Multiple sequence alignment - TraesCS4B01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G327200 chr4B 100.000 3111 0 0 1 3111 618157376 618160486 0.000000e+00 5746
1 TraesCS4B01G327200 chr4B 91.525 413 35 0 1716 2128 618075206 618075618 1.250000e-158 569
2 TraesCS4B01G327200 chr4B 91.867 332 25 1 1215 1544 618074756 618075087 2.190000e-126 462
3 TraesCS4B01G327200 chr4B 91.339 127 11 0 1011 1137 617765323 617765449 1.150000e-39 174
4 TraesCS4B01G327200 chr4B 88.000 125 13 1 1235 1357 617765551 617765675 2.500000e-31 147
5 TraesCS4B01G327200 chr5A 89.919 2470 116 45 635 3013 666038615 666041042 0.000000e+00 3059
6 TraesCS4B01G327200 chr5A 87.347 490 47 7 1635 2111 665983223 665983710 5.870000e-152 547
7 TraesCS4B01G327200 chr5A 89.855 414 40 2 1716 2128 665892411 665892823 5.910000e-147 531
8 TraesCS4B01G327200 chr5A 90.793 391 36 0 1716 2106 665978102 665978492 9.880000e-145 523
9 TraesCS4B01G327200 chr5A 83.993 556 59 23 1012 1561 665891817 665892348 9.960000e-140 507
10 TraesCS4B01G327200 chr5A 83.585 530 61 20 1021 1545 665982688 665983196 1.010000e-129 473
11 TraesCS4B01G327200 chr5A 90.390 333 30 1 1215 1545 665970018 665970350 1.320000e-118 436
12 TraesCS4B01G327200 chr5A 91.473 129 11 0 1009 1137 665816206 665816334 8.870000e-41 178
13 TraesCS4B01G327200 chr4D 89.650 2116 111 43 612 2664 484887205 484889275 0.000000e+00 2595
14 TraesCS4B01G327200 chr4D 88.139 489 44 7 1635 2111 484840777 484841263 1.250000e-158 569
15 TraesCS4B01G327200 chr4D 84.831 534 52 22 1011 1543 484840243 484840748 7.700000e-141 510
16 TraesCS4B01G327200 chr4D 88.136 413 46 2 1716 2128 484809276 484809685 3.610000e-134 488
17 TraesCS4B01G327200 chr4D 90.476 357 31 2 1215 1569 484808866 484809221 4.700000e-128 468
18 TraesCS4B01G327200 chr4D 84.290 331 21 12 2790 3106 484889546 484889859 8.440000e-76 294
19 TraesCS4B01G327200 chr4D 88.265 196 21 2 1350 1544 484770825 484771019 1.870000e-57 233
20 TraesCS4B01G327200 chr4D 90.370 135 7 4 1009 1137 484770318 484770452 4.120000e-39 172
21 TraesCS4B01G327200 chr4D 79.424 243 32 12 2414 2648 484805755 484805987 4.150000e-34 156
22 TraesCS4B01G327200 chr1B 80.711 394 59 13 1726 2112 393542164 393542547 1.090000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G327200 chr4B 618157376 618160486 3110 False 5746.000000 5746 100.0000 1 3111 1 chr4B.!!$F1 3110
1 TraesCS4B01G327200 chr4B 618074756 618075618 862 False 515.500000 569 91.6960 1215 2128 2 chr4B.!!$F3 913
2 TraesCS4B01G327200 chr5A 666038615 666041042 2427 False 3059.000000 3059 89.9190 635 3013 1 chr5A.!!$F4 2378
3 TraesCS4B01G327200 chr5A 665891817 665892823 1006 False 519.000000 531 86.9240 1012 2128 2 chr5A.!!$F5 1116
4 TraesCS4B01G327200 chr5A 665982688 665983710 1022 False 510.000000 547 85.4660 1021 2111 2 chr5A.!!$F6 1090
5 TraesCS4B01G327200 chr4D 484887205 484889859 2654 False 1444.500000 2595 86.9700 612 3106 2 chr4D.!!$F4 2494
6 TraesCS4B01G327200 chr4D 484840243 484841263 1020 False 539.500000 569 86.4850 1011 2111 2 chr4D.!!$F3 1100
7 TraesCS4B01G327200 chr4D 484805755 484809685 3930 False 370.666667 488 86.0120 1215 2648 3 chr4D.!!$F2 1433
8 TraesCS4B01G327200 chr4D 484770318 484771019 701 False 202.500000 233 89.3175 1009 1544 2 chr4D.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.033920 CCACCAAGCCTTTCCTTTGC 59.966 55.0 0.0 0.0 0.0 3.68 F
251 252 0.039165 CCAAGCCTTTCCTTTGCGTC 60.039 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 3778 0.661187 CCTGCACATGCGTTGACAAC 60.661 55.000 8.34 8.34 45.83 3.32 R
2335 4426 7.114754 TGGTTGCTACTGTACATACTAGTAGT 58.885 38.462 16.29 8.14 43.54 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.864334 CTCGCCATGACAGGGGGC 62.864 72.222 17.63 11.29 44.27 5.80
20 21 4.864334 CGCCATGACAGGGGGCTC 62.864 72.222 10.46 0.00 45.53 4.70
21 22 4.864334 GCCATGACAGGGGGCTCG 62.864 72.222 8.47 0.00 44.32 5.03
22 23 3.083349 CCATGACAGGGGGCTCGA 61.083 66.667 0.00 0.00 0.00 4.04
23 24 2.187946 CATGACAGGGGGCTCGAC 59.812 66.667 0.00 0.00 0.00 4.20
24 25 3.461773 ATGACAGGGGGCTCGACG 61.462 66.667 0.00 0.00 0.00 5.12
25 26 3.957435 ATGACAGGGGGCTCGACGA 62.957 63.158 0.00 0.00 0.00 4.20
26 27 3.148279 GACAGGGGGCTCGACGAT 61.148 66.667 0.00 0.00 0.00 3.73
27 28 3.432051 GACAGGGGGCTCGACGATG 62.432 68.421 0.00 0.00 0.00 3.84
28 29 4.227134 CAGGGGGCTCGACGATGG 62.227 72.222 0.00 0.00 0.00 3.51
29 30 4.779733 AGGGGGCTCGACGATGGT 62.780 66.667 0.00 0.00 0.00 3.55
31 32 2.728817 GGGGCTCGACGATGGTAG 59.271 66.667 0.00 0.00 0.00 3.18
32 33 1.826921 GGGGCTCGACGATGGTAGA 60.827 63.158 0.00 0.00 0.00 2.59
33 34 1.179814 GGGGCTCGACGATGGTAGAT 61.180 60.000 0.00 0.00 0.00 1.98
35 36 0.039074 GGCTCGACGATGGTAGATGG 60.039 60.000 0.00 0.00 0.00 3.51
36 37 0.039074 GCTCGACGATGGTAGATGGG 60.039 60.000 0.00 0.00 0.00 4.00
38 39 1.537638 CTCGACGATGGTAGATGGGAG 59.462 57.143 0.00 0.00 0.00 4.30
39 40 1.133884 TCGACGATGGTAGATGGGAGT 60.134 52.381 0.00 0.00 0.00 3.85
40 41 1.001268 CGACGATGGTAGATGGGAGTG 60.001 57.143 0.00 0.00 0.00 3.51
41 42 1.341531 GACGATGGTAGATGGGAGTGG 59.658 57.143 0.00 0.00 0.00 4.00
42 43 1.343075 ACGATGGTAGATGGGAGTGGT 60.343 52.381 0.00 0.00 0.00 4.16
43 44 1.069204 CGATGGTAGATGGGAGTGGTG 59.931 57.143 0.00 0.00 0.00 4.17
46 47 2.626785 TGGTAGATGGGAGTGGTGAAA 58.373 47.619 0.00 0.00 0.00 2.69
47 48 2.304761 TGGTAGATGGGAGTGGTGAAAC 59.695 50.000 0.00 0.00 0.00 2.78
48 49 2.572104 GGTAGATGGGAGTGGTGAAACT 59.428 50.000 0.00 0.00 36.74 2.66
49 50 3.009143 GGTAGATGGGAGTGGTGAAACTT 59.991 47.826 0.00 0.00 36.74 2.66
53 54 1.318576 GGGAGTGGTGAAACTTGTGG 58.681 55.000 0.00 0.00 36.74 4.17
54 55 0.668535 GGAGTGGTGAAACTTGTGGC 59.331 55.000 0.00 0.00 36.74 5.01
55 56 1.680338 GAGTGGTGAAACTTGTGGCT 58.320 50.000 0.00 0.00 36.74 4.75
57 58 1.212935 AGTGGTGAAACTTGTGGCTCT 59.787 47.619 0.00 0.00 36.74 4.09
59 60 1.239347 GGTGAAACTTGTGGCTCTCC 58.761 55.000 0.00 0.00 36.74 3.71
60 61 1.239347 GTGAAACTTGTGGCTCTCCC 58.761 55.000 0.00 0.00 0.00 4.30
61 62 0.110486 TGAAACTTGTGGCTCTCCCC 59.890 55.000 0.00 0.00 0.00 4.81
62 63 0.402121 GAAACTTGTGGCTCTCCCCT 59.598 55.000 0.00 0.00 0.00 4.79
63 64 0.402121 AAACTTGTGGCTCTCCCCTC 59.598 55.000 0.00 0.00 0.00 4.30
64 65 1.492993 AACTTGTGGCTCTCCCCTCC 61.493 60.000 0.00 0.00 0.00 4.30
66 67 4.741239 TGTGGCTCTCCCCTCCCC 62.741 72.222 0.00 0.00 0.00 4.81
68 69 4.095400 TGGCTCTCCCCTCCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
69 70 3.773154 GGCTCTCCCCTCCCCTCT 61.773 72.222 0.00 0.00 0.00 3.69
70 71 2.123033 GCTCTCCCCTCCCCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
71 72 2.710826 GCTCTCCCCTCCCCTCTCT 61.711 68.421 0.00 0.00 0.00 3.10
73 74 0.998945 CTCTCCCCTCCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
74 75 1.232792 CTCCCCTCCCCTCTCTCTG 59.767 68.421 0.00 0.00 0.00 3.35
75 76 2.285180 CCCCTCCCCTCTCTCTGG 59.715 72.222 0.00 0.00 0.00 3.86
76 77 2.641746 CCCCTCCCCTCTCTCTGGT 61.642 68.421 0.00 0.00 0.00 4.00
77 78 1.394151 CCCTCCCCTCTCTCTGGTT 59.606 63.158 0.00 0.00 0.00 3.67
78 79 0.689412 CCCTCCCCTCTCTCTGGTTC 60.689 65.000 0.00 0.00 0.00 3.62
81 82 2.545810 CTCCCCTCTCTCTGGTTCTTT 58.454 52.381 0.00 0.00 0.00 2.52
82 83 3.566775 CCTCCCCTCTCTCTGGTTCTTTA 60.567 52.174 0.00 0.00 0.00 1.85
83 84 4.294347 CTCCCCTCTCTCTGGTTCTTTAT 58.706 47.826 0.00 0.00 0.00 1.40
84 85 5.459505 CTCCCCTCTCTCTGGTTCTTTATA 58.540 45.833 0.00 0.00 0.00 0.98
85 86 5.209659 TCCCCTCTCTCTGGTTCTTTATAC 58.790 45.833 0.00 0.00 0.00 1.47
87 88 5.163395 CCCCTCTCTCTGGTTCTTTATACAC 60.163 48.000 0.00 0.00 0.00 2.90
88 89 5.163395 CCCTCTCTCTGGTTCTTTATACACC 60.163 48.000 0.00 0.00 0.00 4.16
89 90 5.163395 CCTCTCTCTGGTTCTTTATACACCC 60.163 48.000 0.00 0.00 0.00 4.61
90 91 5.338632 TCTCTCTGGTTCTTTATACACCCA 58.661 41.667 0.00 0.00 0.00 4.51
92 93 4.469945 TCTCTGGTTCTTTATACACCCAGG 59.530 45.833 0.00 0.00 39.89 4.45
93 94 4.431378 TCTGGTTCTTTATACACCCAGGA 58.569 43.478 0.00 0.00 39.89 3.86
95 96 5.130477 TCTGGTTCTTTATACACCCAGGATC 59.870 44.000 0.00 0.00 39.89 3.36
96 97 4.165372 TGGTTCTTTATACACCCAGGATCC 59.835 45.833 2.48 2.48 0.00 3.36
97 98 4.165372 GGTTCTTTATACACCCAGGATCCA 59.835 45.833 15.82 0.00 0.00 3.41
98 99 5.339695 GGTTCTTTATACACCCAGGATCCAA 60.340 44.000 15.82 0.00 0.00 3.53
99 100 5.367945 TCTTTATACACCCAGGATCCAAC 57.632 43.478 15.82 0.00 0.00 3.77
100 101 5.036916 TCTTTATACACCCAGGATCCAACT 58.963 41.667 15.82 0.00 0.00 3.16
