>input_sequence_60363
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--------------------------------------------------------ATGGACGT---------ATCCATC
CTTCTGCTCCCG---CTCCTCATC------CTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCTACGCGCACCG
CTCCAGAGCCGCCTACTACACCTCCTCGCTCACCCTCGCCGGTACGTGCCCGCGTGCCCATCGATCGACTCAATTTTCTT
CTTCACACCGATCGATCGATCGATTCATGCAACTGCATACATATGCT---------------------------------
-CTGTTT-------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTACTCGAT-------TGTCGTTGC--GCAGCCGGTTCCTGCGGGTACGGCACAGCGGCCGCGTCCCTCAACGGCGGCCT
GCTCGCCGCGGCGGGCCCGGCCCTGTACAGGCAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGACGAAGAGCTCTGCGGCACCGCC
GGCGTGAGGGTCGTCGTCACGGACCGCGCGAGGACGAAGGAGAACGGCACGGACCTCGTGCTCAGCGGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCCGCGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCAACG
C-C----CCCCTCTCTGTTGTTTCTTTCTTTTCACCAACCGCGCGC------ACGGCGCACGCGCCATGTGCGGCATAAG
AACAAAAACAGCGC--------CATGCCTGCAATCATCAATACATCTACGACCCCAGTTGTCTCGA-GCTGGTAGAATTT
GGA-AGTTATGCTCACGG-TTGTCAACGC--------ATGTGCAGGGTGCCGTGCGAGTACAAGGGCAAGAACCTCTCGC
TGCGGGTGGAGCAGAGGAGCCGCGCGCCGAACGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACCGACATCGTC
GCCGTCGACGTCGCGCAGGTCGGATCGTCGTCGAGCTGGAGGTCCCTGACGCGTGACCACGGGCCGACGTGGAGCACGAG
CCTGGCGCCGCCGGGGCCGCTGCAGCTCAGGGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACCGGG
AGGTCCTGCCGCGCCAGTGGCGCGCCGGCGAGGTCTACGACACCGGCGTGCAGATCACCGACATCGCCCAAGAAGCCTGC
TTCCCCTGCGACACGCAGGAGTGGAGGTGA--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>chr4B_1_TraesCS4B01G327200
GCTCGCCATGACAGGGGGCTCGACGATGGTAGATGGGAGTGGTGAAACTTGTGGCTCTCCCCTCCCCTCTCTCTGGTTCT
TTATACACCCAGGATCCAACTTCTCCTCCGGCAAACCATCCACAGGCATTGATACTCTCTGATTTCTTGGCTCTGATTGC
ACATACAGATCTCCAAGACTTGGGCGCATACCACCCCCTTTGTCTGGTGGGTCGGCATGTTTGAGATCTCCACCAAGCCT
TTCCTTTGCGTCTAGATCTCTTTCACAAAATCTATTCCCCCAATCTCCCCTCATTTGATTTACCTTGCCCCTGATCCTCT
CAAGTCTCTGATCTTGCTCACCTCCTCGGGGTACCTTTTGATTCACCGATATTCCCTTCCTTTTCAGCGCAAACGCACAC
ACAGATTTCCGAGTTCTGACCATGAATCCCTCAACCCCATCGGATCTTCCCTTCCTCCCCGAAGCGAATCACTTCCCTTG
ATCTTTCCTTCTCTTTTTGCCTCAAGATCTCTCACTCCGGGATCGGCCGGATCGGATCTCCCCGGCGATCGCCTCAGAGT
CGCCACGACAGGGCTTCCGATAACCACGCTCGCCATGCCACTGCACTAAGAAAAATTGACTTTTTATGCATTTGGGAGCA
CCTTAATATTT--TTTCCCTGTCTCAAAGCTCCATGTTTTGCAGGGATTAGGTTCCTTTTAACAAAGT---AGTACTCCC
TGTGTGCC-AAAAAACGTCTTATATAAAGTTGGGCTGTACTACTAACGAGCCCTAACAAAACTAAAACAAGTAGTCCTAA
CGAATTACAGTTAAGTCAGTTTTAACACGAGGACTTGGATTGT-GTGTGCATGAGAGGTGTGAACTCTGTCA-TTTCTGT
GTACCGTGACAG-----GTCGTGCTGGTGGTGTGGTGTATATAAGGCGTCGTCGGGCACAAGGATCCTCCTCT---GTCT
CTGAGCTTCTCTCAACTTGAAGCCACTTGCTCTGCTCTGAAGAAAAGGAAAGCACGATGGACGT---------ATCCATC
CTTCTGCTCCCG---CTCCTCATC------CTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCTACGCGCACCG
CTCCAGAGCCGCCTACTACACCTCCTCGCTCACCCTCGCCGGTACGTGCCCGCGTGCCCATCGATCGACTCAATTTTCTT
CTTCACACCGATCGATCGATCGATTCATGCAACTGCATACATATGCT---------------------------------
-CTGTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTACTCGAT-------TGTCGTTGC--GCAGCCGGTTCCTGCGGGTACGGCACAGCGGCCGCGTCCCTCAACGGCGGCCT
GCTCGCCGCGGCGGGCCCGGCCCTGTACAGGCAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGACGAAGAGCTCTGCGGCACCGCC
GGCGTGAGGGTCGTCGTCACGGACCGCGCGAGGACGAAGGAGAACGGCACGGACCTCGTGCTCAGCGGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCCGCGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCAACG
