Multiple sequence alignment - TraesCS4B01G335400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G335400 chr4B 100.000 3323 0 0 1 3323 626408364 626411686 0.000000e+00 6137.0
1 TraesCS4B01G335400 chr4D 84.994 1686 92 65 1570 3187 488709358 488710950 0.000000e+00 1563.0
2 TraesCS4B01G335400 chr4D 85.565 575 44 23 748 1294 488708632 488709195 1.730000e-157 566.0
3 TraesCS4B01G335400 chr4D 93.103 87 1 3 593 674 488708153 488708067 4.500000e-24 122.0
4 TraesCS4B01G335400 chr4D 94.203 69 4 0 3184 3252 488711667 488711735 4.530000e-19 106.0
5 TraesCS4B01G335400 chr5A 79.820 1110 97 62 1443 2502 670501339 670502371 0.000000e+00 691.0
6 TraesCS4B01G335400 chr5A 82.960 804 49 33 528 1294 670500029 670500781 0.000000e+00 645.0
7 TraesCS4B01G335400 chr5A 81.090 312 41 14 2592 2891 670502396 670502701 1.990000e-57 233.0
8 TraesCS4B01G335400 chr5A 100.000 36 0 0 3253 3288 445581706 445581741 2.140000e-07 67.6
9 TraesCS4B01G335400 chr7A 97.222 72 1 1 3250 3321 57596512 57596442 1.620000e-23 121.0
10 TraesCS4B01G335400 chr7A 97.059 68 2 0 3253 3320 457632777 457632844 7.530000e-22 115.0
11 TraesCS4B01G335400 chr7A 100.000 40 0 0 3254 3293 704905872 704905911 1.280000e-09 75.0
12 TraesCS4B01G335400 chr6A 94.203 69 3 1 3253 3321 515381513 515381580 1.630000e-18 104.0
13 TraesCS4B01G335400 chr1A 94.203 69 3 1 3254 3321 134810100 134810168 1.630000e-18 104.0
14 TraesCS4B01G335400 chr1A 97.500 40 1 0 3254 3293 16031118 16031079 5.950000e-08 69.4
15 TraesCS4B01G335400 chr3A 97.500 40 1 0 3254 3293 621603589 621603628 5.950000e-08 69.4
16 TraesCS4B01G335400 chr3A 100.000 36 0 0 3253 3288 506810619 506810584 2.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G335400 chr4B 626408364 626411686 3322 False 6137 6137 100.000 1 3323 1 chr4B.!!$F1 3322
1 TraesCS4B01G335400 chr4D 488708632 488711735 3103 False 745 1563 88.254 748 3252 3 chr4D.!!$F1 2504
2 TraesCS4B01G335400 chr5A 670500029 670502701 2672 False 523 691 81.290 528 2891 3 chr5A.!!$F2 2363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 939 0.673437 CTGCTCTGCTCCTAGCTACC 59.327 60.0 0.03 0.0 42.97 3.18 F
1313 1375 0.170339 CGTACTGCATGGACTCGTCA 59.830 55.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2769 0.039437 ACTAACACTCGTGTCAGCCG 60.039 55.0 2.81 0.0 44.13 5.52 R
2502 3103 0.101399 CTCCGTCTCCGTCCATCAAG 59.899 60.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.862924 CAGACGGTGAACAAGTATTTGAT 57.137 39.130 4.81 0.00 37.73 2.57
23 24 6.961359 CAGACGGTGAACAAGTATTTGATA 57.039 37.500 4.81 0.00 37.73 2.15
24 25 6.993878 CAGACGGTGAACAAGTATTTGATAG 58.006 40.000 4.81 0.00 37.73 2.08
25 26 6.811665 CAGACGGTGAACAAGTATTTGATAGA 59.188 38.462 4.81 0.00 37.73 1.98
26 27 7.492669 CAGACGGTGAACAAGTATTTGATAGAT 59.507 37.037 4.81 0.00 37.73 1.98
27 28 7.492669 AGACGGTGAACAAGTATTTGATAGATG 59.507 37.037 4.81 0.00 37.73 2.90
28 29 6.538742 ACGGTGAACAAGTATTTGATAGATGG 59.461 38.462 4.81 0.00 37.73 3.51
29 30 6.538742 CGGTGAACAAGTATTTGATAGATGGT 59.461 38.462 4.81 0.00 37.73 3.55
30 31 7.465916 CGGTGAACAAGTATTTGATAGATGGTG 60.466 40.741 4.81 0.00 37.73 4.17
31 32 7.552687 GGTGAACAAGTATTTGATAGATGGTGA 59.447 37.037 4.81 0.00 37.73 4.02
32 33 8.946085 GTGAACAAGTATTTGATAGATGGTGAA 58.054 33.333 4.81 0.00 37.73 3.18
33 34 8.946085 TGAACAAGTATTTGATAGATGGTGAAC 58.054 33.333 4.81 0.00 37.73 3.18
34 35 8.862325 AACAAGTATTTGATAGATGGTGAACA 57.138 30.769 4.81 0.00 37.73 3.18
35 36 9.466497 AACAAGTATTTGATAGATGGTGAACAT 57.534 29.630 4.81 0.00 39.00 2.71
49 50 9.685276 AGATGGTGAACATATTTTCAATAGACA 57.315 29.630 5.88 2.40 40.72 3.41
93 94 7.956420 TGTGATGAACATTTTCTTAGTACGT 57.044 32.000 0.00 0.00 32.36 3.57
95 96 9.135843 TGTGATGAACATTTTCTTAGTACGTAG 57.864 33.333 0.00 0.00 32.36 3.51
96 97 9.136952 GTGATGAACATTTTCTTAGTACGTAGT 57.863 33.333 8.23 8.23 37.28 2.73
97 98 9.135843 TGATGAACATTTTCTTAGTACGTAGTG 57.864 33.333 13.27 0.00 35.61 2.74
98 99 9.350357 GATGAACATTTTCTTAGTACGTAGTGA 57.650 33.333 13.27 3.87 35.61 3.41
99 100 9.701098 ATGAACATTTTCTTAGTACGTAGTGAA 57.299 29.630 13.27 6.17 35.61 3.18
100 101 8.971321 TGAACATTTTCTTAGTACGTAGTGAAC 58.029 33.333 13.27 0.00 35.61 3.18
101 102 8.876275 AACATTTTCTTAGTACGTAGTGAACA 57.124 30.769 13.27 2.94 45.73 3.18
102 103 9.485206 AACATTTTCTTAGTACGTAGTGAACAT 57.515 29.630 13.27 5.03 45.73 2.71
103 104 9.485206 ACATTTTCTTAGTACGTAGTGAACATT 57.515 29.630 13.27 0.00 45.73 2.71
104 105 9.953825 CATTTTCTTAGTACGTAGTGAACATTC 57.046 33.333 13.27 0.00 45.73 2.67
105 106 8.524870 TTTTCTTAGTACGTAGTGAACATTCC 57.475 34.615 13.27 0.00 45.73 3.01
106 107 5.872635 TCTTAGTACGTAGTGAACATTCCG 58.127 41.667 13.27 0.00 45.73 4.30
107 108 5.412594 TCTTAGTACGTAGTGAACATTCCGT 59.587 40.000 13.27 0.00 45.73 4.69
108 109 4.510038 AGTACGTAGTGAACATTCCGTT 57.490 40.909 1.10 0.00 45.73 4.44
151 152 9.997482 AATACGCGATTAATGTATCAAAAAGTT 57.003 25.926 15.93 0.00 0.00 2.66
152 153 9.997482 ATACGCGATTAATGTATCAAAAAGTTT 57.003 25.926 15.93 0.00 0.00 2.66
153 154 8.157159 ACGCGATTAATGTATCAAAAAGTTTG 57.843 30.769 15.93 0.00 0.00 2.93
154 155 7.806014 ACGCGATTAATGTATCAAAAAGTTTGT 59.194 29.630 15.93 0.00 0.00 2.83
155 156 8.635124 CGCGATTAATGTATCAAAAAGTTTGTT 58.365 29.630 0.00 0.00 0.00 2.83
156 157 9.726034 GCGATTAATGTATCAAAAAGTTTGTTG 57.274 29.630 0.00 0.00 0.00 3.33
203 204 7.916128 TTTTTCAAAAGATGCATGCATTTTG 57.084 28.000 33.76 33.76 36.36 2.44
204 205 6.621316 TTTCAAAAGATGCATGCATTTTGT 57.379 29.167 35.52 28.79 36.40 2.83
205 206 6.621316 TTCAAAAGATGCATGCATTTTGTT 57.379 29.167 35.52 26.79 36.40 2.83
206 207 7.725818 TTCAAAAGATGCATGCATTTTGTTA 57.274 28.000 35.52 27.74 36.40 2.41
207 208 7.725818 TCAAAAGATGCATGCATTTTGTTAA 57.274 28.000 35.52 24.57 36.40 2.01
208 209 8.325421 TCAAAAGATGCATGCATTTTGTTAAT 57.675 26.923 35.52 21.57 36.40 1.40
209 210 9.433153 TCAAAAGATGCATGCATTTTGTTAATA 57.567 25.926 35.52 24.09 36.40 0.98
270 271 9.478019 CTACATGTTGAAGCTTTTAAATAGACG 57.522 33.333 2.30 0.00 0.00 4.18
271 272 7.871853 ACATGTTGAAGCTTTTAAATAGACGT 58.128 30.769 0.00 0.00 0.00 4.34
272 273 8.015658 ACATGTTGAAGCTTTTAAATAGACGTC 58.984 33.333 7.70 7.70 0.00 4.34
273 274 6.586751 TGTTGAAGCTTTTAAATAGACGTCG 58.413 36.000 10.46 0.00 0.00 5.12
274 275 6.421501 TGTTGAAGCTTTTAAATAGACGTCGA 59.578 34.615 10.46 5.12 0.00 4.20
275 276 7.042590 TGTTGAAGCTTTTAAATAGACGTCGAA 60.043 33.333 10.46 2.69 0.00 3.71
276 277 6.814343 TGAAGCTTTTAAATAGACGTCGAAC 58.186 36.000 10.46 0.00 0.00 3.95
277 278 6.643770 TGAAGCTTTTAAATAGACGTCGAACT 59.356 34.615 10.46 0.37 0.00 3.01
278 279 6.390987 AGCTTTTAAATAGACGTCGAACTG 57.609 37.500 10.46 0.00 0.00 3.16
279 280 5.924825 AGCTTTTAAATAGACGTCGAACTGT 59.075 36.000 10.46 0.00 0.00 3.55
280 281 6.423001 AGCTTTTAAATAGACGTCGAACTGTT 59.577 34.615 10.46 0.00 0.00 3.16
281 282 7.042254 AGCTTTTAAATAGACGTCGAACTGTTT 60.042 33.333 10.46 16.68 33.49 2.83
282 283 7.585210 GCTTTTAAATAGACGTCGAACTGTTTT 59.415 33.333 10.46 4.79 31.89 2.43
283 284 9.429600 CTTTTAAATAGACGTCGAACTGTTTTT 57.570 29.630 10.46 4.08 31.89 1.94