101 102 5.491078 TCTTTATACACCCAGGATCCAACTT 59.509 40.000 15.82 0.00 0.00 2.66
105 106 1.065126 CACCCAGGATCCAACTTCTCC 60.065 57.143 15.82 0.00 0.00 3.71
106 107 1.203492 ACCCAGGATCCAACTTCTCCT 60.203 52.381 15.82 0.00 40.05 3.69
107 108 1.488393 CCCAGGATCCAACTTCTCCTC 59.512 57.143 15.82 0.00 37.30 3.71
108 109 1.488393 CCAGGATCCAACTTCTCCTCC 59.512 57.143 15.82 0.00 37.30 4.30
109 110 1.137872 CAGGATCCAACTTCTCCTCCG 59.862 57.143 15.82 0.00 37.30 4.63
110 111 0.466124 GGATCCAACTTCTCCTCCGG 59.534 60.000 6.95 0.00 0.00 5.14
111 112 0.179070 GATCCAACTTCTCCTCCGGC 60.179 60.000 0.00 0.00 0.00 6.13
112 113 0.909610 ATCCAACTTCTCCTCCGGCA 60.910 55.000 0.00 0.00 0.00 5.69
114 115 0.250727 CCAACTTCTCCTCCGGCAAA 60.251 55.000 0.00 0.00 0.00 3.68
116 117 0.250770 AACTTCTCCTCCGGCAAACC 60.251 55.000 0.00 0.00 0.00 3.27
119 120 0.035439 TTCTCCTCCGGCAAACCATC 60.035 55.000 0.00 0.00 34.57 3.51
120 121 1.452108 CTCCTCCGGCAAACCATCC 60.452 63.158 0.00 0.00 34.57 3.51
121 122 2.196997 CTCCTCCGGCAAACCATCCA 62.197 60.000 0.00 0.00 34.57 3.41
124 125 1.303236 TCCGGCAAACCATCCACAG 60.303 57.895 0.00 0.00 34.57 3.66
125 126 2.342650 CCGGCAAACCATCCACAGG 61.343 63.158 0.00 0.00 34.57 4.00
129 130 0.609662 GCAAACCATCCACAGGCATT 59.390 50.000 0.00 0.00 0.00 3.56
131 132 1.894466 CAAACCATCCACAGGCATTGA 59.106 47.619 0.00 0.00 31.50 2.57
132 133 2.498481 CAAACCATCCACAGGCATTGAT 59.502 45.455 0.00 0.00 31.50 2.57
133 134 3.668141 AACCATCCACAGGCATTGATA 57.332 42.857 0.00 0.00 0.00 2.15
135 136 2.511218 ACCATCCACAGGCATTGATACT 59.489 45.455 0.00 0.00 0.00 2.12
136 137 3.144506 CCATCCACAGGCATTGATACTC 58.855 50.000 0.00 0.00 0.00 2.59
137 138 3.181447 CCATCCACAGGCATTGATACTCT 60.181 47.826 0.00 0.00 0.00 3.24
138 139 3.827008 TCCACAGGCATTGATACTCTC 57.173 47.619 0.00 0.00 0.00 3.20
139 140 3.378512 TCCACAGGCATTGATACTCTCT 58.621 45.455 0.00 0.00 0.00 3.10
140 141 3.133542 TCCACAGGCATTGATACTCTCTG 59.866 47.826 0.00 0.00 0.00 3.35
141 142 3.133542 CCACAGGCATTGATACTCTCTGA 59.866 47.826 0.00 0.00 0.00 3.27
142 143 4.202336 CCACAGGCATTGATACTCTCTGAT 60.202 45.833 0.00 0.00 0.00 2.90
143 144 5.366460 CACAGGCATTGATACTCTCTGATT 58.634 41.667 0.00 0.00 0.00 2.57
145 146 6.018098 CACAGGCATTGATACTCTCTGATTTC 60.018 42.308 0.00 0.00 0.00 2.17
146 147 6.126825 ACAGGCATTGATACTCTCTGATTTCT 60.127 38.462 0.00 0.00 0.00 2.52
147 148 6.766944 CAGGCATTGATACTCTCTGATTTCTT 59.233 38.462 0.00 0.00 0.00 2.52
149 150 6.017275 GGCATTGATACTCTCTGATTTCTTGG 60.017 42.308 0.00 0.00 0.00 3.61
150 151 6.513066 GCATTGATACTCTCTGATTTCTTGGC 60.513 42.308 0.00 0.00 0.00 4.52
151 152 5.946942 TGATACTCTCTGATTTCTTGGCT 57.053 39.130 0.00 0.00 0.00 4.75
152 153 5.911752 TGATACTCTCTGATTTCTTGGCTC 58.088 41.667 0.00 0.00 0.00 4.70
155 156 3.837146 ACTCTCTGATTTCTTGGCTCTGA 59.163 43.478 0.00 0.00 0.00 3.27
156 157 4.470664 ACTCTCTGATTTCTTGGCTCTGAT 59.529 41.667 0.00 0.00 0.00 2.90
158 159 5.183969 TCTCTGATTTCTTGGCTCTGATTG 58.816 41.667 0.00 0.00 0.00 2.67
159 160 3.693085 TCTGATTTCTTGGCTCTGATTGC 59.307 43.478 0.00 0.00 0.00 3.56
160 161 3.423749 TGATTTCTTGGCTCTGATTGCA 58.576 40.909 0.00 0.00 0.00 4.08
161 162 3.192001 TGATTTCTTGGCTCTGATTGCAC 59.808 43.478 0.00 0.00 0.00 4.57
162 163 2.275134 TTCTTGGCTCTGATTGCACA 57.725 45.000 0.00 0.00 0.00 4.57
163 164 2.502142 TCTTGGCTCTGATTGCACAT 57.498 45.000 0.00 0.00 0.00 3.21
164 165 3.632643 TCTTGGCTCTGATTGCACATA 57.367 42.857 0.00 0.00 0.00 2.29
165 166 3.273434 TCTTGGCTCTGATTGCACATAC 58.727 45.455 0.00 0.00 0.00 2.39
166 167 2.785540 TGGCTCTGATTGCACATACA 57.214 45.000 0.00 0.00 0.00 2.29
167 168 2.635714 TGGCTCTGATTGCACATACAG 58.364 47.619 0.00 0.00 0.00 2.74
168 169 2.236893 TGGCTCTGATTGCACATACAGA 59.763 45.455 9.73 9.73 37.71 3.41
169 170 3.118149 TGGCTCTGATTGCACATACAGAT 60.118 43.478 10.30 0.00 38.43 2.90
170 171 3.497640 GGCTCTGATTGCACATACAGATC 59.502 47.826 10.30 7.46 38.43 2.75
171 172 4.378774 GCTCTGATTGCACATACAGATCT 58.621 43.478 10.30 0.00 38.43 2.75
172 173 4.448395 GCTCTGATTGCACATACAGATCTC 59.552 45.833 10.30 2.88 38.43 2.75
173 174 4.953667 TCTGATTGCACATACAGATCTCC 58.046 43.478 0.00 0.00 35.01 3.71
176 177 5.121105 TGATTGCACATACAGATCTCCAAG 58.879 41.667 0.00 0.00 0.00 3.61
177 178 4.824479 TTGCACATACAGATCTCCAAGA 57.176 40.909 0.00 0.00 0.00 3.02
178 179 4.128925 TGCACATACAGATCTCCAAGAC 57.871 45.455 0.00 0.00 0.00 3.01
179 180 3.771479 TGCACATACAGATCTCCAAGACT 59.229 43.478 0.00 0.00 0.00 3.24
181 182 4.569966 GCACATACAGATCTCCAAGACTTG 59.430 45.833 8.31 8.31 0.00 3.16
191 192 2.098293 CAAGACTTGGGCGCATACC 58.902 57.895 10.83 0.93 0.00 2.73
192 193 0.676466 CAAGACTTGGGCGCATACCA 60.676 55.000 10.83 4.36 35.88 3.25
193 194 0.676782 AAGACTTGGGCGCATACCAC 60.677 55.000 10.83 0.00 37.82 4.16
194 195 2.045340 ACTTGGGCGCATACCACC 60.045 61.111 10.83 0.00 37.82 4.61
195 196 2.828549 CTTGGGCGCATACCACCC 60.829 66.667 10.83 0.00 44.52 4.61
196 197 4.434354 TTGGGCGCATACCACCCC 62.434 66.667 10.83 0.00 43.54 4.95
199 200 4.123545 GGCGCATACCACCCCCTT 62.124 66.667 10.83 0.00 0.00 3.95
200 201 2.044352 GCGCATACCACCCCCTTT 60.044 61.111 0.30 0.00 0.00 3.11
201 202 2.414785 GCGCATACCACCCCCTTTG 61.415 63.158 0.30 0.00 0.00 2.77
202 203 1.001393 CGCATACCACCCCCTTTGT 60.001 57.895 0.00 0.00 0.00 2.83
203 204 1.029947 CGCATACCACCCCCTTTGTC 61.030 60.000 0.00 0.00 0.00 3.18
205 206 1.955208 GCATACCACCCCCTTTGTCTG 60.955 57.143 0.00 0.00 0.00 3.51
207 208 0.402272 TACCACCCCCTTTGTCTGGT 60.402 55.000 0.00 0.00 38.75 4.00
208 209 1.228552 CCACCCCCTTTGTCTGGTG 60.229 63.158 0.00 0.00 46.22 4.17
209 210 1.228552 CACCCCCTTTGTCTGGTGG 60.229 63.158 0.00 0.00 43.60 4.61
210 211 2.440599 CCCCCTTTGTCTGGTGGG 59.559 66.667 0.00 0.00 39.37 4.61
213 214 1.302511 CCCTTTGTCTGGTGGGTCG 60.303 63.158 0.00 0.00 35.13 4.79
214 215 1.302511 CCTTTGTCTGGTGGGTCGG 60.303 63.158 0.00 0.00 0.00 4.79
215 216 1.966451 CTTTGTCTGGTGGGTCGGC 60.966 63.158 0.00 0.00 0.00 5.54
216 217 2.674563 CTTTGTCTGGTGGGTCGGCA 62.675 60.000 0.00 0.00 0.00 5.69
217 218 2.063015 TTTGTCTGGTGGGTCGGCAT 62.063 55.000 0.00 0.00 0.00 4.40
218 219 2.436646 GTCTGGTGGGTCGGCATG 60.437 66.667 0.00 0.00 0.00 4.06
220 221 2.034066 CTGGTGGGTCGGCATGTT 59.966 61.111 0.00 0.00 0.00 2.71
221 222 1.603455 CTGGTGGGTCGGCATGTTT 60.603 57.895 0.00 0.00 0.00 2.83
222 223 1.865788 CTGGTGGGTCGGCATGTTTG 61.866 60.000 0.00 0.00 0.00 2.93
223 224 1.602323 GGTGGGTCGGCATGTTTGA 60.602 57.895 0.00 0.00 0.00 2.69
224 225 1.586154 GGTGGGTCGGCATGTTTGAG 61.586 60.000 0.00 0.00 0.00 3.02
226 227 0.327924 TGGGTCGGCATGTTTGAGAT 59.672 50.000 0.00 0.00 0.00 2.75
228 229 1.407437 GGGTCGGCATGTTTGAGATCT 60.407 52.381 0.00 0.00 0.00 2.75
229 230 1.936547 GGTCGGCATGTTTGAGATCTC 59.063 52.381 16.21 16.21 0.00 2.75
230 231 1.936547 GTCGGCATGTTTGAGATCTCC 59.063 52.381 20.03 5.43 0.00 3.71
231 232 1.554617 TCGGCATGTTTGAGATCTCCA 59.445 47.619 20.03 11.11 0.00 3.86
232 233 1.667724 CGGCATGTTTGAGATCTCCAC 59.332 52.381 20.03 16.09 0.00 4.02
233 234 2.019984 GGCATGTTTGAGATCTCCACC 58.980 52.381 20.03 2.11 0.00 4.61
236 237 3.128242 GCATGTTTGAGATCTCCACCAAG 59.872 47.826 20.03 6.26 0.00 3.61
237 238 2.783135 TGTTTGAGATCTCCACCAAGC 58.217 47.619 20.03 10.44 0.00 4.01
239 240 1.661463 TTGAGATCTCCACCAAGCCT 58.339 50.000 20.03 0.00 0.00 4.58
240 241 1.661463 TGAGATCTCCACCAAGCCTT 58.339 50.000 20.03 0.00 0.00 4.35
241 242 1.988107 TGAGATCTCCACCAAGCCTTT 59.012 47.619 20.03 0.00 0.00 3.11
242 243 2.026822 TGAGATCTCCACCAAGCCTTTC 60.027 50.000 20.03 0.00 0.00 2.62
246 247 1.499007 TCTCCACCAAGCCTTTCCTTT 59.501 47.619 0.00 0.00 0.00 3.11
247 248 1.615392 CTCCACCAAGCCTTTCCTTTG 59.385 52.381 0.00 0.00 0.00 2.77
248 249 0.033920 CCACCAAGCCTTTCCTTTGC 59.966 55.000 0.00 0.00 0.00 3.68
249 250 0.318955 CACCAAGCCTTTCCTTTGCG 60.319 55.000 0.00 0.00 0.00 4.85
251 252 0.039165 CCAAGCCTTTCCTTTGCGTC 60.039 55.000 0.00 0.00 0.00 5.19
252 253 0.954452 CAAGCCTTTCCTTTGCGTCT 59.046 50.000 0.00 0.00 0.00 4.18
254 255 2.100605 AGCCTTTCCTTTGCGTCTAG 57.899 50.000 0.00 0.00 0.00 2.43
255 256 1.623811 AGCCTTTCCTTTGCGTCTAGA 59.376 47.619 0.00 0.00 0.00 2.43
256 257 2.237392 AGCCTTTCCTTTGCGTCTAGAT 59.763 45.455 0.00 0.00 0.00 1.98
259 260 4.116238 CCTTTCCTTTGCGTCTAGATCTC 58.884 47.826 0.00 0.00 0.00 2.75
261 262 5.407407 TTTCCTTTGCGTCTAGATCTCTT 57.593 39.130 0.00 0.00 0.00 2.85
262 263 5.407407 TTCCTTTGCGTCTAGATCTCTTT 57.593 39.130 0.00 0.00 0.00 2.52