C-C----CCCCTCTCTGTTGTTTCTTTCTTTTCACCAACCGCGCGC------ACGGCGCACGCGCCATGTGCGGCATAAG
AACAAAAACAGCGC--------CATGCCTGCAATCATCAATACATCTACGACCCCAGTTGTCTCGA-GCTGGTAGAATTT
GGA-AGTTATGCTCACGG-TTGTCAACGC--------ATGTGCAGGGTGCCGTGCGAGTACAAGGGCAAGAACCTCTCGC
TGCGGGTGGAGCAGAGGAGCCGCGCGCCGAACGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACCGACATCGTC
GCCGTCGACGTCGCGCAGGTCGGATCGTCGTCGAGCTGGAGGTCCCTGACGCGTGACCACGGGCCGACGTGGAGCACGAG
CCTGGCGCCGCCGGGGCCGCTGCAGCTCAGGGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACCGGG
AGGTCCTGCCGCGCCAGTGGCGCGCCGGCGAGGTCTACGACACCGGCGTGCAGATCACCGACATCGCCCAAGAAGCCTGC
TTCCCCTGCGACACGCAGGAGTGGAGGTGACCGCCGACGA-------GG----CAAGCCAAGAGGAAGAGCTAAGCTCCA
AAATCGTGGCTGGGCGTCGAACGAACGGTCAGAGGCTCCTCGTCACTGCCGCTGGAAATTTCGGCTGGGCATGGAATTGG
AAGGATAGATAGAGATTAGTAACTGACGCAGGGGCACGTAGAGCCCTCGTTGCTTATCCAACTCTTGTGGACAAACTTGC
ATGAGCTGCAGCTGACGTGTGAGATACTACTAGTATGTACAGTAGCAACCATGAAGCGATAATGGGTAGCGGATGGCGGC
GAGGCCGTGGCCTGAATCCCCGGACAAAATACAAAGTCCGATGACTTTTCTCATCCGTGGATAACGTCGCAAGTCGCTGT
GGCGCAGGATTCATGCTCCGTTGCTTTCGGCGACGATGTTCTTTACTCGCCTGACAAACGG-TTTTCATTCATGGGCGCC
GAGCTCGATCGTCCCGTTTGAACGGGTTGGTTGGTGGCGAGATTTATAATTTGTTGGACGA------------AACTAGT
CGTTGGTCTTCCATGATTCACTGAACGAGCTGGTCAGGAAATTAGGGT--------------------------------
-AAAGCAC----AATTCGGACATGCATGCACTGAGCTGAGAAC-------------------------------------
--------------------------------------------------------------AGTTGGTGACTCGGTGCG
CCAAG--CGTTAGCCACTCATCAGTGCAACTGCAACTGCAACCGCAACCATCTACTCCTCTCCTCACGGT----------
-------ATGATGATAATGATGGCCAGTGGAACTAGTAGTGTATG---TACCGGCCAATGTGTATGTTGT-------GTG
GTGGCCGGTGAAAGCCGGCCGAGATTCTCGCGGAGTGCACTGTACGTCTGTCCGCCACCACCCACACCAGGGGCGGCGCC
GTCGCGCCGTGTAAATTATCCATGCAATCTGTCGAACACGGCGCAG-------------------GCACAGAGGTGACGC
ACACGAGCAAAACGTGCGTGTCCATCTACCCTGAACTCCATGTAGATATGTCCGCAAATCTGCATCCTGAGGCTAAATCG
CGAGCACAAATGCTGGAATAGCTGGTGTAGTTAACTGG
>chr4D_612
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------AAAATTCACTTTTTAGGCATTTGGGAGCA
CCTTAATATTTTTTTTCCCTGTCTCAAAGCTCCCTGTTTTGCAGGGATTAGGTTCTTTTTAACAAAGT---AGTACTCCC
TGTGTGCC-AAAAAACGTCTTATATAAAGTTGGGCTGTACTACTAACGACCCCTAACAAAACCAAAACAAGTAGTCCTAA
CAAATTACAGTTAAGTCAGTGTTAACACGAGGACTGTGGTTCTAGTGTGTGTGAGAGTTGTGAACTCTGTCAGTTTCTGT
GTACCGTGAGTGGGGTTGTCGTGCTGGTGGTGTGGTGTATATAAGCCGTCGTCAGGCACAAGGATCCTCCTCCTCCGTCT
CTCATCTTCTCTCAACTTGAAGCCACTTGCTCTGCTCGGAAGAAAAGGAAAGCAAGATGGACGTCTCTCCCTCATCCATT
CTTCTGCTCCCG---CTCCTCTTCCTCTTCCTCTGCTCCCTCCCGTCGCCCGCCTCCGCCTGCGACCGCTGCGCTCACCG
CTCCACAGCCGCCTACTACACCTCCTCGCTCACCCTCGCCGGTACGTGCCCGCGCGCCCATCGATCGATTCAGTTTTCTT
CTTCACACCGATGGATCGATTGATTCATACAACTGCATATAG-TACT---------------------------------
-ATGATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTGTTCGAT-------TGTCTTGTTCTGCAGCCGGTTCCTGCGGGTACGGCGCGGCGGCCGCGTCCCTCAACGGCGGCCT
GCTCGCCGCGGCGGGCCCGGCCCTGTACAGGCAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGACGAGGAGCTCTGCGGCGCCGCC
GGCGTGAGGGTCGTCGTCACGGACCGCGCGAGGACCAAGGAGAACGGCACGGACCTCGTGCTCAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCCGCGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCGTCG
CGC----CCCTCTCGTTTTCTC-------TTTCACCAACCGCGCGCACGGGTACGGCGCACGCGCCATGTGCGGCATAAG
AACAAAAATAGCGC--------CGGCCGAGCATGCCTGGCCTAGTACAGGACTCCAGTTGTCTCGAAGCTGTTAGAATTT
GGA-AGCTAGGCTCACGA-TTGTCAACGC--------ATGTGCAGGGTGCCCTGCGAGTACAAGGGCAAGAACCTCTCGC