338 339 9.850628 ACATGATGAACATTCTTTTTAGTCATG 57.149 29.630 0.00 0.00 42.77 3.07
341 342 9.897744 TGATGAACATTCTTTTTAGTCATGAAC 57.102 29.630 0.00 0.00 0.00 3.18
342 343 9.897744 GATGAACATTCTTTTTAGTCATGAACA 57.102 29.630 0.00 0.00 0.00 3.18
343 344 9.683069 ATGAACATTCTTTTTAGTCATGAACAC 57.317 29.630 0.00 0.00 0.00 3.32
344 345 8.902806 TGAACATTCTTTTTAGTCATGAACACT 58.097 29.630 0.00 0.00 0.00 3.55
381 382 9.405587 ACATGAAGAATTTTTAAATACACGGTG 57.594 29.630 6.58 6.58 0.00 4.94
382 383 9.619316 CATGAAGAATTTTTAAATACACGGTGA 57.381 29.630 16.29 0.00 0.00 4.02
384 385 9.453325 TGAAGAATTTTTAAATACACGGTGAAC 57.547 29.630 16.29 0.00 0.00 3.18
385 386 9.453325 GAAGAATTTTTAAATACACGGTGAACA 57.547 29.630 16.29 0.00 0.00 3.18
386 387 9.804758 AAGAATTTTTAAATACACGGTGAACAA 57.195 25.926 16.29 0.00 0.00 2.83
387 388 9.240159 AGAATTTTTAAATACACGGTGAACAAC 57.760 29.630 16.29 0.00 0.00 3.32
388 389 9.240159 GAATTTTTAAATACACGGTGAACAACT 57.760 29.630 16.29 0.00 0.00 3.16
389 390 9.589111 AATTTTTAAATACACGGTGAACAACTT 57.411 25.926 16.29 2.13 0.00 2.66
390 391 8.983307 TTTTTAAATACACGGTGAACAACTTT 57.017 26.923 16.29 7.20 0.00 2.66
391 392 7.972623 TTTAAATACACGGTGAACAACTTTG 57.027 32.000 16.29 0.00 0.00 2.77
392 393 5.570234 AAATACACGGTGAACAACTTTGT 57.430 34.783 16.29 0.00 44.72 2.83
393 394 6.680874 AAATACACGGTGAACAACTTTGTA 57.319 33.333 16.29 0.00 41.31 2.41
394 395 6.680874 AATACACGGTGAACAACTTTGTAA 57.319 33.333 16.29 0.00 41.31 2.41
395 396 6.870971 ATACACGGTGAACAACTTTGTAAT 57.129 33.333 16.29 0.00 41.31 1.89
396 397 7.966246 ATACACGGTGAACAACTTTGTAATA 57.034 32.000 16.29 0.00 41.31 0.98
397 398 6.870971 ACACGGTGAACAACTTTGTAATAT 57.129 33.333 16.29 0.00 41.31 1.28
398 399 7.966246 ACACGGTGAACAACTTTGTAATATA 57.034 32.000 16.29 0.00 41.31 0.86
399 400 7.799784 ACACGGTGAACAACTTTGTAATATAC 58.200 34.615 16.29 0.00 41.31 1.47
400 401 7.658575 ACACGGTGAACAACTTTGTAATATACT 59.341 33.333 16.29 0.00 41.31 2.12
401 402 9.142515 CACGGTGAACAACTTTGTAATATACTA 57.857 33.333 0.74 0.00 41.31 1.82
402 403 9.880157 ACGGTGAACAACTTTGTAATATACTAT 57.120 29.630 0.00 0.00 41.31 2.12
444 445 9.840427 ACGATTTGAACATTTTTAGGACATTAG 57.160 29.630 0.00 0.00 0.00 1.73
445 446 9.840427 CGATTTGAACATTTTTAGGACATTAGT 57.160 29.630 0.00 0.00 0.00 2.24
462 463 9.237846 GGACATTAGTAAATTAGCTTTTCATGC 57.762 33.333 0.00 0.00 0.00 4.06
463 464 9.787532 GACATTAGTAAATTAGCTTTTCATGCA 57.212 29.630 0.00 0.00 0.00 3.96
468 469 8.517062 AGTAAATTAGCTTTTCATGCATCTCT 57.483 30.769 0.00 0.00 0.00 3.10
469 470 8.619546 AGTAAATTAGCTTTTCATGCATCTCTC 58.380 33.333 0.00 0.00 0.00 3.20
470 471 7.400599 AAATTAGCTTTTCATGCATCTCTCA 57.599 32.000 0.00 0.00 0.00 3.27
471 472 7.584122 AATTAGCTTTTCATGCATCTCTCAT 57.416 32.000 0.00 0.00 0.00 2.90
472 473 7.584122 ATTAGCTTTTCATGCATCTCTCATT 57.416 32.000 0.00 0.00 0.00 2.57
473 474 5.916661 AGCTTTTCATGCATCTCTCATTT 57.083 34.783 0.00 0.00 0.00 2.32
474 475 8.510243 TTAGCTTTTCATGCATCTCTCATTTA 57.490 30.769 0.00 0.00 0.00 1.40
475 476 7.400599 AGCTTTTCATGCATCTCTCATTTAA 57.599 32.000 0.00 0.00 0.00 1.52
476 477 7.833786 AGCTTTTCATGCATCTCTCATTTAAA 58.166 30.769 0.00 0.00 0.00 1.52
477 478 8.308931 AGCTTTTCATGCATCTCTCATTTAAAA 58.691 29.630 0.00 0.00 0.00 1.52
478 479 8.592998 GCTTTTCATGCATCTCTCATTTAAAAG 58.407 33.333 0.00 0.00 37.37 2.27
479 480 8.991243 TTTTCATGCATCTCTCATTTAAAAGG 57.009 30.769 0.00 0.00 0.00 3.11
480 481 7.943079 TTCATGCATCTCTCATTTAAAAGGA 57.057 32.000 0.00 0.00 0.00 3.36
481 482 7.943079 TCATGCATCTCTCATTTAAAAGGAA 57.057 32.000 0.00 0.00 0.00 3.36
482 483 8.352137 TCATGCATCTCTCATTTAAAAGGAAA 57.648 30.769 0.00 0.00 0.00 3.13
483 484 8.974238 TCATGCATCTCTCATTTAAAAGGAAAT 58.026 29.630 0.00 0.00 0.00 2.17
486 487 8.906867 TGCATCTCTCATTTAAAAGGAAATAGG 58.093 33.333 0.00 0.00 0.00 2.57
487 488 8.907885 GCATCTCTCATTTAAAAGGAAATAGGT 58.092 33.333 0.00 0.00 0.00 3.08
503 504 9.661954 AGGAAATAGGTTCTTGTATATCTCTCA 57.338 33.333 0.00 0.00 36.40 3.27
542 543 4.780815 TGAAGGCAGAGAAAAACTTGAGA 58.219 39.130 0.00 0.00 0.00 3.27
543 544 5.192927 TGAAGGCAGAGAAAAACTTGAGAA 58.807 37.500 0.00 0.00 0.00 2.87
544 545 5.297776 TGAAGGCAGAGAAAAACTTGAGAAG 59.702 40.000 0.00 0.00 0.00 2.85
607 609 1.810030 GGAACGAAGCTGGGCGTAG 60.810 63.158 9.51 0.00 40.23 3.51
648 650 3.720193 GCAGTCAGCCACAGTGCG 61.720 66.667 0.00 0.00 37.23 5.34
649 651 3.046087 CAGTCAGCCACAGTGCGG 61.046 66.667 0.00 0.00 36.02 5.69
658 660 3.560251 ACAGTGCGGCCAGTCCTT 61.560 61.111 2.24 0.00 0.00 3.36
670 672 1.007271 AGTCCTTGTGAGTGACGCG 60.007 57.895 3.53 3.53 34.24 6.01
673 675 3.414700 CTTGTGAGTGACGCGCCC 61.415 66.667 5.73 0.00 0.00 6.13
724 726 3.730761 GCTTCCACAGCCACAGCG 61.731 66.667 0.00 0.00 46.67 5.18
725 727 3.730761 CTTCCACAGCCACAGCGC 61.731 66.667 0.00 0.00 46.67 5.92
879 906 4.142138 CCTCCCGCTCGCTCTATAAATATT 60.142 45.833 0.00 0.00 0.00 1.28
880 907 4.744570 TCCCGCTCGCTCTATAAATATTG 58.255 43.478 0.00 0.00 0.00 1.90
881 908 3.307242 CCCGCTCGCTCTATAAATATTGC 59.693 47.826 0.00 0.00 0.00 3.56
884 911 4.489365 CGCTCGCTCTATAAATATTGCACG 60.489 45.833 0.00 0.00 0.00 5.34
906 939 0.673437 CTGCTCTGCTCCTAGCTACC 59.327 60.000 0.03 0.00 42.97 3.18
908 941 1.337118 GCTCTGCTCCTAGCTACCAT 58.663 55.000 0.03 0.00 42.97 3.55
930 966 3.006061 TGGTAGCACCATAGCACCT 57.994 52.632 4.16 0.00 44.79 4.00
945 981 0.676151 CACCTCCTCAGCTTGAAGGC 60.676 60.000 0.00 0.00 0.00 4.35
961 997 3.497932 GCCGCAAGCAGAGCAGAG 61.498 66.667 0.00 0.00 42.97 3.35
991 1027 4.039357 CGTCCGTCACTGACCGCT 62.039 66.667 3.50 0.00 0.00 5.52
1054 1110 1.709578 TCTATGCATCTCTTCCCGCT 58.290 50.000 0.19 0.00 0.00 5.52
1070 1126 2.030805 CCCGCTTTTTGGTTCTCTTCTG 60.031 50.000 0.00 0.00 0.00 3.02
1072 1128 3.315191 CCGCTTTTTGGTTCTCTTCTGAA 59.685 43.478 0.00 0.00 0.00 3.02
1166 1222 1.079503 GGAACTACTACGACGACGGT 58.920 55.000 12.58 3.39 44.46 4.83
1177 1233 2.749839 CGACGGTGGGTACGGGTA 60.750 66.667 0.00 0.00 35.23 3.69
1178 1234 2.885113 GACGGTGGGTACGGGTAC 59.115 66.667 0.30 0.30 35.23 3.34
1180 1236 3.825611 CGGTGGGTACGGGTACGG 61.826 72.222 3.13 0.00 46.48 4.02
1181 1237 4.147449 GGTGGGTACGGGTACGGC 62.147 72.222 3.13 0.00 46.48 5.68
1182 1238 4.496927 GTGGGTACGGGTACGGCG 62.497 72.222 4.80 4.80 46.48 6.46
1263 1325 1.285950 CTGTTCGTCTCACTGCCGA 59.714 57.895 0.00 0.00 0.00 5.54
1300 1362 5.824243 CTCAAAAAGGTGAGTACGTACTG 57.176 43.478 31.91 15.10 40.22 2.74
1301 1363 4.053295 TCAAAAAGGTGAGTACGTACTGC 58.947 43.478 31.91 22.15 36.50 4.40
1302 1364 3.738830 AAAAGGTGAGTACGTACTGCA 57.261 42.857 31.91 23.74 36.50 4.41
1303 1365 3.955650 AAAGGTGAGTACGTACTGCAT 57.044 42.857 31.91 18.54 36.50 3.96
1304 1366 2.941453 AGGTGAGTACGTACTGCATG 57.059 50.000 31.91 0.00 36.50 4.06
1305 1367 1.476891 AGGTGAGTACGTACTGCATGG 59.523 52.381 31.91 0.00 36.50 3.66
1306 1368 1.475280 GGTGAGTACGTACTGCATGGA 59.525 52.381 31.91 6.52 36.50 3.41
1307 1369 2.527100 GTGAGTACGTACTGCATGGAC 58.473 52.381 31.91 15.95 36.50 4.02
1308 1370 2.163815 GTGAGTACGTACTGCATGGACT 59.836 50.000 31.91 7.30 40.31 3.85
1309 1371 3.067721 GAGTACGTACTGCATGGACTC 57.932 52.381 31.91 12.93 44.98 3.36