263 264 5.000012 TCCTTTGCGTCTAGATCTCTTTC 58.000 43.478 0.00 0.00 0.00 2.62
264 265 4.462834 TCCTTTGCGTCTAGATCTCTTTCA 59.537 41.667 0.00 0.00 0.00 2.69
265 266 4.564769 CCTTTGCGTCTAGATCTCTTTCAC 59.435 45.833 0.00 0.00 0.00 3.18
266 267 4.783764 TTGCGTCTAGATCTCTTTCACA 57.216 40.909 0.00 0.00 0.00 3.58
267 268 4.783764 TGCGTCTAGATCTCTTTCACAA 57.216 40.909 0.00 0.00 0.00 3.33
269 270 5.538118 TGCGTCTAGATCTCTTTCACAAAA 58.462 37.500 0.00 0.00 0.00 2.44
270 271 6.166279 TGCGTCTAGATCTCTTTCACAAAAT 58.834 36.000 0.00 0.00 0.00 1.82
271 272 6.311445 TGCGTCTAGATCTCTTTCACAAAATC 59.689 38.462 0.00 0.00 0.00 2.17
272 273 6.533367 GCGTCTAGATCTCTTTCACAAAATCT 59.467 38.462 0.00 0.00 0.00 2.40
273 274 7.702772 GCGTCTAGATCTCTTTCACAAAATCTA 59.297 37.037 0.00 0.00 0.00 1.98
274 275 9.743057 CGTCTAGATCTCTTTCACAAAATCTAT 57.257 33.333 0.00 0.00 0.00 1.98
278 279 8.744568 AGATCTCTTTCACAAAATCTATTCCC 57.255 34.615 0.00 0.00 0.00 3.97
279 280 7.777440 AGATCTCTTTCACAAAATCTATTCCCC 59.223 37.037 0.00 0.00 0.00 4.81
280 281 6.187682 TCTCTTTCACAAAATCTATTCCCCC 58.812 40.000 0.00 0.00 0.00 5.40
282 283 6.318913 TCTTTCACAAAATCTATTCCCCCAA 58.681 36.000 0.00 0.00 0.00 4.12
283 284 6.959366 TCTTTCACAAAATCTATTCCCCCAAT 59.041 34.615 0.00 0.00 0.00 3.16
285 286 6.091076 TCACAAAATCTATTCCCCCAATCT 57.909 37.500 0.00 0.00 0.00 2.40
287 288 5.302823 CACAAAATCTATTCCCCCAATCTCC 59.697 44.000 0.00 0.00 0.00 3.71
288 289 4.749048 AAATCTATTCCCCCAATCTCCC 57.251 45.455 0.00 0.00 0.00 4.30
289 290 2.133858 TCTATTCCCCCAATCTCCCC 57.866 55.000 0.00 0.00 0.00 4.81
291 292 1.988846 CTATTCCCCCAATCTCCCCTC 59.011 57.143 0.00 0.00 0.00 4.30
293 294 0.047802 TTCCCCCAATCTCCCCTCAT 59.952 55.000 0.00 0.00 0.00 2.90
294 295 0.047802 TCCCCCAATCTCCCCTCATT 59.952 55.000 0.00 0.00 0.00 2.57
298 299 2.178544 CCCCAATCTCCCCTCATTTGAT 59.821 50.000 0.00 0.00 0.00 2.57
299 300 3.374540 CCCCAATCTCCCCTCATTTGATT 60.375 47.826 0.00 0.00 0.00 2.57
301 302 5.457686 CCCAATCTCCCCTCATTTGATTTA 58.542 41.667 0.00 0.00 0.00 1.40
302 303 5.302823 CCCAATCTCCCCTCATTTGATTTAC 59.697 44.000 0.00 0.00 0.00 2.01
303 304 5.302823 CCAATCTCCCCTCATTTGATTTACC 59.697 44.000 0.00 0.00 0.00 2.85
304 305 6.131961 CAATCTCCCCTCATTTGATTTACCT 58.868 40.000 0.00 0.00 0.00 3.08
305 306 5.796502 TCTCCCCTCATTTGATTTACCTT 57.203 39.130 0.00 0.00 0.00 3.50
306 307 5.509498 TCTCCCCTCATTTGATTTACCTTG 58.491 41.667 0.00 0.00 0.00 3.61
307 308 4.023291 TCCCCTCATTTGATTTACCTTGC 58.977 43.478 0.00 0.00 0.00 4.01
308 309 3.132824 CCCCTCATTTGATTTACCTTGCC 59.867 47.826 0.00 0.00 0.00 4.52
309 310 3.132824 CCCTCATTTGATTTACCTTGCCC 59.867 47.826 0.00 0.00 0.00 5.36
310 311 3.132824 CCTCATTTGATTTACCTTGCCCC 59.867 47.826 0.00 0.00 0.00 5.80
311 312 4.026052 CTCATTTGATTTACCTTGCCCCT 58.974 43.478 0.00 0.00 0.00 4.79
313 314 3.534357 TTTGATTTACCTTGCCCCTGA 57.466 42.857 0.00 0.00 0.00 3.86
314 315 3.756082 TTGATTTACCTTGCCCCTGAT 57.244 42.857 0.00 0.00 0.00 2.90
315 316 3.297134 TGATTTACCTTGCCCCTGATC 57.703 47.619 0.00 0.00 0.00 2.92
319 320 0.343372 TACCTTGCCCCTGATCCTCT 59.657 55.000 0.00 0.00 0.00 3.69
320 321 0.985490 ACCTTGCCCCTGATCCTCTC 60.985 60.000 0.00 0.00 0.00 3.20
321 322 0.984961 CCTTGCCCCTGATCCTCTCA 60.985 60.000 0.00 0.00 0.00 3.27
322 323 0.914644 CTTGCCCCTGATCCTCTCAA 59.085 55.000 0.00 0.00 32.14 3.02
323 324 0.914644 TTGCCCCTGATCCTCTCAAG 59.085 55.000 0.00 0.00 32.14 3.02
324 325 0.252881 TGCCCCTGATCCTCTCAAGT 60.253 55.000 0.00 0.00 32.14 3.16
326 327 1.969240 GCCCCTGATCCTCTCAAGTCT 60.969 57.143 0.00 0.00 32.14 3.24
327 328 2.038659 CCCCTGATCCTCTCAAGTCTC 58.961 57.143 0.00 0.00 32.14 3.36
329 330 2.694628 CCCTGATCCTCTCAAGTCTCTG 59.305 54.545 0.00 0.00 32.14 3.35
331 332 4.217510 CCTGATCCTCTCAAGTCTCTGAT 58.782 47.826 0.00 0.00 32.14 2.90
332 333 4.279169 CCTGATCCTCTCAAGTCTCTGATC 59.721 50.000 0.00 0.00 32.14 2.92
333 334 5.128033 TGATCCTCTCAAGTCTCTGATCT 57.872 43.478 0.00 0.00 0.00 2.75
334 335 5.517924 TGATCCTCTCAAGTCTCTGATCTT 58.482 41.667 0.00 0.00 0.00 2.40
335 336 5.360429 TGATCCTCTCAAGTCTCTGATCTTG 59.640 44.000 13.09 13.09 41.36 3.02
336 337 3.446873 TCCTCTCAAGTCTCTGATCTTGC 59.553 47.826 13.96 0.00 40.27 4.01
339 340 4.085009 TCTCAAGTCTCTGATCTTGCTCA 58.915 43.478 13.96 2.35 40.27 4.26
340 341 4.082300 TCTCAAGTCTCTGATCTTGCTCAC 60.082 45.833 13.96 0.00 40.27 3.51
342 343 2.818921 AGTCTCTGATCTTGCTCACCT 58.181 47.619 0.00 0.00 0.00 4.00
343 344 2.760092 AGTCTCTGATCTTGCTCACCTC 59.240 50.000 0.00 0.00 0.00 3.85
345 346 2.109774 CTCTGATCTTGCTCACCTCCT 58.890 52.381 0.00 0.00 0.00 3.69
346 347 2.101249 CTCTGATCTTGCTCACCTCCTC 59.899 54.545 0.00 0.00 0.00 3.71
349 350 1.333636 ATCTTGCTCACCTCCTCGGG 61.334 60.000 0.00 0.00 36.97 5.14
350 351 3.003173 TTGCTCACCTCCTCGGGG 61.003 66.667 0.00 0.00 37.63 5.73
351 352 3.846405 TTGCTCACCTCCTCGGGGT 62.846 63.158 0.00 0.00 37.50 4.95
352 353 2.043248 GCTCACCTCCTCGGGGTA 60.043 66.667 0.00 0.00 37.50 3.69
353 354 2.424733 GCTCACCTCCTCGGGGTAC 61.425 68.421 0.00 0.00 37.50 3.34
372 373 6.937436 GGTACCTTTTGATTCACCGATATT 57.063 37.500 4.06 0.00 0.00 1.28
373 374 6.956047 GGTACCTTTTGATTCACCGATATTC 58.044 40.000 4.06 0.00 0.00 1.75
374 375 6.017357 GGTACCTTTTGATTCACCGATATTCC 60.017 42.308 4.06 0.00 0.00 3.01
375 376 4.887655 ACCTTTTGATTCACCGATATTCCC 59.112 41.667 0.00 0.00 0.00 3.97
377 378 5.594317 CCTTTTGATTCACCGATATTCCCTT 59.406 40.000 0.00 0.00 0.00 3.95
379 380 4.351874 TGATTCACCGATATTCCCTTCC 57.648 45.455 0.00 0.00 0.00 3.46
380 381 3.973973 TGATTCACCGATATTCCCTTCCT 59.026 43.478 0.00 0.00 0.00 3.36
381 382 4.412199 TGATTCACCGATATTCCCTTCCTT 59.588 41.667 0.00 0.00 0.00 3.36
382 383 4.855298 TTCACCGATATTCCCTTCCTTT 57.145 40.909 0.00 0.00 0.00 3.11
383 384 4.855298 TCACCGATATTCCCTTCCTTTT 57.145 40.909 0.00 0.00 0.00 2.27
384 385 4.777463 TCACCGATATTCCCTTCCTTTTC 58.223 43.478 0.00 0.00 0.00 2.29
385 386 4.226394 TCACCGATATTCCCTTCCTTTTCA 59.774 41.667 0.00 0.00 0.00 2.69
386 387 4.576463 CACCGATATTCCCTTCCTTTTCAG 59.424 45.833 0.00 0.00 0.00 3.02
387 388 3.565902 CCGATATTCCCTTCCTTTTCAGC 59.434 47.826 0.00 0.00 0.00 4.26
388 389 3.248602 CGATATTCCCTTCCTTTTCAGCG 59.751 47.826 0.00 0.00 0.00 5.18
389 390 1.177401 ATTCCCTTCCTTTTCAGCGC 58.823 50.000 0.00 0.00 0.00 5.92
390 391 0.179004 TTCCCTTCCTTTTCAGCGCA 60.179 50.000 11.47 0.00 0.00 6.09
392 393 0.673437 CCCTTCCTTTTCAGCGCAAA 59.327 50.000 11.47 0.00 0.00 3.68
393 394 1.602920 CCCTTCCTTTTCAGCGCAAAC 60.603 52.381 11.47 0.00 0.00 2.93
394 395 1.398595 CTTCCTTTTCAGCGCAAACG 58.601 50.000 11.47 0.00 44.07 3.60
404 405 2.706432 CGCAAACGCACACACAGA 59.294 55.556 0.00 0.00 0.00 3.41
405 406 1.279539 CGCAAACGCACACACAGAT 59.720 52.632 0.00 0.00 0.00 2.90
408 409 1.780860 GCAAACGCACACACAGATTTC 59.219 47.619 0.00 0.00 0.00 2.17
409 410 2.384382 CAAACGCACACACAGATTTCC 58.616 47.619 0.00 0.00 0.00 3.13
410 411 0.586319 AACGCACACACAGATTTCCG 59.414 50.000 0.00 0.00 0.00 4.30
412 413 0.439985 CGCACACACAGATTTCCGAG 59.560 55.000 0.00 0.00 0.00 4.63
413 414 1.512926 GCACACACAGATTTCCGAGT 58.487 50.000 0.00 0.00 0.00 4.18
416 417 3.393800 CACACACAGATTTCCGAGTTCT 58.606 45.455 0.00 0.00 0.00 3.01
417 418 3.185188 CACACACAGATTTCCGAGTTCTG 59.815 47.826 7.69 7.69 42.05 3.02
419 420 3.430218 CACACAGATTTCCGAGTTCTGAC 59.570 47.826 13.69 0.00 39.36 3.51
421 422 2.632996 ACAGATTTCCGAGTTCTGACCA 59.367 45.455 13.69 0.00 39.36 4.02
422 423 3.261897 ACAGATTTCCGAGTTCTGACCAT 59.738 43.478 13.69 0.00 39.36 3.55
423 424 3.620374 CAGATTTCCGAGTTCTGACCATG 59.380 47.826 4.42 0.00 39.36 3.66
424 425 3.515502 AGATTTCCGAGTTCTGACCATGA 59.484 43.478 0.00 0.00 0.00 3.07
425 426 3.762407 TTTCCGAGTTCTGACCATGAA 57.238 42.857 0.00 0.00 0.00 2.57
426 427 3.981071 TTCCGAGTTCTGACCATGAAT 57.019 42.857 0.00 0.00 0.00 2.57
427 428 3.526931 TCCGAGTTCTGACCATGAATC 57.473 47.619 0.00 0.00 0.00 2.52
428 429 2.168521 TCCGAGTTCTGACCATGAATCC 59.831 50.000 0.00 0.00 0.00 3.01
430 431 2.169352 CGAGTTCTGACCATGAATCCCT 59.831 50.000 0.00 0.00 0.00 4.20
434 435 3.634397 TCTGACCATGAATCCCTCAAC 57.366 47.619 0.00 0.00 37.67 3.18
436 437 1.284785 TGACCATGAATCCCTCAACCC 59.715 52.381 0.00 0.00 37.67 4.11
437 438 0.631212 ACCATGAATCCCTCAACCCC 59.369 55.000 0.00 0.00 37.67 4.95
439 440 1.218704 CCATGAATCCCTCAACCCCAT 59.781 52.381 0.00 0.00 37.67 4.00
440 441 2.590821 CATGAATCCCTCAACCCCATC 58.409 52.381 0.00 0.00 37.67 3.51