TGCGTGTGGAGCAGAGGAGCCGCGCGCCCAGCGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACTGACATCGTC
GCGGTCGACGTCGCGCAGGTCGGTGCGTCGTCGAGCTGGAGGTCCCTGACACGCGACCACGGGCCGGCGTGGAGCACGAG
CCTGGCGCCGCCGGGGCCGCTGCAGCTCCGGGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTCTGGGCCGATCGCG
AGGTCCTGCCGCGCCAGTGGCGCGCCGGCGAGGTCTACGACACCGGCGTCCAGACCACCGACATCGCCCAAGAAGCCTGC
TTCCCCTGCGACACGCAGGAGTGGAGGTGACCACCGACGAGGCAAGCGG----CAAGCCAAGAGGAGGAGCTAAGCTCCA
AAATCGTGGCCGGGCGTCGAACCAACGGTCAGAGGCTCCTCGTCACCGCTGGTGCCAGTTTCGGCTGGGCATGGAATTGG
AAGGATAGATAGAGATTAGTAACTGACGCAGCGGCACGTAGAGCCCTCGTTGCTTATCCAACTCCTGTGGACAAACATGC
ATGAGCTGCAGCTGACGTGTGAGA---TACTAGTATGTACAGTAGCAACCATGAAGCGATAACGGGTAGCGGACGGCGGC
GAGGCCGTGGCCTGAATCCCTGGACAAAATACAAAATCCGGTGACTTTTCTCA---GTGGGTAGCGTCGCAAGTCGCCGC
GCCGCAGGGTTCATGCTCCGTTGCTTTCGGCTCGA----------------TGGCAAACGA-TTTTCATTCATGGGCGCC
GAGCTCGACCGTTTGAATG---------GGTTGGTGGCGAGATTAATAATCTGTTGGACGACGGACGAAACGAAACTAGT
CGCTGGTCTTCCAGGATTCACTGAATGAGACGGTCAGGAAATTAAGGGCGTAGTGCAATACAATACTGTAATCAGGAGTA
GAAAGCACGTCGAATTCAGACATGTATGCACTGAGCTGAGCATACATGATTGGTGATTACTCCTTCGGTCTCATAATGCA
AGGCATTTTTTGACACTACACTAATGTTAAAAAAACATCTTACATTATAGGACGGAGGGAGTAGGTCGTAGCTGGGTGCG
CCATAAACGGCAGCCACTCATCATCAG---------TGCAACGGCAACCATCTACTCCTCCAGGCCTCACGAAACCATTG
CTTGTCAATGATGATAACGATGGTCAGTGGAGCTAGTTGTGTGTC---TACTGGCCAATATGCAG---------GTGGTG
CTGGCCGGTGAAAGCCGGCCGAGATTCTAGCGGAGTGCACTGTACGTCTGTCCGCCACCACTCACGCCGAC---------
------CCGTGTAAATTATCCATGCAATCTGTCGAACACA-----GTGCTCAAAATTCAGGCACAGCACAGGGGTGACGC
ACACGAGCAAAACGTGCGTGTCCATGTACCCTGAACTCCATGTAGATATGTCTGCAAATCTGCATCCTGCGGCTAAATCG
CGAGCAGAAATGCTGAAGTAGCTGGTGTAGTTA-----
>chr5A_635
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGACCA
CCTTAATA-TT--TTTCCCTGTCTCAAAGCTCCCTGTTTTGCAGGGATTAGGTTCCTTTTAACAAAGTGGTAGTACTCCC
TGTGTGTCAAAAAAACGTCTTATCTTAAGTTAGGCTGTACTACTAACGACCCCTAACAAAACCAAAACAAGTAGTCCTAA
CGAATTACAGTTAAGTCAGTGTTAACACGAGGACC---------GTGTGTGTGAGAGGTGTGAATTCTGTCAGTTTCTGT
GTACCGTGAGTGGGGTTGTCGTGCTGGTGGTGTGGTGTATATAAGCCGTCGTCAGGCACAAGGATCCTCCTCCACTGCCT
CTGAGCTTCTCTCAACTTGAAGCCACTTGCTCTGCTCGGAAGAAAAGGAAAGCAAGATGGACGTCTCTTCCTCATCCATC
CTTCTGCTCCCG---CTCCTCCTCCTCCTGCTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCTGCGCGCACCG
CTCCAGAGCCGCCTTCTACACCTCCTCGCTCACCCTCGCCGGTACGTGCCCGCGCGCCCATCGATCCATTCAGTTTTCTT
CTTCACACCGATCGATCGATCGATTCATGCAACTGCATATAG-TACT---------------------------------
-ATGATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TGGTTTGAT-------TGTCTTGATCTGCAGCCGGGTCCTGCGGGTACGGCGCGGCGGCCGCGTCCCTCAACGGCGGACT
GCTCGCCGCGGCGGGCCCGGCCCTGTACAGGCAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGGTGCAAGGACGGGGAGCTCTGCGGCACCGCC
GGCGTGAGGGTCGTCGTCACGGACCGCGCGAGGACCAAGGAGAACGGCACGGACCTCGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCTGGCATGGCCGGGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCAACG
C-CGGTCCCCCTCTCTGTTTTTTCTTTCTTTTCACCAACAGCGCGC------ACGGCGCACGCGCCATGTGCGGCATAAG
AACAAAAACAGCGCCGGCCGAGCATGCGTGCCATCATCAATACATCTACGACTCCAGTTGTCTCGA-GCTGGTAGAATTT
GGA-AGCTAGGCTCACGA-TTGTCAACGC--------ATGTGCAGGGTGCCGTGCGAGTACAAGGGCAAGAACCTCTCGC
TGCGGGTGGAGCAGAGGAGCCGCGCGCCGAGCGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACCGACATCGTC
GCCGTCGACGTCGCGCAGGTCGGTGCGTCGTCGAGCTGGAGGTCCCTGACGCGCGACCACGGGCCGGCATGGAGCACGAG
CCTGGCGCCGCCGGGGCCGCTGCGGCTCAGGGCGGTGGTGACCGGCGGATACGACGGCAAGTGGGTCTGGGCCGACCGGG