1310 1372 1.400846 AGTACGTACTGCATGGACTCG 59.599 52.381 26.87 0.00 30.88 4.18
1311 1373 1.131883 GTACGTACTGCATGGACTCGT 59.868 52.381 18.47 10.27 0.00 4.18
1312 1374 0.170561 ACGTACTGCATGGACTCGTC 59.829 55.000 0.00 0.00 0.00 4.20
1313 1375 0.170339 CGTACTGCATGGACTCGTCA 59.830 55.000 0.00 0.00 0.00 4.35
1314 1376 1.202302 CGTACTGCATGGACTCGTCAT 60.202 52.381 0.00 0.00 0.00 3.06
1315 1377 2.464865 GTACTGCATGGACTCGTCATC 58.535 52.381 0.00 0.00 0.00 2.92
1316 1378 0.176680 ACTGCATGGACTCGTCATCC 59.823 55.000 0.00 0.00 36.70 3.51
1317 1379 0.463204 CTGCATGGACTCGTCATCCT 59.537 55.000 0.00 0.00 37.13 3.24
1318 1380 0.904649 TGCATGGACTCGTCATCCTT 59.095 50.000 0.00 0.00 37.13 3.36
1319 1381 1.278985 TGCATGGACTCGTCATCCTTT 59.721 47.619 0.00 0.00 37.13 3.11
1320 1382 2.290260 TGCATGGACTCGTCATCCTTTT 60.290 45.455 0.00 0.00 37.13 2.27
1321 1383 2.352960 GCATGGACTCGTCATCCTTTTC 59.647 50.000 0.00 0.00 37.13 2.29
1322 1384 2.363788 TGGACTCGTCATCCTTTTCG 57.636 50.000 0.00 0.00 37.13 3.46
1323 1385 1.890489 TGGACTCGTCATCCTTTTCGA 59.110 47.619 0.00 0.00 37.13 3.71
1324 1386 2.297880 TGGACTCGTCATCCTTTTCGAA 59.702 45.455 0.00 0.00 37.13 3.71
1325 1387 3.243941 TGGACTCGTCATCCTTTTCGAAA 60.244 43.478 6.47 6.47 37.13 3.46
1326 1388 3.744426 GGACTCGTCATCCTTTTCGAAAA 59.256 43.478 21.35 21.35 33.03 2.29
1327 1389 4.212636 GGACTCGTCATCCTTTTCGAAAAA 59.787 41.667 22.67 10.76 33.03 1.94
1346 1408 5.389859 AAAAACGCATGGATTCTTCATGA 57.610 34.783 8.08 0.00 43.25 3.07
1347 1409 4.627611 AAACGCATGGATTCTTCATGAG 57.372 40.909 8.08 7.16 43.25 2.90
1348 1410 1.945394 ACGCATGGATTCTTCATGAGC 59.055 47.619 8.08 0.00 43.12 4.26
1349 1411 1.944709 CGCATGGATTCTTCATGAGCA 59.055 47.619 8.08 0.00 43.25 4.26
1350 1412 2.356695 CGCATGGATTCTTCATGAGCAA 59.643 45.455 8.08 0.00 43.25 3.91
1351 1413 3.548214 CGCATGGATTCTTCATGAGCAAG 60.548 47.826 8.08 0.00 43.25 4.01
1352 1414 3.795826 GCATGGATTCTTCATGAGCAAGC 60.796 47.826 8.08 0.00 43.25 4.01
1353 1415 3.076079 TGGATTCTTCATGAGCAAGCA 57.924 42.857 0.00 0.00 0.00 3.91
1377 1462 3.941483 ACGGATTCTTGCCTTATGAGTTG 59.059 43.478 0.00 0.00 0.00 3.16
1411 1496 5.367945 TTGTAAACAACAGAGGAGTCCTT 57.632 39.130 14.41 0.26 39.87 3.36
1424 1509 2.941720 GGAGTCCTTCTGATTGCATCAC 59.058 50.000 0.41 0.00 35.06 3.06
1426 1511 3.341823 AGTCCTTCTGATTGCATCACAC 58.658 45.455 0.00 0.00 35.06 3.82
1427 1512 3.076621 GTCCTTCTGATTGCATCACACA 58.923 45.455 0.00 0.00 35.06 3.72
1428 1513 3.126514 GTCCTTCTGATTGCATCACACAG 59.873 47.826 0.00 0.00 35.06 3.66
1504 2040 4.664150 TTTTGGAAAAGTTCGGAGCATT 57.336 36.364 0.00 0.00 0.00 3.56
1512 2048 6.349363 GGAAAAGTTCGGAGCATTGTAGAAAT 60.349 38.462 0.00 0.00 0.00 2.17
1521 2057 6.024049 GGAGCATTGTAGAAATGAAGAAACG 58.976 40.000 2.33 0.00 0.00 3.60
1523 2059 5.048782 AGCATTGTAGAAATGAAGAAACGCA 60.049 36.000 2.33 0.00 0.00 5.24
1525 2061 6.143758 GCATTGTAGAAATGAAGAAACGCAAA 59.856 34.615 2.33 0.00 0.00 3.68
1556 2097 1.299976 CCGCCCTAGCAAAAGGACT 59.700 57.895 1.58 0.00 39.15 3.85
1564 2105 4.082733 CCCTAGCAAAAGGACTAGCAAAAC 60.083 45.833 1.58 0.00 39.15 2.43
1565 2106 4.518970 CCTAGCAAAAGGACTAGCAAAACA 59.481 41.667 0.00 0.00 39.15 2.83
1566 2107 4.307443 AGCAAAAGGACTAGCAAAACAC 57.693 40.909 0.00 0.00 0.00 3.32
1567 2108 3.699038 AGCAAAAGGACTAGCAAAACACA 59.301 39.130 0.00 0.00 0.00 3.72
1568 2109 4.342092 AGCAAAAGGACTAGCAAAACACAT 59.658 37.500 0.00 0.00 0.00 3.21
1600 2148 3.547868 CGAAATACAGTCATGACGTCCAG 59.452 47.826 19.85 11.07 36.20 3.86
1608 2156 2.866762 GTCATGACGTCCAGGAATAAGC 59.133 50.000 14.12 0.00 37.32 3.09
1629 2177 0.824595 TTTCACTCTCCCGGTGTCGA 60.825 55.000 0.00 0.00 39.00 4.20
1667 2217 1.732809 GTCCTAAAAAGACAGCGAGCC 59.267 52.381 0.00 0.00 34.27 4.70
1673 2223 3.460857 AAAAGACAGCGAGCCCTATAG 57.539 47.619 0.00 0.00 0.00 1.31
1674 2224 0.676736 AAGACAGCGAGCCCTATAGC 59.323 55.000 0.00 0.00 0.00 2.97
1925 2490 1.875963 CCGCAGGCTACAACAAAGG 59.124 57.895 0.00 0.00 46.14 3.11
1928 2493 1.604604 GCAGGCTACAACAAAGGTCA 58.395 50.000 0.00 0.00 0.00 4.02
2001 2569 2.954318 GGACATGCTCTGCCACAATAAT 59.046 45.455 0.00 0.00 0.00 1.28
2002 2570 4.136796 GGACATGCTCTGCCACAATAATA 58.863 43.478 0.00 0.00 0.00 0.98
2003 2571 4.580167 GGACATGCTCTGCCACAATAATAA 59.420 41.667 0.00 0.00 0.00 1.40
2026 2594 1.287815 CGCGTAAGTGTCTGACCCA 59.712 57.895 5.17 0.00 44.45 4.51
2053 2621 1.338769 CCCGACGAAACCTGAAGGATT 60.339 52.381 2.62 0.00 38.94 3.01
2090 2664 9.780186 ACTGCTTAATTATGGTCTTATCTTACC 57.220 33.333 1.00 0.00 36.24 2.85
2106 2680 4.517285 TCTTACCAACAGAGGAATCATGC 58.483 43.478 0.00 0.00 0.00 4.06
2108 2682 2.440409 ACCAACAGAGGAATCATGCAC 58.560 47.619 0.00 0.00 0.00 4.57
2129 2703 4.023450 CACTCCACTACTCGTTCACTGTTA 60.023 45.833 0.00 0.00 0.00 2.41
2148 2722 9.988815 CACTGTTAAGCTATGGTCTTATCTTAT 57.011 33.333 0.00 0.00 0.00 1.73
2152 2726 9.570488 GTTAAGCTATGGTCTTATCTTATACCG 57.430 37.037 0.00 0.00 34.60 4.02
2153 2727 7.778185 AAGCTATGGTCTTATCTTATACCGT 57.222 36.000 0.00 0.00 34.60 4.83
2154 2728 8.874744 AAGCTATGGTCTTATCTTATACCGTA 57.125 34.615 0.00 0.00 34.60 4.02
2179 2753 6.007936 TGACGATTGTTTATTTGGTTCCTG 57.992 37.500 0.00 0.00 0.00 3.86
2202 2779 3.782244 GCAGAAGCGGCTGACACG 61.782 66.667 1.81 0.00 38.14 4.49
2209 2786 1.372499 GCGGCTGACACGAGTGTTA 60.372 57.895 10.42 5.52 45.05 2.41
2210 2787 1.344942 GCGGCTGACACGAGTGTTAG 61.345 60.000 19.66 19.66 46.23 2.34
2211 2788 0.039437 CGGCTGACACGAGTGTTAGT 60.039 55.000 23.01 0.00 45.53 2.24
2212 2789 1.198408 CGGCTGACACGAGTGTTAGTA 59.802 52.381 23.01 6.68 45.53 1.82
2214 2791 2.228343 GGCTGACACGAGTGTTAGTAGT 59.772 50.000 23.01 0.00 45.53 2.73
2215 2792 3.235195 GCTGACACGAGTGTTAGTAGTG 58.765 50.000 23.01 5.37 45.53 2.74
2216 2793 3.235195 CTGACACGAGTGTTAGTAGTGC 58.765 50.000 16.83 1.36 45.05 4.40
2217 2794 2.882761 TGACACGAGTGTTAGTAGTGCT 59.117 45.455 10.42 0.00 45.05 4.40
2218 2795 3.235195 GACACGAGTGTTAGTAGTGCTG 58.765 50.000 10.42 0.00 45.05 4.41
2219 2796 2.621998 ACACGAGTGTTAGTAGTGCTGT 59.378 45.455 2.62 0.00 41.83 4.40
2220 2797 3.067742 ACACGAGTGTTAGTAGTGCTGTT 59.932 43.478 2.62 0.00 41.83 3.16
2221 2798 4.049186 CACGAGTGTTAGTAGTGCTGTTT 58.951 43.478 0.00 0.00 0.00 2.83
2222 2799 5.217393 CACGAGTGTTAGTAGTGCTGTTTA 58.783 41.667 0.00 0.00 0.00 2.01
2223 2800 5.688621 CACGAGTGTTAGTAGTGCTGTTTAA 59.311 40.000 0.00 0.00 0.00 1.52
2224 2801 6.365247 CACGAGTGTTAGTAGTGCTGTTTAAT 59.635 38.462 0.00 0.00 0.00 1.40
2225 2802 6.927381 ACGAGTGTTAGTAGTGCTGTTTAATT 59.073 34.615 0.00 0.00 0.00 1.40
2226 2803 8.084073 ACGAGTGTTAGTAGTGCTGTTTAATTA 58.916 33.333 0.00 0.00 0.00 1.40
2227 2804 8.584600 CGAGTGTTAGTAGTGCTGTTTAATTAG 58.415 37.037 0.00 0.00 0.00 1.73
2328 2906 2.618219 CGTCTCCGCCTAGGGATCG 61.618 68.421 11.72 5.55 41.52 3.69
2329 2907 1.528776 GTCTCCGCCTAGGGATCGT 60.529 63.158 11.72 0.00 41.52 3.73
2371 2953 1.455786 CGTGCGTGTTGTAAAGAGAGG 59.544 52.381 0.00 0.00 0.00 3.69
2376 2958 3.554337 GCGTGTTGTAAAGAGAGGGAGAA 60.554 47.826 0.00 0.00 0.00 2.87
2447 3047 7.051623 GTCAAACATCCTCTCTCTCTCTACTA 58.948 42.308 0.00 0.00 0.00 1.82