442 443 0.179018 GAATCCCTCAACCCCATCGG 60.179 60.000 0.00 0.00 37.81 4.18
443 444 0.623324 AATCCCTCAACCCCATCGGA 60.623 55.000 0.00 0.00 34.64 4.55
444 445 0.401979 ATCCCTCAACCCCATCGGAT 60.402 55.000 0.00 0.00 34.64 4.18
445 446 1.054406 TCCCTCAACCCCATCGGATC 61.054 60.000 0.00 0.00 34.64 3.36
447 448 0.839946 CCTCAACCCCATCGGATCTT 59.160 55.000 0.00 0.00 34.64 2.40
448 449 1.202698 CCTCAACCCCATCGGATCTTC 60.203 57.143 0.00 0.00 34.64 2.87
450 451 0.179018 CAACCCCATCGGATCTTCCC 60.179 60.000 0.00 0.00 31.13 3.97
451 452 0.327576 AACCCCATCGGATCTTCCCT 60.328 55.000 0.00 0.00 31.13 4.20
452 453 0.327576 ACCCCATCGGATCTTCCCTT 60.328 55.000 0.00 0.00 31.13 3.95
454 455 0.398318 CCCATCGGATCTTCCCTTCC 59.602 60.000 0.00 0.00 31.13 3.46
455 456 1.428869 CCATCGGATCTTCCCTTCCT 58.571 55.000 0.00 0.00 31.13 3.36
456 457 1.346068 CCATCGGATCTTCCCTTCCTC 59.654 57.143 0.00 0.00 31.13 3.71
458 459 0.398664 TCGGATCTTCCCTTCCTCCC 60.399 60.000 0.00 0.00 31.13 4.30
459 460 1.411651 CGGATCTTCCCTTCCTCCCC 61.412 65.000 0.00 0.00 31.13 4.81
460 461 1.411651 GGATCTTCCCTTCCTCCCCG 61.412 65.000 0.00 0.00 0.00 5.73
461 462 0.398664 GATCTTCCCTTCCTCCCCGA 60.399 60.000 0.00 0.00 0.00 5.14
464 465 2.258748 CTTCCCTTCCTCCCCGAAGC 62.259 65.000 0.00 0.00 38.35 3.86
465 466 4.162690 CCCTTCCTCCCCGAAGCG 62.163 72.222 0.00 0.00 38.35 4.68
466 467 3.075005 CCTTCCTCCCCGAAGCGA 61.075 66.667 0.00 0.00 38.35 4.93
467 468 2.656069 CCTTCCTCCCCGAAGCGAA 61.656 63.158 0.00 0.00 38.35 4.70
468 469 1.522569 CTTCCTCCCCGAAGCGAAT 59.477 57.895 0.00 0.00 33.33 3.34
472 473 1.517832 CTCCCCGAAGCGAATCACT 59.482 57.895 0.00 0.00 0.00 3.41
473 474 0.108138 CTCCCCGAAGCGAATCACTT 60.108 55.000 0.00 0.00 0.00 3.16
474 475 0.108329 TCCCCGAAGCGAATCACTTC 60.108 55.000 1.15 1.15 40.13 3.01
475 476 1.090052 CCCCGAAGCGAATCACTTCC 61.090 60.000 5.54 0.00 40.37 3.46
478 479 1.676014 CCGAAGCGAATCACTTCCCTT 60.676 52.381 5.54 0.00 40.37 3.95
479 480 1.394917 CGAAGCGAATCACTTCCCTTG 59.605 52.381 5.54 0.00 40.37 3.61
480 481 2.699954 GAAGCGAATCACTTCCCTTGA 58.300 47.619 0.00 0.00 38.05 3.02
481 482 3.274288 GAAGCGAATCACTTCCCTTGAT 58.726 45.455 0.00 0.00 38.05 2.57
482 483 2.911484 AGCGAATCACTTCCCTTGATC 58.089 47.619 0.00 0.00 32.29 2.92
485 486 3.691609 GCGAATCACTTCCCTTGATCTTT 59.308 43.478 0.00 0.00 32.29 2.52
486 487 4.201861 GCGAATCACTTCCCTTGATCTTTC 60.202 45.833 0.00 0.00 32.29 2.62
487 488 4.333926 CGAATCACTTCCCTTGATCTTTCC 59.666 45.833 0.00 0.00 32.29 3.13
488 489 5.504853 GAATCACTTCCCTTGATCTTTCCT 58.495 41.667 0.00 0.00 32.29 3.36
490 491 4.911390 TCACTTCCCTTGATCTTTCCTTC 58.089 43.478 0.00 0.00 0.00 3.46
491 492 4.599241 TCACTTCCCTTGATCTTTCCTTCT 59.401 41.667 0.00 0.00 0.00 2.85
493 494 4.849235 ACTTCCCTTGATCTTTCCTTCTCT 59.151 41.667 0.00 0.00 0.00 3.10
495 496 5.850046 TCCCTTGATCTTTCCTTCTCTTT 57.150 39.130 0.00 0.00 0.00 2.52
496 497 6.206180 TCCCTTGATCTTTCCTTCTCTTTT 57.794 37.500 0.00 0.00 0.00 2.27
497 498 6.614657 TCCCTTGATCTTTCCTTCTCTTTTT 58.385 36.000 0.00 0.00 0.00 1.94
498 499 6.491403 TCCCTTGATCTTTCCTTCTCTTTTTG 59.509 38.462 0.00 0.00 0.00 2.44
499 500 6.155136 CCTTGATCTTTCCTTCTCTTTTTGC 58.845 40.000 0.00 0.00 0.00 3.68
500 501 5.712152 TGATCTTTCCTTCTCTTTTTGCC 57.288 39.130 0.00 0.00 0.00 4.52
501 502 5.388654 TGATCTTTCCTTCTCTTTTTGCCT 58.611 37.500 0.00 0.00 0.00 4.75
502 503 5.474876 TGATCTTTCCTTCTCTTTTTGCCTC 59.525 40.000 0.00 0.00 0.00 4.70
504 505 5.200483 TCTTTCCTTCTCTTTTTGCCTCAA 58.800 37.500 0.00 0.00 0.00 3.02
505 506 5.300286 TCTTTCCTTCTCTTTTTGCCTCAAG 59.700 40.000 0.00 0.00 0.00 3.02
506 507 4.437682 TCCTTCTCTTTTTGCCTCAAGA 57.562 40.909 0.00 0.00 0.00 3.02
509 510 5.008980 CCTTCTCTTTTTGCCTCAAGATCT 58.991 41.667 0.00 0.00 0.00 2.75
510 511 5.123661 CCTTCTCTTTTTGCCTCAAGATCTC 59.876 44.000 0.00 0.00 0.00 2.75
511 512 5.495926 TCTCTTTTTGCCTCAAGATCTCT 57.504 39.130 0.00 0.00 0.00 3.10
512 513 5.486526 TCTCTTTTTGCCTCAAGATCTCTC 58.513 41.667 0.00 0.00 0.00 3.20
513 514 5.012458 TCTCTTTTTGCCTCAAGATCTCTCA 59.988 40.000 0.00 0.00 0.00 3.27
514 515 4.999950 TCTTTTTGCCTCAAGATCTCTCAC 59.000 41.667 0.00 0.00 0.00 3.51
516 517 3.883830 TTGCCTCAAGATCTCTCACTC 57.116 47.619 0.00 0.00 0.00 3.51
517 518 2.106566 TGCCTCAAGATCTCTCACTCC 58.893 52.381 0.00 0.00 0.00 3.85
518 519 1.066908 GCCTCAAGATCTCTCACTCCG 59.933 57.143 0.00 0.00 0.00 4.63
519 520 1.680735 CCTCAAGATCTCTCACTCCGG 59.319 57.143 0.00 0.00 0.00 5.14
520 521 1.680735 CTCAAGATCTCTCACTCCGGG 59.319 57.143 0.00 0.00 0.00 5.73
523 524 2.286365 AGATCTCTCACTCCGGGATC 57.714 55.000 0.00 3.90 34.69 3.36
524 525 0.878416 GATCTCTCACTCCGGGATCG 59.122 60.000 0.00 0.00 0.00 3.69
549 550 4.057428 CGGATCTCCCCGGCGATC 62.057 72.222 9.30 14.64 45.43 3.69
550 551 4.057428 GGATCTCCCCGGCGATCG 62.057 72.222 11.69 11.69 37.26 3.69
551 552 4.726351 GATCTCCCCGGCGATCGC 62.726 72.222 31.52 31.52 41.06 4.58
561 562 2.352915 GCGATCGCCTCAGAGTCG 60.353 66.667 29.48 0.00 35.56 4.18
562 563 2.352915 CGATCGCCTCAGAGTCGC 60.353 66.667 0.26 0.00 0.00 5.19
563 564 2.026879 GATCGCCTCAGAGTCGCC 59.973 66.667 0.00 0.00 0.00 5.54
564 565 2.755876 ATCGCCTCAGAGTCGCCA 60.756 61.111 0.00 0.00 0.00 5.69
565 566 2.945398 GATCGCCTCAGAGTCGCCAC 62.945 65.000 0.00 0.00 0.00 5.01
579 580 3.691342 CCACGACAGGGCTTCCGA 61.691 66.667 0.00 0.00 35.17 4.55
580 581 2.579201 CACGACAGGGCTTCCGAT 59.421 61.111 0.00 0.00 35.17 4.18
582 583 0.174845 CACGACAGGGCTTCCGATAA 59.825 55.000 0.00 0.00 35.17 1.75
584 585 0.529992 CGACAGGGCTTCCGATAACC 60.530 60.000 0.00 0.00 35.17 2.85
585 586 0.539986 GACAGGGCTTCCGATAACCA 59.460 55.000 0.00 0.00 35.17 3.67
586 587 0.252197 ACAGGGCTTCCGATAACCAC 59.748 55.000 0.00 0.00 35.17 4.16
588 589 2.178235 GGGCTTCCGATAACCACGC 61.178 63.158 0.00 0.00 0.00 5.34
591 592 1.480219 GCTTCCGATAACCACGCTCG 61.480 60.000 0.00 0.00 0.00 5.03
592 593 1.480219 CTTCCGATAACCACGCTCGC 61.480 60.000 0.00 0.00 0.00 5.03
593 594 2.894240 TTCCGATAACCACGCTCGCC 62.894 60.000 0.00 0.00 0.00 5.54
595 596 1.591594 CGATAACCACGCTCGCCAT 60.592 57.895 0.00 0.00 0.00 4.40
596 597 1.821241 CGATAACCACGCTCGCCATG 61.821 60.000 0.00 0.00 0.00 3.66
597 598 2.105960 GATAACCACGCTCGCCATGC 62.106 60.000 0.00 0.00 0.00 4.06
617 618 4.619973 TGCCACTGCACTAAGAAAAATTG 58.380 39.130 0.00 0.00 44.23 2.32
776 783 4.347360 ACTAACGAGCCCTAACAAAACT 57.653 40.909 0.00 0.00 0.00 2.66
814 821 8.362639 TCCTAACGAATTACAGTTAAGTCAGTT 58.637 33.333 0.00 0.00 35.39 3.16
832 839 4.124238 CAGTTTTAACACGAGGACTTGGA 58.876 43.478 0.00 0.00 0.00 3.53
835 842 5.238650 AGTTTTAACACGAGGACTTGGATTG 59.761 40.000 0.00 0.00 0.00 2.67
842 850 1.537202 GAGGACTTGGATTGTGTGTGC 59.463 52.381 0.00 0.00 0.00 4.57
843 851 1.133823 AGGACTTGGATTGTGTGTGCA 60.134 47.619 0.00 0.00 0.00 4.57
881 890 3.386486 TGTCATTTCTGTGTACCGTGAC 58.614 45.455 0.00 0.00 36.09 3.67
882 891 3.181474 TGTCATTTCTGTGTACCGTGACA 60.181 43.478 0.00 0.00 41.27 3.58
912 926 4.703897 CTGGTGGTGTGGTGTATATAAGG 58.296 47.826 0.00 0.00 0.00 2.69
998 1015 3.316308 TGCTCTGAAGAAAAGGAAAGCAC 59.684 43.478 0.00 0.00 33.88 4.40
1033 1062 2.283894 TTCTGCTCCCGCTCCTCA 60.284 61.111 0.00 0.00 36.97 3.86
1154 1189 3.330853 GCGTGCCCATCGATCGAC 61.331 66.667 22.06 8.31 0.00 4.20
1238 3143 5.924254 TGTTTCTGATTACTCGATTGTCGTT 59.076 36.000 0.00 0.00 41.35 3.85
1239 3144 6.128929 TGTTTCTGATTACTCGATTGTCGTTG 60.129 38.462 0.00 0.00 41.35 4.10
1372 3422 3.345808 GTGCGCTGCAAGGACGAA 61.346 61.111 9.73 0.00 41.47 3.85
1664 3733 5.696270 TGCAATCATCAATACATCTACGACC 59.304 40.000 0.00 0.00 0.00 4.79
1696 3767 3.260884 TCGAGCTGGTAGAATTTGGAAGT 59.739 43.478 0.00 0.00 0.00 3.01
1699 3770 5.817816 CGAGCTGGTAGAATTTGGAAGTTAT 59.182 40.000 0.00 0.00 0.00 1.89
1707 3778 4.396166 AGAATTTGGAAGTTATGCTCACGG 59.604 41.667 0.00 0.00 0.00 4.94
1894 3974 4.988716 TGGAGGTCCCTGACGCGT 62.989 66.667 13.85 13.85 32.65 6.01
1987 4067 1.080298 GTACGACGGGAAGTGGGTG 60.080 63.158 0.00 0.00 32.45 4.61
2136 4227 1.003355 CGAGGCAAGCCAAGAGGAA 60.003 57.895 14.40 0.00 38.92 3.36
2261 4352 4.640789 AGAGATTAGTAACTGACGCAGG 57.359 45.455 10.80 0.00 35.51 4.85
2306 4397 3.644966 TCCAACTCTTGTGGACAAACT 57.355 42.857 0.00 0.00 35.15 2.66
2334 4425 0.389556 CTGCAGCTGACGTGTGAGAT 60.390 55.000 20.43 0.00 0.00 2.75
2335 4426 0.887933 TGCAGCTGACGTGTGAGATA 59.112 50.000 20.43 0.00 0.00 1.98
2336 4427 1.272781 GCAGCTGACGTGTGAGATAC 58.727 55.000 20.43 0.00 0.00 2.24