AGGTCCTGCCCCGCCACTGGCGCGCCGGCGAGGTCTACGACACCGGCGTGCAGATCACCGACATCGCGCAAGAAGCCTGC
TTCCCCTGCGACACGCAGGAGAGGAGGTGACTGGCGCCGAGGCAAGCAGACGACAAGCCAAGAGGAGGAGCTAAGCTCCA
AAATCGTGGCTGGGCATCGAACGAACGGTCAGAGGCTCCTCGTCACTGCCGCTGGAAATTTCGGCTGGGCTTGGAATTGG
AAG----GATAGAGATTAGTAACTGACGCAGCGGCACCTAGAGCCCTCGTTGCTTATCCAACTCTTGTGGACATACATGC
ATGAGCTGCAGCTGACGTGTGAGAG-----TAGTATGTACAGTAGCAACCATGAAGCGATAAATGAGTA---------GC
GAGGCCGTGGCCTGAATCCCCGGCCAAAATTCAAAATCCGGCGACTTTTCTCATCAGTGGATAACGTCGCGAGTCGCTGT
GGCGCAGGATTCATGCTCCGTTGCTTTCGGCGACGATGTTGTTTACTCGCCTGACAAACGATTTTTCATTCATGGGCGCC
GAGCTCGATCGTCCCGTTTGAATGGGTTGGTTGGTGGCGGGATTAATAATTTGTTGGACGACGGACGA-----AACTAGT
CGCCGGTCTTCCAGGATTCACTGAACGAACTGGTAAGGAAATTAGGGTAAT-------------------ATAATGATTG
GAAAGCAC----AATTCGGACATGTATGCACTGAGCTGAGCAC-------------------------------------
--------------------------------------------------------------AGTTGGTGACTCGGTGCG
CCATTAACGTTGGACACTCATCAGTGCAAGCGCAACTGCAACC------ATCTACTCCT-----CACGGT----------
-------ATGATGATAATGATGGCCAGTAGAACTAGTAGTGCATGTATTACGGGCCAATATGTAGTAGGAGTATGTGGTG
CTGGCCGGTGAAAGCCGGCCGAGATTCTCGCGGAGTGCACTGTACGTCTGTCCGCCACCACCCACACCAGGGGCGGCGCC
GTCGCACCGTGTAATTTATCCATGCAATCTGTCGAACACAACACTGTGCTCAAAATTCAGGCACA---------------
---CGATCAAAACGTGCGTG------------------------------------------------------------
--------------------------------------
>chr4D_1009
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------ATCCATC
CTTCTGCTGCCG---CTCCTCCTCCTCTTGCTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCTGCGCGCGCCA
CTCCAAGGCCGCCTACTACACCTCCTCGCTCACCCTCGCCGGTACGTGCCCTCATCCATGGATGATGGATCATG------
---------GATGGATCCC------------------TCCACCTGCTCTGTTT-------CTGTTTTCCT----------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CCTGTGTTGTGTGGG
TTGCAGAGCAGGTGGTTCTG------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------GGTTCTGA
TTGGGTTTGCCTTCTGCG--------TGCAGCCGGCTCTTGCGGGTATGGCACGGCGGCCGCCTCCTTCAACGGCGGCCT
GCTCGCCGCCGCCGGCCCGGCCCTGTACCGCGGCGGCGTCGGCTGCGGCGCCTGCTTCCAGGTAGCTACCAAGAAATCTT
GTGCCCAACGGCTTCGGCTTGTCTTCCTTCTGGATTCACTTGCTTCCTGATCATCGGCTTGCCCAAGAACCGGGCTATCT
CGATTCCTTGACTAATCAGGTCAGCTTCGGTGTGCCGATTGCAGGTGAGGTGCAAGGACAAGAAGCTCTGCAGCGGCGCC
GGCGCCAGGGTCGTCGTGACGGACCGCGCCAGGATGAAGACGAACCGCACGGACCTGGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGAATGGCCGCGCGCCTCACCAAGCTCCGCGCCGTCGACGTCGAGTACAAGAGGTAA-------
--------------------------------------------------------------------------------
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--------------------------------------
>chr4D_1011
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CCATC
CTTCTGCTCCCG---CTCCTCTTC------CTCTGCACCCTCCCGCCGCTCGCCTCCGCCTGCGACCGCTGCGTGCACCG
CACCAGAGCCGCCTACTACGCCTCCTCTCTCACCCTCGCCGGTACG----------------------------------
----------------------ATTCCTACATCTGGATACACATGCTTTG-------TTTCTACCTATACATGGCACATG
CATGATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
CTGTTCGAT-------TGTGGTGTCTTGCAGCCGGCTCCTGCCGGTACGGCGCGGCGGCCGCGTCCCTCAACGGCGACCT
GCTCGCCGGGGCGGGCCCGGCCCTGTACAGACAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGACGAGGAGCTCTGCGCTACCGCC
GGCGTGAAGGTCGTCGTCACCGACCGCGCCAGCACCAAGACGAACGACACCGACCTCGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCTGGGCGGCTCTCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTATTAACA--