2453 3053 7.180408 ACATCCTCTCTCTCTCTACTATAGTCC 59.820 44.444 9.12 0.00 0.00 3.85
2481 3081 9.871238 AGTATTATGCGTTTTACTATAGGATGG 57.129 33.333 4.43 0.00 0.00 3.51
2482 3082 9.865321 GTATTATGCGTTTTACTATAGGATGGA 57.135 33.333 4.43 0.00 0.00 3.41
2495 3095 2.944275 AGGATGGATGGATGGATGGAT 58.056 47.619 0.00 0.00 0.00 3.41
2501 3102 0.694771 ATGGATGGATGGATGGACGG 59.305 55.000 0.00 0.00 0.00 4.79
2502 3103 1.302832 GGATGGATGGATGGACGGC 60.303 63.158 0.00 0.00 0.00 5.68
2503 3104 1.757306 GATGGATGGATGGACGGCT 59.243 57.895 0.00 0.00 0.00 5.52
2504 3105 0.109342 GATGGATGGATGGACGGCTT 59.891 55.000 0.00 0.00 0.00 4.35
2505 3106 0.179009 ATGGATGGATGGACGGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
2516 3117 1.945354 GACGGCTTGATGGACGGAGA 61.945 60.000 0.00 0.00 42.77 3.71
2517 3118 1.519455 CGGCTTGATGGACGGAGAC 60.519 63.158 0.00 0.00 33.56 3.36
2616 3217 0.246086 CTCGAGTGCTGCTTTCTCCT 59.754 55.000 3.62 0.00 0.00 3.69
2618 3219 1.074752 CGAGTGCTGCTTTCTCCTTC 58.925 55.000 0.00 0.00 0.00 3.46
2619 3220 1.447945 GAGTGCTGCTTTCTCCTTCC 58.552 55.000 0.00 0.00 0.00 3.46
2620 3221 0.767375 AGTGCTGCTTTCTCCTTCCA 59.233 50.000 0.00 0.00 0.00 3.53
2650 3251 1.767759 CATCTTTCCCGATGGGCTTT 58.232 50.000 0.00 0.00 43.94 3.51
2687 3291 4.593206 TCCATGTAGTTGGAGACTTGTTCT 59.407 41.667 0.00 0.00 40.90 3.01
2713 3344 2.417586 CTGTCGAGCATGCATGAAAAGA 59.582 45.455 30.64 18.49 0.00 2.52
2716 3347 4.229096 GTCGAGCATGCATGAAAAGAAAA 58.771 39.130 30.64 3.62 0.00 2.29
2717 3348 4.860907 GTCGAGCATGCATGAAAAGAAAAT 59.139 37.500 30.64 3.46 0.00 1.82
2720 3351 6.527722 TCGAGCATGCATGAAAAGAAAATAAC 59.472 34.615 30.64 7.40 0.00 1.89
2721 3352 6.308524 CGAGCATGCATGAAAAGAAAATAACA 59.691 34.615 30.64 0.00 0.00 2.41
2723 3354 8.025243 AGCATGCATGAAAAGAAAATAACAAG 57.975 30.769 30.64 0.00 0.00 3.16
2725 3356 7.624764 GCATGCATGAAAAGAAAATAACAAGGG 60.625 37.037 30.64 0.00 0.00 3.95
2755 3390 1.941812 CGGTGGTGTCTTGTTCTGC 59.058 57.895 0.00 0.00 0.00 4.26
2765 3400 1.138069 TCTTGTTCTGCACGACTCCAA 59.862 47.619 0.00 0.00 0.00 3.53
2769 3404 2.023414 TTCTGCACGACTCCAACCGT 62.023 55.000 0.00 0.00 39.88 4.83
2773 3408 0.172803 GCACGACTCCAACCGTATCT 59.827 55.000 0.00 0.00 37.23 1.98
2780 3415 4.425520 GACTCCAACCGTATCTCTTTCAG 58.574 47.826 0.00 0.00 0.00 3.02
2781 3416 3.833070 ACTCCAACCGTATCTCTTTCAGT 59.167 43.478 0.00 0.00 0.00 3.41
2783 3418 5.479375 ACTCCAACCGTATCTCTTTCAGTTA 59.521 40.000 0.00 0.00 0.00 2.24
2795 3430 7.383102 TCTCTTTCAGTTAAATCCATTGCTC 57.617 36.000 0.00 0.00 0.00 4.26
2796 3431 7.170965 TCTCTTTCAGTTAAATCCATTGCTCT 58.829 34.615 0.00 0.00 0.00 4.09
2797 3432 7.667219 TCTCTTTCAGTTAAATCCATTGCTCTT 59.333 33.333 0.00 0.00 0.00 2.85
2799 3434 8.299570 TCTTTCAGTTAAATCCATTGCTCTTTC 58.700 33.333 0.00 0.00 0.00 2.62
2800 3435 6.182039 TCAGTTAAATCCATTGCTCTTTCG 57.818 37.500 0.00 0.00 0.00 3.46
2801 3436 5.937540 TCAGTTAAATCCATTGCTCTTTCGA 59.062 36.000 0.00 0.00 0.00 3.71
2802 3437 6.599244 TCAGTTAAATCCATTGCTCTTTCGAT 59.401 34.615 0.00 0.00 0.00 3.59
2803 3438 6.690098 CAGTTAAATCCATTGCTCTTTCGATG 59.310 38.462 0.00 0.00 0.00 3.84
2804 3439 6.375455 AGTTAAATCCATTGCTCTTTCGATGT 59.625 34.615 0.00 0.00 0.00 3.06
2805 3440 4.889832 AATCCATTGCTCTTTCGATGTC 57.110 40.909 0.00 0.00 0.00 3.06
2806 3441 3.616956 TCCATTGCTCTTTCGATGTCT 57.383 42.857 0.00 0.00 0.00 3.41
2807 3442 3.525537 TCCATTGCTCTTTCGATGTCTC 58.474 45.455 0.00 0.00 0.00 3.36
2808 3443 3.196469 TCCATTGCTCTTTCGATGTCTCT 59.804 43.478 0.00 0.00 0.00 3.10
2809 3444 3.937706 CCATTGCTCTTTCGATGTCTCTT 59.062 43.478 0.00 0.00 0.00 2.85
2810 3445 4.201792 CCATTGCTCTTTCGATGTCTCTTG 60.202 45.833 0.00 0.00 0.00 3.02
2811 3446 3.667497 TGCTCTTTCGATGTCTCTTGT 57.333 42.857 0.00 0.00 0.00 3.16
2812 3447 3.579709 TGCTCTTTCGATGTCTCTTGTC 58.420 45.455 0.00 0.00 0.00 3.18
2813 3448 3.005791 TGCTCTTTCGATGTCTCTTGTCA 59.994 43.478 0.00 0.00 0.00 3.58
2816 3451 5.445673 GCTCTTTCGATGTCTCTTGTCATTG 60.446 44.000 0.00 0.00 0.00 2.82
2829 3464 4.216902 TCTTGTCATTGCTCTTTCCATGTG 59.783 41.667 0.00 0.00 0.00 3.21
2883 3535 2.781595 TTCTTTCCGGCCTCGCTGAC 62.782 60.000 0.00 0.00 37.02 3.51
2891 3543 1.875813 GCCTCGCTGACTGATCACG 60.876 63.158 0.00 0.00 33.42 4.35
2918 3575 2.709999 GCTTCATGCAAACGCGTGC 61.710 57.895 14.98 14.51 44.56 5.34
2984 3646 7.118535 TCGCAAAGTCAAAAGCATACACTAATA 59.881 33.333 0.00 0.00 0.00 0.98
3026 3688 7.979444 TGTGCTAGTTCTAGTTATGCTTTTT 57.021 32.000 8.38 0.00 0.00 1.94
3089 3751 3.568007 GCAACACAACAAGGTTGGAGATA 59.432 43.478 13.09 0.00 43.46 1.98
3104 3766 5.241403 TGGAGATAACAACCTTCACACAT 57.759 39.130 0.00 0.00 0.00 3.21
3207 4589 9.012161 ACTCTTAAGATAATACTATGACGACCC 57.988 37.037 5.44 0.00 0.00 4.46
3248 4630 5.891451 AGAAAACTTAAACTGCAACACTCC 58.109 37.500 0.00 0.00 0.00 3.85
3252 4634 3.877508 ACTTAAACTGCAACACTCCTGAC 59.122 43.478 0.00 0.00 0.00 3.51
3253 4635 1.680338 AAACTGCAACACTCCTGACC 58.320 50.000 0.00 0.00 0.00 4.02
3254 4636 0.546122 AACTGCAACACTCCTGACCA 59.454 50.000 0.00 0.00 0.00 4.02
3255 4637 0.107456 ACTGCAACACTCCTGACCAG 59.893 55.000 0.00 0.00 0.00 4.00
3256 4638 0.107456 CTGCAACACTCCTGACCAGT 59.893 55.000 0.00 0.00 0.00 4.00
3257 4639 0.179048 TGCAACACTCCTGACCAGTG 60.179 55.000 0.00 0.00 45.86 3.66
3258 4640 0.886490 GCAACACTCCTGACCAGTGG 60.886 60.000 7.91 7.91 44.86 4.00
3259 4641 0.886490 CAACACTCCTGACCAGTGGC 60.886 60.000 9.78 2.56 44.86 5.01
3260 4642 2.047844 CACTCCTGACCAGTGGCG 60.048 66.667 9.78 0.00 38.10 5.69
3261 4643 3.314331 ACTCCTGACCAGTGGCGG 61.314 66.667 9.78 7.77 0.00 6.13
3262 4644 2.997315 CTCCTGACCAGTGGCGGA 60.997 66.667 9.78 11.91 0.00 5.54
3263 4645 2.997315 TCCTGACCAGTGGCGGAG 60.997 66.667 9.78 2.19 0.00 4.63
3276 4658 4.932789 CGGAGCCAGGATTTTCGA 57.067 55.556 0.00 0.00 0.00 3.71
3277 4659 2.384203 CGGAGCCAGGATTTTCGAC 58.616 57.895 0.00 0.00 0.00 4.20
3278 4660 0.391130 CGGAGCCAGGATTTTCGACA 60.391 55.000 0.00 0.00 0.00 4.35
3279 4661 1.743772 CGGAGCCAGGATTTTCGACAT 60.744 52.381 0.00 0.00 0.00 3.06
3280 4662 1.672881 GGAGCCAGGATTTTCGACATG 59.327 52.381 0.00 0.00 0.00 3.21
3281 4663 1.672881 GAGCCAGGATTTTCGACATGG 59.327 52.381 0.00 0.45 40.33 3.66
3282 4664 0.740737 GCCAGGATTTTCGACATGGG 59.259 55.000 6.58 0.00 38.23 4.00
3283 4665 1.955208 GCCAGGATTTTCGACATGGGT 60.955 52.381 6.58 0.00 38.23 4.51
3284 4666 2.682563 GCCAGGATTTTCGACATGGGTA 60.683 50.000 6.58 0.00 38.23 3.69
3285 4667 3.820557 CCAGGATTTTCGACATGGGTAT 58.179 45.455 0.00 0.00 34.84 2.73
3286 4668 3.565482 CCAGGATTTTCGACATGGGTATG 59.435 47.826 0.00 0.00 40.24 2.39
3287 4669 3.003689 CAGGATTTTCGACATGGGTATGC 59.996 47.826 0.00 0.00 37.85 3.14
3288 4670 2.032030 GGATTTTCGACATGGGTATGCG 60.032 50.000 0.00 0.00 37.85 4.73
3289 4671 2.388310 TTTTCGACATGGGTATGCGA 57.612 45.000 0.00 0.00 39.37 5.10
3290 4672 2.388310 TTTCGACATGGGTATGCGAA 57.612 45.000 0.00 12.14 43.78 4.70
3291 4673 1.934589 TTCGACATGGGTATGCGAAG 58.065 50.000 0.00 0.00 42.31 3.79
3292 4674 0.821517 TCGACATGGGTATGCGAAGT 59.178 50.000 0.00 0.00 38.72 3.01