2372 4463 4.512944 CAGTAGCAACCATGAAGCGATAAT 59.487 41.667 0.00 0.00 0.00 1.28
2383 4474 1.267121 AGCGATAATGGGTAGCGGAT 58.733 50.000 0.00 0.00 41.93 4.18
2425 4516 4.461081 TGAATCCCCGGACAAAATACAAAG 59.539 41.667 0.73 0.00 0.00 2.77
2530 4621 1.459592 CTTTACTCGCCTGACAAACGG 59.540 52.381 0.00 0.00 0.00 4.44
2571 4663 0.989890 CTCGATCGTCCCGTTTGAAC 59.010 55.000 15.94 0.00 0.00 3.18
2593 4685 0.958822 GTTGGTTGGTGGCGAGATTT 59.041 50.000 0.00 0.00 0.00 2.17
2630 4734 4.566987 GAAACTAGTCGTTGGTCTTCCAT 58.433 43.478 0.00 0.00 43.91 3.41
2684 4825 2.352503 AAAGCACAATTCGGACATGC 57.647 45.000 0.00 0.00 36.52 4.06
2700 4841 0.252197 ATGCATGCACTGAGCTGAGA 59.748 50.000 25.37 0.00 45.94 3.27
2724 4964 4.980805 GGTGACTCGGTGCGCCAA 62.981 66.667 18.18 0.00 34.84 4.52
2725 4965 3.414700 GTGACTCGGTGCGCCAAG 61.415 66.667 18.18 10.48 34.09 3.61
2779 5021 1.115467 CCGCAACCATCTACTCCTCT 58.885 55.000 0.00 0.00 0.00 3.69
2780 5022 1.067821 CCGCAACCATCTACTCCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
2781 5023 1.067821 CGCAACCATCTACTCCTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
2782 5024 2.393646 GCAACCATCTACTCCTCTCCT 58.606 52.381 0.00 0.00 0.00 3.69
2838 5100 2.325583 AGTGTATGTACCGGCCAATG 57.674 50.000 0.00 0.00 0.00 2.82
2843 5105 3.134985 TGTATGTACCGGCCAATGTGTAT 59.865 43.478 0.00 0.00 0.00 2.29
2844 5106 2.031258 TGTACCGGCCAATGTGTATG 57.969 50.000 0.00 0.00 0.00 2.39
2845 5107 1.279558 TGTACCGGCCAATGTGTATGT 59.720 47.619 0.00 0.00 0.00 2.29
2846 5108 2.290387 TGTACCGGCCAATGTGTATGTT 60.290 45.455 0.00 0.00 0.00 2.71
2848 5110 1.173043 CCGGCCAATGTGTATGTTGT 58.827 50.000 2.24 0.00 0.00 3.32
2852 5121 2.352617 GGCCAATGTGTATGTTGTGTGG 60.353 50.000 0.00 0.00 0.00 4.17
2971 5240 1.201954 CCATGCAATCTGTCGAACACG 60.202 52.381 0.00 0.00 0.00 4.49
2972 5241 1.078709 ATGCAATCTGTCGAACACGG 58.921 50.000 0.00 0.00 0.00 4.94
2974 5243 1.416049 CAATCTGTCGAACACGGCG 59.584 57.895 4.80 4.80 34.18 6.46
2976 5245 3.567478 ATCTGTCGAACACGGCGCA 62.567 57.895 10.83 0.00 34.18 6.09
3018 5306 0.996727 GCAAAACGTGCGTGTCCATC 60.997 55.000 0.00 0.00 45.10 3.51
3045 5333 5.279708 CCCTGAACTCCATGTAGATATGTCC 60.280 48.000 0.00 0.00 0.00 4.02
3079 5367 0.806102 TGAGGCTAAATCGCGAGCAC 60.806 55.000 16.66 10.68 40.64 4.40
3108 5396 5.978814 CTGGAATAGCTGGTGTAGTTAACT 58.021 41.667 13.68 13.68 0.00 2.24
3109 5397 5.730550 TGGAATAGCTGGTGTAGTTAACTG 58.269 41.667 18.56 1.16 0.00 3.16
3110 5398 5.116882 GGAATAGCTGGTGTAGTTAACTGG 58.883 45.833 18.56 2.94 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.864334 CCCCCTGTCATGGCGAGC 62.864 72.222 0.00 0.00 0.00 5.03
4 5 4.864334 CGAGCCCCCTGTCATGGC 62.864 72.222 0.00 0.00 45.70 4.40
6 7 2.187946 GTCGAGCCCCCTGTCATG 59.812 66.667 0.00 0.00 0.00 3.07
8 9 3.957435 ATCGTCGAGCCCCCTGTCA 62.957 63.158 0.00 0.00 0.00 3.58
9 10 3.148279 ATCGTCGAGCCCCCTGTC 61.148 66.667 0.00 0.00 0.00 3.51
11 12 4.227134 CCATCGTCGAGCCCCCTG 62.227 72.222 0.00 0.00 0.00 4.45
13 14 2.836360 TACCATCGTCGAGCCCCC 60.836 66.667 0.00 0.00 0.00 5.40
14 15 1.179814 ATCTACCATCGTCGAGCCCC 61.180 60.000 0.00 0.00 0.00 5.80
15 16 0.039074 CATCTACCATCGTCGAGCCC 60.039 60.000 0.00 0.00 0.00 5.19
16 17 0.039074 CCATCTACCATCGTCGAGCC 60.039 60.000 0.00 0.00 0.00 4.70
18 19 1.537638 CTCCCATCTACCATCGTCGAG 59.462 57.143 0.00 0.00 0.00 4.04
19 20 1.133884 ACTCCCATCTACCATCGTCGA 60.134 52.381 0.00 0.00 0.00 4.20
20 21 1.001268 CACTCCCATCTACCATCGTCG 60.001 57.143 0.00 0.00 0.00 5.12
21 22 1.341531 CCACTCCCATCTACCATCGTC 59.658 57.143 0.00 0.00 0.00 4.20
22 23 1.343075 ACCACTCCCATCTACCATCGT 60.343 52.381 0.00 0.00 0.00 3.73
23 24 1.069204 CACCACTCCCATCTACCATCG 59.931 57.143 0.00 0.00 0.00 3.84
24 25 2.398588 TCACCACTCCCATCTACCATC 58.601 52.381 0.00 0.00 0.00 3.51
25 26 2.568546 TCACCACTCCCATCTACCAT 57.431 50.000 0.00 0.00 0.00 3.55
26 27 2.304761 GTTTCACCACTCCCATCTACCA 59.695 50.000 0.00 0.00 0.00 3.25
27 28 2.572104 AGTTTCACCACTCCCATCTACC 59.428 50.000 0.00 0.00 0.00 3.18
28 29 3.983044 AGTTTCACCACTCCCATCTAC 57.017 47.619 0.00 0.00 0.00 2.59
29 30 3.650942 ACAAGTTTCACCACTCCCATCTA 59.349 43.478 0.00 0.00 0.00 1.98
31 32 2.554032 CACAAGTTTCACCACTCCCATC 59.446 50.000 0.00 0.00 0.00 3.51
32 33 2.586425 CACAAGTTTCACCACTCCCAT 58.414 47.619 0.00 0.00 0.00 4.00
33 34 1.409521 CCACAAGTTTCACCACTCCCA 60.410 52.381 0.00 0.00 0.00 4.37
35 36 0.668535 GCCACAAGTTTCACCACTCC 59.331 55.000 0.00 0.00 0.00 3.85
36 37 1.604278 GAGCCACAAGTTTCACCACTC 59.396 52.381 0.00 0.00 0.00 3.51
38 39 1.604278 GAGAGCCACAAGTTTCACCAC 59.396 52.381 0.00 0.00 0.00 4.16
39 40 1.476833 GGAGAGCCACAAGTTTCACCA 60.477 52.381 0.00 0.00 0.00 4.17
40 41 1.239347 GGAGAGCCACAAGTTTCACC 58.761 55.000 0.00 0.00 0.00 4.02
41 42 1.239347 GGGAGAGCCACAAGTTTCAC 58.761 55.000 0.00 0.00 35.15 3.18
42 43 0.110486 GGGGAGAGCCACAAGTTTCA 59.890 55.000 0.00 0.00 37.60 2.69
43 44 0.402121 AGGGGAGAGCCACAAGTTTC 59.598 55.000 0.00 0.00 41.39 2.78
46 47 1.920835 GGAGGGGAGAGCCACAAGT 60.921 63.158 0.00 0.00 41.39 3.16
47 48 2.674220 GGGAGGGGAGAGCCACAAG 61.674 68.421 0.00 0.00 41.39 3.16
48 49 2.610859 GGGAGGGGAGAGCCACAA 60.611 66.667 0.00 0.00 41.39 3.33
49 50 4.741239 GGGGAGGGGAGAGCCACA 62.741 72.222 0.00 0.00 41.39 4.17
53 54 2.123033 GAGAGGGGAGGGGAGAGC 60.123 72.222 0.00 0.00 0.00 4.09
54 55 0.998945 AGAGAGAGGGGAGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
55 56 1.087725 AGAGAGAGGGGAGGGGAGA 59.912 63.158 0.00 0.00 0.00 3.71
57 58 2.328589 CCAGAGAGAGGGGAGGGGA 61.329 68.421 0.00 0.00 0.00 4.81
59 60 0.689412 GAACCAGAGAGAGGGGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
60 61 0.338120 AGAACCAGAGAGAGGGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
61 62 2.246091 AAGAACCAGAGAGAGGGGAG 57.754 55.000 0.00 0.00 0.00 4.30
62 63 2.723530 AAAGAACCAGAGAGAGGGGA 57.276 50.000 0.00 0.00 0.00 4.81
63 64 4.962995 TGTATAAAGAACCAGAGAGAGGGG 59.037 45.833 0.00 0.00 0.00 4.79
64 65 5.163395 GGTGTATAAAGAACCAGAGAGAGGG 60.163 48.000 0.00 0.00 33.94 4.30
66 67 5.422331 TGGGTGTATAAAGAACCAGAGAGAG 59.578 44.000 0.00 0.00 35.56 3.20
68 69 5.395768 CCTGGGTGTATAAAGAACCAGAGAG 60.396 48.000 8.11 0.00 46.38 3.20
69 70 4.469945 CCTGGGTGTATAAAGAACCAGAGA 59.530 45.833 8.11 0.00 46.38 3.10
70 71 4.469945 TCCTGGGTGTATAAAGAACCAGAG 59.530 45.833 8.11 0.00 46.38 3.35
71 72 4.431378 TCCTGGGTGTATAAAGAACCAGA 58.569 43.478 8.11 0.00 46.38 3.86
73 74 4.165372 GGATCCTGGGTGTATAAAGAACCA 59.835 45.833 3.84 0.00 35.56 3.67
74 75 4.165372 TGGATCCTGGGTGTATAAAGAACC 59.835 45.833 14.23 0.00 0.00 3.62
75 76 5.367945 TGGATCCTGGGTGTATAAAGAAC 57.632 43.478 14.23 0.00 0.00 3.01
76 77 5.491078 AGTTGGATCCTGGGTGTATAAAGAA 59.509 40.000 14.23 0.00 0.00 2.52
77 78 5.036916 AGTTGGATCCTGGGTGTATAAAGA 58.963 41.667 14.23 0.00 0.00 2.52
78 79 5.373812 AGTTGGATCCTGGGTGTATAAAG 57.626 43.478 14.23 0.00 0.00 1.85
81 82 4.631234 AGAAGTTGGATCCTGGGTGTATA 58.369 43.478 14.23 0.00 0.00 1.47
82 83 3.456277 GAGAAGTTGGATCCTGGGTGTAT 59.544 47.826 14.23 0.00 0.00 2.29
83 84 2.838202 GAGAAGTTGGATCCTGGGTGTA 59.162 50.000 14.23 0.00 0.00 2.90
84 85 1.630878 GAGAAGTTGGATCCTGGGTGT 59.369 52.381 14.23 0.00 0.00 4.16
85 86 1.065126 GGAGAAGTTGGATCCTGGGTG 60.065 57.143 14.23 0.00 0.00 4.61
87 88 1.488393 GAGGAGAAGTTGGATCCTGGG 59.512 57.143 14.23 0.00 43.57 4.45
88 89 1.488393 GGAGGAGAAGTTGGATCCTGG 59.512 57.143 14.23 0.00 43.57 4.45
89 90 1.137872 CGGAGGAGAAGTTGGATCCTG 59.862 57.143 14.23 0.00 43.57 3.86
90 91 1.490574 CGGAGGAGAAGTTGGATCCT 58.509 55.000 14.23 1.39 46.22 3.24
105 106 1.303236 TGTGGATGGTTTGCCGGAG 60.303 57.895 5.05 0.00 37.67 4.63
106 107 1.303236 CTGTGGATGGTTTGCCGGA 60.303 57.895 5.05 0.00 37.67 5.14
107 108 2.342650 CCTGTGGATGGTTTGCCGG 61.343 63.158 0.00 0.00 37.67 6.13
108 109 2.993471 GCCTGTGGATGGTTTGCCG 61.993 63.158 0.00 0.00 37.67 5.69
109 110 1.259840 ATGCCTGTGGATGGTTTGCC 61.260 55.000 0.00 0.00 0.00 4.52
110 111 0.609662 AATGCCTGTGGATGGTTTGC 59.390 50.000 0.00 0.00 0.00 3.68
111 112 1.894466 TCAATGCCTGTGGATGGTTTG 59.106 47.619 0.00 0.00 0.00 2.93
112 113 2.307496 TCAATGCCTGTGGATGGTTT 57.693 45.000 0.00 0.00 0.00 3.27
114 115 2.511218 AGTATCAATGCCTGTGGATGGT 59.489 45.455 0.00 0.00 0.00 3.55
116 117 4.063689 GAGAGTATCAATGCCTGTGGATG 58.936 47.826 0.00 0.00 37.82 3.51
119 120 3.133542 TCAGAGAGTATCAATGCCTGTGG 59.866 47.826 0.00 0.00 37.82 4.17
120 121 4.397481 TCAGAGAGTATCAATGCCTGTG 57.603 45.455 0.00 0.00 37.82 3.66