--------------------------------------------------------------------------------
AACAAAAACAGCGCCCGCCGAGCATGCCTGCCGTCATAAATACATACACGATTCCATTTGTCTCGGAGCATCGAGGTTGG
GAACAGCTAGGCTCACGA-TTGTCAACGCTGCCGCGTATGTGCAGGGTGCCGTGCGTGTACGAGGGCAAGAACCTCTCGG
TGCGGGTGGAGGATCGGAGCCGCGCGCCCGGCGAGCTGGCCATCACGATCCTCTACCAGGGCGGACAGACCGACATCGTC
CAAGTCGACCTCGCGCAGGTCGGTTCATCGTCGAGCTGGACATCCCTGACACGCGACCACGGGTCGGCGTGGAGCACGAG
CCTGGCGCCGCCGGGGCCGCTGCAGCTCAGGGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTCTCGACCGATCGGG
AGGTCCTGCCGCGCCAGTGGCGCGCCGGCGAGGTCTACGACACCGGCGTCCAGATCACCGACATCGCCCAAGAAGACTGC
TTCCCCTGCGACACGCAGGAGTGGAAGTGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------
>chr5A_1012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------CATC
CTTCTGCTGCCGCTCCTCCTCTTC------CTCTGCACCCTCCCGCCGCTCACCTCCGCCTGCGACCGCTGCGTGCACCG
CACCAGAGCCGCCTACTACGCCTCGTCTCTCACCCTCGCCGGTACC----------------------------------
----------------------ATCCATACACCTGCATACATATGCTCTGTTTCTACTTTCTACCTATACATGGCCCATG
CATGATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTGTTCGAT-------TGTGGTGTCTTGCAGCCGGTTGCTGCGGGTACGGCGCGGCGGCCGCGTCCCTCAACGGCGACCT
GCTCGCCGGGGCCGGCCCGGCCCTGTACAGACAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGGTGCAAGGACGAGGAGCTCTGCGCTACCGCC
GGCGTGAAGGTCGTCGTCACCGACCGCGCCAGGACGAAGACGAACGACACCGACCTCGTGCTGAGCAGCCCGGCGTTCGC
TGCCATGGCCCGCCCCGGCATGGCTGGGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCAAAG
C-C----CCCTCTCATTT--------------------------------------------------------------
-------------------------------------------------------ATTTGTCTCGAAGCACGGAGATTGG
AAAGAGCTAAACTCAAGA-TTGTCAACGCTGCCGCGAATGTGCAGGGTGCCGTGCGTGTACGAGGGCAAGAACCTCTCGC
TGCGGGTGGATGAGCGGAGCCGCGCGCCCAGCGAGCTCGCCATCACGATCCTCTACCAGGGCGGCCAGACCGACATCGTC
GAGGTCGACGTCGCGCAGGTCGGTTCGTCGTCGAGCTGGACGTCCCTGACACGAGACCACGGGCCGGCGTGGAGCACGAG
CGAGGCGCCACCGGGGCCACTGCAGCTGAGGGCGGTGGTGACCAGCGGGTTCGACGGGGCATGGGTCTATGCCGAACATG
AAGTCCTGCCGAGCCAGTGGCACGCCGGCGAGGTCTACGACACCGGCGTCCAGATCACCGCCATCGCCCAAGAAGCCTGC
CTCCCCTGCGACACGCAGGAGTGGAAGTGACGCCTGACGA-------GG----CAAGC----------------------
--------------------------------------------------------------------------------
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--------------------------------------
>chr5A_1021
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----GCTCCCG---CTCCTCTTC------CTCTGCACCCTCCCGCCGCCCGCCTCCGCATGCGACCGCTGCATGCACCG
CACCAGAGCCGCCTGCTACGCCTCCTCTCTCACCCTCGCCGGTACGTA--------------------------------
--------------------CGATTCATATACCTGCATACACATGCTCTGTTT-------CTACCTATACATGGAACATG
CATGATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTGTTCGATTGTGGTGTGTGGTGTCTTGCAGCCGGTTCCTGCCGGTACGGCGCCGCGGCCGCGTCCCTCAACGGCGACCT
GCTCGCCGGGGCGGGCCCTGCCCTGTACAGACAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGACGAGGAGCTCTGCGCTACCGCC
GGCGTGAAGGTCGTCGTCACGGACCGTGCCAGCACGAAGACGAACGACACCGACCTCGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCTGGGCGGCTCACCAAGCTCGGCGCCGTCGACGTCGAATACAAGAGGTAATAACA--
--------------------------------------------------------------------------------
AACAAAAACAGCGCCGCTCGAGCATGCCTGCTGTCATGAATACATAAACGACTCCATTTGTCTCGGAGCATCGAGGTTGG
AAACAGCTAGGCTCACGATTTGTCAACGCTGCCGCGAATGTGTAGGGTGCCGTGCGAGTACTCGGGCAAGAACCTCTCGG
TGCGGGTGGAGGATCGGAGCCGCGCGCCCGGCGAGCTGGCCATCACGATCCTCTAGCAGGGCGGACAGACCGACATCGTC
CAAGTCGACGTCGCGCAGGTCTGTTCGTCGTCGAGCTGGACATCCCTGACACGCGACCACGGGCCGGCGTGGAGCACGAG