3293 4675 1.206132 TCGACATGGGTATGCGAAGTT 59.794 47.619 0.00 0.00 38.72 2.66
3294 4676 2.006888 CGACATGGGTATGCGAAGTTT 58.993 47.619 0.00 0.00 37.85 2.66
3295 4677 2.418628 CGACATGGGTATGCGAAGTTTT 59.581 45.455 0.00 0.00 37.85 2.43
3296 4678 3.119990 CGACATGGGTATGCGAAGTTTTT 60.120 43.478 0.00 0.00 37.85 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.862924 ATCAAATACTTGTTCACCGTCTG 57.137 39.130 0.00 0.00 33.94 3.51
1 2 6.931838 TCTATCAAATACTTGTTCACCGTCT 58.068 36.000 0.00 0.00 33.94 4.18
2 3 7.254455 CCATCTATCAAATACTTGTTCACCGTC 60.254 40.741 0.00 0.00 33.94 4.79
3 4 6.538742 CCATCTATCAAATACTTGTTCACCGT 59.461 38.462 0.00 0.00 33.94 4.83
4 5 6.538742 ACCATCTATCAAATACTTGTTCACCG 59.461 38.462 0.00 0.00 33.94 4.94
5 6 7.552687 TCACCATCTATCAAATACTTGTTCACC 59.447 37.037 0.00 0.00 33.94 4.02
6 7 8.492673 TCACCATCTATCAAATACTTGTTCAC 57.507 34.615 0.00 0.00 33.94 3.18
7 8 8.946085 GTTCACCATCTATCAAATACTTGTTCA 58.054 33.333 0.00 0.00 33.94 3.18
8 9 8.946085 TGTTCACCATCTATCAAATACTTGTTC 58.054 33.333 0.00 0.00 33.94 3.18
9 10 8.862325 TGTTCACCATCTATCAAATACTTGTT 57.138 30.769 0.00 0.00 33.94 2.83
23 24 9.685276 TGTCTATTGAAAATATGTTCACCATCT 57.315 29.630 7.88 0.00 37.24 2.90
67 68 9.647797 ACGTACTAAGAAAATGTTCATCACATA 57.352 29.630 0.00 0.00 46.23 2.29
69 70 7.956420 ACGTACTAAGAAAATGTTCATCACA 57.044 32.000 0.00 0.00 40.71 3.58
70 71 9.136952 ACTACGTACTAAGAAAATGTTCATCAC 57.863 33.333 0.00 0.00 36.09 3.06
71 72 9.135843 CACTACGTACTAAGAAAATGTTCATCA 57.864 33.333 0.00 0.00 36.09 3.07
72 73 9.350357 TCACTACGTACTAAGAAAATGTTCATC 57.650 33.333 0.00 0.00 36.09 2.92
73 74 9.701098 TTCACTACGTACTAAGAAAATGTTCAT 57.299 29.630 0.00 0.00 36.09 2.57
74 75 8.971321 GTTCACTACGTACTAAGAAAATGTTCA 58.029 33.333 0.00 0.00 36.09 3.18
75 76 8.971321 TGTTCACTACGTACTAAGAAAATGTTC 58.029 33.333 0.00 0.00 0.00 3.18
76 77 8.876275 TGTTCACTACGTACTAAGAAAATGTT 57.124 30.769 0.00 0.00 0.00 2.71
77 78 9.485206 AATGTTCACTACGTACTAAGAAAATGT 57.515 29.630 0.00 0.00 0.00 2.71
78 79 9.953825 GAATGTTCACTACGTACTAAGAAAATG 57.046 33.333 0.00 0.00 0.00 2.32
79 80 9.148104 GGAATGTTCACTACGTACTAAGAAAAT 57.852 33.333 0.00 0.00 0.00 1.82
80 81 7.326789 CGGAATGTTCACTACGTACTAAGAAAA 59.673 37.037 0.00 0.00 0.00 2.29
81 82 6.803320 CGGAATGTTCACTACGTACTAAGAAA 59.197 38.462 0.00 0.00 0.00 2.52
82 83 6.072508 ACGGAATGTTCACTACGTACTAAGAA 60.073 38.462 0.00 0.00 32.30 2.52
83 84 5.412594 ACGGAATGTTCACTACGTACTAAGA 59.587 40.000 0.00 0.00 32.30 2.10
84 85 5.634896 ACGGAATGTTCACTACGTACTAAG 58.365 41.667 0.00 0.00 32.30 2.18
85 86 5.627499 ACGGAATGTTCACTACGTACTAA 57.373 39.130 0.00 0.00 32.30 2.24
86 87 5.627499 AACGGAATGTTCACTACGTACTA 57.373 39.130 0.00 0.00 35.27 1.82
87 88 4.510038 AACGGAATGTTCACTACGTACT 57.490 40.909 0.00 0.00 35.27 2.73
125 126 9.997482 AACTTTTTGATACATTAATCGCGTATT 57.003 25.926 5.77 7.50 0.00 1.89
126 127 9.997482 AAACTTTTTGATACATTAATCGCGTAT 57.003 25.926 5.77 0.00 0.00 3.06
127 128 9.268255 CAAACTTTTTGATACATTAATCGCGTA 57.732 29.630 5.77 0.00 0.00 4.42
128 129 7.806014 ACAAACTTTTTGATACATTAATCGCGT 59.194 29.630 5.77 0.00 0.00 6.01
129 130 8.157159 ACAAACTTTTTGATACATTAATCGCG 57.843 30.769 0.00 0.00 0.00 5.87
130 131 9.726034 CAACAAACTTTTTGATACATTAATCGC 57.274 29.630 5.67 0.00 0.00 4.58
179 180 7.481642 ACAAAATGCATGCATCTTTTGAAAAA 58.518 26.923 39.88 14.93 37.76 1.94
180 181 7.028926 ACAAAATGCATGCATCTTTTGAAAA 57.971 28.000 39.88 15.11 37.76 2.29
181 182 6.621316 ACAAAATGCATGCATCTTTTGAAA 57.379 29.167 39.88 15.55 37.76 2.69
182 183 6.621316 AACAAAATGCATGCATCTTTTGAA 57.379 29.167 39.88 16.17 37.76 2.69
183 184 7.725818 TTAACAAAATGCATGCATCTTTTGA 57.274 28.000 39.88 27.28 37.76 2.69
244 245 9.478019 CGTCTATTTAAAAGCTTCAACATGTAG 57.522 33.333 0.00 0.00 0.00 2.74
245 246 8.995220 ACGTCTATTTAAAAGCTTCAACATGTA 58.005 29.630 0.00 0.00 0.00 2.29
246 247 7.871853 ACGTCTATTTAAAAGCTTCAACATGT 58.128 30.769 0.00 0.00 0.00 3.21
247 248 7.214449 CGACGTCTATTTAAAAGCTTCAACATG 59.786 37.037 14.70 0.00 0.00 3.21
248 249 7.117236 TCGACGTCTATTTAAAAGCTTCAACAT 59.883 33.333 14.70 0.00 0.00 2.71
249 250 6.421501 TCGACGTCTATTTAAAAGCTTCAACA 59.578 34.615 14.70 0.00 0.00 3.33
250 251 6.814343 TCGACGTCTATTTAAAAGCTTCAAC 58.186 36.000 14.70 0.00 0.00 3.18
251 252 7.170320 AGTTCGACGTCTATTTAAAAGCTTCAA 59.830 33.333 14.70 0.00 0.00 2.69
252 253 6.643770 AGTTCGACGTCTATTTAAAAGCTTCA 59.356 34.615 14.70 0.00 0.00 3.02
253 254 6.948777 CAGTTCGACGTCTATTTAAAAGCTTC 59.051 38.462 14.70 0.00 0.00 3.86
254 255 6.423001 ACAGTTCGACGTCTATTTAAAAGCTT 59.577 34.615 14.70 0.00 0.00 3.74
255 256 5.924825 ACAGTTCGACGTCTATTTAAAAGCT 59.075 36.000 14.70 0.00 0.00 3.74
256 257 6.149504 ACAGTTCGACGTCTATTTAAAAGC 57.850 37.500 14.70 0.00 0.00 3.51
257 258 8.982925 AAAACAGTTCGACGTCTATTTAAAAG 57.017 30.769 14.70 0.00 0.00 2.27
312 313 9.850628 CATGACTAAAAAGAATGTTCATCATGT 57.149 29.630 0.00 0.00 36.54 3.21
315 316 9.897744 GTTCATGACTAAAAAGAATGTTCATCA 57.102 29.630 0.00 0.00 0.00 3.07
316 317 9.897744 TGTTCATGACTAAAAAGAATGTTCATC 57.102 29.630 0.00 0.00 0.00 2.92
317 318 9.683069 GTGTTCATGACTAAAAAGAATGTTCAT 57.317 29.630 0.00 0.00 0.00 2.57
318 319 8.902806 AGTGTTCATGACTAAAAAGAATGTTCA 58.097 29.630 0.00 0.00 0.00 3.18
355 356 9.405587 CACCGTGTATTTAAAAATTCTTCATGT 57.594 29.630 0.00 0.00 0.00 3.21
356 357 9.619316 TCACCGTGTATTTAAAAATTCTTCATG 57.381 29.630 0.00 0.00 0.00 3.07
358 359 9.453325 GTTCACCGTGTATTTAAAAATTCTTCA 57.547 29.630 0.00 0.00 0.00 3.02
359 360 9.453325 TGTTCACCGTGTATTTAAAAATTCTTC 57.547 29.630 0.00 0.00 0.00 2.87
360 361 9.804758 TTGTTCACCGTGTATTTAAAAATTCTT 57.195 25.926 0.00 0.00 0.00 2.52
361 362 9.240159 GTTGTTCACCGTGTATTTAAAAATTCT 57.760 29.630 0.00 0.00 0.00 2.40
362 363 9.240159 AGTTGTTCACCGTGTATTTAAAAATTC 57.760 29.630 0.00 0.00 0.00 2.17
363 364 9.589111 AAGTTGTTCACCGTGTATTTAAAAATT 57.411 25.926 0.00 0.00 0.00 1.82
364 365 9.589111 AAAGTTGTTCACCGTGTATTTAAAAAT 57.411 25.926 0.00 0.00 0.00 1.82
365 366 8.861101 CAAAGTTGTTCACCGTGTATTTAAAAA 58.139 29.630 0.00 0.00 0.00 1.94
366 367 8.027771 ACAAAGTTGTTCACCGTGTATTTAAAA 58.972 29.630 0.00 0.00 38.47 1.52
367 368 7.536855 ACAAAGTTGTTCACCGTGTATTTAAA 58.463 30.769 0.00 0.00 38.47 1.52
368 369 7.086230 ACAAAGTTGTTCACCGTGTATTTAA 57.914 32.000 0.00 0.00 38.47 1.52
369 370 6.680874 ACAAAGTTGTTCACCGTGTATTTA 57.319 33.333 0.00 0.00 38.47 1.40
370 371 5.570234 ACAAAGTTGTTCACCGTGTATTT 57.430 34.783 0.00 0.00 38.47 1.40
371 372 6.680874 TTACAAAGTTGTTCACCGTGTATT 57.319 33.333 1.35 0.00 42.35 1.89
372 373 6.870971 ATTACAAAGTTGTTCACCGTGTAT 57.129 33.333 1.35 0.00 42.35 2.29
373 374 7.966246 ATATTACAAAGTTGTTCACCGTGTA 57.034 32.000 1.35 0.00 42.35 2.90
374 375 6.870971 ATATTACAAAGTTGTTCACCGTGT 57.129 33.333 1.35 0.00 42.35 4.49
375 376 8.025243 AGTATATTACAAAGTTGTTCACCGTG 57.975 34.615 1.35 0.00 42.35 4.94
376 377 9.880157 ATAGTATATTACAAAGTTGTTCACCGT 57.120 29.630 1.35 0.00 42.35 4.83
418 419 9.840427 CTAATGTCCTAAAAATGTTCAAATCGT 57.160 29.630 0.00 0.00 0.00 3.73
419 420 9.840427 ACTAATGTCCTAAAAATGTTCAAATCG 57.160 29.630 0.00 0.00 0.00 3.34