121 122 5.627182 AATCAGAGAGTATCAATGCCTGT 57.373 39.130 0.00 0.00 37.82 4.00
124 125 6.017275 CCAAGAAATCAGAGAGTATCAATGCC 60.017 42.308 0.00 0.00 37.82 4.40
125 126 6.513066 GCCAAGAAATCAGAGAGTATCAATGC 60.513 42.308 0.00 0.00 37.82 3.56
129 130 5.660417 AGAGCCAAGAAATCAGAGAGTATCA 59.340 40.000 0.00 0.00 37.82 2.15
131 132 5.660417 TCAGAGCCAAGAAATCAGAGAGTAT 59.340 40.000 0.00 0.00 0.00 2.12
132 133 5.019470 TCAGAGCCAAGAAATCAGAGAGTA 58.981 41.667 0.00 0.00 0.00 2.59
133 134 3.837146 TCAGAGCCAAGAAATCAGAGAGT 59.163 43.478 0.00 0.00 0.00 3.24
135 136 5.183969 CAATCAGAGCCAAGAAATCAGAGA 58.816 41.667 0.00 0.00 0.00 3.10
136 137 4.201930 GCAATCAGAGCCAAGAAATCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
137 138 3.693085 GCAATCAGAGCCAAGAAATCAGA 59.307 43.478 0.00 0.00 0.00 3.27
138 139 3.442625 TGCAATCAGAGCCAAGAAATCAG 59.557 43.478 0.00 0.00 0.00 2.90
139 140 3.192001 GTGCAATCAGAGCCAAGAAATCA 59.808 43.478 0.00 0.00 0.00 2.57
140 141 3.192001 TGTGCAATCAGAGCCAAGAAATC 59.808 43.478 0.00 0.00 0.00 2.17
141 142 3.159472 TGTGCAATCAGAGCCAAGAAAT 58.841 40.909 0.00 0.00 0.00 2.17
142 143 2.585330 TGTGCAATCAGAGCCAAGAAA 58.415 42.857 0.00 0.00 0.00 2.52
143 144 2.275134 TGTGCAATCAGAGCCAAGAA 57.725 45.000 0.00 0.00 0.00 2.52
145 146 3.011818 TGTATGTGCAATCAGAGCCAAG 58.988 45.455 0.00 0.00 0.00 3.61
146 147 3.011818 CTGTATGTGCAATCAGAGCCAA 58.988 45.455 0.00 0.00 0.00 4.52
147 148 2.236893 TCTGTATGTGCAATCAGAGCCA 59.763 45.455 0.00 0.00 33.77 4.75
149 150 4.378774 AGATCTGTATGTGCAATCAGAGC 58.621 43.478 14.58 14.58 41.62 4.09
150 151 4.989797 GGAGATCTGTATGTGCAATCAGAG 59.010 45.833 0.00 0.68 39.69 3.35
151 152 4.406649 TGGAGATCTGTATGTGCAATCAGA 59.593 41.667 0.00 11.70 40.43 3.27
152 153 4.700700 TGGAGATCTGTATGTGCAATCAG 58.299 43.478 0.00 0.00 0.00 2.90
155 156 5.104610 AGTCTTGGAGATCTGTATGTGCAAT 60.105 40.000 0.00 0.00 36.37 3.56
156 157 4.223700 AGTCTTGGAGATCTGTATGTGCAA 59.776 41.667 0.00 0.00 34.88 4.08
158 159 4.399004 AGTCTTGGAGATCTGTATGTGC 57.601 45.455 0.00 0.00 0.00 4.57
173 174 0.676466 TGGTATGCGCCCAAGTCTTG 60.676 55.000 4.18 5.53 0.00 3.02
176 177 2.112815 GGTGGTATGCGCCCAAGTC 61.113 63.158 4.18 0.00 32.72 3.01
177 178 2.045340 GGTGGTATGCGCCCAAGT 60.045 61.111 4.18 0.00 32.72 3.16
178 179 2.828549 GGGTGGTATGCGCCCAAG 60.829 66.667 4.18 0.00 41.93 3.61
179 180 4.434354 GGGGTGGTATGCGCCCAA 62.434 66.667 4.18 0.00 44.07 4.12
184 185 1.001393 ACAAAGGGGGTGGTATGCG 60.001 57.895 0.00 0.00 0.00 4.73
185 186 0.331616 AGACAAAGGGGGTGGTATGC 59.668 55.000 0.00 0.00 0.00 3.14
186 187 1.340991 CCAGACAAAGGGGGTGGTATG 60.341 57.143 0.00 0.00 0.00 2.39
189 190 1.699930 ACCAGACAAAGGGGGTGGT 60.700 57.895 0.00 0.00 36.66 4.16
190 191 1.228552 CACCAGACAAAGGGGGTGG 60.229 63.158 0.00 0.00 45.48 4.61
191 192 1.228552 CCACCAGACAAAGGGGGTG 60.229 63.158 0.00 0.00 45.11 4.61
192 193 3.261354 CCACCAGACAAAGGGGGT 58.739 61.111 0.00 0.00 45.11 4.95
194 195 1.074951 GACCCACCAGACAAAGGGG 59.925 63.158 0.00 0.00 45.83 4.79
195 196 1.302511 CGACCCACCAGACAAAGGG 60.303 63.158 0.00 0.00 46.96 3.95
196 197 1.302511 CCGACCCACCAGACAAAGG 60.303 63.158 0.00 0.00 0.00 3.11
199 200 2.525124 ATGCCGACCCACCAGACAA 61.525 57.895 0.00 0.00 0.00 3.18
200 201 2.927856 ATGCCGACCCACCAGACA 60.928 61.111 0.00 0.00 0.00 3.41
201 202 2.436646 CATGCCGACCCACCAGAC 60.437 66.667 0.00 0.00 0.00 3.51
202 203 2.063015 AAACATGCCGACCCACCAGA 62.063 55.000 0.00 0.00 0.00 3.86
203 204 1.603455 AAACATGCCGACCCACCAG 60.603 57.895 0.00 0.00 0.00 4.00
205 206 1.586154 CTCAAACATGCCGACCCACC 61.586 60.000 0.00 0.00 0.00 4.61
207 208 0.327924 ATCTCAAACATGCCGACCCA 59.672 50.000 0.00 0.00 0.00 4.51
208 209 1.017387 GATCTCAAACATGCCGACCC 58.983 55.000 0.00 0.00 0.00 4.46
209 210 1.936547 GAGATCTCAAACATGCCGACC 59.063 52.381 18.11 0.00 0.00 4.79
210 211 1.936547 GGAGATCTCAAACATGCCGAC 59.063 52.381 23.85 0.00 0.00 4.79
213 214 2.019984 GGTGGAGATCTCAAACATGCC 58.980 52.381 23.85 6.51 0.00 4.40
214 215 2.715046 TGGTGGAGATCTCAAACATGC 58.285 47.619 23.85 9.53 0.00 4.06
215 216 3.128242 GCTTGGTGGAGATCTCAAACATG 59.872 47.826 18.76 20.35 28.85 3.21
216 217 3.350833 GCTTGGTGGAGATCTCAAACAT 58.649 45.455 18.76 0.00 28.85 2.71
217 218 2.553028 GGCTTGGTGGAGATCTCAAACA 60.553 50.000 23.85 19.36 0.00 2.83
218 219 2.087646 GGCTTGGTGGAGATCTCAAAC 58.912 52.381 23.85 16.71 0.00 2.93
220 221 1.661463 AGGCTTGGTGGAGATCTCAA 58.339 50.000 23.85 10.78 0.00 3.02
221 222 1.661463 AAGGCTTGGTGGAGATCTCA 58.339 50.000 23.85 7.82 0.00 3.27
222 223 2.637947 GAAAGGCTTGGTGGAGATCTC 58.362 52.381 14.75 14.75 0.00 2.75
223 224 1.283321 GGAAAGGCTTGGTGGAGATCT 59.717 52.381 0.00 0.00 0.00 2.75
224 225 1.283321 AGGAAAGGCTTGGTGGAGATC 59.717 52.381 0.00 0.00 0.00 2.75
226 227 1.149101 AAGGAAAGGCTTGGTGGAGA 58.851 50.000 0.00 0.00 0.00 3.71
228 229 1.703411 CAAAGGAAAGGCTTGGTGGA 58.297 50.000 0.00 0.00 0.00 4.02
229 230 0.033920 GCAAAGGAAAGGCTTGGTGG 59.966 55.000 0.00 0.00 0.00 4.61
230 231 0.318955 CGCAAAGGAAAGGCTTGGTG 60.319 55.000 0.00 0.00 0.00 4.17
231 232 0.755327 ACGCAAAGGAAAGGCTTGGT 60.755 50.000 0.00 0.00 0.00 3.67
232 233 0.039165 GACGCAAAGGAAAGGCTTGG 60.039 55.000 0.00 0.00 0.00 3.61
233 234 0.954452 AGACGCAAAGGAAAGGCTTG 59.046 50.000 0.00 0.00 0.00 4.01
236 237 2.094762 TCTAGACGCAAAGGAAAGGC 57.905 50.000 0.00 0.00 0.00 4.35
237 238 4.116238 GAGATCTAGACGCAAAGGAAAGG 58.884 47.826 0.00 0.00 0.00 3.11
239 240 5.407407 AAGAGATCTAGACGCAAAGGAAA 57.593 39.130 0.00 0.00 0.00 3.13
240 241 5.047306 TGAAAGAGATCTAGACGCAAAGGAA 60.047 40.000 0.00 0.00 0.00 3.36
241 242 4.462834 TGAAAGAGATCTAGACGCAAAGGA 59.537 41.667 0.00 0.00 0.00 3.36
242 243 4.564769 GTGAAAGAGATCTAGACGCAAAGG 59.435 45.833 0.00 0.00 0.00 3.11
246 247 4.783764 TTGTGAAAGAGATCTAGACGCA 57.216 40.909 0.00 0.00 0.00 5.24
247 248 6.533367 AGATTTTGTGAAAGAGATCTAGACGC 59.467 38.462 0.00 0.00 0.00 5.19
248 249 9.743057 ATAGATTTTGTGAAAGAGATCTAGACG 57.257 33.333 0.00 0.00 0.00 4.18
252 253 9.838339 GGGAATAGATTTTGTGAAAGAGATCTA 57.162 33.333 0.00 0.00 0.00 1.98
254 255 7.013750 GGGGGAATAGATTTTGTGAAAGAGATC 59.986 40.741 0.00 0.00 0.00 2.75
255 256 6.836007 GGGGGAATAGATTTTGTGAAAGAGAT 59.164 38.462 0.00 0.00 0.00 2.75
256 257 6.187682 GGGGGAATAGATTTTGTGAAAGAGA 58.812 40.000 0.00 0.00 0.00 3.10
259 260 6.603940 TTGGGGGAATAGATTTTGTGAAAG 57.396 37.500 0.00 0.00 0.00 2.62
261 262 6.502138 AGATTGGGGGAATAGATTTTGTGAA 58.498 36.000 0.00 0.00 0.00 3.18
262 263 6.091076 AGATTGGGGGAATAGATTTTGTGA 57.909 37.500 0.00 0.00 0.00 3.58
263 264 5.302823 GGAGATTGGGGGAATAGATTTTGTG 59.697 44.000 0.00 0.00 0.00 3.33
264 265 5.458595 GGAGATTGGGGGAATAGATTTTGT 58.541 41.667 0.00 0.00 0.00 2.83
265 266 4.835056 GGGAGATTGGGGGAATAGATTTTG 59.165 45.833 0.00 0.00 0.00 2.44
266 267 4.140686 GGGGAGATTGGGGGAATAGATTTT 60.141 45.833 0.00 0.00 0.00 1.82
267 268 3.402708 GGGGAGATTGGGGGAATAGATTT 59.597 47.826 0.00 0.00 0.00 2.17
269 270 2.187767 AGGGGAGATTGGGGGAATAGAT 59.812 50.000 0.00 0.00 0.00 1.98
270 271 1.590590 AGGGGAGATTGGGGGAATAGA 59.409 52.381 0.00 0.00 0.00 1.98
271 272 1.988846 GAGGGGAGATTGGGGGAATAG 59.011 57.143 0.00 0.00 0.00 1.73
272 273 1.299942 TGAGGGGAGATTGGGGGAATA 59.700 52.381 0.00 0.00 0.00 1.75
273 274 0.047802 TGAGGGGAGATTGGGGGAAT 59.952 55.000 0.00 0.00 0.00 3.01
274 275 0.047802 ATGAGGGGAGATTGGGGGAA 59.952 55.000 0.00 0.00 0.00 3.97
275 276 0.047802 AATGAGGGGAGATTGGGGGA 59.952 55.000 0.00 0.00 0.00 4.81
276 277 0.936691 AAATGAGGGGAGATTGGGGG 59.063 55.000 0.00 0.00 0.00 5.40
278 279 3.607490 ATCAAATGAGGGGAGATTGGG 57.393 47.619 0.00 0.00 0.00 4.12
279 280 5.302823 GGTAAATCAAATGAGGGGAGATTGG 59.697 44.000 0.00 0.00 0.00 3.16
280 281 6.131961 AGGTAAATCAAATGAGGGGAGATTG 58.868 40.000 0.00 0.00 0.00 2.67
282 283 6.131961 CAAGGTAAATCAAATGAGGGGAGAT 58.868 40.000 0.00 0.00 0.00 2.75
283 284 5.509498 CAAGGTAAATCAAATGAGGGGAGA 58.491 41.667 0.00 0.00 0.00 3.71
285 286 4.023291 GCAAGGTAAATCAAATGAGGGGA 58.977 43.478 0.00 0.00 0.00 4.81
287 288 3.132824 GGGCAAGGTAAATCAAATGAGGG 59.867 47.826 0.00 0.00 0.00 4.30
288 289 3.132824 GGGGCAAGGTAAATCAAATGAGG 59.867 47.826 0.00 0.00 0.00 3.86
289 290 4.026052 AGGGGCAAGGTAAATCAAATGAG 58.974 43.478 0.00 0.00 0.00 2.90
291 292 3.768757 TCAGGGGCAAGGTAAATCAAATG 59.231 43.478 0.00 0.00 0.00 2.32
293 294 3.534357 TCAGGGGCAAGGTAAATCAAA 57.466 42.857 0.00 0.00 0.00 2.69