CCTGGCGCCACCGGGGCCGCTGAAGCTCAGGGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTCTCGACCGACCGGG
AGGTCCTGCCGCGCCAGTGGCGCGCTGGCGAGGTCTACGACACCGGCGTCCAGATCACCGAGATCGCCCAAGAAGACTGC
TTCCCCTGCGACACGCAGGAGTGGAAGTGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr4B_1215
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--TGATT-------------------------------------------------------------------------
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----------------------------------------------------------------------------CTGA
TTGTTCGAT-------TGTCGTGTCTTGCAGCCGGTTCCTGCGGGTACGGCGCGGCGGCCGCGTCCCTCAACGGCGACCT
GCTCGCCGGGGCGGGCCCGGCCCTGTACAGACAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGGTGCAAGGACGAGGAGCTCTGCAGCACCGCC
GGCGTGAAGGTCGTCGTCACCGACCGCGCCAGCACGAAGACGAACGACACCGACCTCGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCTGGGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAAGAACA--
--------------------------------------------------------------------------------
AATAAAAACAGCACCCGCCGAGCATTCCTGCCGTCATAAATTCATACAAGACTCCATTTGACTCGGAGCATGGAGGTTGG
AAAGAGCTAGACTCAAGA-TTGTCAACGCTGGCGCGAATGTGCAGGGTGCCGTGCGTGTACGAGGGCAAGAACCTCTCAC
TGCGGGTGGAGGAGCGGAGCCGCGCGCCCAGCGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACCGACATCGTC
GAGGTCGACGTCACGCAGGTCGGTTCGCCGTCGAGCTGGACGTCCCTGACACACGACCACGGGCCGGCGTGGAGCACGAG
GCTGGCGCCGCCGGGGCCGCTGCAGCTCAGGGCGGTGGTGACCGGCGGGTACGACGGGGCGTGGGTCTATGCCGAACATG
AAGTCCTGCCGCGCCAGTGGCACGCCGGCGAGGTCTACGACACCGGCGTCCAGATCACCGACATCGCCCAAGAAGCCTGC
TCCCCCTGCGACACGCAGGAGTGGAAGTGACGGGTGACGA-------GG----CAAGC----------------------
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>chr4D_1215
ACATACTACAAAATCCAGTGGCTTTTCTCAACGGGTAACATCGCAAGTCGGTGCGCCGCAGGATTCATGCTCCGTTGCTT
TCGGCAATGATGTTTTTTGTGCCTCTAAGACATAGCGATTTTCATTCATGGGCGCCGAGCTCCATTGGGTGGATGGGTTG
TTCGTGGCGAGATTAATTTGTTGGACGATGGACGAAACTAGTCGTTGGTCTTCCAGGATTCACTAAACGAGCTAAACACA
AAACTTAAAATGCAATACTGTAATGAGCATAAGCACACTTGAGACACGTATGAACTGAGCTGAGCACAGTAGGTGACTCG
GTGCGCCATTAAGAGCATCTACGACGTGGACACGACCGCGGGCAGCGTCAGCCGGGTCCTCAAATGTTTGCATTTGTAAC
CTTACCTTTGAAACTCATATCCATGCAAACACAAGCATACTGAGCATCACACACAAACAATGAGTAGCGCACACGACTAC
GAATTATTCTTACATAAAAATAAATAGTCCAAATATAATCAATGCATAAAATTTGTTCATAGTGCATAATTGAAACATAA
AAAGCGTAGTTAAGTGATTTCAGCATGGATCCATAAATACTCCACAAGATCATCGAGAAGTTGCATGTGCGCATGTTGAT
GTCGATGTTTTCGATGCATCTATTCTCAGCTTAAAGTTGTCATTAGCCTTCTCCACGGCACTCATTATGCGCAAGAACAA
AGCTTGCTCATCCGGAAGCGACGTCGAAAGAAACCTTCATGATATGTTGGGTCCAATGTGAAGTCGTCCGTGTACAAGTC
GTGCGTCAGCGATCCTATCACGTGGAATAACTCTCTGGCCCTTTATCGAACCCTTGAAGTTCAATACATGTTCCTCTTCC
TTCTCAATTACTCTTTTGATGCTCATTATCATCATCATTTCAGCATCTTCATTGTCCAATCCAATGATTAGATGAACTCT
TTGTATATGAATTCGCCAAGGTATGTGTTTCCATAGCCATCATCCGGCGATGAATCCATTGGTGACCTACAAATGATCAC
AAGAATAAAAAAATCTGTTCGGGTATTTCATCGAACATATAGAGGGCAAGGTGTATGTCCAGCGGAGTTGGACGTACTGG
GGTGCCATTCGATGGCCGCACGGTCAGAGGCGTTGTGAGTTGGGGTCTCCGGTGCAAGTGTTGTGGGTTAGGAACAGTGC
GGACGAGGCATGAAAGATGACAGAAACATGATAGATTGGATAAGGAGAGGGTCATTGTGGTGGACGTGTCCAGGCGTCGA
CCAGATATGAGCTTTATATGAGAGTGTCGGTCGGTCTGAACGTTGAGCCGTGTTTGTCCGGTTCGATTGGACAACGCTTT
TTTGTCCGGTCAATGACCCGTCAAGCTGCTCGTTCGTCTGAAATGAATATGAGACATCTGGTTCTAGATGCTCTAACATT
AGCCACTCATCAGTGCAACTATAACCATCTACTCCTCAGTCCTCACGGTATGATAACGATTGCCACTGGAGCTTATAGTG
TAGTGGCCAAAATGCGTGTATGTGGTGCTGGCCGGTGAAAGCCAGCCAAGATTCTCTCGGAGTGCATTGTAGTATGTCTG