436 437 9.237846 GCATGAAAAGCTAATTTACTAATGTCC 57.762 33.333 0.00 0.00 0.00 4.02
437 438 9.787532 TGCATGAAAAGCTAATTTACTAATGTC 57.212 29.630 0.00 0.00 0.00 3.06
442 443 9.618890 AGAGATGCATGAAAAGCTAATTTACTA 57.381 29.630 2.46 0.00 0.00 1.82
443 444 8.517062 AGAGATGCATGAAAAGCTAATTTACT 57.483 30.769 2.46 0.00 0.00 2.24
444 445 8.400947 TGAGAGATGCATGAAAAGCTAATTTAC 58.599 33.333 2.46 0.00 0.00 2.01
445 446 8.510243 TGAGAGATGCATGAAAAGCTAATTTA 57.490 30.769 2.46 0.00 0.00 1.40
446 447 7.400599 TGAGAGATGCATGAAAAGCTAATTT 57.599 32.000 2.46 0.00 0.00 1.82
447 448 7.584122 ATGAGAGATGCATGAAAAGCTAATT 57.416 32.000 2.46 0.00 0.00 1.40
448 449 7.584122 AATGAGAGATGCATGAAAAGCTAAT 57.416 32.000 2.46 0.00 0.00 1.73
449 450 7.400599 AAATGAGAGATGCATGAAAAGCTAA 57.599 32.000 2.46 0.00 0.00 3.09
450 451 8.510243 TTAAATGAGAGATGCATGAAAAGCTA 57.490 30.769 2.46 0.00 0.00 3.32
451 452 5.916661 AAATGAGAGATGCATGAAAAGCT 57.083 34.783 2.46 0.00 0.00 3.74
452 453 8.470040 TTTTAAATGAGAGATGCATGAAAAGC 57.530 30.769 2.46 0.00 0.00 3.51
453 454 9.084164 CCTTTTAAATGAGAGATGCATGAAAAG 57.916 33.333 2.46 0.00 38.14 2.27
454 455 8.805175 TCCTTTTAAATGAGAGATGCATGAAAA 58.195 29.630 2.46 0.00 0.00 2.29
455 456 8.352137 TCCTTTTAAATGAGAGATGCATGAAA 57.648 30.769 2.46 0.00 0.00 2.69
456 457 7.943079 TCCTTTTAAATGAGAGATGCATGAA 57.057 32.000 2.46 0.00 0.00 2.57
457 458 7.943079 TTCCTTTTAAATGAGAGATGCATGA 57.057 32.000 2.46 0.00 0.00 3.07
460 461 8.906867 CCTATTTCCTTTTAAATGAGAGATGCA 58.093 33.333 2.77 0.00 31.63 3.96
461 462 8.907885 ACCTATTTCCTTTTAAATGAGAGATGC 58.092 33.333 2.77 0.00 31.63 3.91
477 478 9.661954 TGAGAGATATACAAGAACCTATTTCCT 57.338 33.333 0.00 0.00 34.32 3.36
515 516 7.330262 TCAAGTTTTTCTCTGCCTTCATTTTT 58.670 30.769 0.00 0.00 0.00 1.94
516 517 6.877236 TCAAGTTTTTCTCTGCCTTCATTTT 58.123 32.000 0.00 0.00 0.00 1.82
517 518 6.322201 TCTCAAGTTTTTCTCTGCCTTCATTT 59.678 34.615 0.00 0.00 0.00 2.32
518 519 5.829924 TCTCAAGTTTTTCTCTGCCTTCATT 59.170 36.000 0.00 0.00 0.00 2.57
519 520 5.380043 TCTCAAGTTTTTCTCTGCCTTCAT 58.620 37.500 0.00 0.00 0.00 2.57
520 521 4.780815 TCTCAAGTTTTTCTCTGCCTTCA 58.219 39.130 0.00 0.00 0.00 3.02
521 522 5.529060 TCTTCTCAAGTTTTTCTCTGCCTTC 59.471 40.000 0.00 0.00 0.00 3.46
522 523 5.440610 TCTTCTCAAGTTTTTCTCTGCCTT 58.559 37.500 0.00 0.00 0.00 4.35
523 524 5.041191 TCTTCTCAAGTTTTTCTCTGCCT 57.959 39.130 0.00 0.00 0.00 4.75
524 525 5.757850 TTCTTCTCAAGTTTTTCTCTGCC 57.242 39.130 0.00 0.00 0.00 4.85
525 526 8.538039 CATTTTTCTTCTCAAGTTTTTCTCTGC 58.462 33.333 0.00 0.00 0.00 4.26
526 527 9.793252 TCATTTTTCTTCTCAAGTTTTTCTCTG 57.207 29.630 0.00 0.00 0.00 3.35
534 535 6.469782 TGCCTTCATTTTTCTTCTCAAGTT 57.530 33.333 0.00 0.00 0.00 2.66
536 537 4.922103 GCTGCCTTCATTTTTCTTCTCAAG 59.078 41.667 0.00 0.00 0.00 3.02
542 543 4.320608 TTTCGCTGCCTTCATTTTTCTT 57.679 36.364 0.00 0.00 0.00 2.52
543 544 4.320608 TTTTCGCTGCCTTCATTTTTCT 57.679 36.364 0.00 0.00 0.00 2.52
580 582 0.878961 AGCTTCGTTCCGTTCGCTTT 60.879 50.000 0.00 0.00 0.00 3.51
591 593 2.264794 CCTACGCCCAGCTTCGTT 59.735 61.111 10.15 0.00 39.79 3.85
646 648 2.743928 CTCACAAGGACTGGCCGC 60.744 66.667 0.00 0.00 43.43 6.53
647 649 1.669115 CACTCACAAGGACTGGCCG 60.669 63.158 0.00 0.00 43.43 6.13
648 650 0.603975 GTCACTCACAAGGACTGGCC 60.604 60.000 0.00 0.00 0.00 5.36
649 651 0.946221 CGTCACTCACAAGGACTGGC 60.946 60.000 0.00 0.00 0.00 4.85
650 652 0.946221 GCGTCACTCACAAGGACTGG 60.946 60.000 0.00 0.00 0.00 4.00
651 653 1.278172 CGCGTCACTCACAAGGACTG 61.278 60.000 0.00 0.00 0.00 3.51
652 654 1.007271 CGCGTCACTCACAAGGACT 60.007 57.895 0.00 0.00 0.00 3.85
653 655 2.658707 GCGCGTCACTCACAAGGAC 61.659 63.158 8.43 0.00 0.00 3.85
654 656 2.355837 GCGCGTCACTCACAAGGA 60.356 61.111 8.43 0.00 0.00 3.36
681 683 2.858158 GTACGGGTCAAACAGCGC 59.142 61.111 0.00 0.00 0.00 5.92
682 684 0.387112 TACGTACGGGTCAAACAGCG 60.387 55.000 21.06 0.00 0.00 5.18
683 685 1.063031 GTACGTACGGGTCAAACAGC 58.937 55.000 21.06 0.00 0.00 4.40
741 743 4.676951 ACCGGCCAATGGTGGGTG 62.677 66.667 14.09 0.00 46.09 4.61
755 757 1.908793 AGTGGAGGTGGAGTGACCG 60.909 63.158 0.00 0.00 41.35 4.79
881 908 0.528017 TAGGAGCAGAGCAGAACGTG 59.472 55.000 0.00 0.00 0.00 4.49
884 911 0.823460 AGCTAGGAGCAGAGCAGAAC 59.177 55.000 0.64 0.00 45.56 3.01
922 958 1.871418 TCAAGCTGAGGAGGTGCTAT 58.129 50.000 0.00 0.00 35.85 2.97
930 966 2.665000 CGGCCTTCAAGCTGAGGA 59.335 61.111 13.63 0.00 42.00 3.71
945 981 3.497932 GCTCTGCTCTGCTTGCGG 61.498 66.667 0.00 0.00 38.10 5.69
991 1027 0.464036 ATTACCTTCATCGCAGCGGA 59.536 50.000 16.42 1.66 0.00 5.54
1054 1110 6.773976 ACATGTTCAGAAGAGAACCAAAAA 57.226 33.333 0.00 0.00 45.62 1.94
1087 1143 6.633500 GCACCTTCTGCATGGTATATAAAA 57.367 37.500 5.97 0.00 46.29 1.52
1166 1222 4.731729 TCGCCGTACCCGTACCCA 62.732 66.667 0.00 0.00 32.61 4.51
1263 1325 0.468226 TTGAGTGGCTTCGGTGAAGT 59.532 50.000 8.23 0.00 41.27 3.01
1294 1356 0.170339 TGACGAGTCCATGCAGTACG 59.830 55.000 0.00 0.00 0.00 3.67
1295 1357 2.464865 GATGACGAGTCCATGCAGTAC 58.535 52.381 0.00 0.00 0.00 2.73
1296 1358 1.409064 GGATGACGAGTCCATGCAGTA 59.591 52.381 0.00 0.00 35.76 2.74
1297 1359 0.176680 GGATGACGAGTCCATGCAGT 59.823 55.000 0.00 0.00 35.76 4.40
1298 1360 0.463204 AGGATGACGAGTCCATGCAG 59.537 55.000 0.00 0.00 38.25 4.41
1299 1361 0.904649 AAGGATGACGAGTCCATGCA 59.095 50.000 0.34 0.00 38.25 3.96
1300 1362 2.029838 AAAGGATGACGAGTCCATGC 57.970 50.000 0.34 0.00 38.25 4.06
1301 1363 2.604914 CGAAAAGGATGACGAGTCCATG 59.395 50.000 0.34 0.00 38.25 3.66
1302 1364 2.496070 TCGAAAAGGATGACGAGTCCAT 59.504 45.455 0.34 0.00 38.25 3.41
1303 1365 1.890489 TCGAAAAGGATGACGAGTCCA 59.110 47.619 0.34 0.00 38.25 4.02
1304 1366 2.649331 TCGAAAAGGATGACGAGTCC 57.351 50.000 0.34 0.00 35.94 3.85
1305 1367 4.985044 TTTTCGAAAAGGATGACGAGTC 57.015 40.909 19.08 0.00 36.22 3.36
1324 1386 5.389859 TCATGAAGAATCCATGCGTTTTT 57.610 34.783 0.00 0.00 40.74 1.94
1325 1387 4.676196 GCTCATGAAGAATCCATGCGTTTT 60.676 41.667 0.00 0.00 40.74 2.43
1326 1388 3.181493 GCTCATGAAGAATCCATGCGTTT 60.181 43.478 0.00 0.00 40.74 3.60
1327 1389 2.357009 GCTCATGAAGAATCCATGCGTT 59.643 45.455 0.00 0.00 40.74 4.84
1328 1390 1.945394 GCTCATGAAGAATCCATGCGT 59.055 47.619 0.00 0.00 40.74 5.24
1329 1391 1.944709 TGCTCATGAAGAATCCATGCG 59.055 47.619 0.00 0.00 40.74 4.73
1330 1392 3.795826 GCTTGCTCATGAAGAATCCATGC 60.796 47.826 0.00 0.00 40.74 4.06
1331 1393 3.380320 TGCTTGCTCATGAAGAATCCATG 59.620 43.478 0.00 0.00 41.93 3.66
1332 1394 3.380637 GTGCTTGCTCATGAAGAATCCAT 59.619 43.478 0.00 0.00 0.00 3.41
1333 1395 2.751259 GTGCTTGCTCATGAAGAATCCA 59.249 45.455 0.00 0.00 0.00 3.41
1334 1396 2.751259 TGTGCTTGCTCATGAAGAATCC 59.249 45.455 0.00 0.00 0.00 3.01
1335 1397 3.727079 CGTGTGCTTGCTCATGAAGAATC 60.727 47.826 10.29 0.00 0.00 2.52
1336 1398 2.161012 CGTGTGCTTGCTCATGAAGAAT 59.839 45.455 10.29 0.00 0.00 2.40
1337 1399 1.532437 CGTGTGCTTGCTCATGAAGAA 59.468 47.619 10.29 0.00 0.00 2.52
1338 1400 1.150827 CGTGTGCTTGCTCATGAAGA 58.849 50.000 10.29 0.00 0.00 2.87
1339 1401 0.167470 CCGTGTGCTTGCTCATGAAG 59.833 55.000 15.66 0.00 0.00 3.02