294 295 3.627237 GGATCAGGGGCAAGGTAAATCAA 60.627 47.826 0.00 0.00 0.00 2.57
298 299 1.564348 GAGGATCAGGGGCAAGGTAAA 59.436 52.381 0.00 0.00 33.17 2.01
299 300 1.213296 GAGGATCAGGGGCAAGGTAA 58.787 55.000 0.00 0.00 33.17 2.85
301 302 0.985490 GAGAGGATCAGGGGCAAGGT 60.985 60.000 0.00 0.00 37.82 3.50
302 303 0.984961 TGAGAGGATCAGGGGCAAGG 60.985 60.000 0.00 0.00 37.82 3.61
303 304 0.914644 TTGAGAGGATCAGGGGCAAG 59.085 55.000 0.00 0.00 39.68 4.01
304 305 0.914644 CTTGAGAGGATCAGGGGCAA 59.085 55.000 0.00 0.00 39.68 4.52
305 306 0.252881 ACTTGAGAGGATCAGGGGCA 60.253 55.000 0.00 0.00 39.29 5.36
306 307 0.467804 GACTTGAGAGGATCAGGGGC 59.532 60.000 0.00 0.00 39.29 5.80
307 308 2.038659 GAGACTTGAGAGGATCAGGGG 58.961 57.143 0.00 0.00 39.29 4.79
308 309 2.694628 CAGAGACTTGAGAGGATCAGGG 59.305 54.545 0.00 0.00 39.29 4.45
309 310 3.630168 TCAGAGACTTGAGAGGATCAGG 58.370 50.000 0.00 0.00 39.68 3.86
310 311 5.135383 AGATCAGAGACTTGAGAGGATCAG 58.865 45.833 0.00 0.00 39.68 2.90
311 312 5.128033 AGATCAGAGACTTGAGAGGATCA 57.872 43.478 0.00 0.00 37.82 2.92
313 314 4.099881 GCAAGATCAGAGACTTGAGAGGAT 59.900 45.833 18.59 0.00 43.98 3.24
314 315 3.446873 GCAAGATCAGAGACTTGAGAGGA 59.553 47.826 18.59 0.00 43.98 3.71
315 316 3.448301 AGCAAGATCAGAGACTTGAGAGG 59.552 47.826 18.59 0.00 43.98 3.69
319 320 3.056250 GGTGAGCAAGATCAGAGACTTGA 60.056 47.826 18.59 0.00 43.98 3.02
320 321 3.055963 AGGTGAGCAAGATCAGAGACTTG 60.056 47.826 12.95 12.95 44.05 3.16
321 322 3.172339 AGGTGAGCAAGATCAGAGACTT 58.828 45.455 0.00 0.00 0.00 3.01
322 323 2.760092 GAGGTGAGCAAGATCAGAGACT 59.240 50.000 0.00 0.00 0.00 3.24
323 324 2.159114 GGAGGTGAGCAAGATCAGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
324 325 2.106566 GGAGGTGAGCAAGATCAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
326 327 2.106566 GAGGAGGTGAGCAAGATCAGA 58.893 52.381 0.00 0.00 0.00 3.27
327 328 1.202394 CGAGGAGGTGAGCAAGATCAG 60.202 57.143 0.00 0.00 0.00 2.90
329 330 0.103937 CCGAGGAGGTGAGCAAGATC 59.896 60.000 0.00 0.00 34.51 2.75
331 332 1.984570 CCCGAGGAGGTGAGCAAGA 60.985 63.158 0.00 0.00 38.74 3.02
332 333 2.581354 CCCGAGGAGGTGAGCAAG 59.419 66.667 0.00 0.00 38.74 4.01
333 334 2.449967 TACCCCGAGGAGGTGAGCAA 62.450 60.000 11.08 0.00 38.36 3.91
334 335 2.926326 TACCCCGAGGAGGTGAGCA 61.926 63.158 11.08 0.00 38.36 4.26
335 336 2.043248 TACCCCGAGGAGGTGAGC 60.043 66.667 11.08 0.00 38.36 4.26
336 337 1.757340 GGTACCCCGAGGAGGTGAG 60.757 68.421 0.00 0.00 38.36 3.51
339 340 0.178882 AAAAGGTACCCCGAGGAGGT 60.179 55.000 8.74 7.32 41.64 3.85
340 341 0.252197 CAAAAGGTACCCCGAGGAGG 59.748 60.000 8.74 0.00 40.63 4.30
342 343 1.961133 ATCAAAAGGTACCCCGAGGA 58.039 50.000 8.74 0.53 36.73 3.71
343 344 2.026636 TGAATCAAAAGGTACCCCGAGG 60.027 50.000 8.74 0.00 40.04 4.63
345 346 2.290450 GGTGAATCAAAAGGTACCCCGA 60.290 50.000 8.74 0.03 35.12 5.14
346 347 2.089201 GGTGAATCAAAAGGTACCCCG 58.911 52.381 8.74 0.00 35.12 5.73
349 350 6.017357 GGAATATCGGTGAATCAAAAGGTACC 60.017 42.308 2.73 2.73 0.00 3.34
350 351 6.017357 GGGAATATCGGTGAATCAAAAGGTAC 60.017 42.308 0.00 0.00 0.00 3.34
351 352 6.059484 GGGAATATCGGTGAATCAAAAGGTA 58.941 40.000 0.00 0.00 0.00 3.08
352 353 4.887655 GGGAATATCGGTGAATCAAAAGGT 59.112 41.667 0.00 0.00 0.00 3.50
353 354 5.133221 AGGGAATATCGGTGAATCAAAAGG 58.867 41.667 0.00 0.00 0.00 3.11
354 355 6.238759 GGAAGGGAATATCGGTGAATCAAAAG 60.239 42.308 0.00 0.00 0.00 2.27
355 356 5.592688 GGAAGGGAATATCGGTGAATCAAAA 59.407 40.000 0.00 0.00 0.00 2.44
356 357 5.104109 AGGAAGGGAATATCGGTGAATCAAA 60.104 40.000 0.00 0.00 0.00 2.69
357 358 4.412199 AGGAAGGGAATATCGGTGAATCAA 59.588 41.667 0.00 0.00 0.00 2.57
358 359 3.973973 AGGAAGGGAATATCGGTGAATCA 59.026 43.478 0.00 0.00 0.00 2.57
360 361 5.388599 AAAGGAAGGGAATATCGGTGAAT 57.611 39.130 0.00 0.00 0.00 2.57
361 362 4.855298 AAAGGAAGGGAATATCGGTGAA 57.145 40.909 0.00 0.00 0.00 3.18
362 363 4.226394 TGAAAAGGAAGGGAATATCGGTGA 59.774 41.667 0.00 0.00 0.00 4.02
363 364 4.523083 TGAAAAGGAAGGGAATATCGGTG 58.477 43.478 0.00 0.00 0.00 4.94
364 365 4.781934 CTGAAAAGGAAGGGAATATCGGT 58.218 43.478 0.00 0.00 0.00 4.69
366 367 3.248602 CGCTGAAAAGGAAGGGAATATCG 59.751 47.826 0.00 0.00 0.00 2.92
367 368 3.003793 GCGCTGAAAAGGAAGGGAATATC 59.996 47.826 0.00 0.00 0.00 1.63
368 369 2.952310 GCGCTGAAAAGGAAGGGAATAT 59.048 45.455 0.00 0.00 0.00 1.28
369 370 2.290641 TGCGCTGAAAAGGAAGGGAATA 60.291 45.455 9.73 0.00 0.00 1.75
370 371 1.177401 GCGCTGAAAAGGAAGGGAAT 58.823 50.000 0.00 0.00 0.00 3.01
371 372 0.179004 TGCGCTGAAAAGGAAGGGAA 60.179 50.000 9.73 0.00 0.00 3.97
372 373 0.179004 TTGCGCTGAAAAGGAAGGGA 60.179 50.000 9.73 0.00 0.00 4.20
373 374 0.673437 TTTGCGCTGAAAAGGAAGGG 59.327 50.000 9.73 0.00 0.00 3.95
374 375 1.770957 GTTTGCGCTGAAAAGGAAGG 58.229 50.000 9.73 0.00 0.00 3.46
375 376 1.398595 CGTTTGCGCTGAAAAGGAAG 58.601 50.000 9.73 0.00 0.00 3.46
388 389 1.780860 GAAATCTGTGTGTGCGTTTGC 59.219 47.619 0.00 0.00 43.20 3.68
389 390 2.384382 GGAAATCTGTGTGTGCGTTTG 58.616 47.619 0.00 0.00 0.00 2.93
390 391 1.002900 CGGAAATCTGTGTGTGCGTTT 60.003 47.619 0.00 0.00 0.00 3.60
392 393 0.249699 TCGGAAATCTGTGTGTGCGT 60.250 50.000 0.00 0.00 0.00 5.24
393 394 0.439985 CTCGGAAATCTGTGTGTGCG 59.560 55.000 0.00 0.00 0.00 5.34
394 395 1.512926 ACTCGGAAATCTGTGTGTGC 58.487 50.000 0.00 0.00 0.00 4.57
395 396 3.185188 CAGAACTCGGAAATCTGTGTGTG 59.815 47.826 10.15 0.00 36.64 3.82
396 397 3.069586 TCAGAACTCGGAAATCTGTGTGT 59.930 43.478 15.35 0.00 41.04 3.72
397 398 3.430218 GTCAGAACTCGGAAATCTGTGTG 59.570 47.826 15.35 0.00 41.04 3.82
400 401 2.632996 TGGTCAGAACTCGGAAATCTGT 59.367 45.455 15.35 0.00 41.04 3.41
401 402 3.319137 TGGTCAGAACTCGGAAATCTG 57.681 47.619 11.52 11.52 41.49 2.90
402 403 3.515502 TCATGGTCAGAACTCGGAAATCT 59.484 43.478 0.00 0.00 0.00 2.40
403 404 3.861840 TCATGGTCAGAACTCGGAAATC 58.138 45.455 0.00 0.00 0.00 2.17
404 405 3.981071 TCATGGTCAGAACTCGGAAAT 57.019 42.857 0.00 0.00 0.00 2.17
405 406 3.762407 TTCATGGTCAGAACTCGGAAA 57.238 42.857 0.00 0.00 0.00 3.13
408 409 2.555199 GGATTCATGGTCAGAACTCGG 58.445 52.381 0.00 0.00 0.00 4.63
409 410 2.169352 AGGGATTCATGGTCAGAACTCG 59.831 50.000 0.00 0.00 0.00 4.18
410 411 3.198635 TGAGGGATTCATGGTCAGAACTC 59.801 47.826 0.00 0.00 0.00 3.01
412 413 3.634397 TGAGGGATTCATGGTCAGAAC 57.366 47.619 0.00 0.00 0.00 3.01
413 414 3.308402 GGTTGAGGGATTCATGGTCAGAA 60.308 47.826 0.00 0.00 35.27 3.02
416 417 1.284785 GGGTTGAGGGATTCATGGTCA 59.715 52.381 0.00 0.00 35.27 4.02
417 418 1.410224 GGGGTTGAGGGATTCATGGTC 60.410 57.143 0.00 0.00 35.27 4.02
419 420 0.630673 TGGGGTTGAGGGATTCATGG 59.369 55.000 0.00 0.00 35.27 3.66
421 422 1.143684 CGATGGGGTTGAGGGATTCAT 59.856 52.381 0.00 0.00 35.27 2.57
422 423 0.546122 CGATGGGGTTGAGGGATTCA 59.454 55.000 0.00 0.00 0.00 2.57
423 424 0.179018 CCGATGGGGTTGAGGGATTC 60.179 60.000 0.00 0.00 0.00 2.52
424 425 0.623324 TCCGATGGGGTTGAGGGATT 60.623 55.000 0.00 0.00 37.00 3.01
425 426 0.401979 ATCCGATGGGGTTGAGGGAT 60.402 55.000 0.00 0.00 37.00 3.85
426 427 1.004230 ATCCGATGGGGTTGAGGGA 59.996 57.895 0.00 0.00 37.00 4.20
427 428 1.056700 AGATCCGATGGGGTTGAGGG 61.057 60.000 0.00 0.00 37.00 4.30
428 429 0.839946 AAGATCCGATGGGGTTGAGG 59.160 55.000 0.00 0.00 37.00 3.86
430 431 0.837272 GGAAGATCCGATGGGGTTGA 59.163 55.000 0.00 0.00 37.00 3.18
434 435 0.398318 GAAGGGAAGATCCGATGGGG 59.602 60.000 0.00 0.00 37.43 4.96
436 437 1.346068 GAGGAAGGGAAGATCCGATGG 59.654 57.143 0.00 0.00 40.78 3.51
437 438 1.346068 GGAGGAAGGGAAGATCCGATG 59.654 57.143 0.00 0.00 40.78 3.84
439 440 0.398664 GGGAGGAAGGGAAGATCCGA 60.399 60.000 0.00 0.00 40.78 4.55
440 441 1.411651 GGGGAGGAAGGGAAGATCCG 61.412 65.000 0.00 0.00 40.78 4.18
442 443 0.398664 TCGGGGAGGAAGGGAAGATC 60.399 60.000 0.00 0.00 0.00 2.75
443 444 0.044244 TTCGGGGAGGAAGGGAAGAT 59.956 55.000 0.00 0.00 0.00 2.40
444 445 0.617820 CTTCGGGGAGGAAGGGAAGA 60.618 60.000 0.00 0.00 39.76 2.87
445 446 1.908483 CTTCGGGGAGGAAGGGAAG 59.092 63.158 0.00 0.00 39.76 3.46
447 448 2.687566 GCTTCGGGGAGGAAGGGA 60.688 66.667 4.67 0.00 42.88 4.20
448 449 4.162690 CGCTTCGGGGAGGAAGGG 62.163 72.222 5.22 5.22 46.16 3.95
450 451 0.530870 GATTCGCTTCGGGGAGGAAG 60.531 60.000 0.00 0.00 44.92 3.46
451 452 1.261938 TGATTCGCTTCGGGGAGGAA 61.262 55.000 0.00 0.00 38.15 3.36
452 453 1.684391 TGATTCGCTTCGGGGAGGA 60.684 57.895 0.00 0.00 38.15 3.71
454 455 0.108138 AAGTGATTCGCTTCGGGGAG 60.108 55.000 6.65 0.00 38.15 4.30