TCCGCCGCCACCAACCAGGGGCGGCGCCGCCGCACCGCGTAAATTATCCATTTTTGGAAAACGGTGGCCAAAATTCAGGC
ACAGGGGTGACGCAAACGAGCAAAACGTGCACGTCCTTGAACTCCATGTAGTATGTCTCCATCCACACGCTAATCCATAA
ATGTTGGAATAGCTTGTGTAGTTGATTAGGCCTAAAATTTTAGTTGAGTGGATGCAAGCAAATCATACCATTCTGATCTT
GATCGACTCGTGTAAATTGTGCCGTTTCAGGACAGTGCAAAGATTAATTAATGCGTAATGAAAGCAACATGGCGACGCTT
AACTGAATCAAAAGTTGTGAGCAATTTTGCAGCGGCCTGATAGATTAGGTGCATGCTAAATTAAGCGCACTATACCTTGC
GTGCAGCATCAAGCGATAAATCGAATTGACCTAGTGCGATCGATCGGTGCGGTGCTAATTCTATCAATAACCCAGATGGT
CTAGCCGGCTTTCCGAGGCATTTGTTCGTGCAAACGACATGGGTATTTTTTTTTTCAGGTTTTGTTTAGAAATCTTGTGA
GTTTGGGTGGTACGGCAAAGTGACGGTGTTGTTCTAGTGTAGGAATAATATCTCCCCTCTCTTTTTCCCCGTCCCTTTGG
TGTGCTTATCCTCGACGGAGGGCATGTGGAATGTATTTTTGACGGGTAATGGGTCTTCCAAGATCCGTTTTGTTTAGGTT
TTGATGGATGCATCTGGATTCGGCCACCTTTTGTGGTCCTCAGAGTTTCTACATGCTTTTATCGGTGTTTTCTTCTCCAG
GGCGGCAGTGCTTTGCAAATCGTAGCTATCGGTGTTCGCTGGTTTGCTTCGACGACTTCCCGGCCACTGCTTCTACAAGT
TTCTGGGTTTCAAAAGGTTTACTCCGATGAGACGGAGACTCGTAGCAAAATCGAGCTATGCTCGCGGCACACCTGCCGGT
GGATACAGAAGAAAGAAGACTTCGACGCACTCAAGTATTTGAATGTAATTTTATTTTTTTGTATGGATGTGTTTGTAAGG
ACATATGATGATTAAAATATGTAGGCCTTTTCACAAAAAATAGTAGACCTTTTTTTTGAAACCAACATGTGGTTGGATGG
TTAGAGAGACGATAGTATCCCAGAATAATCTGTCGAGCTCTCTAGAAGAAAGTCAGTCAACAAGATCACCGAGGTTGTAG
TTGTAGACCCTGAGTGGTGTGCACCGTGGCAGGACGTGGTGGTGGTGTATATAAGCAGTCGTCAGGCACATGGACCACCA
CCACCACCCGCAAGAAAAGAAAAGAAACGACGATGGCCGTCTCTCGCTGCTCCATCCTTCTGCTGCCGCTCCTCTTCCTC
TCCACCCTCACGCCGCCCGCCTCCGCCTGCGACAGCTGCGTGCACCGCACCAAAGCCGCCTACTACGCGTCCTCTCTCAC
CCTCGCCGGTACAATTCATATATTACACCTGCATACACATGCTCTGTTTCTACCTATACATGGCACATGCATGGTTCTGA
TTGTTCGAT-------TGTCGTGTCTTGCAGCCGGTTCCTGCGGGTACGGCACGGCGGCCGCGTCCCTCAACGGCGACCT
GCTCGCCGGGACGGGCCCCGCCCTGTACAGACAAGGCGTCGGCTGCGGCGCGTGCTTCCAGGT-----------------
--------------------------------------------------------------------------------
----------------------------------------------GCGCTGCAAGGAAGAGGAACTCTGCACTACCGCC
GGCGTGAAGGTCGTCGTCACGGACCGCGCCAGCACGAAGACGAACGACACCGACCTCGTGCTGAGCAGCCCGGCGTTCGC
CGCCATGGCCCGCCCCGGCATGGCTGGGCGGCTCGCCAAGCTCGGCGCCGTCGACGTCGAGTACAAGAGGTAATCCAAAG
C-C----CCCTCTCTTTT--------------------------------------------------------------
-------------------------------------------------------ATTTGTCTCGGTGCATGGAGATTGG
AAAGAGCTAGACTCAAGA-TTGTCAACGCTGCCGCGAATGTGCAGGGTGCCGTGCGTGTACGAGGGCAAGAACCTCTCGG
TGCGGGTGGACGAGCGGAGCCGCGCGCCCAGCGAGCTGGCCGTCACGATCCTCTACCAGGGCGGCCAGACCGACATTGTC
GAGATCGATGTCGCACAGGTCGGCTCGTTCAA---CTGGATGTTCATGACACACGACCACGGGCCGGCGTGGAGCACGAG
CGAGGCGCCGCCGGGGCCGCTGCAGCTGAGGGCGGTGGTGACCAGCGGGTTCGACGGGGCATGGGTCTATGCCGAACATG
AAGTCCTGCCGCGCCAGTGGCACGCCGGCGAGGTCTACGACACCGGCGTCCAGATCACCGCCATCGCCCAAGAAGCCTGC
TCCCCCTGCGACACGCAGGAGTGGAAGTGACGGCTGACGA-------GG----CAAGC----------------------
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>SNPs
S-SSS-S-SS-S-SSSS-SSSSSSSSSSSS-SSS-SS-SSSSSS--SSSS---SSS-S-SSSSSS-S-SSSS-SSSSSS-
-SSSSS-SSSS-SS-SSSSSSS---SSSSSSSS-S-S--SSS--SS---S-SSS-SSSSSSSSS-SSS-SSSS--SS-SS
SSSSSSSSSSSSSS--SSSS-S--SSS--SSSSSSSS--SSSSS-S-SSSS--SSSSSS-SSSSS-S-SSSSSS--SS-S
SSS---SSSS-SS-SSS--S-SSSSSSS-SSSSSSSS-SSS-SS-S-SSS-S-SS---SS-SSSSSSSSSSS-SSS---S
SSSSS-SS-S-SSSSSS--SS-SS-SS--SSSSSSSSSS-SSSSS-SSSSSSSSSS-S-SSSSSSSSSSSS-SSSSSS--
SSSSSS--SSS-SS--SS-S-SSSSSSSS-S---S-SS-SS-SSSS-SS-SSS-SSS-SSSS--SSSSS---SSSS--SS
SSS--SSSS-SS-S-SSSSSSSS-SSS--SSSSSS-SSSSS--SSSSSSS--SS-S--SSSSS-SSS-SSSSSSSSSSSS