1340 1402 0.250252 TCCGTGTGCTTGCTCATGAA 60.250 50.000 15.66 0.00 0.00 2.57
1341 1403 0.036105 ATCCGTGTGCTTGCTCATGA 60.036 50.000 15.66 0.00 0.00 3.07
1342 1404 0.806868 AATCCGTGTGCTTGCTCATG 59.193 50.000 9.19 9.19 0.00 3.07
1343 1405 1.089920 GAATCCGTGTGCTTGCTCAT 58.910 50.000 0.73 0.00 0.00 2.90
1344 1406 0.035317 AGAATCCGTGTGCTTGCTCA 59.965 50.000 0.00 0.00 0.00 4.26
1345 1407 1.135859 CAAGAATCCGTGTGCTTGCTC 60.136 52.381 0.00 0.00 32.41 4.26
1346 1408 0.877071 CAAGAATCCGTGTGCTTGCT 59.123 50.000 0.00 0.00 32.41 3.91
1347 1409 3.389741 CAAGAATCCGTGTGCTTGC 57.610 52.632 0.00 0.00 32.41 4.01
1348 1410 0.109597 GGCAAGAATCCGTGTGCTTG 60.110 55.000 0.00 0.00 40.40 4.01
1349 1411 0.250901 AGGCAAGAATCCGTGTGCTT 60.251 50.000 0.00 0.00 37.17 3.91
1350 1412 0.250901 AAGGCAAGAATCCGTGTGCT 60.251 50.000 0.00 0.00 37.17 4.40
1351 1413 1.448985 TAAGGCAAGAATCCGTGTGC 58.551 50.000 0.00 0.00 36.24 4.57
1352 1414 3.270027 TCATAAGGCAAGAATCCGTGTG 58.730 45.455 0.00 0.00 0.00 3.82
1353 1415 3.055094 ACTCATAAGGCAAGAATCCGTGT 60.055 43.478 0.00 0.00 0.00 4.49
1377 1462 9.221775 CTCTGTTGTTTACAAAATCAGTAACAC 57.778 33.333 9.92 0.00 37.63 3.32
1481 2010 4.040445 TGCTCCGAACTTTTCCAAAAAG 57.960 40.909 9.93 9.93 0.00 2.27
1485 2014 2.955660 ACAATGCTCCGAACTTTTCCAA 59.044 40.909 0.00 0.00 0.00 3.53
1487 2016 4.000988 TCTACAATGCTCCGAACTTTTCC 58.999 43.478 0.00 0.00 0.00 3.13
1504 2040 5.201910 CGTTTGCGTTTCTTCATTTCTACA 58.798 37.500 0.00 0.00 0.00 2.74
1523 2059 4.622456 CGGCTGCCGCAAACGTTT 62.622 61.111 29.58 7.96 41.17 3.60
1540 2076 1.065418 TGCTAGTCCTTTTGCTAGGGC 60.065 52.381 0.00 0.00 40.33 5.19
1542 2078 4.518970 TGTTTTGCTAGTCCTTTTGCTAGG 59.481 41.667 0.00 0.00 36.21 3.02
1556 2097 5.047872 TCGTACTACTCCATGTGTTTTGCTA 60.048 40.000 0.00 0.00 0.00 3.49
1564 2105 6.561614 ACTGTATTTCGTACTACTCCATGTG 58.438 40.000 0.00 0.00 34.27 3.21
1565 2106 6.376299 TGACTGTATTTCGTACTACTCCATGT 59.624 38.462 0.00 0.00 34.27 3.21
1566 2107 6.792326 TGACTGTATTTCGTACTACTCCATG 58.208 40.000 0.00 0.00 34.27 3.66
1567 2108 7.284716 TCATGACTGTATTTCGTACTACTCCAT 59.715 37.037 0.00 0.00 34.27 3.41
1568 2109 6.600427 TCATGACTGTATTTCGTACTACTCCA 59.400 38.462 0.00 0.00 34.27 3.86
1600 2148 3.546724 GGGAGAGTGAAAGGCTTATTCC 58.453 50.000 0.00 1.93 0.00 3.01
1608 2156 0.037232 GACACCGGGAGAGTGAAAGG 60.037 60.000 6.32 0.00 38.63 3.11
1638 2186 5.567423 GCTGTCTTTTTAGGACAATGGCATT 60.567 40.000 6.96 6.96 42.15 3.56
1639 2187 4.082026 GCTGTCTTTTTAGGACAATGGCAT 60.082 41.667 0.00 0.00 42.15 4.40
1641 2189 3.670627 CGCTGTCTTTTTAGGACAATGGC 60.671 47.826 0.00 0.00 42.15 4.40
1642 2190 3.751175 TCGCTGTCTTTTTAGGACAATGG 59.249 43.478 0.00 0.00 42.15 3.16
1643 2191 4.670221 GCTCGCTGTCTTTTTAGGACAATG 60.670 45.833 0.00 0.00 42.15 2.82
1644 2192 3.437049 GCTCGCTGTCTTTTTAGGACAAT 59.563 43.478 0.00 0.00 42.15 2.71
1645 2193 2.806244 GCTCGCTGTCTTTTTAGGACAA 59.194 45.455 0.00 0.00 42.15 3.18
1647 2195 1.732809 GGCTCGCTGTCTTTTTAGGAC 59.267 52.381 0.00 0.00 0.00 3.85
1648 2196 1.338769 GGGCTCGCTGTCTTTTTAGGA 60.339 52.381 0.00 0.00 0.00 2.94
1649 2197 1.087501 GGGCTCGCTGTCTTTTTAGG 58.912 55.000 0.00 0.00 0.00 2.69
1650 2198 2.100605 AGGGCTCGCTGTCTTTTTAG 57.899 50.000 0.00 0.00 0.00 1.85
1651 2199 3.906720 ATAGGGCTCGCTGTCTTTTTA 57.093 42.857 0.00 0.00 0.00 1.52
1657 2207 1.535833 TAGCTATAGGGCTCGCTGTC 58.464 55.000 1.04 0.00 42.97 3.51
1905 2470 0.238289 CTTTGTTGTAGCCTGCGGTG 59.762 55.000 0.00 0.00 0.00 4.94
2001 2569 0.961019 AGACACTTACGCGTGGGTTA 59.039 50.000 24.59 0.00 39.19 2.85
2002 2570 0.599204 CAGACACTTACGCGTGGGTT 60.599 55.000 24.59 10.65 39.19 4.11
2003 2571 1.006571 CAGACACTTACGCGTGGGT 60.007 57.895 24.59 14.04 39.19 4.51
2026 2594 4.419921 GTTTCGTCGGGGCCCCAT 62.420 66.667 40.06 0.00 35.37 4.00
2036 2604 3.120649 CGACAAATCCTTCAGGTTTCGTC 60.121 47.826 0.00 0.00 36.34 4.20
2053 2621 7.173562 ACCATAATTAAGCAGTAAACACGACAA 59.826 33.333 0.00 0.00 0.00 3.18
2090 2664 2.681848 GGAGTGCATGATTCCTCTGTTG 59.318 50.000 0.00 0.00 0.00 3.33
2091 2665 2.306805 TGGAGTGCATGATTCCTCTGTT 59.693 45.455 0.00 0.00 31.49 3.16
2106 2680 2.293677 ACAGTGAACGAGTAGTGGAGTG 59.706 50.000 0.00 0.00 0.00 3.51
2108 2682 3.644884 AACAGTGAACGAGTAGTGGAG 57.355 47.619 0.00 0.00 0.00 3.86
2129 2703 7.778185 ACGGTATAAGATAAGACCATAGCTT 57.222 36.000 0.00 0.00 35.77 3.74
2148 2722 6.310956 CCAAATAAACAATCGTCAGTACGGTA 59.689 38.462 0.00 0.00 43.04 4.02
2149 2723 5.121142 CCAAATAAACAATCGTCAGTACGGT 59.879 40.000 0.00 0.00 46.72 4.83
2152 2726 7.019418 GGAACCAAATAAACAATCGTCAGTAC 58.981 38.462 0.00 0.00 0.00 2.73
2153 2727 6.938030 AGGAACCAAATAAACAATCGTCAGTA 59.062 34.615 0.00 0.00 0.00 2.74
2154 2728 5.768164 AGGAACCAAATAAACAATCGTCAGT 59.232 36.000 0.00 0.00 0.00 3.41
2192 2769 0.039437 ACTAACACTCGTGTCAGCCG 60.039 55.000 2.81 0.00 44.13 5.52
2202 2779 8.870879 CCTAATTAAACAGCACTACTAACACTC 58.129 37.037 0.00 0.00 0.00 3.51
2209 2786 5.487845 AGACCCCTAATTAAACAGCACTACT 59.512 40.000 0.00 0.00 0.00 2.57
2210 2787 5.742063 AGACCCCTAATTAAACAGCACTAC 58.258 41.667 0.00 0.00 0.00 2.73
2211 2788 6.382919 AAGACCCCTAATTAAACAGCACTA 57.617 37.500 0.00 0.00 0.00 2.74
2212 2789 4.929146 AGACCCCTAATTAAACAGCACT 57.071 40.909 0.00 0.00 0.00 4.40
2214 2791 7.208064 AGATAAGACCCCTAATTAAACAGCA 57.792 36.000 0.00 0.00 0.00 4.41
2215 2792 9.053840 GTAAGATAAGACCCCTAATTAAACAGC 57.946 37.037 0.00 0.00 0.00 4.40
2220 2797 8.636213 CGTCAGTAAGATAAGACCCCTAATTAA 58.364 37.037 0.00 0.00 0.00 1.40
2221 2798 7.232127 CCGTCAGTAAGATAAGACCCCTAATTA 59.768 40.741 0.00 0.00 0.00 1.40
2222 2799 6.041751 CCGTCAGTAAGATAAGACCCCTAATT 59.958 42.308 0.00 0.00 0.00 1.40
2223 2800 5.539193 CCGTCAGTAAGATAAGACCCCTAAT 59.461 44.000 0.00 0.00 0.00 1.73
2224 2801 4.891756 CCGTCAGTAAGATAAGACCCCTAA 59.108 45.833 0.00 0.00 0.00 2.69
2225 2802 4.467769 CCGTCAGTAAGATAAGACCCCTA 58.532 47.826 0.00 0.00 0.00 3.53
2226 2803 3.297736 CCGTCAGTAAGATAAGACCCCT 58.702 50.000 0.00 0.00 0.00 4.79
2227 2804 2.364647 CCCGTCAGTAAGATAAGACCCC 59.635 54.545 0.00 0.00 0.00 4.95
2328 2906 0.817654 GCCAAGGCCAGATGGTTTAC 59.182 55.000 19.70 3.74 39.00 2.01
2329 2907 0.679640 CGCCAAGGCCAGATGGTTTA 60.680 55.000 19.70 0.00 39.00 2.01
2371 2953 1.550976 TCCGCTCCTCTTTCTTTCTCC 59.449 52.381 0.00 0.00 0.00 3.71
2376 2958 1.271434 GGGTTTCCGCTCCTCTTTCTT 60.271 52.381 0.00 0.00 0.00 2.52
2471 3071 5.222086 TCCATCCATCCATCCATCCTATAG 58.778 45.833 0.00 0.00 0.00 1.31
2474 3074 3.583296 TCCATCCATCCATCCATCCTA 57.417 47.619 0.00 0.00 0.00 2.94
2475 3075 2.445806 TCCATCCATCCATCCATCCT 57.554 50.000 0.00 0.00 0.00 3.24
2476 3076 2.357881 CCATCCATCCATCCATCCATCC 60.358 54.545 0.00 0.00 0.00 3.51
2477 3077 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
2478 3078 2.310945 GTCCATCCATCCATCCATCCAT 59.689 50.000 0.00 0.00 0.00 3.41
2479 3079 1.706866 GTCCATCCATCCATCCATCCA 59.293 52.381 0.00 0.00 0.00 3.41
2480 3080 1.339438 CGTCCATCCATCCATCCATCC 60.339 57.143 0.00 0.00 0.00 3.51
2481 3081 1.339438 CCGTCCATCCATCCATCCATC 60.339 57.143 0.00 0.00 0.00 3.51