455 456 0.108329 GAAGTGATTCGCTTCGGGGA 60.108 55.000 20.74 0.00 40.37 4.81
456 457 2.384203 GAAGTGATTCGCTTCGGGG 58.616 57.895 20.74 0.00 40.37 5.73
460 461 2.699954 TCAAGGGAAGTGATTCGCTTC 58.300 47.619 25.15 25.15 46.84 3.86
464 465 4.333926 GGAAAGATCAAGGGAAGTGATTCG 59.666 45.833 0.00 0.00 35.84 3.34
465 466 5.504853 AGGAAAGATCAAGGGAAGTGATTC 58.495 41.667 0.00 0.00 35.84 2.52
466 467 5.527026 AGGAAAGATCAAGGGAAGTGATT 57.473 39.130 0.00 0.00 35.84 2.57
467 468 5.252630 AGAAGGAAAGATCAAGGGAAGTGAT 59.747 40.000 0.00 0.00 38.44 3.06
468 469 4.599241 AGAAGGAAAGATCAAGGGAAGTGA 59.401 41.667 0.00 0.00 0.00 3.41
472 473 5.850046 AAGAGAAGGAAAGATCAAGGGAA 57.150 39.130 0.00 0.00 0.00 3.97
473 474 5.850046 AAAGAGAAGGAAAGATCAAGGGA 57.150 39.130 0.00 0.00 0.00 4.20
474 475 6.685657 CAAAAAGAGAAGGAAAGATCAAGGG 58.314 40.000 0.00 0.00 0.00 3.95
475 476 6.155136 GCAAAAAGAGAAGGAAAGATCAAGG 58.845 40.000 0.00 0.00 0.00 3.61
478 479 5.388654 AGGCAAAAAGAGAAGGAAAGATCA 58.611 37.500 0.00 0.00 0.00 2.92
479 480 5.474876 TGAGGCAAAAAGAGAAGGAAAGATC 59.525 40.000 0.00 0.00 0.00 2.75
480 481 5.388654 TGAGGCAAAAAGAGAAGGAAAGAT 58.611 37.500 0.00 0.00 0.00 2.40
481 482 4.792068 TGAGGCAAAAAGAGAAGGAAAGA 58.208 39.130 0.00 0.00 0.00 2.52
482 483 5.300286 TCTTGAGGCAAAAAGAGAAGGAAAG 59.700 40.000 0.00 0.00 0.00 2.62
485 486 4.437682 TCTTGAGGCAAAAAGAGAAGGA 57.562 40.909 0.00 0.00 0.00 3.36
486 487 5.008980 AGATCTTGAGGCAAAAAGAGAAGG 58.991 41.667 0.00 0.00 35.95 3.46
487 488 5.939296 AGAGATCTTGAGGCAAAAAGAGAAG 59.061 40.000 0.00 0.00 35.95 2.85
488 489 5.874093 AGAGATCTTGAGGCAAAAAGAGAA 58.126 37.500 0.00 0.00 35.95 2.87
490 491 5.122082 GTGAGAGATCTTGAGGCAAAAAGAG 59.878 44.000 0.00 0.00 35.95 2.85
491 492 4.999950 GTGAGAGATCTTGAGGCAAAAAGA 59.000 41.667 0.00 0.01 36.87 2.52
493 494 4.978099 AGTGAGAGATCTTGAGGCAAAAA 58.022 39.130 0.00 0.00 0.00 1.94
495 496 3.055530 GGAGTGAGAGATCTTGAGGCAAA 60.056 47.826 0.00 0.00 0.00 3.68
496 497 2.499289 GGAGTGAGAGATCTTGAGGCAA 59.501 50.000 0.00 0.00 0.00 4.52
497 498 2.106566 GGAGTGAGAGATCTTGAGGCA 58.893 52.381 0.00 0.00 0.00 4.75
498 499 1.066908 CGGAGTGAGAGATCTTGAGGC 59.933 57.143 0.00 0.00 0.00 4.70
499 500 1.680735 CCGGAGTGAGAGATCTTGAGG 59.319 57.143 0.00 0.00 0.00 3.86
500 501 1.680735 CCCGGAGTGAGAGATCTTGAG 59.319 57.143 0.73 0.00 0.00 3.02
501 502 1.285078 TCCCGGAGTGAGAGATCTTGA 59.715 52.381 0.73 0.00 0.00 3.02
502 503 1.769026 TCCCGGAGTGAGAGATCTTG 58.231 55.000 0.73 0.00 0.00 3.02
504 505 1.544537 CGATCCCGGAGTGAGAGATCT 60.545 57.143 0.73 0.00 32.87 2.75
505 506 0.878416 CGATCCCGGAGTGAGAGATC 59.122 60.000 0.73 3.56 0.00 2.75
506 507 3.028916 CGATCCCGGAGTGAGAGAT 57.971 57.895 0.73 0.00 0.00 2.75
533 534 4.057428 CGATCGCCGGGGAGATCC 62.057 72.222 26.38 13.75 44.72 3.36
550 551 3.749064 TCGTGGCGACTCTGAGGC 61.749 66.667 9.85 4.77 0.00 4.70
562 563 1.672854 TATCGGAAGCCCTGTCGTGG 61.673 60.000 0.00 0.00 0.00 4.94
563 564 0.174845 TTATCGGAAGCCCTGTCGTG 59.825 55.000 0.00 0.00 0.00 4.35
564 565 0.175073 GTTATCGGAAGCCCTGTCGT 59.825 55.000 0.00 0.00 0.00 4.34
565 566 0.529992 GGTTATCGGAAGCCCTGTCG 60.530 60.000 0.00 0.00 0.00 4.35
566 567 0.539986 TGGTTATCGGAAGCCCTGTC 59.460 55.000 0.00 0.00 0.00 3.51
568 569 0.810031 CGTGGTTATCGGAAGCCCTG 60.810 60.000 0.00 0.00 0.00 4.45
569 570 1.520666 CGTGGTTATCGGAAGCCCT 59.479 57.895 0.00 0.00 0.00 5.19
570 571 2.178235 GCGTGGTTATCGGAAGCCC 61.178 63.158 0.00 0.00 0.00 5.19
571 572 1.152383 GAGCGTGGTTATCGGAAGCC 61.152 60.000 0.00 0.00 0.00 4.35
572 573 1.480219 CGAGCGTGGTTATCGGAAGC 61.480 60.000 0.00 0.00 32.93 3.86
573 574 1.480219 GCGAGCGTGGTTATCGGAAG 61.480 60.000 0.00 0.00 36.96 3.46
575 576 2.103538 GCGAGCGTGGTTATCGGA 59.896 61.111 0.00 0.00 36.96 4.55
576 577 2.960129 GGCGAGCGTGGTTATCGG 60.960 66.667 0.00 0.00 36.96 4.18
577 578 1.591594 ATGGCGAGCGTGGTTATCG 60.592 57.895 0.00 0.00 39.40 2.92
578 579 1.934463 CATGGCGAGCGTGGTTATC 59.066 57.895 0.00 0.00 0.00 1.75
579 580 2.180204 GCATGGCGAGCGTGGTTAT 61.180 57.895 0.00 0.00 0.00 1.89
580 581 2.817834 GCATGGCGAGCGTGGTTA 60.818 61.111 0.00 0.00 0.00 2.85
596 597 4.681483 GTCAATTTTTCTTAGTGCAGTGGC 59.319 41.667 3.69 0.00 41.68 5.01
597 598 6.076981 AGTCAATTTTTCTTAGTGCAGTGG 57.923 37.500 3.69 0.00 0.00 4.00
598 599 7.992180 AAAGTCAATTTTTCTTAGTGCAGTG 57.008 32.000 3.69 0.00 0.00 3.66
602 603 9.797473 GCATAAAAAGTCAATTTTTCTTAGTGC 57.203 29.630 0.00 1.28 45.87 4.40
609 610 9.396938 CCCAAATGCATAAAAAGTCAATTTTTC 57.603 29.630 0.00 0.00 45.87 2.29
617 618 4.627035 GTGCTCCCAAATGCATAAAAAGTC 59.373 41.667 0.00 0.00 41.45 3.01
626 627 2.300956 TTAAGGTGCTCCCAAATGCA 57.699 45.000 0.00 0.00 36.79 3.96
776 783 9.979578 TGTAATTCGTTAGGACTACTTGTTTTA 57.020 29.630 0.00 0.00 0.00 1.52
814 821 4.513692 CACAATCCAAGTCCTCGTGTTAAA 59.486 41.667 0.00 0.00 0.00 1.52
832 839 2.156917 CACCTCTCATGCACACACAAT 58.843 47.619 0.00 0.00 0.00 2.71
835 842 0.870393 CACACCTCTCATGCACACAC 59.130 55.000 0.00 0.00 0.00 3.82
842 850 3.006217 TGACAGAGTTCACACCTCTCATG 59.994 47.826 0.00 0.00 37.18 3.07
843 851 3.234353 TGACAGAGTTCACACCTCTCAT 58.766 45.455 0.00 0.00 37.18 2.90
881 890 2.666190 CACCACCAGCACGACCTG 60.666 66.667 0.00 0.00 0.00 4.00
882 891 3.161450 ACACCACCAGCACGACCT 61.161 61.111 0.00 0.00 0.00 3.85
981 998 3.253188 CCATCGTGCTTTCCTTTTCTTCA 59.747 43.478 0.00 0.00 0.00 3.02
1033 1062 2.123077 CGGGAGGGAGCAGAGGAT 60.123 66.667 0.00 0.00 0.00 3.24
1154 1189 5.673337 TCGGTGTGAAGAAGAAAATTGAG 57.327 39.130 0.00 0.00 0.00 3.02
1216 1285 5.163992 GCAACGACAATCGAGTAATCAGAAA 60.164 40.000 5.04 0.00 43.74 2.52
1225 3123 1.617755 CTGCGCAACGACAATCGAGT 61.618 55.000 13.05 0.00 43.74 4.18
1226 3124 1.057822 CTGCGCAACGACAATCGAG 59.942 57.895 13.05 0.00 43.74 4.04
1565 3620 3.550275 GCGGTTGGTGAAAAGAAAGAAAC 59.450 43.478 0.00 0.00 0.00 2.78
1664 3733 1.079543 CCAGCTCGAGACAACTGGG 60.080 63.158 22.36 9.27 44.90 4.45
1696 3767 1.795872 CGTTGACAACCGTGAGCATAA 59.204 47.619 12.66 0.00 0.00 1.90
1699 3770 2.530497 GCGTTGACAACCGTGAGCA 61.530 57.895 12.66 0.00 0.00 4.26
1707 3778 0.661187 CCTGCACATGCGTTGACAAC 60.661 55.000 8.34 8.34 45.83 3.32
2334 4425 8.267183 TGGTTGCTACTGTACATACTAGTAGTA 58.733 37.037 12.38 12.38 43.54 1.82
2335 4426 7.114754 TGGTTGCTACTGTACATACTAGTAGT 58.885 38.462 16.29 8.14 43.54 2.73
2336 4427 7.563888 TGGTTGCTACTGTACATACTAGTAG 57.436 40.000 8.85 12.57 44.14 2.57
2430 4521 3.981071 TCCACGGATGAGAAAAGTCAT 57.019 42.857 0.00 0.00 40.00 3.06
2510 4601 1.459592 CCGTTTGTCAGGCGAGTAAAG 59.540 52.381 0.00 0.00 0.00 1.85
2530 4621 0.801836 CGGCGCCCATGAATGAAAAC 60.802 55.000 23.46 0.00 0.00 2.43
2571 4663 4.939368 TCGCCACCAACCAACCCG 62.939 66.667 0.00 0.00 0.00 5.28
2593 4685 8.176814 CGACTAGTTTCGTCCAACAAATTATA 57.823 34.615 0.00 0.00 34.16 0.98
2630 4734 1.344438 ACCAGCTCGTTCAGTGAATCA 59.656 47.619 9.18 0.00 0.00 2.57
2684 4825 1.732809 CTGTTCTCAGCTCAGTGCATG 59.267 52.381 0.00 0.00 45.94 4.06
2700 4841 0.814010 GCACCGAGTCACCAACTGTT 60.814 55.000 0.00 0.00 38.74 3.16
2724 4964 0.898320 ACTGATGAGTGGCTAACGCT 59.102 50.000 0.00 0.00 44.13 5.07
2725 4965 1.002366 CACTGATGAGTGGCTAACGC 58.998 55.000 4.13 0.00 45.26 4.84
2781 5023 5.292834 GCCATCATTATCATCATACCGTGAG 59.707 44.000 0.00 0.00 40.92 3.51
2782 5024 5.178061 GCCATCATTATCATCATACCGTGA 58.822 41.667 0.00 0.00 42.06 4.35
2830 5092 1.539388 ACACAACATACACATTGGCCG 59.461 47.619 0.00 0.00 0.00 6.13
2838 5100 0.596082 GGCCACCACACAACATACAC 59.404 55.000 0.00 0.00 0.00 2.90
2843 5105 4.116585 ACCGGCCACCACACAACA 62.117 61.111 0.00 0.00 0.00 3.33
2844 5106 3.591835 CACCGGCCACCACACAAC 61.592 66.667 0.00 0.00 0.00 3.32
2845 5107 2.838748 TTTCACCGGCCACCACACAA 62.839 55.000 0.00 0.00 0.00 3.33
2846 5108 3.345607 TTTCACCGGCCACCACACA 62.346 57.895 0.00 0.00 0.00 3.72
2848 5110 2.203280 CTTTCACCGGCCACCACA 60.203 61.111 0.00 0.00 0.00 4.17
2937 5206 3.980646 TGCATGGATAATTTACACGGC 57.019 42.857 0.00 0.00 0.00 5.68
2972 5241 4.687215 TCACCTCTGTGCCTGCGC 62.687 66.667 0.00 0.00 42.46 6.09
2974 5243 2.740055 CGTCACCTCTGTGCCTGC 60.740 66.667 0.00 0.00 42.46 4.85
2976 5245 3.233980 TGCGTCACCTCTGTGCCT 61.234 61.111 0.00 0.00 42.46 4.75
2984 5272 2.916502 TTTGCTCGTGTGCGTCACCT 62.917 55.000 7.38 0.00 43.51 4.00
3018 5306 6.495181 ACATATCTACATGGAGTTCAGGGTAG 59.505 42.308 4.45 6.68 37.97 3.18
3062 5350 0.391130 TTGTGCTCGCGATTTAGCCT 60.391 50.000 10.36 0.00 37.97 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.