SSSSSSS-SSSSSS-SSSSSS-S-SSS-S--SSS-SSSSSSSSSSSSS-SS------S--------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------S-----------------S--S-------SS-----------------------------
---------SS----------------------------------S----------------------------------
-------------------------------------S----------------S-------------------------
---------------------S------------------------------------------------S---------
--------------------------------------------------------------------S-----------
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----S---------------------------------------------------------------------------
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--SS------------------SS-----------------------------S--------------------------
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-------------------------------------------------------------S------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
----------------------------------------------------S---------------------------
------S--S-------S--------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------S-----------------------------S------------S-------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-------------------------------S--------------------------------------------S---
------------------------SSS-----------------------------------S----------S------
-----------------------------------S----S--------------S------------------------
----------------------------------------S-------------------S-------------------
----------------------S---------------------S-----------------------------------
--S----------S------------------------------------------------------------------
------------------------S---------------S---------------------------------------
--------------------------------------------------------------------------------
---SS------------------------SS-----------------------------SSSS----------------
---------------------------------------------------S-------S----SSSS-S----------
S-------------------------------------------------------------------------------
-----S---------------------------------SS-S-S--------------------------S--------
-------------------------S--------------------------S----------------S----------
------S--------S-S---------------SSSSS
>forward_249
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---------------------------------------------------------------------CCACCAAGCCT
TTCCTTTGC-----------------------------------------------------------------------
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>reverse_3778
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-----------------GTTGTCAACGCATGTGCAGG-------------------------------------------
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--------------------------------------
>forward_252
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CCAAGCCT
TTCCTTTGCGTC--------------------------------------------------------------------
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>reverse_4426
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-------------------------ACTACTAGTATGTACAGTAGCAACCA-----------------------------
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--------------------------------------