2482 3082 0.694771 CCGTCCATCCATCCATCCAT 59.305 55.000 0.00 0.00 0.00 3.41
2483 3083 2.055689 GCCGTCCATCCATCCATCCA 62.056 60.000 0.00 0.00 0.00 3.41
2495 3095 2.264480 CGTCCATCAAGCCGTCCA 59.736 61.111 0.00 0.00 0.00 4.02
2501 3102 1.519455 CCGTCTCCGTCCATCAAGC 60.519 63.158 0.00 0.00 0.00 4.01
2502 3103 0.101399 CTCCGTCTCCGTCCATCAAG 59.899 60.000 0.00 0.00 0.00 3.02
2503 3104 0.323087 TCTCCGTCTCCGTCCATCAA 60.323 55.000 0.00 0.00 0.00 2.57
2504 3105 1.030488 GTCTCCGTCTCCGTCCATCA 61.030 60.000 0.00 0.00 0.00 3.07
2505 3106 1.728672 GTCTCCGTCTCCGTCCATC 59.271 63.158 0.00 0.00 0.00 3.51
2516 3117 2.436292 CTCCGTCTCCGTCTCCGT 60.436 66.667 0.00 0.00 0.00 4.69
2517 3118 2.125229 TCTCCGTCTCCGTCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
2518 3119 2.462782 CGTCTCCGTCTCCGTCTCC 61.463 68.421 0.00 0.00 0.00 3.71
2519 3120 2.462782 CCGTCTCCGTCTCCGTCTC 61.463 68.421 0.00 0.00 0.00 3.36
2520 3121 2.436292 CCGTCTCCGTCTCCGTCT 60.436 66.667 0.00 0.00 0.00 4.18
2521 3122 4.176851 GCCGTCTCCGTCTCCGTC 62.177 72.222 0.00 0.00 0.00 4.79
2524 3125 4.176851 GTCGCCGTCTCCGTCTCC 62.177 72.222 0.00 0.00 0.00 3.71
2525 3126 4.517703 CGTCGCCGTCTCCGTCTC 62.518 72.222 0.00 0.00 0.00 3.36
2560 3161 2.262471 GAAATGACGCTGCCTGCCTG 62.262 60.000 0.00 0.00 38.78 4.85
2561 3162 2.034687 AAATGACGCTGCCTGCCT 59.965 55.556 0.00 0.00 38.78 4.75
2562 3163 2.486966 GAAATGACGCTGCCTGCC 59.513 61.111 0.00 0.00 38.78 4.85
2563 3164 2.486966 GGAAATGACGCTGCCTGC 59.513 61.111 0.00 0.00 38.57 4.85
2564 3165 2.409870 GGGGAAATGACGCTGCCTG 61.410 63.158 0.00 0.00 0.00 4.85
2565 3166 2.044946 GGGGAAATGACGCTGCCT 60.045 61.111 0.00 0.00 0.00 4.75
2566 3167 3.508840 CGGGGAAATGACGCTGCC 61.509 66.667 0.00 0.00 0.00 4.85
2567 3168 2.746277 ACGGGGAAATGACGCTGC 60.746 61.111 0.00 0.00 33.33 5.25
2568 3169 3.039202 GCACGGGGAAATGACGCTG 62.039 63.158 0.00 0.00 35.64 5.18
2569 3170 2.746277 GCACGGGGAAATGACGCT 60.746 61.111 0.00 0.00 0.00 5.07
2616 3217 2.593148 ATGCACGCAACGGTGGAA 60.593 55.556 0.90 0.00 41.67 3.53
2618 3219 2.128853 AAAGATGCACGCAACGGTGG 62.129 55.000 0.90 0.00 38.36 4.61
2619 3220 0.725784 GAAAGATGCACGCAACGGTG 60.726 55.000 0.00 0.00 40.89 4.94
2620 3221 1.574428 GAAAGATGCACGCAACGGT 59.426 52.632 0.00 0.00 0.00 4.83
2650 3251 1.824852 ACATGGACACATCGAGTAGCA 59.175 47.619 0.00 0.00 34.35 3.49
2713 3344 3.825908 TGGCTCCTCCCTTGTTATTTT 57.174 42.857 0.00 0.00 0.00 1.82
2716 3347 1.496429 CCATGGCTCCTCCCTTGTTAT 59.504 52.381 0.00 0.00 0.00 1.89
2717 3348 0.918983 CCATGGCTCCTCCCTTGTTA 59.081 55.000 0.00 0.00 0.00 2.41
2720 3351 2.123982 GCCATGGCTCCTCCCTTG 60.124 66.667 29.98 0.00 38.26 3.61
2721 3352 3.801997 CGCCATGGCTCCTCCCTT 61.802 66.667 33.07 0.00 39.32 3.95
2725 3356 4.864334 CCACCGCCATGGCTCCTC 62.864 72.222 33.07 5.66 43.94 3.71
2755 3390 1.743958 AGAGATACGGTTGGAGTCGTG 59.256 52.381 0.00 0.00 40.05 4.35
2765 3400 6.942976 TGGATTTAACTGAAAGAGATACGGT 58.057 36.000 0.00 0.00 37.43 4.83
2769 3404 9.113838 GAGCAATGGATTTAACTGAAAGAGATA 57.886 33.333 0.00 0.00 37.43 1.98
2773 3408 7.765695 AAGAGCAATGGATTTAACTGAAAGA 57.234 32.000 0.00 0.00 37.43 2.52
2795 3430 4.391216 AGCAATGACAAGAGACATCGAAAG 59.609 41.667 0.00 0.00 29.93 2.62
2796 3431 4.318332 AGCAATGACAAGAGACATCGAAA 58.682 39.130 0.00 0.00 29.93 3.46
2797 3432 3.928992 GAGCAATGACAAGAGACATCGAA 59.071 43.478 0.00 0.00 29.93 3.71
2799 3434 3.519579 AGAGCAATGACAAGAGACATCG 58.480 45.455 0.00 0.00 29.93 3.84
2800 3435 5.163774 GGAAAGAGCAATGACAAGAGACATC 60.164 44.000 0.00 0.00 29.93 3.06
2801 3436 4.699257 GGAAAGAGCAATGACAAGAGACAT 59.301 41.667 0.00 0.00 0.00 3.06
2802 3437 4.067896 GGAAAGAGCAATGACAAGAGACA 58.932 43.478 0.00 0.00 0.00 3.41
2803 3438 4.067896 TGGAAAGAGCAATGACAAGAGAC 58.932 43.478 0.00 0.00 0.00 3.36
2804 3439 4.356405 TGGAAAGAGCAATGACAAGAGA 57.644 40.909 0.00 0.00 0.00 3.10
2805 3440 4.458295 ACATGGAAAGAGCAATGACAAGAG 59.542 41.667 0.00 0.00 0.00 2.85
2806 3441 4.216902 CACATGGAAAGAGCAATGACAAGA 59.783 41.667 0.00 0.00 0.00 3.02
2807 3442 4.022589 ACACATGGAAAGAGCAATGACAAG 60.023 41.667 0.00 0.00 0.00 3.16
2808 3443 3.890756 ACACATGGAAAGAGCAATGACAA 59.109 39.130 0.00 0.00 0.00 3.18
2809 3444 3.489355 ACACATGGAAAGAGCAATGACA 58.511 40.909 0.00 0.00 0.00 3.58
2810 3445 4.510038 AACACATGGAAAGAGCAATGAC 57.490 40.909 0.00 0.00 0.00 3.06
2811 3446 4.156556 GCTAACACATGGAAAGAGCAATGA 59.843 41.667 0.00 0.00 0.00 2.57
2812 3447 4.157289 AGCTAACACATGGAAAGAGCAATG 59.843 41.667 0.00 0.00 0.00 2.82
2813 3448 4.338879 AGCTAACACATGGAAAGAGCAAT 58.661 39.130 0.00 0.00 0.00 3.56
2816 3451 4.201724 CGTAAGCTAACACATGGAAAGAGC 60.202 45.833 0.00 0.00 0.00 4.09
2829 3464 2.162408 ACACCCTACGTCGTAAGCTAAC 59.838 50.000 6.55 0.00 37.18 2.34
2900 3552 2.709999 GCACGCGTTTGCATGAAGC 61.710 57.895 10.22 2.05 42.49 3.86
2918 3575 2.125673 CGTCCGGCTACAACCCTG 60.126 66.667 0.00 0.00 0.00 4.45
2942 3599 2.338984 GAACGCTCGTGGACAGGT 59.661 61.111 0.00 0.00 0.00 4.00
2997 3659 7.331026 AGCATAACTAGAACTAGCACAATTCA 58.669 34.615 8.54 0.00 36.66 2.57
3007 3669 7.117236 CGTCCACAAAAAGCATAACTAGAACTA 59.883 37.037 0.00 0.00 0.00 2.24
3045 3707 1.094785 GCACACGTTTAGGGATGCAT 58.905 50.000 0.00 0.00 32.86 3.96
3049 3711 1.094785 GCATGCACACGTTTAGGGAT 58.905 50.000 14.21 0.00 0.00 3.85
3089 3751 3.186119 CGCAAAATGTGTGAAGGTTGTT 58.814 40.909 0.00 0.00 40.42 2.83
3101 3763 3.791973 TGGTCTTGAAACGCAAAATGT 57.208 38.095 0.00 0.00 35.74 2.71
3104 3766 7.708752 AGAAATATTTGGTCTTGAAACGCAAAA 59.291 29.630 5.17 0.00 35.74 2.44
3197 4579 3.445687 ACGCTGCGGGTCGTCATA 61.446 61.111 26.95 0.00 33.09 2.15
3258 4640 1.449601 TCGAAAATCCTGGCTCCGC 60.450 57.895 0.00 0.00 0.00 5.54
3259 4641 0.391130 TGTCGAAAATCCTGGCTCCG 60.391 55.000 0.00 0.00 0.00 4.63
3260 4642 1.672881 CATGTCGAAAATCCTGGCTCC 59.327 52.381 0.00 0.00 0.00 4.70
3261 4643 1.672881 CCATGTCGAAAATCCTGGCTC 59.327 52.381 0.00 0.00 0.00 4.70
3262 4644 1.683011 CCCATGTCGAAAATCCTGGCT 60.683 52.381 0.00 0.00 0.00 4.75
3263 4645 0.740737 CCCATGTCGAAAATCCTGGC 59.259 55.000 0.00 0.00 0.00 4.85
3264 4646 2.128771 ACCCATGTCGAAAATCCTGG 57.871 50.000 0.00 0.00 0.00 4.45
3265 4647 3.003689 GCATACCCATGTCGAAAATCCTG 59.996 47.826 0.00 0.00 34.40 3.86
3266 4648 3.214328 GCATACCCATGTCGAAAATCCT 58.786 45.455 0.00 0.00 34.40 3.24
3267 4649 2.032030 CGCATACCCATGTCGAAAATCC 60.032 50.000 0.00 0.00 35.23 3.01
3268 4650 2.869801 TCGCATACCCATGTCGAAAATC 59.130 45.455 0.00 0.00 37.58 2.17
3269 4651 2.912771 TCGCATACCCATGTCGAAAAT 58.087 42.857 0.00 0.00 37.58 1.82
3270 4652 2.388310 TCGCATACCCATGTCGAAAA 57.612 45.000 0.00 0.00 37.58 2.29
3271 4653 2.276201 CTTCGCATACCCATGTCGAAA 58.724 47.619 13.60 0.00 43.42 3.46
3272 4654 1.206132 ACTTCGCATACCCATGTCGAA 59.794 47.619 12.66 12.66 42.67 3.71
3273 4655 0.821517 ACTTCGCATACCCATGTCGA 59.178 50.000 0.00 0.00 38.23 4.20
3274 4656 1.651987 AACTTCGCATACCCATGTCG 58.348 50.000 0.00 0.00 34.40 4.35
3275 4657 4.434713 AAAAACTTCGCATACCCATGTC 57.565 40.909 0.00 0.00 34.40 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.