAGGCGTCGGCCGCCGTTGACCCTACGCTGCCGGAGCAGGGGGAGAC
CTCGGCCGCCGCGGCTCCTGTGCTGGCGGAGGTGGTTGAAGGCGGGGAGGAGGAAGTGAAGAAGACGGTGGAGGAGGAGG
GAGCCACCACCGCGGCTTGCGCCCGCGACGACGCTCCGGAGGAGCGCAGGCGGCGCGTGTGGGGCGCGGTCGCCGGCGTG
TTCAACTGGAGGGGATGGGGCCTGTGGGGGTCCCACTAGTCGGTGACGCCAGCCGATATTCCTCGTCAGTGAGATCTTTA
GTTCGTTTAGCCGGTTGGTGGGCTTGATG-TTCTGTTGGGGTTTTAGGTTTGAT-TAGTCAGCCAAATCGGTATTGGATT
TTTTTTTTCATGTACAC------TACTACTTGTATGTTACACTAGCACAATGAT---AATAATGGTG-------------
-------------------------------------------------------------------TGTGTATACATTA
TGCAAATGGTGTGAATGTCCATTTAATGGCAAGTGTTGAAG-----GGTTCAAGAATTTCACAGTATTTTTGTACTCCCT
CCATTCCTAAATATAAGTCTTTTTAGAGATTACACTGCGAACTACATATACGGAGCAAAATGAGTGAATCTACACTCTAA
AGTTTTGCTCTGTATGTAGTCCGTAATGGAATCTCTAAAAGGACTTATATTTAGGAACTGAGGAAGTAGGGGTTTTTTCT
ATGTAGAATGTTTGATTTACATGACTAGAAGCCGAATGGTTTTTGTCTAGGTACTACGTTGTGTGCAAATTCTATACGAA
CATTTTATTGAGTTCAACTTTATGAAAATTTTACTTTCATTAAATGATCTACATGATGTACACAATAGTTGTGCCATGGG
GAAAATGCGGGATT-TTTTTAGGGGAATAGGTGTATGCCACAGTTTTTACTGAAAGAAAAGAATTTTTTTCATGAGGATG
AACTC-AATGAAATTTTTCTATAGGATT-----CAAAATAGGCCAGAGGAAAAATTCCTATGATCTATATTCGTAGAAAC
CAAACATGCCAAAACAAACAACATGAGCCTTTTATACCTACATAGAAGGTATACGTATGGAAAATTCGGAAGGAATAGAA
TCCTACAAAATTCCTTTGAACAAAAGAAGCCCTAAGTAATTTATGATTCATCTCTAACTATAATTAGATAGGGTATCACA
CTTATGAAAGTAACTTGGTGCTAGCGAGTCCAAGCATAGTTGTATGCTAATATATGCATAAGACTTGGGCCTTCTA----
-----------------GGGTGACCTCAAATCATTTTAGGTTGACGGTTGACCACGACATGCCAACGAATGGTCAAGCAA
GGATTACACATAAGCAGGGTCTAAGCAAATGTATTTAG
>SNPs
-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------S---------------------SS-S---S----
------S-------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------S-----------------SS-SS-------------------------------------------------
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-------------------------------------------------------------------------------S
------------------------S-------------------------------------------------------
------------------------------------S----S-------------------S------------------
----------------------------------------------------------------------S---------
-------------------------------------------S---------S--------S-------S---------
---S----------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----------S----------S---------------------S--------------------S--------------
-----S---------------------------------S---S----------------------------S-------
--------------S-------------------S-----------------S---------------------------
-------------------------------------------------S---------------S--------------
---------------------------------------------------------------------------SS---
-----S--------S--SSSSSS---------------------------------------------------------
-------SS------------------S-S----SS---S----S---------------------S-----S---S---
-----------------------------------------------------------SS-------------SS----
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-S---S------------------------------------S--------------S----------------------
-------------------------------------S------------------------------------------
-S--------------------S---------S--------S----------------S-S--S----------S-----
-------S----------------------------------S--------------S------S-----S------S--
-----------S--------------------------------S--------------S--------------------
------------S-------S-----------------------------S-------S---------------------
--------SS------------------------S------------S-------------------S--------SSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------S-----------
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>forward_256
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----------------------------------------------------------------------------TGCC
CTTTGACCATGTGTGT----------------------------------------------------------------
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>reverse_1993
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------------------------------------------------------------------------AGAGGAGG
AAGCCACCACC---------------------------------------------------------------------
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>forward_482
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--------------------------------------------------------------AGCCTGAAACTTGCCATC
CA------------------------------------------------------------------------------
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>reverse_2356
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-----------------------------------TTGGGTTCTTCATGGTTGGTG------------------------
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